Citrus Sinensis ID: 022184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR
Secondary Structure (PSIPRED)
cccccEEEEEEEEccccEEEEEEccccEEEEccccEEEEEEEcccEEEEEEcccEEEccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEccccccccEEEEEEccccccccccEEEEEEcccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEcccccEEEEEEcccccccccccEEEEEEccccccccccccccccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEccccccccccEEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEcccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEcccccccccccEEEEEEEccccc
Coil and Loop (DISEMBL)
megggtvtcgswikrpenvnLVVLGkssrassspsvleifsfdpkttsvytsplvtyvfdesegdpmtiavnpsgddfvcsttnggcklfevyggatdinllakkmpplqdagpqkclsfsvdgsrfaaggvdghlrimhwpslriildepkahksvldmdfsldSEFLattstdgsariwktEDGVAWTFltrnsdekielcrfskdgtkpflfctvqrgdKALLAVYDISTwnkighkrllrkpasvlsISLDGKylamgskdgdicvvDVKKMEINHWSKRLHLGTSIALvefcptqr
Flexible Loop (DISEMBL)
megggtvtcgswikrpenVNLVVLGkssrassspsvleifsfdpkttsvytSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAttstdgsariwkteDGVAWTFLTRNSDEKIELCrfskdgtkpflFCTVQRGDKALLAVYDISTwnkighkrllrkpasvLSISLDGKYLAMGSKDGDICVVDVKKMEINHwskrlhlgtsialvefcptqr
Low Complexity Region (SEG)
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR
Disordered region (IsUnstruct)
******VTCGSWIKRPENVNLVVLG**********VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC****
Disordered Region (DISOPRED)
*EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ*
Disordered Region (DISEMBL)
MEGGGTVTCGSWIKRPENVNLVVLGKS********VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR
Disordered Region (DISPRO)
***GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q8GYE0	398	SEC12-like protein 1 OS=A	yes	no	0.986	0.746	0.647	1e-115
Q39221	393	SEC12-like protein 2 OS=A	no	no	0.863	0.661	0.302	1e-25
Q9WTV0	417	Prolactin regulatory elem	yes	no	0.601	0.434	0.275	1e-08
Q9WUQ2	417	Prolactin regulatory elem	yes	no	0.601	0.434	0.28	2e-08
Q9HCU5	417	Prolactin regulatory elem	yes	no	0.601	0.434	0.26	1e-07
Q5ZME8	513	WD40 repeat-containing pr	yes	no	0.548	0.321	0.247	2e-07
Q99M63	513	WD40 repeat-containing pr	no	no	0.548	0.321	0.235	5e-07
Q6NRT3	513	WD40 repeat-containing pr	N/A	no	0.548	0.321	0.235	5e-07
Q3UKJ7	513	WD40 repeat-containing pr	no	no	0.548	0.321	0.235	5e-07
Q2TAY7	513	WD40 repeat-containing pr	no	no	0.548	0.321	0.235	5e-07

>sp|Q8GYE0|PHF1_ARATH SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/301 (64%), Positives = 242/301 (80%), Gaps = 4/301 (1%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
           G V CGSWI+RP+ VN V++ K+S+    + SSP++L IFSFDP T S+ +SPL T+   
Sbjct: 11  GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLK 70

Query: 61  ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
           +S+GDP+ ++V+P GD FVCST+ GGCKLFE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct: 71  DSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGATGITILAKELLPLQNAGLQKCMAF 130

Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
           S DGS+ A GGVDG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct: 131 SFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190

Query: 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
           WK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  ++ VYDISTW K+G K
Sbjct: 191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFK 250

Query: 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300
           +L RK AS +++SLDGKY+A+G KDGD+ V +VK MEI H+SKRLHLG SIA +EFCP++
Sbjct: 251 KLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSE 310

Query: 301 R 301
           R
Sbjct: 311 R 311

Involved in Pi uptake by facilitating the trafficking of PHT1-1/PHT1;1 from the endoplasmic reticulum to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39221|STLP2_ARATH SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 128/274 (46%), Gaps = 14/274 (5%)

Query: 35  SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG 94
           +V+ I   D  T S+   PL   V       P  +AV+P     +C+  N  CKLF    
Sbjct: 75  NVILICRVDLNTNSLSEQPLGRLVVGSDL--PYRMAVHPREGGLICALPNS-CKLFHWED 131

Query: 95  GATDINLLAKK----MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150
             +  +  A +    +  L+D G Q  L+F+ +GS  AAG  DG LR+  WPS+  +L+E
Sbjct: 132 IMSREDNQAGESEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVFKWPSMNTLLNE 191

Query: 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
            +AH SV  + FS   +FL +       R+W      A   L++  DE    CRFS D  
Sbjct: 192 SQAHSSVKCLTFSESGQFLVSLGGP-VCRVWDVNASAAVASLSKEKDEMFASCRFSVDSA 250

Query: 211 KP---FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD 267
                ++    +RG   +    D   W +   K + +   S  ++S DGK LA+G+ +GD
Sbjct: 251 GNEVLYIAANTERGGSIITC--DTKLWKRKWSKPIKKNSISAFNVSADGKLLAIGTLEGD 308

Query: 268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
           + +++  +M+     K+ HLG   AL  F P  R
Sbjct: 309 VLILESTRMQTIQVVKKAHLGLVTALT-FSPDSR 341

Required for the formation or budding of transport vesicles from the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9WTV0|PREB_RAT Prolactin regulatory element-binding protein OS=Rattus norvegicus GN=Preb PE=2 SV=2

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 19/200 (9%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTS 173
           QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct: 157 QKVVCFNHDNTLLATGGSDGHVRVWKVPSLEKVL-EFKAHEGEIGDLALGPDGK-LVTVG 214

Query: 174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSKDGTKP--FLFCTVQRGDKAL 225
            D  A +W+ +  V    W      + N+  + + CRF +   +P      TVQ   K L
Sbjct: 215 WDFKASVWQKDQLVTQLQWQENGPTSSNTPYRYQACRFGQVPDQPGGLRLFTVQIPHKRL 274

Query: 226 -------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278
                  L  +D ST+  +  +    +  S L++S  G +L +G+  G + +     ++ 
Sbjct: 275 RQPPPCYLTAWDSSTFLPLQTRSCGHEVISCLTVSESGTFLGLGTVTGSVAIYIAFSLQR 334

Query: 279 NHWSKRLHLGTSIALVEFCP 298
            ++ K  H G  +  V F P
Sbjct: 335 LYYVKEAH-GIVVTDVTFLP 353

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription. Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Rattus norvegicus (taxid: 10116)

>sp|Q9WUQ2|PREB_MOUSE Prolactin regulatory element-binding protein OS=Mus musculus GN=Preb PE=1 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 19/200 (9%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTS 173
           QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct: 157 QKVVCFNHDNTLLATGGTDGHVRVWKVPSLEKVL-EFKAHEGEIGDLTLGPDGK-LVTVG 214

Query: 174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKAL 225
            D  A +W+ +  V    W      + N+  + + CRF +  D        TVQ   K L
Sbjct: 215 WDFKASVWQKDQLVTQLQWQENGPASSNTPYRYQACRFGQVPDQLGGLRLFTVQIPHKRL 274

Query: 226 -------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278
                  L  +D ST+  +  +    +  S LS+S  G +L +G+  G + +     ++ 
Sbjct: 275 RQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGLGTVTGSVAIYIAFSLQR 334

Query: 279 NHWSKRLHLGTSIALVEFCP 298
            ++ K  H G  +  V F P
Sbjct: 335 LYYVKEAH-GIVVTDVTFLP 353

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription (By similarity). Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Mus musculus (taxid: 10090)

>sp|Q9HCU5|PREB_HUMAN Prolactin regulatory element-binding protein OS=Homo sapiens GN=PREB PE=1 SV=2

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 19/200 (9%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTS 173
           QK + F+ D +  A GG DG++R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct: 157 QKVVCFNHDNTLLATGGTDGYVRVWKVPSLEKVL-EFKAHEGEIEDLALGPDGK-LVTVG 214

Query: 174 TDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKP--FLFCTVQRGDKAL 225
            D  A +W+ +  V       N      +  + + CRF +   +P      TVQ   K L
Sbjct: 215 RDLKASVWQKDQLVTQLHWQENGPTFSSTPYRYQACRFGQVPDQPAGLRLFTVQIPHKRL 274

Query: 226 -------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278
                  L  +D S +  +  K    +  S L +S  G +L +G+  G + +     ++ 
Sbjct: 275 RQPPPCYLTAWDGSNFLPLRTKSCGHEVVSCLDVSESGTFLGLGTVTGSVAIYIAFSLQC 334

Query: 279 NHWSKRLHLGTSIALVEFCP 298
            ++ +  H G  +  V F P
Sbjct: 335 LYYVREAH-GIVVTDVAFLP 353

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription (By similarity). Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Homo sapiens (taxid: 9606)

>sp|Q5ZME8|SMU1_CHICK WD40 repeat-containing protein SMU1 OS=Gallus gallus GN=SMU1 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + V +VK  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKVWNVKTTECSNTFKSL 390

Gallus gallus (taxid: 9031)

>sp|Q99M63|SMU1_RAT WD40 repeat-containing protein SMU1 OS=Rattus norvegicus GN=Smu1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + + ++K  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSL 390

Rattus norvegicus (taxid: 10116)

>sp|Q6NRT3|SMU1_XENLA WD40 repeat-containing protein SMU1 OS=Xenopus laevis GN=smu1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + + ++K  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSL 390

Xenopus laevis (taxid: 8355)

>sp|Q3UKJ7|SMU1_MOUSE WD40 repeat-containing protein SMU1 OS=Mus musculus GN=Smu1 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + + ++K  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSL 390

Mus musculus (taxid: 10090)

>sp|Q2TAY7|SMU1_HUMAN WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + + ++K  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSL 390

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
356535527	394	PREDICTED: SEC12-like protein 1-like [Gl	0.986	0.753	0.764	1e-134
356576347	394	PREDICTED: SEC12-like protein 1-like [Gl	0.986	0.753	0.754	1e-133
388521319	390	unknown [Lotus japonicus]	0.986	0.761	0.744	1e-132
224113177	385	predicted protein [Populus trichocarpa]	0.986	0.771	0.749	1e-132
225448865	391	PREDICTED: SEC12-like protein 1-like [Vi	0.986	0.759	0.745	1e-131
255584376	303	nucleotide binding protein, putative [Ri	1.0	0.993	0.734	1e-127
217073440	392	unknown [Medicago truncatula]	0.986	0.757	0.707	1e-123
449441826	393	PREDICTED: SEC12-like protein 1-like [Cu	0.986	0.755	0.686	1e-121
449522724	393	PREDICTED: LOW QUALITY PROTEIN: SEC12-li	0.986	0.755	0.680	1e-119
297819930	397	hypothetical protein ARALYDRAFT_485583 [	0.986	0.748	0.654	1e-114

>gi|356535527|ref|XP_003536296.1| PREDICTED: SEC12-like protein 1-like [Glycine max]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/297 (76%), Positives = 264/297 (88%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPEN+NLVVLG+S R SS PS+LEIFSFDPKTTS+ TSPL TYV +  EG
Sbjct: 10  GPVTCGSWIRRPENLNLVVLGRSRRGSSCPSLLEIFSFDPKTTSLSTSPLTTYVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           DP+ I V+PSGDDFVC+ +NG CKLFE+YG  T++ LLAK++ PLQ  GPQKC+SFSVDG
Sbjct: 70  DPVAITVHPSGDDFVCALSNGSCKLFELYGRETNMKLLAKELAPLQGIGPQKCISFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAGG+DGHLRIM WPS+R+ILDEP+AH SV DMDFSLDSEFLA+TSTDGSARIWKTE
Sbjct: 130 SKFAAGGMDGHLRIMEWPSMRVILDEPRAHNSVQDMDFSLDSEFLASTSTDGSARIWKTE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV    L+RNSDEKIELCRFSKDGTKPFLFC+VQ+GD ++ AVYDISTWNKIGHKRL+R
Sbjct: 190 DGVPLNTLSRNSDEKIELCRFSKDGTKPFLFCSVQKGDTSVTAVYDISTWNKIGHKRLIR 249

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
           K ASV+SIS DGKYL++GSKDGDICVV+VKKM+I H+SKRLHLGT+IA +EFCP +R
Sbjct: 250 KSASVMSISNDGKYLSLGSKDGDICVVEVKKMQIYHYSKRLHLGTNIASLEFCPGER 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576347|ref|XP_003556294.1| PREDICTED: SEC12-like protein 1-like [Glycine max]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/297 (75%), Positives = 264/297 (88%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPEN+NLVVLG+S R +S PS+LEIFSFDPKTTS+ T PL TYV +  EG
Sbjct: 10  GPVTCGSWIRRPENLNLVVLGRSRRGNSCPSLLEIFSFDPKTTSLSTCPLTTYVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           DP+ IAV+PSGDDFVC+ +NG CKLFE+YG  T++ LLAK++ PLQ  GPQKC++FSVDG
Sbjct: 70  DPVAIAVHPSGDDFVCALSNGSCKLFELYGRETNMKLLAKELAPLQGIGPQKCIAFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAGG+DGHLRIM WPS+R+ILDEP+AHKSV DMDFSLDSEFLA+TSTDGSARIWK E
Sbjct: 130 SKFAAGGLDGHLRIMEWPSMRVILDEPRAHKSVRDMDFSLDSEFLASTSTDGSARIWKIE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T L+RNSDEKIELCRFS DGTKPFLFC+VQ+GD ++ AVY+ISTWNKIGHKRL+R
Sbjct: 190 DGVPLTTLSRNSDEKIELCRFSMDGTKPFLFCSVQKGDTSVTAVYEISTWNKIGHKRLIR 249

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
           K ASV+SIS DGKYL++GSKDGDICVV+VKKM+I H+SKRLHLGT+IA +EFCP +R
Sbjct: 250 KSASVMSISHDGKYLSLGSKDGDICVVEVKKMQIYHYSKRLHLGTNIAYLEFCPGER 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521319|gb|AFK48721.1| unknown [Lotus japonicus]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/297 (74%), Positives = 262/297 (88%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPENVNL VLG+S R  S PS+L+IFSFDP TTS++TSPL T+V +  EG
Sbjct: 10  GPVTCGSWIRRPENVNLAVLGRSRRGDSCPSLLQIFSFDPNTTSLFTSPLATFVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           DP+ IAV+PSGDDF+CS +NG CKLFE+YG   ++ L+AK++ PLQ  GPQKC++FSVDG
Sbjct: 70  DPIAIAVHPSGDDFLCSLSNGSCKLFELYGHDKNMKLMAKELAPLQGIGPQKCITFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAG +DGHLRIM WPS+R+ILDEPKAHKSV DMDFSLDSEFLA+TSTDGSAR WK E
Sbjct: 130 SKFAAGALDGHLRIMEWPSMRMILDEPKAHKSVRDMDFSLDSEFLASTSTDGSARTWKIE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T L+RNSDEKIELCRFSKDGTKPFLF +VQ+GDK+  AV+D+STWNKIGHKRLLR
Sbjct: 190 DGVPLTTLSRNSDEKIELCRFSKDGTKPFLFGSVQKGDKSFTAVWDMSTWNKIGHKRLLR 249

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
           K ASV+SIS DGKYL+MGSKDGDICVV++KKM+I+H+SKRLHLGT+IA +EFCPT+R
Sbjct: 250 KSASVMSISHDGKYLSMGSKDGDICVVEIKKMQIHHYSKRLHLGTNIATLEFCPTER 306

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113177|ref|XP_002316416.1| predicted protein [Populus trichocarpa] gi|222865456|gb|EEF02587.1| predicted protein [Populus trichocarpa]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/299 (74%), Positives = 263/299 (87%), Gaps = 2/299 (0%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSS--RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES 62
           GTVTCGSWI+RPEN+NLVVLGKSS  R S+S SVLEIFSFDP+T S+  SP VTYVF+E+
Sbjct: 3   GTVTCGSWIRRPENLNLVVLGKSSKKRESASRSVLEIFSFDPQTASLSNSPQVTYVFEET 62

Query: 63  EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV 122
           EG+P+TIAV+P+GDDFVCST+ GGCKL E+ G  T++ LLAK++PPLQD GPQ C++FSV
Sbjct: 63  EGEPVTIAVHPNGDDFVCSTSKGGCKLLELSGQETNLKLLAKELPPLQDVGPQNCMAFSV 122

Query: 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182
           DGS+FA GGV+G +RI+ WPSLRIILDE KAH SV DMDFSLDSEFLA+TSTDGSARIWK
Sbjct: 123 DGSKFATGGVEGRVRILKWPSLRIILDEAKAHNSVRDMDFSLDSEFLASTSTDGSARIWK 182

Query: 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242
            EDG A   LTRNSDEKIELCRFSKDGTKPFLFC VQ+GDKA+ +VYDISTW KIG+KRL
Sbjct: 183 AEDGSAVATLTRNSDEKIELCRFSKDGTKPFLFCAVQKGDKAVTSVYDISTWKKIGYKRL 242

Query: 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
           LRKPA+++SISLDGKYLA+GSKDGD+CV +VK ME++H S+RLHLGT I  +EFCP+QR
Sbjct: 243 LRKPAAIMSISLDGKYLALGSKDGDVCVAEVKTMEVSHLSRRLHLGTCITSLEFCPSQR 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448865|ref|XP_002262948.1| PREDICTED: SEC12-like protein 1-like [Vitis vinifera]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/299 (74%), Positives = 260/299 (86%), Gaps = 2/299 (0%)

Query: 3   GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES 62
           GGG+V C +WI+RPEN+NLV++ +S R +SSP+VLEIFSFDP TTS+ +SPL TYV +E 
Sbjct: 4   GGGSVACAAWIRRPENLNLVIICRSGRRNSSPAVLEIFSFDPMTTSLSSSPLATYVLEE- 62

Query: 63  EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV 122
            GDPM +AV+PSGD+ VCSTT G CKLFE+Y    +I LLAKK+  L+  GPQKCL+FSV
Sbjct: 63  -GDPMAVAVHPSGDELVCSTTTGDCKLFELYAQEGNIKLLAKKLNALEGVGPQKCLAFSV 121

Query: 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182
           +GSRFA GGVDGHLRI+ WPS++IILDEP+AH S  DMDFSLD+EFLA+TSTDGSARIWK
Sbjct: 122 EGSRFATGGVDGHLRILEWPSMQIILDEPRAHNSFRDMDFSLDTEFLASTSTDGSARIWK 181

Query: 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242
             DGV  T LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA+ AV+DISTWNKIGHKRL
Sbjct: 182 INDGVPLTTLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAVTAVWDISTWNKIGHKRL 241

Query: 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
           L+KPASV+S+SLDGKYLA+GSKDGD+CVV+VKKMEI HWSKRLHLGT IA +EFCP +R
Sbjct: 242 LKKPASVMSMSLDGKYLALGSKDGDVCVVEVKKMEICHWSKRLHLGTCIAALEFCPRER 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584376|ref|XP_002532922.1| nucleotide binding protein, putative [Ricinus communis] gi|223527315|gb|EEF29464.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/301 (73%), Positives = 256/301 (85%)

Query: 1   MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
             G G VTCGSWI+R +NVNLVVLGKS  ++SS SVL+IFSFDP TTS+  SPL +YV +
Sbjct: 3   QRGRGIVTCGSWIRRSDNVNLVVLGKSRTSNSSSSVLDIFSFDPITTSLAPSPLASYVLE 62

Query: 61  ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
           E+EGD + IAV+PSGDDF+CSTT GGCKLFE++G  T++ LLAK++PPLQD G QKCL F
Sbjct: 63  ETEGDVVAIAVHPSGDDFICSTTKGGCKLFELHGQETNLKLLAKELPPLQDVGTQKCLVF 122

Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
           SVDGSRFA+GGVDGHLRI+ WPS RII DE +AHKS  DMD SLDS FLA+TSTDGSARI
Sbjct: 123 SVDGSRFASGGVDGHLRILEWPSQRIIADERRAHKSFRDMDISLDSAFLASTSTDGSARI 182

Query: 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
           W  EDG   T +TRNSDEKIELCRFSKDGTKPFLFC VQRGDKA  AVYDISTW KIG+K
Sbjct: 183 WNVEDGAPLTTVTRNSDEKIELCRFSKDGTKPFLFCAVQRGDKATTAVYDISTWKKIGYK 242

Query: 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300
           RLL+KPA ++S+SLDGKYLA+GSKDGDICV +VKKME++HWS+RLHLGT I  +EFCP+Q
Sbjct: 243 RLLKKPACIMSVSLDGKYLALGSKDGDICVAEVKKMEVSHWSRRLHLGTCITSLEFCPSQ 302

Query: 301 R 301
           R
Sbjct: 303 R 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073440|gb|ACJ85079.1| unknown [Medicago truncatula]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/297 (70%), Positives = 255/297 (85%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPEN+NLVVLG+S R +S P++L+IFSFDP T S+ TSPL  +V +  EG
Sbjct: 10  GPVTCGSWIRRPENLNLVVLGRSKRGNSCPALLQIFSFDPITVSLSTSPLTNFVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           D + IAV+PSGDDF+CS +NG CKLFE+YG   ++ LLAK++ PLQ    Q C++FSVDG
Sbjct: 70  DLVAIAVHPSGDDFMCSLSNGSCKLFELYGHEANMKLLAKELTPLQGICSQTCITFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAGG DGHLRIM WPS+RIILDEP+AHKSV DMDFSLDSEFLA+TSTDGSARIWK E
Sbjct: 130 SKFAAGGSDGHLRIMEWPSMRIILDEPRAHKSVRDMDFSLDSEFLASTSTDGSARIWKVE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T L+RNSDEKIELCRFSK GTKPFLF  VQ+GDK+L AV+D+S+WNKIGHKRLLR
Sbjct: 190 DGVPVTTLSRNSDEKIELCRFSKGGTKPFLFGAVQKGDKSLTAVWDMSSWNKIGHKRLLR 249

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
           K AS +++S DGKYL++ SKDGDICVV+VKKM+I+H+SKRLHLGT+IA ++FCP++R
Sbjct: 250 KSASAMAVSHDGKYLSLASKDGDICVVEVKKMQIHHYSKRLHLGTTIATLDFCPSER 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441826|ref|XP_004138683.1| PREDICTED: SEC12-like protein 1-like [Cucumis sativus]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/297 (68%), Positives = 250/297 (84%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G ++CGSWI+RPENVNL ++G+S    SSPS LEIFSFDPK TS+ +SPL  + F+E +G
Sbjct: 9   GPLSCGSWIRRPENVNLALIGRSRPPDSSPSTLEIFSFDPKVTSLSSSPLTEFAFEECDG 68

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           D +++ V+PSGD+ VCSTT GGCKLFE+ G   ++ LL K++P L+D GPQ CL+FSVDG
Sbjct: 69  DLVSVTVHPSGDEIVCSTTRGGCKLFELCGQELNVKLLIKELPSLKDVGPQSCLTFSVDG 128

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+ A GGVDGHLRI  WPSLR ILDEP A KSV DMDFSLDSEFLA+TS+DGSAR+WKT+
Sbjct: 129 SKLATGGVDGHLRIFEWPSLRPILDEPNAQKSVRDMDFSLDSEFLASTSSDGSARVWKTD 188

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T LTRN+DEKIELCRFSKDGTKPFLFCTVQ+G+KA+ AV+DIS W +IG+KRLLR
Sbjct: 189 DGVPITTLTRNTDEKIELCRFSKDGTKPFLFCTVQKGEKAVTAVWDISNWKRIGYKRLLR 248

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
           KPA ++SIS DGKYLA+GSKDGD+CV +VKKME++H SKRLHLGT I  ++FCP++R
Sbjct: 249 KPACIMSISRDGKYLALGSKDGDVCVAEVKKMEVSHMSKRLHLGTPIKTLDFCPSER 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522724|ref|XP_004168376.1| PREDICTED: LOW QUALITY PROTEIN: SEC12-like protein 1-like [Cucumis sativus]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/297 (68%), Positives = 248/297 (83%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G ++CGSWI+RPENVNL ++G+S    SSPS LEIFSFDPK TS+ +SPL  + F+E +G
Sbjct: 9   GPLSCGSWIRRPENVNLALIGRSRPPDSSPSTLEIFSFDPKVTSLSSSPLTEFAFEECDG 68

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           D +++ V+PSGD+ VCSTT GGCKLFE+ G   ++ LL K++P L+D GPQ CL+FSVDG
Sbjct: 69  DLVSVTVHPSGDEIVCSTTRGGCKLFELCGQELNVKLLIKELPSLKDVGPQSCLTFSVDG 128

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+ A GGVDGHLRI  WPSLR ILDEP A KSV DMDFSLDSEFLA+TS+DGSAR+WKT+
Sbjct: 129 SKLATGGVDGHLRIFEWPSLRPILDEPNAQKSVRDMDFSLDSEFLASTSSDGSARVWKTD 188

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T LTR+S  KIELCRFSKDGTKPFLFCTVQ+G+KA+ AV+DIS W +IG+KRLLR
Sbjct: 189 DGVPITTLTRSSGXKIELCRFSKDGTKPFLFCTVQKGEKAVTAVWDISNWKRIGYKRLLR 248

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
           KPA ++SIS DGKYLA+GSKDGD+CV +VKKME++H SKRLHLGT I  ++FCP++R
Sbjct: 249 KPACIMSISRDGKYLALGSKDGDVCVAEVKKMEVSHMSKRLHLGTPIKTLDFCPSER 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819930|ref|XP_002877848.1| hypothetical protein ARALYDRAFT_485583 [Arabidopsis lyrata subsp. lyrata] gi|297323686|gb|EFH54107.1| hypothetical protein ARALYDRAFT_485583 [Arabidopsis lyrata subsp. lyrata]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/301 (65%), Positives = 244/301 (81%), Gaps = 4/301 (1%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
           G V CGSWI+RP+ VN V++ K+S+    + SSP++L IFSFDP T S+ +SPL T+   
Sbjct: 11  GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPVTASLSSSPLATHTLK 70

Query: 61  ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
           ES+GDP+T++V+P+GD FVCST+ GGCK FE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct: 71  ESDGDPVTVSVHPAGDYFVCSTSKGGCKSFEIVGGATGITILAKELLPLQNAGLQKCMAF 130

Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
           S DGS+ AAGG+DG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct: 131 SFDGSKLAAGGLDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190

Query: 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
           WK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  L+ VYDISTW K+G K
Sbjct: 191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPLVNVYDISTWKKLGFK 250

Query: 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300
           +L RK AS +++SLDGKY+A+G KDGD+ V +VK MEI H+SKRLHLG SIA +EFCP++
Sbjct: 251 KLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSE 310

Query: 301 R 301
           R
Sbjct: 311 R 311

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2083850	398	PHF1 "AT3G52190" [Arabidopsis	0.986	0.746	0.654	9.2e-107
TAIR|locus:2159697	383	AT5G50550 "AT5G50550" [Arabido	0.897	0.704	0.321	1.8e-32
TAIR|locus:2832497	383	AT5G50650 "AT5G50650" [Arabido	0.897	0.704	0.321	1.8e-32
TAIR|locus:2049582	393	STL2P "AT2G01470" [Arabidopsis	0.887	0.679	0.318	3.1e-28
MGI|MGI:1355326	417	Preb "prolactin regulatory ele	0.601	0.434	0.28	4.1e-09
RGD|61929	417	Preb "prolactin regulatory ele	0.598	0.431	0.283	6.9e-09
UNIPROTKB|E2RBH1	418	PREB "Uncharacterized protein"	0.644	0.464	0.286	1.5e-08
UNIPROTKB|F1SED4	415	PREB "Uncharacterized protein"	0.591	0.428	0.280	1.3e-07
UNIPROTKB|E1BL12	418	PREB "Uncharacterized protein"	0.591	0.425	0.285	1.7e-07
UNIPROTKB|Q5ZME8	513	SMU1 "WD40 repeat-containing p	0.574	0.337	0.255	1.9e-07

TAIR|locus:2083850 PHF1 "AT3G52190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
 Identities = 197/301 (65%), Positives = 242/301 (80%)

Query:     5 GTVTCGSWIKRPENVNLVVLGKSS--RASS--SPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
             G V CGSWI+RP+ VN V++ K+S  R SS  SP++L IFSFDP T S+ +SPL T+   
Sbjct:    11 GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLK 70

Query:    61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
             +S+GDP+ ++V+P GD FVCST+ GGCKLFE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct:    71 DSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGATGITILAKELLPLQNAGLQKCMAF 130

Query:   121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
             S DGS+ A GGVDG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct:   131 SFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190

Query:   181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
             WK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  ++ VYDISTW K+G K
Sbjct:   191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFK 250

Query:   241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300
             +L RK AS +++SLDGKY+A+G KDGD+ V +VK MEI H+SKRLHLG SIA +EFCP++
Sbjct:   251 KLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSE 310

Query:   301 R 301
             R
Sbjct:   311 R 311

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006817 "phosphate ion transport" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA;IMP

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2159697 AT5G50550 "AT5G50550" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 91/283 (32%), Positives = 138/283 (48%)

Query:    25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
             G     S  P+V+ I   D  T S+   P+   V       P  +A++P     +C+  N
Sbjct:    56 GGGEGRSGIPNVILICRVDLHTNSLSEQPIGRRVIGTDL--PYRMAIHPRQGGLICALPN 113

Query:    85 GGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142
               C+LF+      D N     K +  L+D G Q  LSF+ DG+  A G  DG LR+  WP
Sbjct:   114 S-CRLFDWENIIEDDNEEESEKVVKELKDVGQQLSLSFNQDGTVLATGAEDGTLRVFEWP 172

Query:   143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202
             S++ +L+E K H SV  + FS   +FL +       R+W      A   L++  DE    
Sbjct:   173 SMKTLLNESKTHASVKSLTFSESGKFLVSLGAP-LCRVWDVNASAAIASLSKEKDEMFAS 231

Query:   203 CRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKY 258
             CRFS D  G++  ++    QRG   +   +D ++W +   K + R  + S  ++S DGK 
Sbjct:   232 CRFSVDNSGSEVLYVAANTQRGGSII--TWDTTSWRRRSSKLIKRNNSISAFNVSADGKL 289

Query:   259 LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
             LA+G+ +GD+ ++D  KM+ N   K+ HLG   AL  F P  R
Sbjct:   290 LAVGTLEGDVLIIDSTKMQTNQIVKKAHLGLVTALT-FSPDSR 331

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2832497 AT5G50650 "AT5G50650" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 91/283 (32%), Positives = 138/283 (48%)

Query:    25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
             G     S  P+V+ I   D  T S+   P+   V       P  +A++P     +C+  N
Sbjct:    56 GGGEGRSGIPNVILICRVDLHTNSLSEQPIGRRVIGTDL--PYRMAIHPRQGGLICALPN 113

Query:    85 GGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142
               C+LF+      D N     K +  L+D G Q  LSF+ DG+  A G  DG LR+  WP
Sbjct:   114 S-CRLFDWENIIEDDNEEESEKVVKELKDVGQQLSLSFNQDGTVLATGAEDGTLRVFEWP 172

Query:   143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202
             S++ +L+E K H SV  + FS   +FL +       R+W      A   L++  DE    
Sbjct:   173 SMKTLLNESKTHASVKSLTFSESGKFLVSLGAP-LCRVWDVNASAAIASLSKEKDEMFAS 231

Query:   203 CRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKY 258
             CRFS D  G++  ++    QRG   +   +D ++W +   K + R  + S  ++S DGK 
Sbjct:   232 CRFSVDNSGSEVLYVAANTQRGGSII--TWDTTSWRRRSSKLIKRNNSISAFNVSADGKL 289

Query:   259 LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
             LA+G+ +GD+ ++D  KM+ N   K+ HLG   AL  F P  R
Sbjct:   290 LAVGTLEGDVLIIDSTKMQTNQIVKKAHLGLVTALT-FSPDSR 331

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049582 STL2P "AT2G01470" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 91/286 (31%), Positives = 135/286 (47%)

Query:    25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
             G   R+  S +V+ I   D  T S+   PL   V       P  +AV+P     +C+  N
Sbjct:    66 GGEGRSGIS-NVILICRVDLNTNSLSEQPLGRLVVGSDL--PYRMAVHPREGGLICALPN 122

Query:    85 GGCKLF--EVYGGATDINLLAKK---MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139
               CKLF  E      D N   +    +  L+D G Q  L+F+ +GS  AAG  DG LR+ 
Sbjct:   123 S-CKLFHWEDIMSRED-NQAGESEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVF 180

Query:   140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA-RIWKTEDGVAWTFLTRNSDE 198
              WPS+  +L+E +AH SV  + FS   +FL   S  G   R+W      A   L++  DE
Sbjct:   181 KWPSMNTLLNESQAHSSVKCLTFSESGQFLV--SLGGPVCRVWDVNASAAVASLSKEKDE 238

Query:   199 KIELCRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD 255
                 CRFS D  G +  ++    +RG   +    D   W +   K + +   S  ++S D
Sbjct:   239 MFASCRFSVDSAGNEVLYIAANTERGGSIITC--DTKLWKRKWSKPIKKNSISAFNVSAD 296

Query:   256 GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
             GK LA+G+ +GD+ +++  +M+     K+ HLG   AL  F P  R
Sbjct:   297 GKLLAIGTLEGDVLILESTRMQTIQVVKKAHLGLVTALT-FSPDSR 341

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA;TAS

GO:0043090 "amino acid import" evidence=RCA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

MGI|MGI:1355326 Preb "prolactin regulatory element binding" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 56/200 (28%), Positives = 90/200 (45%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
             QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct:   157 QKVVCFNHDNTLLATGGTDGHVRVWKVPSLEKVL-EFKAHEGEIGDLTLGPDGK-LVTVG 214

Query:   174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKAL 225
              D  A +W+ +  V    W      + N+  + + CRF +  D        TVQ   K L
Sbjct:   215 WDFKASVWQKDQLVTQLQWQENGPASSNTPYRYQACRFGQVPDQLGGLRLFTVQIPHKRL 274

Query:   226 -------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278
                    L  +D ST+  +  +    +  S LS+S  G +L +G+  G + +     ++ 
Sbjct:   275 RQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGLGTVTGSVAIYIAFSLQR 334

Query:   279 NHWSKRLHLGTSIALVEFCP 298
              ++ K  H G  +  V F P
Sbjct:   335 LYYVKEAH-GIVVTDVTFLP 353

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

RGD|61929 Preb "prolactin regulatory element binding" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 6.9e-09, P = 6.9e-09
 Identities = 57/201 (28%), Positives = 93/201 (46%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
             QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct:   157 QKVVCFNHDNTLLATGGSDGHVRVWKVPSLEKVL-EFKAHEGEIGDLALGPDGK-LVTVG 214

Query:   174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSKDGTKPF---LFCTVQRGDKA 224
              D  A +W+ +  V    W      + N+  + + CRF +   +P    LF TVQ   K 
Sbjct:   215 WDFKASVWQKDQLVTQLQWQENGPTSSNTPYRYQACRFGQVPDQPGGLRLF-TVQIPHKR 273

Query:   225 L-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277
             L       L  +D ST+  +  +    +  S L++S  G +L +G+  G + +     ++
Sbjct:   274 LRQPPPCYLTAWDSSTFLPLQTRSCGHEVISCLTVSESGTFLGLGTVTGSVAIYIAFSLQ 333

Query:   278 INHWSKRLHLGTSIALVEFCP 298
               ++ K  H G  +  V F P
Sbjct:   334 RLYYVKEAH-GIVVTDVTFLP 353

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2RBH1 PREB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 64/223 (28%), Positives = 102/223 (45%)

Query:    99 INLLAKKMPPLQ-DAGP---QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154
             I L  + +  +Q D  P   QK + F+ D +  A GG DG++RI   PSL  +L E +AH
Sbjct:   138 IELSVENLKAVQTDFSPDPFQKVVCFNHDNTLLATGGTDGYVRIWKVPSLEKVL-EFRAH 196

Query:   155 KSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRF 205
             +  ++ D +L  +  L T   D  A +W+ +  V    W     TF   N+  + + CRF
Sbjct:   197 EGEIE-DLALGPDGKLVTVGWDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRF 253

Query:   206 SKDGTKPF---LFCTVQRGDKAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLD 255
                  +P    LF TVQ   K L       L  +D ST+  +  K    +  S LS+S  
Sbjct:   254 GHVPDQPTRLRLF-TVQIPHKRLRQPPPCYLTAWDGSTFLPLRTKSCGHEVISCLSVSES 312

Query:   256 GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298
             G +L +G+  G + +     ++  ++ +  H G  +  V F P
Sbjct:   313 GTFLGLGTVTGSVAIYIAFSLQCLYYVREAH-GIVVTDVAFLP 354

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1SED4 PREB "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 57/203 (28%), Positives = 93/203 (45%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
             QK + F+ D +  A GG DG++R+   P+L  +L E +AH+  + D+    D + L T  
Sbjct:   158 QKVVRFNHDATLLATGGTDGYVRVWKVPTLEKVL-EFRAHEGEIEDLAVGPDGK-LVTVG 215

Query:   174 TDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRFSKDGTKPF---LFCTVQRGD 222
              D  A +W+ +  V    W     TF   N+  + + CRF     +P    LF TVQ   
Sbjct:   216 RDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRFGPVPDQPAGLRLF-TVQIPH 272

Query:   223 KAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
             K L       L  +D ST+  +  +    +  S LS+S  G +L +G+  G + +     
Sbjct:   273 KRLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISCLSVSESGTFLGLGTVTGSVAIYIAFS 332

Query:   276 MEINHWSKRLHLGTSIALVEFCP 298
             ++  ++ K  H G  +  V F P
Sbjct:   333 LQRLYYVKEAH-GIVVTDVAFLP 354

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|E1BL12 PREB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 58/203 (28%), Positives = 94/203 (46%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-LATTS 173
             QK + F+ D +  A GG DG +R+   P+L  +L E KAH+  ++ D +L  +  L T  
Sbjct:   158 QKVVCFNHDNTLLATGGTDGCVRVWKVPTLEKVL-EFKAHEGEIE-DLALGPDGKLVTVG 215

Query:   174 TDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRFSKDGTKPF---LFCTVQRGD 222
              D  A +W+ +  V    W     TF   N+  + + CRF +   +P    LF TVQ   
Sbjct:   216 WDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRFGQVPDQPAGLRLF-TVQIPH 272

Query:   223 KAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
             K L       L  +D ST+  +  +    +  S LS+S  G +L +G+  G + +     
Sbjct:   273 KRLRQPPPCYLTAWDGSTFLPLRTRPCGHEVISCLSVSESGTFLGLGTVTGSVAIYIAFS 332

Query:   276 MEINHWSKRLHLGTSIALVEFCP 298
             ++  ++ K  H G  +  V F P
Sbjct:   333 LQRLYYVKEAH-GIVVTDVAFLP 354

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|Q5ZME8 SMU1 "WD40 repeat-containing protein SMU1" [Gallus gallus (taxid:9031)]

 Score = 147 (56.8 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 48/188 (25%), Positives = 85/188 (45%)

Query:   116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
             +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct:   218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query:   168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
              LAT + DG  ++WK + G       R   + +    FSKD ++  L  +  +     + 
Sbjct:   278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-ILSASFDQ----TIR 332

Query:   228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH- 286
             ++ + +   +   R      +  + + DG Y+   S DG + V +VK  E ++  K L  
Sbjct:   333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKVWNVKTTECSNTFKSLGS 392

Query:   287 -LGTSIAL 293
               GT I +
Sbjct:   393 TAGTDITV 400

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYE0	PHF1_ARATH	No assigned EC number	0.6478	0.9867	0.7462	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 18/170 (10%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTD 175
           C++FS DG   A G  DG +++    +  ++    K H   V D+  S D  +LA+ S+D
Sbjct: 14  CVAFSPDGKLLATGSGDGTIKVWDLETGELLR-TLKGHTGPVRDVAASADGTYLASGSSD 72

Query: 176 GSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234
            + R+W  E G    T     S   +    FS DG    L  +    DK  + V+D+ T 
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSY--VSSVAFSPDG--RILSSS--SRDKT-IKVWDVETG 125

Query: 235 NKI----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280
             +    GH        + ++ S DG ++A  S+DG I + D++  +   
Sbjct: 126 KCLTTLRGHT----DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 12/162 (7%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
            ++FS DG   ++   D  +++    + + +         V  + FS D  F+A++S DG
Sbjct: 98  SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 177 SARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235
           + ++W    G    T      +  +    FS DG K  L  +    D  +  ++D+ST  
Sbjct: 158 TIKLWDLRTGKCVATLTGHTGE--VNSVAFSPDGEK-LLSSS---SDGTIK-LWDLSTGK 210

Query: 236 KIGHKRLLRKPASVLSI--SLDGKYLAMGSKDGDICVVDVKK 275
            +    L      V S+  S DG  LA GS+DG I V D++ 
Sbjct: 211 CL--GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 62/275 (22%), Positives = 100/275 (36%), Gaps = 23/275 (8%)

Query: 32  SSPSVLEIFSFDPKTTSVY---TSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNGGC 87
              S+L   S    T  ++   T   +    +       ++A +P G      S+ +G  
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180

Query: 88  KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRI 146
           KL+++  G     L     P          L+FS DG    A    DG +R+    + ++
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVS-------SLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS 206
           +      H   +   FS D   LA+ S+DG+ R+W      +           +    FS
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293

Query: 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMG-S 263
            DG            D   + ++D+ T   +    L     P S LS S DG  L  G S
Sbjct: 294 PDGK----LLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Query: 264 KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298
            DG I + D++        K L   +++  V F P
Sbjct: 349 DDGTIRLWDLRT---GKPLKTLEGHSNVLSVSFSP 380

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
                  G+  ++A +P G+  + S+++G  KL+++  G     L   +           
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN------- 223

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
            ++FS DG   A+G  DG +R+    +   +        SV  + +S D + LA+ S DG
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Query: 177 SARIWK 182
           + RIW 
Sbjct: 284 TIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.6 bits (127), Expect = 5e-08
 Identities = 56/256 (21%), Positives = 97/256 (37%), Gaps = 22/256 (8%)

Query: 27  SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86
               +S  S   I  +D  T  +  S L          D +  + +P G      +++G 
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTL------SGHSDSVVSSFSPDGSLLASGSSDGT 264

Query: 87  CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH-WPSLR 145
            +L+++   ++ +  L+     +        ++FS DG   A+G  DG +R+        
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSV------LSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318

Query: 146 IILDEPKAHKS-VLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELC 203
           +     K H+  V  + FS D   L +  S DG+ R+W    G      T      +   
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG--KPLKTLEGHSNVLSV 376

Query: 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS 263
            FS DG                + ++D+ST + + +        + L  S DGK LA GS
Sbjct: 377 SFSPDG-----RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431

Query: 264 KDGDICVVDVKKMEIN 279
            D  I + D+K    +
Sbjct: 432 SDNTIRLWDLKTSLKS 447

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 29/215 (13%)

Query: 69  IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA 128
           +A +P G      + +G  K++++  G     L     P        + ++ S DG+  A
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV-------RDVAASADGTYLA 67

Query: 129 AGGVDGHLRIMHWP-SLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDG 186
           +G  D  +R+  W       +     H S V  + FS D   L+++S D + ++W  E G
Sbjct: 68  SGSSDKTIRL--WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125

Query: 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----GHKRL 242
              T L  ++D  +    FS DGT  F+  + Q  D  +  ++D+ T   +    GH   
Sbjct: 126 KCLTTLRGHTDW-VNSVAFSPDGT--FVASSSQ--DGTIK-LWDLRTGKCVATLTGHTG- 178

Query: 243 LRKPASVLSISL--DGKYLAMGSKDGDICVVDVKK 275
                 V S++   DG+ L   S DG I + D+  
Sbjct: 179 -----EVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 19/131 (14%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
           K H   V  + FS D + LAT S DG+ ++W  E G     L  ++   +     S DGT
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAASADGT 64

Query: 211 KPFLFCTVQRGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISL--DGKYLAMGSK 264
             +L           + ++D+ T   +    GH       + V S++   DG+ L+  S+
Sbjct: 65  --YLASG---SSDKTIRLWDLETGECVRTLTGHT------SYVSSVAFSPDGRILSSSSR 113

Query: 265 DGDICVVDVKK 275
           D  I V DV+ 
Sbjct: 114 DKTIKVWDVET 124

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 18/188 (9%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-----DEPKAHKSVLDMDFSLDSEFLAT 171
            ++FS DG    +G  DG +++    +   ++         +   +       +S  LA+
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
           +S DG+ ++W                E +    FS DG    L  +    D   + ++D+
Sbjct: 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDG-TIKLWDL 185

Query: 232 STWNKI----GHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLH 286
            T   +    GH      P S L+ S DG  L    S DG I + D+   ++   +   H
Sbjct: 186 RTGKPLSTLAGHTD----PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 287 LGTSIALV 294
             + ++  
Sbjct: 242 SDSVVSSF 249

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.0 bits (110), Expect = 6e-06
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 15/180 (8%)

Query: 30  ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNGGCK 88
           + SS   + ++  +        +          EG   +++ +P G   V   + +G  +
Sbjct: 301 SGSSDGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Query: 89  LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148
           L+++  G     L                +SFS DG   ++G  DG +R+    +  ++ 
Sbjct: 355 LWDLRTGKPLKTLEGH--------SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR 406

Query: 149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208
           +       V  +DFS D + LA+ S+D + R+W  +  +     + +             
Sbjct: 407 NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 49/215 (22%), Positives = 81/215 (37%), Gaps = 19/215 (8%)

Query: 55  VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP 114
                        ++A +P G     S+ +   K+++V  G     L             
Sbjct: 85  CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV------ 138

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRI--MHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLAT 171
              ++FS DG+  A+   DG +++  +        L     H   V  + FS D E L +
Sbjct: 139 -NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL---TGHTGEVNSVAFSPDGEKLLS 194

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
           +S+DG+ ++W    G       R  +  +    FS DG    L    + G    + V+D+
Sbjct: 195 SSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGY--LLASGSEDG---TIRVWDL 248

Query: 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG 266
            T   +          + L+ S DGK LA GS DG
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKP 212
            S+  + FS D E L + S+DG+ ++W  ++G     +    +     +L   S DG   
Sbjct: 66  DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 213 FLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGS-KDGDICV 270
            L  +        + ++D+ST  K+        +  + L+ S DGK LA GS  DG I +
Sbjct: 126 LLASS---SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Query: 271 VDVKK 275
            D++ 
Sbjct: 183 WDLRT 187

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWK 182
           K H   V  + FS D   LA+ S DG+ R+W 
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWK 182
           K H   V  + FS D ++LA+ S DG+ ++W 
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
PRK01742	429	tolB translocation protein TolB; Provisional	99.89
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.88
KOG0649	325	consensus WD40 repeat protein [General function pr	99.88
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.87
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.86
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
PRK03629	429	tolB translocation protein TolB; Provisional	99.86
KOG2139	445	consensus WD40 repeat protein [General function pr	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.84
KOG0649	325	consensus WD40 repeat protein [General function pr	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.83
PRK05137	435	tolB translocation protein TolB; Provisional	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG1188	376	consensus WD40 repeat protein [General function pr	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
PRK02889	427	tolB translocation protein TolB; Provisional	99.82
PRK04922	433	tolB translocation protein TolB; Provisional	99.82
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.81
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.8
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.8
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.8
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG2139	445	consensus WD40 repeat protein [General function pr	99.79
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.78
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.78
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.77
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.77
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
PRK00178	430	tolB translocation protein TolB; Provisional	99.76
PRK01029	428	tolB translocation protein TolB; Provisional	99.76
PRK02889	427	tolB translocation protein TolB; Provisional	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.75
PRK05137	435	tolB translocation protein TolB; Provisional	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
PRK04792	448	tolB translocation protein TolB; Provisional	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.73
PRK04922	433	tolB translocation protein TolB; Provisional	99.73
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.73
PRK03629	429	tolB translocation protein TolB; Provisional	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.72
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.72
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.72
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.7
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.7
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.69
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.69
KOG2321	703	consensus WD40 repeat protein [General function pr	99.69
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.66
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.66
PRK00178	430	tolB translocation protein TolB; Provisional	99.66
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.64
PRK04792	448	tolB translocation protein TolB; Provisional	99.62
PRK01029	428	tolB translocation protein TolB; Provisional	99.62
KOG1310	758	consensus WD40 repeat protein [General function pr	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
KOG1334	559	consensus WD40 repeat protein [General function pr	99.61
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.59
COG4946	668	Uncharacterized protein related to the periplasmic	99.58
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.56
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.55
KOG4547	541	consensus WD40 repeat-containing protein [General	99.55
PRK04043	419	tolB translocation protein TolB; Provisional	99.54
COG4946	668	Uncharacterized protein related to the periplasmic	99.54
KOG4547	541	consensus WD40 repeat-containing protein [General	99.54
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.53
KOG2315	566	consensus Predicted translation initiation factor	99.51
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.51
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.5
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.49
PRK04043	419	tolB translocation protein TolB; Provisional	99.49
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.48
KOG1334	559	consensus WD40 repeat protein [General function pr	99.48
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.47
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.44
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.43
KOG2314	698	consensus Translation initiation factor 3, subunit	99.4
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.4
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.4
KOG2315	566	consensus Predicted translation initiation factor	99.4
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.38
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.36
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.33
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.33
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.33
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.31
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.3
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.3
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.29
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.29
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.28
KOG2314	698	consensus Translation initiation factor 3, subunit	99.28
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.28
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.28
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.23
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.21
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.21
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.19
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.17
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.17
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.17
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.16
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.14
KOG2695	425	consensus WD40 repeat protein [General function pr	99.11
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.99
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.99
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.99
KOG2695	425	consensus WD40 repeat protein [General function pr	98.99
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.94
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.94
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.94
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.93
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.92
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.91
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.91
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.9
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.9
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.89
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.89
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.89
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.86
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.85
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.81
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.8
COG3391	381	Uncharacterized conserved protein [Function unknow	98.79
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.78
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.76
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.76
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.73
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.72
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.71
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.69
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.69
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.63
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.63
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.62
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.6
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.56
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.56
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.55
PRK02888	635	nitrous-oxide reductase; Validated	98.55
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.53
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	98.49
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.46
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.43
COG3391	381	Uncharacterized conserved protein [Function unknow	98.43
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.42
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.41
PRK02888	635	nitrous-oxide reductase; Validated	98.4
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.4
KOG3621	726	consensus WD40 repeat-containing protein [General	98.37
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.34
PRK13616	591	lipoprotein LpqB; Provisional	98.33
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.31
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.3
KOG3621	726	consensus WD40 repeat-containing protein [General	98.28
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.27
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.27
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.27
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.26
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.26
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.26
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.14
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.12
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.12
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.11
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.07
PRK13616	591	lipoprotein LpqB; Provisional	98.06
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.05
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.01
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.0
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.98
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.98
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.94
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.93
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.88
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.88
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.86
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.86
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.86
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.81
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.78
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.74
PHA02713	557	hypothetical protein; Provisional	97.68
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.61
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.59
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.53
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.52
KOG2395	644	consensus Protein involved in vacuole import and d	97.51
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.5
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.49
KOG2395	644	consensus Protein involved in vacuole import and d	97.48
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.44
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.42
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.42
PRK10115	686	protease 2; Provisional	97.38
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.34
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.32
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.29
KOG2444	238	consensus WD40 repeat protein [General function pr	97.28
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.27
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.23
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.22
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.21
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.19
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.18
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	97.16
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.03
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.02
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.95
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.93
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.93
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.88
PRK10115	686	protease 2; Provisional	96.87
KOG2444	238	consensus WD40 repeat protein [General function pr	96.86
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.76
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.71
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.7
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.69
PHA03098	534	kelch-like protein; Provisional	96.69
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.66
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	96.61
PHA02713	557	hypothetical protein; Provisional	96.58
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.55
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.55
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.53
PHA03098	534	kelch-like protein; Provisional	96.44
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.41
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.27
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.23
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.12
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.07
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.0
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.8
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.79
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.64
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.63
PRK13684	334	Ycf48-like protein; Provisional	95.5
COG5167	776	VID27 Protein involved in vacuole import and degra	95.35
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.32
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.25
PHA02790	480	Kelch-like protein; Provisional	95.17
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.94
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.93
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.88
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.87
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.87
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.8
PRK13684	334	Ycf48-like protein; Provisional	94.62
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.61
KOG2247	615	consensus WD40 repeat-containing protein [General	94.56
COG4590	733	ABC-type uncharacterized transport system, permeas	94.35
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.33
COG5167	776	VID27 Protein involved in vacuole import and degra	94.32
PHA02790	480	Kelch-like protein; Provisional	94.27
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	94.13
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.1
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.0
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.71
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.57
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.48
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.41
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.18
KOG2247	615	consensus WD40 repeat-containing protein [General	93.17
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.15
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.15
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.1
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.84
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.75
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.47
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.4
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.18
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	92.08
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.95
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	91.74
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.63
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.43
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.39
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.96
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	90.69
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.64
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.31
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.95
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.76
COG5276	370	Uncharacterized conserved protein [Function unknow	89.34
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	89.3
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.06
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.8
COG4590	733	ABC-type uncharacterized transport system, permeas	88.04
PRK13613	599	lipoprotein LpqB; Provisional	87.3
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	86.48
PLN02193	470	nitrile-specifier protein	86.26
PRK13615	557	lipoprotein LpqB; Provisional	85.88
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	85.66
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.43
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	85.38
KOG3616	1636	consensus Selective LIM binding factor [Transcript	85.38
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.37
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	84.82
COG1770	682	PtrB Protease II [Amino acid transport and metabol	83.96
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	83.47
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	83.41
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	82.59
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	82.48
COG3292	671	Predicted periplasmic ligand-binding sensor domain	82.2
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	81.93
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	81.57
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	81.45

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-49  Score=297.55  Aligned_cols=268  Identities=18%  Similarity=0.234  Sum_probs=233.6

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      .+++|.|++|+|+   +..+|.|++      |.++++|+.+.++.        .++.++|...|.|++|+|||+.||+|+
T Consensus       114 H~e~Vl~~~fsp~---g~~l~tGsG------D~TvR~WD~~TeTp--------~~t~KgH~~WVlcvawsPDgk~iASG~  176 (480)
T KOG0271|consen  114 HGEAVLSVQFSPT---GSRLVTGSG------DTTVRLWDLDTETP--------LFTCKGHKNWVLCVAWSPDGKKIASGS  176 (480)
T ss_pred             CCCcEEEEEecCC---CceEEecCC------CceEEeeccCCCCc--------ceeecCCccEEEEEEECCCcchhhccc
Confidence            4689999999987   788999884      55669999987663        345789999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-----CCCEEEEeecCCeEEEEeCCCcceecccccCCccE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i  157 (301)
                      .||+|++||.++++...+.+      ..|...|++++|.|     ..++|++++.||.++|||+..+.++..+.+|..+|
T Consensus       177 ~dg~I~lwdpktg~~~g~~l------~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V  250 (480)
T KOG0271|consen  177 KDGSIRLWDPKTGQQIGRAL------RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV  250 (480)
T ss_pred             cCCeEEEecCCCCCcccccc------cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence            99999999999888744332      34788999999976     56789999999999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec------------------------------------------
Q 022184          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------------------------------------------  195 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------------------------  195 (301)
                      +|+.|--+| +|++++.|++|++|+...|.+.+.+++|                                          
T Consensus       251 TCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~  329 (480)
T KOG0271|consen  251 TCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE  329 (480)
T ss_pred             EEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence            999997544 8999999999999998765433222111                                          


Q ss_pred             ------------------------------------CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184          196 ------------------------------------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (301)
Q Consensus       196 ------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  239 (301)
                                                          |..-|..+.||||+++     +++++.|..|++||.++++.+..
T Consensus       330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~-----IASaSFDkSVkLW~g~tGk~las  404 (480)
T KOG0271|consen  330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY-----IASASFDKSVKLWDGRTGKFLAS  404 (480)
T ss_pred             HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE-----EEEeecccceeeeeCCCcchhhh
Confidence                                                1234788999999998     89999999999999999999999


Q ss_pred             eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +.+|-..|+.++|+.|.++|++|+.|.++++|++++.++..-+ .+| ...|.++.|+|||+
T Consensus       405 fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL-pGh-~DEVf~vDwspDG~  464 (480)
T KOG0271|consen  405 FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL-PGH-ADEVFAVDWSPDGQ  464 (480)
T ss_pred             hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC-CCC-CceEEEEEecCCCc
Confidence            9999999999999999999999999999999999999988877 689 99999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.7e-48  Score=293.07  Aligned_cols=267  Identities=14%  Similarity=0.199  Sum_probs=241.8

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC--CCeEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~   80 (301)
                      ...||..|.|+.+   ...+|+|+      -.|.+++|....-        ....+|.+|.+.|.++.|+|.  +..+|+
T Consensus       174 d~rPis~~~fS~d---s~~laT~s------wsG~~kvW~~~~~--------~~~~~l~gH~~~v~~~~fhP~~~~~~lat  236 (459)
T KOG0272|consen  174 DTRPISGCSFSRD---SKHLATGS------WSGLVKVWSVPQC--------NLLQTLRGHTSRVGAAVFHPVDSDLNLAT  236 (459)
T ss_pred             CCCcceeeEeecC---CCeEEEee------cCCceeEeecCCc--------ceeEEEeccccceeeEEEccCCCccceee
Confidence            4689999999988   67899877      6667799987543        125679999999999999996  569999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  160 (301)
                      |+.||++++|++++....       .....|...|..++|+|+|++|++++.|.+-++||++++..+....+|..+|.++
T Consensus       237 ~s~Dgtvklw~~~~e~~l-------~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i  309 (459)
T KOG0272|consen  237 ASADGTVKLWKLSQETPL-------QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI  309 (459)
T ss_pred             eccCCceeeeccCCCcch-------hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence            999999999999876542       2233477899999999999999999999999999999999988888999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      +|+|||..+++|+.|..-+|||++++.++..+.+|.. +|..++|+|+|..     +++++.|++++|||++..+.+..+
T Consensus       310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~-----lATgs~Dnt~kVWDLR~r~~ly~i  383 (459)
T KOG0272|consen  310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYH-----LATGSSDNTCKVWDLRMRSELYTI  383 (459)
T ss_pred             EecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceE-----EeecCCCCcEEEeeecccccceec
Confidence            9999999999999999999999999999999998654 7999999999998     899999999999999999999999


Q ss_pred             eccCCCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          241 RLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       241 ~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+|.+-|+.++|+| .|.+|++++.|++++||...++.+++.+ .+| .+.|-+++.+|||+
T Consensus       384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGH-e~kV~s~Dis~d~~  443 (459)
T KOG0272|consen  384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGH-EGKVISLDISPDSQ  443 (459)
T ss_pred             ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh-cCC-ccceEEEEeccCCc
Confidence            99999999999999 6899999999999999999999999988 799 99999999999984

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.3e-44  Score=271.95  Aligned_cols=243  Identities=17%  Similarity=0.212  Sum_probs=217.4

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ....|.++.|+|.. +..-+|+++      .|+++++|.++...        ....+.+|...|..++|+|+|++|++++
T Consensus       216 H~~~v~~~~fhP~~-~~~~lat~s------~Dgtvklw~~~~e~--------~l~~l~gH~~RVs~VafHPsG~~L~Tas  280 (459)
T KOG0272|consen  216 HTSRVGAAVFHPVD-SDLNLATAS------ADGTVKLWKLSQET--------PLQDLEGHLARVSRVAFHPSGKFLGTAS  280 (459)
T ss_pred             cccceeeEEEccCC-Cccceeeec------cCCceeeeccCCCc--------chhhhhcchhhheeeeecCCCceeeecc
Confidence            45778999999773 244556644      78888999998653        2456899999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|.+-++||+.++..       .+....|...|.+++|.|||.++++|+.|..-+|||++++.++..+.+|.++|.+++|
T Consensus       281 fD~tWRlWD~~tk~E-------lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~f  353 (459)
T KOG0272|consen  281 FDSTWRLWDLETKSE-------LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAF  353 (459)
T ss_pred             cccchhhcccccchh-------hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeE
Confidence            999999999998765       2344468899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      +|+|..||||+.|++++|||++....+..+..|.. -|+.+.|+|...+ |   +++++.|+++++|..+++.++..+.+
T Consensus       354 sPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~-f---L~TasyD~t~kiWs~~~~~~~ksLaG  428 (459)
T KOG0272|consen  354 SPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGY-F---LVTASYDNTVKIWSTRTWSPLKSLAG  428 (459)
T ss_pred             CCCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCe-E---EEEcccCcceeeecCCCcccchhhcC
Confidence            99999999999999999999999999988887755 6999999995443 1   79999999999999999999999999


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      |++.|-++..++|+.++++++.|+++++|.
T Consensus       429 He~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  429 HEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999999999999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-42  Score=262.69  Aligned_cols=232  Identities=19%  Similarity=0.260  Sum_probs=199.5

Q ss_pred             ceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC
Q 022184           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (301)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (301)
                      .....+.||.++|.+++|+|+|.+|++|+.|.++++||+.+....       ..-..|..-|.|++|+|||+.||+|+.|
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-------~t~KgH~~WVlcvawsPDgk~iASG~~d  178 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-------FTCKGHKNWVLCVAWSPDGKKIASGSKD  178 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-------eeecCCccEEEEEEECCCcchhhccccC
Confidence            345678999999999999999999999999999999999887642       2333578899999999999999999999


Q ss_pred             CeEEEEeCCCccee-cccccCCccEEEEEecC-----CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEcc
Q 022184          134 GHLRIMHWPSLRII-LDEPKAHKSVLDMDFSL-----DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (301)
Q Consensus       134 g~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  207 (301)
                      |+|++||.++++.+ ..+.+|...|++++|.|     ..++||+++.||.++|||+..+.++..+.+|.. +|+|+.|--
T Consensus       179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG  257 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGG  257 (480)
T ss_pred             CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcC
Confidence            99999999988765 45678888999999976     567999999999999999999999999987754 799999987


Q ss_pred             CCCcceEEEEEEeCCcceEEEEEccCc-----------------------------------------------------
Q 022184          208 DGTKPFLFCTVQRGDKALLAVYDISTW-----------------------------------------------------  234 (301)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------------------------------------------------  234 (301)
                      +|-      +++++.|++|++|+...+                                                     
T Consensus       258 ~gl------iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~  331 (480)
T KOG0271|consen  258 EGL------IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV  331 (480)
T ss_pred             Cce------EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence            765      577888888888875421                                                     


Q ss_pred             --------------------------eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccC
Q 022184          235 --------------------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG  288 (301)
Q Consensus       235 --------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~  288 (301)
                                                +++..+.+|..-|+.+.||||++++|+++.|..|++|+.++|+.+..+ ++| -
T Consensus       332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-RGH-v  409 (480)
T KOG0271|consen  332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-RGH-V  409 (480)
T ss_pred             hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-hhc-c
Confidence                                      123344566677899999999999999999999999999999999988 789 9


Q ss_pred             ccEEEEEEccCCC
Q 022184          289 TSIALVEFCPTQR  301 (301)
Q Consensus       289 ~~v~~~~~spdg~  301 (301)
                      .+|+.++|+.|.|
T Consensus       410 ~~VYqvawsaDsR  422 (480)
T KOG0271|consen  410 AAVYQVAWSADSR  422 (480)
T ss_pred             ceeEEEEeccCcc
Confidence            9999999999975

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.8e-40  Score=240.23  Aligned_cols=272  Identities=17%  Similarity=0.175  Sum_probs=230.5

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ..++|+|+.|++|   .+.++.+.      .|+.+.||+--...+        .+.+.-....|..++|+|.|+++|+|+
T Consensus        54 H~~Ki~~~~ws~D---sr~ivSaS------qDGklIvWDs~TtnK--------~haipl~s~WVMtCA~sPSg~~VAcGG  116 (343)
T KOG0286|consen   54 HLNKIYAMDWSTD---SRRIVSAS------QDGKLIVWDSFTTNK--------VHAIPLPSSWVMTCAYSPSGNFVACGG  116 (343)
T ss_pred             cccceeeeEecCC---cCeEEeec------cCCeEEEEEcccccc--------eeEEecCceeEEEEEECCCCCeEEecC
Confidence            3578999999988   66777755      677778887543322        122333477899999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+...||++...+...... .......|.+.+.|+.|-+| ..|++++.|.+..+||+++++.+..+.+|.+.|.++++
T Consensus       117 LdN~Csiy~ls~~d~~g~~~-v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl  194 (343)
T KOG0286|consen  117 LDNKCSIYPLSTRDAEGNVR-VSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL  194 (343)
T ss_pred             cCceeEEEecccccccccce-eeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence            99999999998653322111 11234468899999999875 46899999999999999999999999999999999999


Q ss_pred             cC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       163 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      +| +++.+++|+-|+..++||+|.+.+.+.+.+|.. .|+++.|.|+|.-     ++++++|++.++||++..+.+..+.
T Consensus       195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~a-----fatGSDD~tcRlyDlRaD~~~a~ys  268 (343)
T KOG0286|consen  195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDA-----FATGSDDATCRLYDLRADQELAVYS  268 (343)
T ss_pred             CCCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEccCCCe-----eeecCCCceeEEEeecCCcEEeeec
Confidence            99 999999999999999999999999999998765 5999999999997     7999999999999999988776655


Q ss_pred             cc--CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          242 LL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       242 ~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..  ..+|++++||..|++|++|..|..+.+||.-.++....+ .+| ...|+++..+|||-
T Consensus       269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-~GH-eNRvScl~~s~DG~  328 (343)
T KOG0286|consen  269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-AGH-ENRVSCLGVSPDGM  328 (343)
T ss_pred             cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-ecc-CCeeEEEEECCCCc
Confidence            33  368999999999999999999999999999999888877 689 99999999999983

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.1e-41  Score=278.60  Aligned_cols=250  Identities=18%  Similarity=0.250  Sum_probs=221.2

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCc-------ceee----------------eCCceecccc
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-------TSVY----------------TSPLVTYVFD   60 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-------~~~~----------------~~~~~~~~~~   60 (301)
                      ...++|+.|++|   ..++|+|-      .+..+++|.+.+..       ..+.                ........+.
T Consensus       378 ~~~v~ca~fSdd---ssmlA~Gf------~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~  448 (707)
T KOG0263|consen  378 YQGVTCAEFSDD---SSMLACGF------VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY  448 (707)
T ss_pred             CCcceeEeecCC---cchhhccc------cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence            356889999988   67888877      67778999998632       0000                0112344588


Q ss_pred             ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEe
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d  140 (301)
                      ||.++|..+.|+|+.++|++++.|+++++|.+.+......       ...|..+|..+.|+|-|-++|+++.|++-++|.
T Consensus       449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~-------y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs  521 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI-------YKGHLAPVWDVQFAPRGYYFATASHDQTARLWS  521 (707)
T ss_pred             cCCCceeeeeecccccceeeccCCcceeeeecccceeEEE-------ecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence            9999999999999999999999999999999998876332       225789999999999999999999999999999


Q ss_pred             CCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      .....+.+.+.+|.+.|.|+.|+|+..++++||.|.+|++||..+|..++.+.+| ..+|.+++|||+|++     ++++
T Consensus       522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~Sp~Gr~-----LaSg  595 (707)
T KOG0263|consen  522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFSPCGRY-----LASG  595 (707)
T ss_pred             cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEcCCCce-----Eeec
Confidence            9998998889999999999999999999999999999999999999999999875 458999999999998     8999


Q ss_pred             CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      +.|+.|.+||+.+++.+..+.+|.+.|.++.||.+|..||+|+.|++|++||+..
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            9999999999999999999999999999999999999999999999999999864

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-40  Score=238.16  Aligned_cols=272  Identities=12%  Similarity=0.140  Sum_probs=218.7

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|+.++-.+.  +...+..+.      .|.++.+|.+..+...   .......+.||...|..+..+++|++.++++.
T Consensus        15 ~d~Vt~la~~~~--~~~~l~sas------rDk~ii~W~L~~dd~~---~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw   83 (315)
T KOG0279|consen   15 TDWVTALAIKIK--NSDILVSAS------RDKTIIVWKLTSDDIK---YGVPVRRLTGHSHFVSDVVLSSDGNFALSASW   83 (315)
T ss_pred             CceEEEEEeecC--CCceEEEcc------cceEEEEEEeccCccc---cCceeeeeeccceEecceEEccCCceEEeccc
Confidence            467888888755  345555544      6667789988776432   33445678999999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC-CccEEEEEe
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMDF  162 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~i~~~~~  162 (301)
                      |+++++||+.+++...+       ...|...|.+++|+||.+.|++|+.|.+|++|+............. .+-|.++.|
T Consensus        84 D~~lrlWDl~~g~~t~~-------f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrf  156 (315)
T KOG0279|consen   84 DGTLRLWDLATGESTRR-------FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRF  156 (315)
T ss_pred             cceEEEEEecCCcEEEE-------EEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEE
Confidence            99999999999865332       3357889999999999999999999999999998755443322222 568999999


Q ss_pred             cCC--CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          163 SLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       163 ~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      +|+  ..+|++++.|++|++||+++.+....+.+|.. .++.+++||||..     .++++.||.+.+||++.++.+..+
T Consensus       157 sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGsl-----casGgkdg~~~LwdL~~~k~lysl  230 (315)
T KOG0279|consen  157 SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSL-----CASGGKDGEAMLWDLNEGKNLYSL  230 (315)
T ss_pred             cCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCE-----EecCCCCceEEEEEccCCceeEec
Confidence            997  67999999999999999999998888887655 5999999999997     789999999999999999987655


Q ss_pred             eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc--c-----CccEEEEEEccCCC
Q 022184          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH--L-----GTSIALVEFCPTQR  301 (301)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~--~-----~~~v~~~~~spdg~  301 (301)
                       .+...|.+++|+|+.-+|+.+. +..|+|||+.++..+..+....  +     .-...+++|++||+
T Consensus       231 -~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~  296 (315)
T KOG0279|consen  231 -EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ  296 (315)
T ss_pred             -cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc
Confidence             4678899999999987776665 4569999999988776553211  0     22367899999985

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.4e-41  Score=258.54  Aligned_cols=266  Identities=16%  Similarity=0.195  Sum_probs=229.6

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      +.+|..+.|.|+   ++-+++|.      ..|.+.+|.-.        ....+..++.|.++|.++.|++++.++++|+.
T Consensus        96 kc~V~~v~WtPe---GRRLltgs------~SGEFtLWNg~--------~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~  158 (464)
T KOG0284|consen   96 KCPVNVVRWTPE---GRRLLTGS------QSGEFTLWNGT--------SFNFETILQAHDSPVRTMKWSHNGTWMISGDK  158 (464)
T ss_pred             ccceeeEEEcCC---CceeEeec------ccccEEEecCc--------eeeHHHHhhhhcccceeEEEccCCCEEEEcCC
Confidence            468999999977   44455555      34455787652        12235667899999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      +|.|++|+..-....       ...-.|...|++++|+|+...++++++||+|+|||....+....+.+|.-.|.+++|+
T Consensus       159 gG~iKyWqpnmnnVk-------~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH  231 (464)
T KOG0284|consen  159 GGMIKYWQPNMNNVK-------IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH  231 (464)
T ss_pred             CceEEecccchhhhH-------HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence            999999998655431       1111244889999999999999999999999999999888878888888899999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  243 (301)
                      |.-.++++++.|..|++||.+++.++.++..|. ..|..+.|+|++++     +++++.|..+++||+++.+.+..+++|
T Consensus       232 P~kgLiasgskDnlVKlWDprSg~cl~tlh~HK-ntVl~~~f~~n~N~-----Llt~skD~~~kv~DiR~mkEl~~~r~H  305 (464)
T KOG0284|consen  232 PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK-NTVLAVKFNPNGNW-----LLTGSKDQSCKVFDIRTMKELFTYRGH  305 (464)
T ss_pred             CccceeEEccCCceeEeecCCCcchhhhhhhcc-ceEEEEEEcCCCCe-----eEEccCCceEEEEehhHhHHHHHhhcc
Confidence            999999999999999999999999999998765 46999999999987     799999999999999998889999999


Q ss_pred             CCCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          244 RKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       244 ~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      +..++++.|+| ...+|.+|+.||.|..|.+...+++..+..+| ...|++++|+|=|
T Consensus       306 kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AH-d~~iwsl~~hPlG  362 (464)
T KOG0284|consen  306 KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAH-DGEIWSLAYHPLG  362 (464)
T ss_pred             hhhheeeccccccccceeeccCCCceEEEeccccccccCCCccc-ccceeeeeccccc
Confidence            99999999999 56789999999999999999888888888899 9999999999966

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.1e-40  Score=253.80  Aligned_cols=268  Identities=18%  Similarity=0.246  Sum_probs=229.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|+|++|+.+   +.++|+|.      .++.++||..+...         ..++..|.++|.++.|+..|.+|++++.
T Consensus       235 nkdVT~L~Wn~~---G~~LatG~------~~G~~riw~~~G~l---------~~tl~~HkgPI~slKWnk~G~yilS~~v  296 (524)
T KOG0273|consen  235 NKDVTSLDWNND---GTLLATGS------EDGEARIWNKDGNL---------ISTLGQHKGPIFSLKWNKKGTYILSGGV  296 (524)
T ss_pred             cCCcceEEecCC---CCeEEEee------cCcEEEEEecCchh---------hhhhhccCCceEEEEEcCCCCEEEeccC
Confidence            467999999988   78999977      66777999876543         3457889999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      |+++.+||..++.....+.       -|..+-..+.|-.+ ..+++++.|+.|+|+.+....++.++.+|+++|.++.|+
T Consensus       297 D~ttilwd~~~g~~~q~f~-------~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n  368 (524)
T KOG0273|consen  297 DGTTILWDAHTGTVKQQFE-------FHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN  368 (524)
T ss_pred             CccEEEEeccCceEEEeee-------eccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence            9999999998887633222       13444467888654 468899999999999999888999999999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc----eEEEEEEeCCcceEEEEEccCceEeee
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP----FLFCTVQRGDKALLAVYDISTWNKIGH  239 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~d~~~~~~~~~  239 (301)
                      |.+.+|++++.|++++||..........+..|.. .|..+.|+|+|...    .-..+++++.|++|++||+..+.++..
T Consensus       369 ~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~  447 (524)
T KOG0273|consen  369 PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT  447 (524)
T ss_pred             CCCceEEEecCCCeeEeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence            9999999999999999999999888888887765 59999999987421    011268889999999999999999999


Q ss_pred             eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +..|..+|.+++|+|+|+++|+|+.||.|+||+.+++++.+... +  ...|..++|+.+|.
T Consensus       448 f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-~--~~~Ifel~Wn~~G~  506 (524)
T KOG0273|consen  448 LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-G--TGGIFELCWNAAGD  506 (524)
T ss_pred             eccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-C--CCeEEEEEEcCCCC
Confidence            99999999999999999999999999999999999999998863 3  56799999998873

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-40  Score=237.49  Aligned_cols=235  Identities=17%  Similarity=0.162  Sum_probs=203.9

Q ss_pred             eccccccCCcceEEEECCC-CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           56 TYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ...+++|++.|+.++..+. .+.++++++|.++.+|++.......-...  .....|...|..+..++||++.++++.|+
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~--r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPV--RRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCcee--eeeeccceEecceEEccCCceEEeccccc
Confidence            4568999999999999986 45788999999999999987643221111  22334778899999999999999999999


Q ss_pred             eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-CCCeeEEEEccCCCcce
Q 022184          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPF  213 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~  213 (301)
                      ++++||+.+++..+.+.+|...|.+++|+||++.+++|+.|.+|++|++.... ..++.... ...|.++.|+|+...++
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcE
Confidence            99999999999999999999999999999999999999999999999986554 44444333 67899999999965433


Q ss_pred             EEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE
Q 022184          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (301)
Q Consensus       214 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~  293 (301)
                         +++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.+||++.++.++.+  .| ...|.+
T Consensus       165 ---Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--~a-~~~v~s  238 (315)
T KOG0279|consen  165 ---IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--EA-FDIVNS  238 (315)
T ss_pred             ---EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--cC-CCeEee
Confidence               789999999999999999999999999999999999999999999999999999999999998875  35 789999


Q ss_pred             EEEccC
Q 022184          294 VEFCPT  299 (301)
Q Consensus       294 ~~~spd  299 (301)
                      ++|+|+
T Consensus       239 l~fspn  244 (315)
T KOG0279|consen  239 LCFSPN  244 (315)
T ss_pred             EEecCC
Confidence            999997

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.9e-39  Score=236.13  Aligned_cols=245  Identities=19%  Similarity=0.213  Sum_probs=216.0

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..-|+.|+|+|.   ++++|+|+      .||...||.+......-  .......+.+|++.+.++.|-+| ..|++++.
T Consensus        97 s~WVMtCA~sPS---g~~VAcGG------LdN~Csiy~ls~~d~~g--~~~v~r~l~gHtgylScC~f~dD-~~ilT~SG  164 (343)
T KOG0286|consen   97 SSWVMTCAYSPS---GNFVACGG------LDNKCSIYPLSTRDAEG--NVRVSRELAGHTGYLSCCRFLDD-NHILTGSG  164 (343)
T ss_pred             ceeEEEEEECCC---CCeEEecC------cCceeEEEecccccccc--cceeeeeecCccceeEEEEEcCC-CceEecCC
Confidence            355889999988   78999988      88888999987442221  12234568999999999999875 47899999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      |.++.+||+++++....       ...|.+.|.+++++| +++.+++|+.|+..++||++.+..++.+.+|...|.++.|
T Consensus       165 D~TCalWDie~g~~~~~-------f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f  237 (343)
T KOG0286|consen  165 DMTCALWDIETGQQTQV-------FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF  237 (343)
T ss_pred             CceEEEEEcccceEEEE-------ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE
Confidence            99999999999986333       235889999999999 9999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      .|+|.-|++|++|++.++||+|..+.+..+.... ..+|++++||..|+.     ++++..|..+.+||.-.++.+..+.
T Consensus       238 fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl-----Lfagy~d~~c~vWDtlk~e~vg~L~  312 (343)
T KOG0286|consen  238 FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL-----LFAGYDDFTCNVWDTLKGERVGVLA  312 (343)
T ss_pred             ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE-----EEeeecCCceeEeeccccceEEEee
Confidence            9999999999999999999999999888886432 346999999999997     6788999999999999999999999


Q ss_pred             ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      +|++.|+++..+|||..+++|+.|..++||.
T Consensus       313 GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  313 GHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999999999999999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-37  Score=223.15  Aligned_cols=261  Identities=12%  Similarity=0.157  Sum_probs=214.7

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      .+.|..+...|+   ..++|.++       -..+++|++....      +.+...+.+|+..|+++.|..+|+.+++|+.
T Consensus        40 dsqVNrLeiTpd---k~~LAaa~-------~qhvRlyD~~S~n------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse  103 (311)
T KOG0315|consen   40 DSQVNRLEITPD---KKDLAAAG-------NQHVRLYDLNSNN------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSE  103 (311)
T ss_pred             ccceeeEEEcCC---cchhhhcc-------CCeeEEEEccCCC------CCceeEEeccCCceEEEEEeecCeEEEecCC
Confidence            356777788877   55666644       3456888887654      3345678999999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc-CCccEEEEEe
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK-AHKSVLDMDF  162 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~  162 (301)
                      ||+++|||++....        ...+.+..+|+++..+|+...|++|..+|.|++||+........+.. ....|.++..
T Consensus       104 Dgt~kIWdlR~~~~--------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v  175 (311)
T KOG0315|consen  104 DGTVKIWDLRSLSC--------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV  175 (311)
T ss_pred             CceEEEEeccCccc--------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence            99999999998554        34456779999999999999999999999999999987765444433 3358999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCc------eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-e
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGV------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-N  235 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~  235 (301)
                      .|||.+++.+...|+.++|++-...      ++..++.|. ..+..+.+||++++     +++++.|.+++||+.++. +
T Consensus       176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~-~~il~C~lSPd~k~-----lat~ssdktv~iwn~~~~~k  249 (311)
T KOG0315|consen  176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN-GHILRCLLSPDVKY-----LATCSSDKTVKIWNTDDFFK  249 (311)
T ss_pred             cCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc-ceEEEEEECCCCcE-----EEeecCCceEEEEecCCcee
Confidence            9999999999999999999987543      344455554 45899999999998     899999999999999987 5


Q ss_pred             EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEE
Q 022184          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~  296 (301)
                      ....+.+|+..+..++||.||+||++|+.|+.+++|++..++.++.. .+| -....+++.
T Consensus       250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy-~gh-~K~~vc~~l  308 (311)
T KOG0315|consen  250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY-QGH-HKAAVCVAL  308 (311)
T ss_pred             eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec-CCc-ccccEEEEe
Confidence            55677888899999999999999999999999999999999988877 566 444445544

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.1e-38  Score=245.32  Aligned_cols=274  Identities=19%  Similarity=0.231  Sum_probs=228.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccc--cc----cCCcceEEEECCCCC
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF--DE----SEGDPMTIAVNPSGD   76 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~----h~~~v~~~~~~~~~~   76 (301)
                      ...+|++++|+|-.  ..+++.|++..      +.++|.+..+......+...++.+  .+    .+..|++++|+.+|.
T Consensus       177 ~~~~V~~~~WnP~~--~~llasg~~~s------~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~  248 (524)
T KOG0273|consen  177 HESEVFICAWNPLR--DGLLASGSGDS------TARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT  248 (524)
T ss_pred             CCCceEEEecCchh--hhhhhccCCcc------ceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence            46789999999663  44777777544      348888865332222211111111  11    235799999999999


Q ss_pred             eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCcc
Q 022184           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS  156 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  156 (301)
                      .||+|+.||.+++|+......        ...-.|.++|.++.|+.+|++|++++.|+++.+||..+++..+.+.-|..+
T Consensus       249 ~LatG~~~G~~riw~~~G~l~--------~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~  320 (524)
T KOG0273|consen  249 LLATGSEDGEARIWNKDGNLI--------STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP  320 (524)
T ss_pred             eEEEeecCcEEEEEecCchhh--------hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence            999999999999999877653        233358899999999999999999999999999999999988888777777


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (301)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  236 (301)
                      -.++.|-.+ ..|++++.|+.|+++.+....++.++.+|+ +.|.++.|+|.+..     ++++++|++++||.+.....
T Consensus       321 ~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~-g~V~alk~n~tg~L-----LaS~SdD~TlkiWs~~~~~~  393 (524)
T KOG0273|consen  321 ALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHH-GEVNALKWNPTGSL-----LASCSDDGTLKIWSMGQSNS  393 (524)
T ss_pred             ccceEEecC-ceEeecCCCceEEEEEecCCCcceeeeccc-CceEEEEECCCCce-----EEEecCCCeeEeeecCCCcc
Confidence            678899754 469999999999999999999999999865 47999999999997     89999999999999998888


Q ss_pred             eeeeeccCCCcEEEEEcCCC---------CEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          237 IGHKRLLRKPASVLSISLDG---------KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ...+..|...|..+.|+|.|         ..+++++.|++|++||+..+.++..+ ..| ..+|.+++|+|+|+
T Consensus       394 ~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH-~~pVysvafS~~g~  465 (524)
T KOG0273|consen  394 VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKH-QEPVYSVAFSPNGR  465 (524)
T ss_pred             hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccC-CCceEEEEecCCCc
Confidence            88999999999999999964         37999999999999999999999987 678 99999999999986

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2e-37  Score=252.53  Aligned_cols=279  Identities=18%  Similarity=0.209  Sum_probs=229.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCC-ceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-LVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      +.+|-|+.|+|+   +.++|+|       ..+.++||.....-... ..| ....++.+|.+.|.++.|+.|.++|++++
T Consensus        96 k~~v~~i~fSPn---g~~fav~-------~gn~lqiw~~P~~~~~~-~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gs  164 (893)
T KOG0291|consen   96 KRGVGAIKFSPN---GKFFAVG-------CGNLLQIWHAPGEIKNE-FNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGS  164 (893)
T ss_pred             cCccceEEECCC---CcEEEEE-------ecceeEEEecCcchhcc-cCcceEeeeecCCccceeEEEeccCCceEEecc
Confidence            578999999988   6788874       45677999885544321 223 23456788999999999999999999988


Q ss_pred             cCCcEEEEEEcCCcc-----------------------------------------------------------------
Q 022184           83 TNGGCKLFEVYGGAT-----------------------------------------------------------------   97 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~-----------------------------------------------------------------   97 (301)
                      .|-+.++|.++..+.                                                                 
T Consensus       165 rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~  244 (893)
T KOG0291|consen  165 RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDG  244 (893)
T ss_pred             ccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccc
Confidence            888888888765443                                                                 


Q ss_pred             --------------------------------------------------------------------------------
Q 022184           98 --------------------------------------------------------------------------------   97 (301)
Q Consensus        98 --------------------------------------------------------------------------------   97 (301)
                                                                                                      
T Consensus       245 Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~  324 (893)
T KOG0291|consen  245 EEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAF  324 (893)
T ss_pred             hhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEE
Confidence                                                                                            


Q ss_pred             -----------ccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCC
Q 022184           98 -----------DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS  166 (301)
Q Consensus        98 -----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  166 (301)
                                 ..+...-.++...|...+.+++++|||+++++|++||.|+|||..++-+..++..|...|+.+.|+..+
T Consensus       325 g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g  404 (893)
T KOG0291|consen  325 GCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG  404 (893)
T ss_pred             cCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecC
Confidence                       000000012233466789999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc-ceEEEEEccCceEeeeeeccCC
Q 022184          167 EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKRLLRK  245 (301)
Q Consensus       167 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~  245 (301)
                      +.+++.+-||+|+.||+......+++..+.+....+++..|.|..     +.+++.| -.|.+|++++|+.+..+.+|++
T Consensus       405 ~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel-----V~AG~~d~F~IfvWS~qTGqllDiLsGHEg  479 (893)
T KOG0291|consen  405 NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL-----VCAGAQDSFEIFVWSVQTGQLLDILSGHEG  479 (893)
T ss_pred             CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE-----EEeeccceEEEEEEEeecCeeeehhcCCCC
Confidence            999999999999999999999999999887777889999999996     4555544 5699999999999999999999


Q ss_pred             CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee-eccccccccCccEEEEEEccCCC
Q 022184          246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       246 ~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +|.+++|+|++..|++++.|.+|++||+-.... ...+.  + ...+..++|+|||+
T Consensus       480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~--i-~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE--I-RSDVLAVSFRPDGK  533 (893)
T ss_pred             cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe--e-ccceeEEEEcCCCC
Confidence            999999999999999999999999999976532 22222  3 56899999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.4e-38  Score=260.52  Aligned_cols=235  Identities=18%  Similarity=0.261  Sum_probs=209.5

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc--------cccc----------------ccccCCCCCCCCC
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--------DINL----------------LAKKMPPLQDAGP  114 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~--------~~~~----------------~~~~~~~~~~~~~  114 (301)
                      +..-...++|..|++++..||.|-.|..|++|.+...+.        ...+                .........|.++
T Consensus       374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP  453 (707)
T KOG0263|consen  374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP  453 (707)
T ss_pred             EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence            333456699999999999999999999999999984321        0000                0011124568899


Q ss_pred             eeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee
Q 022184          115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR  194 (301)
Q Consensus       115 v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  194 (301)
                      |..+.|+|+.++|+++++|+++++|.+.+...+....+|..+|+.+.|+|.|-+|||++.|++-++|......+++.+.+
T Consensus       454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag  533 (707)
T KOG0263|consen  454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG  533 (707)
T ss_pred             eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc
Confidence            99999999999999999999999999999999888889999999999999999999999999999999999999999988


Q ss_pred             cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      |.. .+.|+.|+|+..+     +++++.|.++++||..++..++.+.+|..+|.+++|||+|++|++|+.||.|.+||+.
T Consensus       534 hls-DV~cv~FHPNs~Y-----~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  534 HLS-DVDCVSFHPNSNY-----VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             ccc-ccceEEECCcccc-----cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence            765 5999999999998     8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeccccccccCccEEEEEEccCCC
Q 022184          275 KMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       275 ~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +++++..+ .+| .+.|.++.||.||.
T Consensus       608 ~~~~v~~l-~~H-t~ti~SlsFS~dg~  632 (707)
T KOG0263|consen  608 NGSLVKQL-KGH-TGTIYSLSFSRDGN  632 (707)
T ss_pred             CCcchhhh-hcc-cCceeEEEEecCCC
Confidence            99999888 689 99999999999984

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.9e-37  Score=218.76  Aligned_cols=249  Identities=14%  Similarity=0.169  Sum_probs=209.0

Q ss_pred             CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCC
Q 022184           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      +.|.+|++|.....        ....+++...+.|+.+...|+++.||+++... |++||+.++.....     .....|
T Consensus        17 ~YDhTIRfWqa~tG--------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv-----~t~e~h   82 (311)
T KOG0315|consen   17 GYDHTIRFWQALTG--------ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPV-----ATFEGH   82 (311)
T ss_pred             cCcceeeeeehhcC--------eEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCce-----eEEecc
Confidence            38889999987532        23455666678899999999999999987655 99999998765221     222346


Q ss_pred             CCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 022184          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  191 (301)
                      ...|..+.|..+|+.+++|++||+++|||++..... +...+..+|+++..+|+...|+++..+|.|++||+....+...
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q-R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~  161 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ-RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE  161 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccc-hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence            789999999999999999999999999999986654 4456779999999999999999999999999999999888777


Q ss_pred             EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc------eEeeeeeccCCCcEEEEEcCCCCEEEEeeCC
Q 022184          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW------NKIGHKRLLRKPASVLSISLDGKYLAMGSKD  265 (301)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  265 (301)
                      +.......+.++...|||..     ++++...|..++|++-+.      +++..++.|+..+..+.+|||+++||+++.|
T Consensus       162 liPe~~~~i~sl~v~~dgsm-----l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  162 LIPEDDTSIQSLTVMPDGSM-----LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             cCCCCCcceeeEEEcCCCcE-----EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence            76666678999999999998     788889999999998653      3456788899999999999999999999999


Q ss_pred             CcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          266 GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       266 ~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+++||+.++.-.......+| ...++..+||.||+
T Consensus       237 ktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~  271 (311)
T KOG0315|consen  237 KTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGE  271 (311)
T ss_pred             ceEEEEecCCceeeEEEeecC-CceEEeeeeccCcc
Confidence            999999999883333333778 88999999999985

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.4e-37  Score=256.58  Aligned_cols=270  Identities=18%  Similarity=0.286  Sum_probs=224.6

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|+|+.|+++   ++.++.+.      .++.+++|.......      .....+.+|...|.+++|+|+++++++++.
T Consensus       159 ~~sv~~~~fs~~---g~~l~~~~------~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~  223 (456)
T KOG0266|consen  159 CPSVTCVDFSPD---GRALAAAS------SDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSD  223 (456)
T ss_pred             cCceEEEEEcCC---CCeEEEcc------CCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecC
Confidence            467899999988   56677655      667779998843331      223455899999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      |++|++||++......      .....|...|++++|+|+++++++|+.|++|++||++++++...+..|.+.|.+++|+
T Consensus       224 D~tiriwd~~~~~~~~------~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~  297 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNL------KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS  297 (456)
T ss_pred             CceEEEeeccCCCeEE------EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence            9999999994442211      1222588999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCc--eEEEEeecCCC-CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      +++.+|++++.|+.|++||+.++.  +...+..+... +++.+.|+|++.+     ++++..|+.+++||+..+..+...
T Consensus       298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-----ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-----LLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-----EEEecCCCeEEEEEccCCcceeee
Confidence            999999999999999999999999  45666655444 6899999999998     789999999999999999888888


Q ss_pred             eccCCC---cEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          241 RLLRKP---ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       241 ~~~~~~---v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      ..|...   +.+...++.++++++|+.|+.|++|++.++..+..+ .+|....+..++|+|..
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l-~~h~~~~~~~~~~~~~~  434 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL-EGHSKAAVSDLSSHPTE  434 (456)
T ss_pred             cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh-cCCCCCceeccccCCCc
Confidence            887764   334455788999999999999999999998877776 44534667778877753

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-37  Score=232.31  Aligned_cols=270  Identities=15%  Similarity=0.159  Sum_probs=230.1

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      -.+|+.+-++|+   ..+++++.      .+.++++|++....  +      +..++||++.|.+++|+..|++|++++.
T Consensus       108 r~~vt~v~~hp~---~~~v~~as------~d~tikv~D~~tg~--~------e~~LrGHt~sv~di~~~a~Gk~l~tcSs  170 (406)
T KOG0295|consen  108 RSSVTRVIFHPS---EALVVSAS------EDATIKVFDTETGE--L------ERSLRGHTDSVFDISFDASGKYLATCSS  170 (406)
T ss_pred             ccceeeeeeccC---ceEEEEec------CCceEEEEEccchh--h------hhhhhccccceeEEEEecCccEEEecCC
Confidence            356788888877   44555533      67788888875433  2      5678999999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      |-.+++||.++.....      .....|...|.++.|-|.|.+|++++.|.+|+.|++.++-++..+.+|..-|..++.+
T Consensus       171 Dl~~~LWd~~~~~~c~------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~  244 (406)
T KOG0295|consen  171 DLSAKLWDFDTFFRCI------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN  244 (406)
T ss_pred             ccchhheeHHHHHHHH------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec
Confidence            9999999998742211      2233467789999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE----------EEEEEeCCcceEEEEEccC
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL----------FCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~d~~~  233 (301)
                      .||.++++++.|.++++|-+.++++...+..| +.++.+++|.|...+.-+          -.+.+++.|++|++||+.+
T Consensus       245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t  323 (406)
T KOG0295|consen  245 QDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST  323 (406)
T ss_pred             CCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence            99999999999999999999999888877765 457999999875432110          1268889999999999999


Q ss_pred             ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      +.++.++.+|...|+.++|+|.|+||+++..|+++++||++++++.... ..| ...|++++|+.+
T Consensus       324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~-~ah-~hfvt~lDfh~~  387 (406)
T KOG0295|consen  324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL-EAH-EHFVTSLDFHKT  387 (406)
T ss_pred             CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc-CCC-cceeEEEecCCC
Confidence            9999999999999999999999999999999999999999999999888 478 889999999764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.6e-36  Score=222.60  Aligned_cols=265  Identities=16%  Similarity=0.157  Sum_probs=221.4

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      .++.|+++.|+|+   +.++|.|+      .|..|.+|....+....       ..+++|.++|..+.|.+|++.|++++
T Consensus        46 h~geI~~~~F~P~---gs~~aSgG------~Dr~I~LWnv~gdceN~-------~~lkgHsgAVM~l~~~~d~s~i~S~g  109 (338)
T KOG0265|consen   46 HKGEIYTIKFHPD---GSCFASGG------SDRAIVLWNVYGDCENF-------WVLKGHSGAVMELHGMRDGSHILSCG  109 (338)
T ss_pred             CcceEEEEEECCC---CCeEeecC------CcceEEEEeccccccce-------eeeccccceeEeeeeccCCCEEEEec
Confidence            3688999999987   78999987      66777999866555433       34679999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      .|.+++.||.++++...+.       ..|..-++.+.-+. .-.++.+++.|+++++||+++.+.++.+ ...-+++++.
T Consensus       110 tDk~v~~wD~~tG~~~rk~-------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv~  181 (338)
T KOG0265|consen  110 TDKTVRGWDAETGKRIRKH-------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAVG  181 (338)
T ss_pred             CCceEEEEecccceeeehh-------ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEEE
Confidence            9999999999999873332       23566677777444 3346788899999999999988876655 3456899999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce----Ee
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----KI  237 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~  237 (301)
                      |..++..+.+|+-|+.|++||++.+.....+.+|.+ +|+.+..+|+|.+     +.+.+.|.++++||++...    ++
T Consensus       182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~-----llsnsMd~tvrvwd~rp~~p~~R~v  255 (338)
T KOG0265|consen  182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSF-----LLSNSMDNTVRVWDVRPFAPSQRCV  255 (338)
T ss_pred             ecccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEeccCCCc-----cccccccceEEEEEecccCCCCceE
Confidence            999999999999999999999999999999988755 7999999999998     7889999999999998543    34


Q ss_pred             eeeeccC----CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          238 GHKRLLR----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       238 ~~~~~~~----~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      ..+.++.    .....++|+|+++.+.+|+.|..+++||..+...+..+ .+| .+.|..++|+|.
T Consensus       256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-pGh-~gsvn~~~Fhp~  319 (338)
T KOG0265|consen  256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-PGH-YGSVNEVDFHPT  319 (338)
T ss_pred             EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-CCc-ceeEEEeeecCC
Confidence            4454443    34567899999999999999999999999988888777 789 999999999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.1e-36  Score=225.79  Aligned_cols=269  Identities=16%  Similarity=0.164  Sum_probs=219.2

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      .+.+|++++.+|+   .+++++|+++..      ..+|+.....  +      ...+.+|++.|+++.|+.+|.+||+|+
T Consensus        63 H~~svFavsl~P~---~~l~aTGGgDD~------AflW~~~~ge--~------~~eltgHKDSVt~~~FshdgtlLATGd  125 (399)
T KOG0296|consen   63 HTDSVFAVSLHPN---NNLVATGGGDDL------AFLWDISTGE--F------AGELTGHKDSVTCCSFSHDGTLLATGD  125 (399)
T ss_pred             cCCceEEEEeCCC---CceEEecCCCce------EEEEEccCCc--c------eeEecCCCCceEEEEEccCceEEEecC
Confidence            4678999999975   789999886543      3777765433  2      456889999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .+|.|+||+..++.....+.       ..-..+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|
T Consensus       126 msG~v~v~~~stg~~~~~~~-------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f  198 (399)
T KOG0296|consen  126 MSGKVLVFKVSTGGEQWKLD-------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF  198 (399)
T ss_pred             CCccEEEEEcccCceEEEee-------cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc
Confidence            99999999999887644332       23467888999999999999999999999999987777788889899999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCC-------------------------------------------
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK-------------------------------------------  199 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-------------------------------------------  199 (301)
                      .|+|+.++++..||+|++|++.+++++..+.......                                           
T Consensus       199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l  278 (399)
T KOG0296|consen  199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL  278 (399)
T ss_pred             cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence            9999999999999999999999998887765211111                                           


Q ss_pred             -------eeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          200 -------IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       200 -------v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                             +.++.+.|....+-  ..+.++-||+|.|||+...+.. ..-.|..+|..+.|-+ ..+|++++.+|.|+.||
T Consensus       279 ~~~~e~~~esve~~~~ss~lp--L~A~G~vdG~i~iyD~a~~~~R-~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD  354 (399)
T KOG0296|consen  279 KPSQEELDESVESIPSSSKLP--LAACGSVDGTIAIYDLAASTLR-HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD  354 (399)
T ss_pred             cccchhhhhhhhhcccccccc--hhhcccccceEEEEecccchhh-eeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence                   11222222222111  1477889999999999887654 4556788899999988 78999999999999999


Q ss_pred             CCCceeeccccccccCccEEEEEEccCCC
Q 022184          273 VKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .++|++...+ .+| ...|.+++.+||.+
T Consensus       355 aRtG~l~~~y-~GH-~~~Il~f~ls~~~~  381 (399)
T KOG0296|consen  355 ARTGQLKFTY-TGH-QMGILDFALSPQKR  381 (399)
T ss_pred             ccccceEEEE-ecC-chheeEEEEcCCCc
Confidence            9999999887 799 99999999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.6e-35  Score=232.49  Aligned_cols=267  Identities=21%  Similarity=0.329  Sum_probs=225.4

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|++++|+|+   ..++++|+      .++.+.+|+++....        ...+..|...+..+.|+|+++++++++
T Consensus         8 h~~~i~~~~~~~~---~~~l~~~~------~~g~i~i~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~   70 (289)
T cd00200           8 HTGGVTCVAFSPD---GKLLATGS------GDGTIKVWDLETGEL--------LRTLKGHTGPVRDVAASADGTYLASGS   70 (289)
T ss_pred             cCCCEEEEEEcCC---CCEEEEee------cCcEEEEEEeeCCCc--------EEEEecCCcceeEEEECCCCCEEEEEc
Confidence            4689999999987   56777765      467789998875431        234567888999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .++.|++|++...+....       ...+...+.++.|+|+++++++++.++.+++||+++++....+..|...+.+++|
T Consensus        71 ~~~~i~i~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  143 (289)
T cd00200          71 SDKTIRLWDLETGECVRT-------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF  143 (289)
T ss_pred             CCCeEEEEEcCcccceEE-------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence            999999999987643221       1135568999999999888888888999999999988887777777789999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      +|++.++++++.|+.+++||+++++....+..+ ...+.++.|+|+++.     +++++.++.|.+||+++++.+..+..
T Consensus       144 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-----l~~~~~~~~i~i~d~~~~~~~~~~~~  217 (289)
T cd00200         144 SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEK-----LLSSSSDGTIKLWDLSTGKCLGTLRG  217 (289)
T ss_pred             cCcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCcCE-----EEEecCCCcEEEEECCCCceecchhh
Confidence            999989998888999999999988888877754 446999999999976     56677799999999999888877778


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +...+.+++|+|++.++++++.|+.|++|++.+++....+ ..| ...|.+++|+|+|+
T Consensus       218 ~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~-~~~i~~~~~~~~~~  274 (289)
T cd00200         218 HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGH-TNSVTSLAWSPDGK  274 (289)
T ss_pred             cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc-ccc-CCcEEEEEECCCCC
Confidence            8889999999999989998888999999999988887776 467 78999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.9e-35  Score=237.48  Aligned_cols=267  Identities=15%  Similarity=0.235  Sum_probs=221.6

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      .+|..++|+..   +..+|+|.+     .-+.+.+|+|..+.-.        ...++|...+++++++|||+++|+|+.|
T Consensus       308 ~~I~t~~~N~t---GDWiA~g~~-----klgQLlVweWqsEsYV--------lKQQgH~~~i~~l~YSpDgq~iaTG~eD  371 (893)
T KOG0291|consen  308 QKILTVSFNST---GDWIAFGCS-----KLGQLLVWEWQSESYV--------LKQQGHSDRITSLAYSPDGQLIATGAED  371 (893)
T ss_pred             ceeeEEEeccc---CCEEEEcCC-----ccceEEEEEeecccee--------eeccccccceeeEEECCCCcEEEeccCC
Confidence            67888899876   678999774     3467889999876643        3457999999999999999999999999


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC-ccEEEEEec
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFS  163 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~  163 (301)
                      |.|+|||...+-+...+       ..|...|+.+.|+..++.+++.+-||+|+.||+......+++.... -...+++..
T Consensus       372 gKVKvWn~~SgfC~vTF-------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD  444 (893)
T KOG0291|consen  372 GKVKVWNTQSGFCFVTF-------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD  444 (893)
T ss_pred             CcEEEEeccCceEEEEe-------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence            99999999988774333       3588999999999999999999999999999999888777665443 357789999


Q ss_pred             CCCcEEEEEeCCC-cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          164 LDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       164 ~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      |.|..+..|+.|. .|.+|++++|+.+..+.+| ++||.+++|+|++..     +++++.|.+|++||+-......+...
T Consensus       445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH-EgPVs~l~f~~~~~~-----LaS~SWDkTVRiW~if~s~~~vEtl~  518 (893)
T KOG0291|consen  445 PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH-EGPVSGLSFSPDGSL-----LASGSWDKTVRIWDIFSSSGTVETLE  518 (893)
T ss_pred             CCCCEEEeeccceEEEEEEEeecCeeeehhcCC-CCcceeeEEccccCe-----EEeccccceEEEEEeeccCceeeeEe
Confidence            9999999999887 5999999999999999876 568999999999997     89999999999999865533323334


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc-------------------ccccCccEEEEEEccCCC
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-------------------RLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~spdg~  301 (301)
                      ....+..++|+|+|+.|++++-||.|.+||.+.+.....+.                   ... ..+.+.+++|+||+
T Consensus       519 i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~-~K~Ftti~ySaDG~  595 (893)
T KOG0291|consen  519 IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK-GKTFTTICYSADGK  595 (893)
T ss_pred             eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc-CCceEEEEEcCCCC
Confidence            56778999999999999999999999999998765543221                   111 35799999999985

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.1e-36  Score=231.86  Aligned_cols=242  Identities=12%  Similarity=0.155  Sum_probs=208.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccccc-CCcceEEEECCCCCeEEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~   81 (301)
                      ...+|.++.|+++   +..++.|.      .++.|++|..+.+..         ..+.+| ...|++++|+|+...++++
T Consensus       137 HDs~Vr~m~ws~~---g~wmiSgD------~gG~iKyWqpnmnnV---------k~~~ahh~eaIRdlafSpnDskF~t~  198 (464)
T KOG0284|consen  137 HDSPVRTMKWSHN---GTWMISGD------KGGMIKYWQPNMNNV---------KIIQAHHAEAIRDLAFSPNDSKFLTC  198 (464)
T ss_pred             hcccceeEEEccC---CCEEEEcC------CCceEEecccchhhh---------HHhhHhhhhhhheeccCCCCceeEEe
Confidence            4679999999988   67888877      455678887765542         234444 5899999999999999999


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      +.||+|+|||.........       ...|.-.|.+++|+|...+|++++.|..|++||.++++++.++..|...|..+.
T Consensus       199 SdDg~ikiWdf~~~kee~v-------L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~  271 (464)
T KOG0284|consen  199 SDDGTIKIWDFRMPKEERV-------LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK  271 (464)
T ss_pred             cCCCeEEEEeccCCchhhe-------eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence            9999999999976654222       234777899999999999999999999999999999999999999999999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee-e
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-K  240 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~  240 (301)
                      |+|++++|++++.|..++++|+++.+.+..+..|.. .++++.|+|-...+    +.+++.||.|..|.+...+++.. -
T Consensus       272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~WhP~~~~l----ftsgg~Dgsvvh~~v~~~~p~~~i~  346 (464)
T KOG0284|consen  272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTSLTWHPLNESL----FTSGGSDGSVVHWVVGLEEPLGEIP  346 (464)
T ss_pred             EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-hheeeccccccccc----eeeccCCCceEEEeccccccccCCC
Confidence            999999999999999999999999888888887765 59999999988764    58899999999999985555443 3


Q ss_pred             eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      .+|...|++++|+|=|..|++|+.|.++++|.-.
T Consensus       347 ~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  347 PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            5688999999999999999999999999999754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.9e-36  Score=234.17  Aligned_cols=266  Identities=17%  Similarity=0.248  Sum_probs=223.0

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      .-.|.++.|.|.  ..-+++.++      .|+.+.||++-....       ...++.+|..+|.+++|+++|..+++++.
T Consensus       214 ~kgvsai~~fp~--~~hLlLS~g------mD~~vklW~vy~~~~-------~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf  278 (503)
T KOG0282|consen  214 TKGVSAIQWFPK--KGHLLLSGG------MDGLVKLWNVYDDRR-------CLRTFKGHRKPVRDASFNNCGTSFLSASF  278 (503)
T ss_pred             ccccchhhhccc--eeeEEEecC------CCceEEEEEEecCcc-------eehhhhcchhhhhhhhccccCCeeeeeec
Confidence            456889999964  255565544      788899999865432       24678999999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC-CEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      |+.|++||+++++...++        .....+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|
T Consensus       279 D~~lKlwDtETG~~~~~f--------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F  350 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLSRF--------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF  350 (503)
T ss_pred             ceeeeeeccccceEEEEE--------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence            999999999999874433        344677999999987 88999999999999999999998888888899999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE---eee
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGH  239 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~  239 (301)
                      -++|+++++.++|++++||+.+.+..+............++..+|++++     ++.-+.|+.|.+|.+...-.   ...
T Consensus       351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~-----~~aQs~dN~i~ifs~~~~~r~nkkK~  425 (503)
T KOG0282|consen  351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW-----FAAQSMDNYIAIFSTVPPFRLNKKKR  425 (503)
T ss_pred             ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe-----ehhhccCceEEEEecccccccCHhhh
Confidence            9999999999999999999999887776665544445789999999997     68888999999998654322   234


Q ss_pred             eeccC--CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          240 KRLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       240 ~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      +.+|.  +.-..+.|||||++|++|+.||.+.+||.++-+++..+ ..| ..++..+.|+|.
T Consensus       426 feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l-kah-~~~ci~v~wHP~  485 (503)
T KOG0282|consen  426 FEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL-KAH-DQPCIGVDWHPV  485 (503)
T ss_pred             hcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc-ccC-CcceEEEEecCC
Confidence            45554  34567899999999999999999999999999988887 678 899999999995

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.6e-34  Score=239.88  Aligned_cols=240  Identities=15%  Similarity=0.183  Sum_probs=187.6

Q ss_pred             cccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC-CEEEEeecCCe
Q 022184           58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGH  135 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~  135 (301)
                      .+.+|.+.|.+++|+| ++++|++++.|++|++||+..................|...|.+++|+|++ ++|++++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4789999999999999 888999999999999999976532111111111223477899999999975 68999999999


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      |++||+++++....+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+..|.......+.|.+++..+ +.
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i-vt  228 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI-IT  228 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE-EE
Confidence            99999999988888888888999999999999999999999999999999998888877665556678899987752 11


Q ss_pred             EEEEeCCcceEEEEEccCceE-eeeeecc-CCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCceeeccccccccCccEE
Q 022184          216 CTVQRGDKALLAVYDISTWNK-IGHKRLL-RKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~-~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~v~  292 (301)
                      +..+.+.|+.|++||+++... +.....+ ...+....|++++++|++++ .|+.|++||+.+++........+ ..++.
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~  307 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHK  307 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCc
Confidence            112235689999999987543 3222222 23455667899999999887 59999999999988776553334 56788


Q ss_pred             EEEEccC
Q 022184          293 LVEFCPT  299 (301)
Q Consensus       293 ~~~~spd  299 (301)
                      .++|.|.
T Consensus       308 g~~~~pk  314 (493)
T PTZ00421        308 GLCMMPK  314 (493)
T ss_pred             ceEeccc
Confidence            8888874

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.3e-34  Score=224.44  Aligned_cols=275  Identities=16%  Similarity=0.146  Sum_probs=211.0

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      .=|.|+.|+||   +..+|..+      .|+  +++.||..+.......   ..-.+|.+.|.+++|+||++.+++++.|
T Consensus       191 kFV~~VRysPD---G~~Fat~g------sDg--ki~iyDGktge~vg~l---~~~~aHkGsIfalsWsPDs~~~~T~SaD  256 (603)
T KOG0318|consen  191 KFVNCVRYSPD---GSRFATAG------SDG--KIYIYDGKTGEKVGEL---EDSDAHKGSIFALSWSPDSTQFLTVSAD  256 (603)
T ss_pred             cceeeEEECCC---CCeEEEec------CCc--cEEEEcCCCccEEEEe---cCCCCccccEEEEEECCCCceEEEecCC
Confidence            34899999998   67888766      444  4555666554442210   0134899999999999999999999999


Q ss_pred             CcEEEEEEcCCccccccc------------------------------------cccCCCCCCCCCeeEEEEeeCCCEEE
Q 022184           85 GGCKLFEVYGGATDINLL------------------------------------AKKMPPLQDAGPQKCLSFSVDGSRFA  128 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~  128 (301)
                      .+++|||+.+.+....+.                                    ........|...|+++..+|++++|+
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~  336 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY  336 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence            999999998776511110                                    01122335778999999999999999


Q ss_pred             EeecCCeEEEEeCCCcceec------------------------------------------------------------
Q 022184          129 AGGVDGHLRIMHWPSLRIIL------------------------------------------------------------  148 (301)
Q Consensus       129 ~~~~dg~i~v~d~~~~~~~~------------------------------------------------------------  148 (301)
                      +|+.||.|.-|+..++..-+                                                            
T Consensus       337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence            99999999999985442210                                                            


Q ss_pred             -------------ccccCC--------ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE-EeecCCCCeeEEEEc
Q 022184          149 -------------DEPKAH--------KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF-LTRNSDEKIELCRFS  206 (301)
Q Consensus       149 -------------~~~~~~--------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~  206 (301)
                                   .+..+.        -...+++++|++..++.|+.|+.|++|.+........ ....+.+++++++||
T Consensus       417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS  496 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS  496 (603)
T ss_pred             CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence                         000000        1235788999999999999999999999987664333 334566789999999


Q ss_pred             cCCCcceEEEEEEeCCcceEEEEEccCceEeee-eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccc
Q 022184          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (301)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~  285 (301)
                      ||+.+     ++++...+.+.+||..+.+.... ..-|...|.+++|+|+.+++|+|+.|..|.||+++.....-.++.+
T Consensus       497 pd~~y-----la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknA  571 (603)
T KOG0318|consen  497 PDGAY-----LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNA  571 (603)
T ss_pred             CCCcE-----EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccc
Confidence            99998     78999999999999998776433 3448899999999999999999999999999999987655666688


Q ss_pred             ccCccEEEEEEccC
Q 022184          286 HLGTSIALVEFCPT  299 (301)
Q Consensus       286 ~~~~~v~~~~~spd  299 (301)
                      | ...|+.+.|-.+
T Consensus       572 H-~~gVn~v~wlde  584 (603)
T KOG0318|consen  572 H-LGGVNSVAWLDE  584 (603)
T ss_pred             c-ccCceeEEEecC
Confidence            9 666999999754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.2e-34  Score=212.80  Aligned_cols=232  Identities=19%  Similarity=0.246  Sum_probs=196.4

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      ...+.+|++.|+.+.|+|+|..||+++.|..|.+|++.......      .....|.+.|..+.|.+|++.|++++.|.+
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~------~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF------WVLKGHSGAVMELHGMRDGSHILSCGTDKT  113 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce------eeeccccceeEeeeeccCCCEEEEecCCce
Confidence            45688999999999999999999999999999999986554311      112258899999999999999999999999


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      ++.||.++|+.++++..|.+-+..+.-+.-|. ++.+++.|+++++||+|+.+.+..+..  ...++++.|..++..   
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~--kyqltAv~f~d~s~q---  188 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN--KYQLTAVGFKDTSDQ---  188 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc--ceeEEEEEecccccc---
Confidence            99999999999999999988888888554444 677888999999999999988888753  345999999999988   


Q ss_pred             EEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee----ecccccccc---
Q 022184          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI----NHWSKRLHL---  287 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~----~~~~~~~~~---  287 (301)
                        +.+++-|+.|++||++.......+.+|..+|+.+..+|+|.++.+-+.|.++++||++....    +..+ .+|.   
T Consensus       189 --v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if-~g~~hnf  265 (338)
T KOG0265|consen  189 --VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF-QGHIHNF  265 (338)
T ss_pred             --eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe-ecchhhh
Confidence              78999999999999999999999999999999999999999999999999999999985432    3333 2220   


Q ss_pred             CccEEEEEEccCCC
Q 022184          288 GTSIALVEFCPTQR  301 (301)
Q Consensus       288 ~~~v~~~~~spdg~  301 (301)
                      .......+|+|+++
T Consensus       266 eknlL~cswsp~~~  279 (338)
T KOG0265|consen  266 EKNLLKCSWSPNGT  279 (338)
T ss_pred             hhhcceeeccCCCC
Confidence            22355678999874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.2e-35  Score=219.23  Aligned_cols=231  Identities=13%  Similarity=0.179  Sum_probs=210.6

Q ss_pred             ceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC
Q 022184           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (301)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (301)
                      ....++.+|.+.|.|+++.|.+++|++++.|++|+|||+.+++....+       ..|...|..+++|+-..+++++++|
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-------tGhi~~vr~vavS~rHpYlFs~ged  214 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-------TGHIETVRGVAVSKRHPYLFSAGED  214 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-------cchhheeeeeeecccCceEEEecCC
Confidence            355678999999999999999999999999999999999999873332       2467889999999999999999999


Q ss_pred             CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcce
Q 022184          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (301)
                      +.|+.||++..+.++.+.+|-+.|.+++.+|.-..|++++.|.++++||+++...+..+.+|. .+|..+.+.|....  
T Consensus       215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~-~~V~~V~~~~~dpq--  291 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT-NPVASVMCQPTDPQ--  291 (460)
T ss_pred             CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC-CcceeEEeecCCCc--
Confidence            999999999999999999999999999999999999999999999999999999999998765 47999999887666  


Q ss_pred             EEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE
Q 022184          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (301)
Q Consensus       214 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~  293 (301)
                         +++++.|++|++||++.++....+..|+..+.+++.+|....+|+++.| .|+-|++..++.++.+ .+| ..-|++
T Consensus       292 ---vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl-sgh-~~iint  365 (460)
T KOG0285|consen  292 ---VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL-SGH-NAIINT  365 (460)
T ss_pred             ---eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc-ccc-cceeee
Confidence               7999999999999999999999999999999999999999999999987 5999999999988875 688 888999


Q ss_pred             EEEccCC
Q 022184          294 VEFCPTQ  300 (301)
Q Consensus       294 ~~~spdg  300 (301)
                      ++-+.||
T Consensus       366 l~~nsD~  372 (460)
T KOG0285|consen  366 LSVNSDG  372 (460)
T ss_pred             eeeccCc
Confidence            9988876

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.6e-33  Score=250.85  Aligned_cols=273  Identities=13%  Similarity=0.101  Sum_probs=209.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~   81 (301)
                      ..+.|++++|+++   +.++|+|+      .++.++||+.................+. +...+.+++|+| ++.+|+++
T Consensus       482 ~~~~V~~i~fs~d---g~~latgg------~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~  551 (793)
T PLN00181        482 SSNLVCAIGFDRD---GEFFATAG------VNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASS  551 (793)
T ss_pred             CCCcEEEEEECCC---CCEEEEEe------CCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEE
Confidence            4678999999987   67888866      6778899987542110000001111222 346799999987 47899999


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  160 (301)
                      +.|++|++||+.+++...       ....|...|.+++|+| ++.+|++|+.|+.|++||++++..+..+. ++..+.++
T Consensus       552 ~~Dg~v~lWd~~~~~~~~-------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~~~v~~v  623 (793)
T PLN00181        552 NFEGVVQVWDVARSQLVT-------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TKANICCV  623 (793)
T ss_pred             eCCCeEEEEECCCCeEEE-------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cCCCeEEE
Confidence            999999999998765422       1224778999999997 78999999999999999999888776664 34689999


Q ss_pred             Eec-CCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc----
Q 022184          161 DFS-LDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----  234 (301)
Q Consensus       161 ~~~-~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----  234 (301)
                      .|+ +++.+|++|+.|+.|++||+++.+ .+..+.. +...|.++.|. ++..     +++++.|+.|++||++..    
T Consensus       624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-h~~~V~~v~f~-~~~~-----lvs~s~D~~ikiWd~~~~~~~~  696 (793)
T PLN00181        624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-HSKTVSYVRFV-DSST-----LVSSSTDNTLKLWDLSMSISGI  696 (793)
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC-CCCCEEEEEEe-CCCE-----EEEEECCCEEEEEeCCCCcccc
Confidence            995 478999999999999999998765 3455554 44579999997 5555     688899999999999743    


Q ss_pred             --eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc------------cccccCccEEEEEEccCC
Q 022184          235 --NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS------------KRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       235 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~------------~~~~~~~~v~~~~~spdg  300 (301)
                        .++..+.+|...+..++|+|++++|++|+.|+.|++|+......+...            ...+ ...|.+++|+|+|
T Consensus       697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~V~~v~ws~~~  775 (793)
T PLN00181        697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA-SQFISSVCWRGQS  775 (793)
T ss_pred             CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC-CcEEEEEEEcCCC
Confidence              456778888889999999999999999999999999998755332111            0223 5679999999987


Q ss_pred             C
Q 022184          301 R  301 (301)
Q Consensus       301 ~  301 (301)
                      +
T Consensus       776 ~  776 (793)
T PLN00181        776 S  776 (793)
T ss_pred             C
Confidence            4

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-33  Score=203.22  Aligned_cols=227  Identities=15%  Similarity=0.199  Sum_probs=189.2

Q ss_pred             eccccccCCcceEEEECCC-CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           56 TYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ...+++|.+++..++|+|- |..||+++.|+.|++|+...+.. .  ..+......|...|+.++|+|.|++|++++.|.
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~--~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-W--TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-E--EEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            4568899999999999997 88999999999999999985322 1  111122235889999999999999999999999


Q ss_pred             eEEEEeCCC--cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC---ceEEEEeecCCCCeeEEEEccCC
Q 022184          135 HLRIMHWPS--LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKDG  209 (301)
Q Consensus       135 ~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~  209 (301)
                      ++.||.-..  .+++..+++|..+|.+++|+++|++||++++|..|.||.+..+   ++...++.|.. .|..+.|+|..
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~  162 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTE  162 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCc
Confidence            999997543  4677888999999999999999999999999999999998754   44556665544 59999999998


Q ss_pred             CcceEEEEEEeCCcceEEEEEcc---CceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184          210 TKPFLFCTVQRGDKALLAVYDIS---TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (301)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~  286 (301)
                      ..     +++++.|.+|++|+-.   .+++...+.+|...|.+++|++.|..|++++.|++++||...+     .+...|
T Consensus       163 dl-----L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~  232 (312)
T KOG0645|consen  163 DL-----LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMH  232 (312)
T ss_pred             ce-----eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccchhc
Confidence            86     7999999999999876   4567888999999999999999999999999999999999652     222345


Q ss_pred             cCccEEEEEEc
Q 022184          287 LGTSIALVEFC  297 (301)
Q Consensus       287 ~~~~v~~~~~s  297 (301)
                       +.+++.++|.
T Consensus       233 -sr~~Y~v~W~  242 (312)
T KOG0645|consen  233 -SRALYDVPWD  242 (312)
T ss_pred             -ccceEeeeec
Confidence             6677777776

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2.5e-34  Score=243.20  Aligned_cols=289  Identities=15%  Similarity=0.143  Sum_probs=229.1

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceee---e-CCceeccccccCCcceEEEECCCCCeEE
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY---T-SPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~---~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~   79 (301)
                      +..|++++-+|+   +..+|+||.    +.|+.+.||..++-.....   . .+.....+..|.+.|+|+.|+|||++||
T Consensus        13 ~~~IfSIdv~pd---g~~~aTgGq----~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA   85 (942)
T KOG0973|consen   13 EKSIFSIDVHPD---GVKFATGGQ----VLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA   85 (942)
T ss_pred             CeeEEEEEecCC---ceeEecCCc----cccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence            456899999988   667777663    3566667998876432111   1 2444556788999999999999999999


Q ss_pred             EEecCCcEEEEEEcCCc-----------cccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec
Q 022184           80 CSTTNGGCKLFEVYGGA-----------TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (301)
Q Consensus        80 ~~~~d~~i~~w~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~  148 (301)
                      +|+.|+.|.+|+.....           .....+........|...|..++|+|++.+|++++.|++|.+|+..+.+.+.
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence            99999999999988410           0111111112233488899999999999999999999999999999999999


Q ss_pred             ccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC-----CCeeEEEEccCCCcceEEEEEEeCCc
Q 022184          149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDK  223 (301)
Q Consensus       149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~  223 (301)
                      .+.+|++.|-.+.|.|-|++||+-+.|++|++|++.+-...+.+..+..     .....+.|||||.++.. ..+..+.-
T Consensus       166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las-~nA~n~~~  244 (942)
T KOG0973|consen  166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLAS-PNAVNGGK  244 (942)
T ss_pred             eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecc-hhhccCCc
Confidence            9999999999999999999999999999999999877666666654432     24788999999998321 12333456


Q ss_pred             ceEEEEEccCceEeeeeeccCCCcEEEEEcCC-----CC------------EEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GK------------YLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (301)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~~d~~i~i~~~~~~~~~~~~~~~~  286 (301)
                      ..+.|.+..+++.-..+-+|..++.++.|+|.     .+            .+|+|+.|++|.||.....+++.......
T Consensus       245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf  324 (942)
T KOG0973|consen  245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF  324 (942)
T ss_pred             ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence            78999999999988889999999999999882     12            67899999999999998888877766555


Q ss_pred             cCccEEEEEEccCCC
Q 022184          287 LGTSIALVEFCPTQR  301 (301)
Q Consensus       287 ~~~~v~~~~~spdg~  301 (301)
                       ..+|.+++|+|||.
T Consensus       325 -~~SI~DmsWspdG~  338 (942)
T KOG0973|consen  325 -NKSIVDMSWSPDGF  338 (942)
T ss_pred             -cCceeeeeEcCCCC
Confidence             78999999999983

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.1e-34  Score=218.52  Aligned_cols=269  Identities=13%  Similarity=0.126  Sum_probs=219.7

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (301)
                      +....|.-+.|+++   +.++|.++      .|.+.-||.......     .....++.+|..+|..+.||||.++|+++
T Consensus       222 ~htdEVWfl~FS~n---GkyLAsaS------kD~Taiiw~v~~d~~-----~kl~~tlvgh~~~V~yi~wSPDdryLlaC  287 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHN---GKYLASAS------KDSTAIIWIVVYDVH-----FKLKKTLVGHSQPVSYIMWSPDDRYLLAC  287 (519)
T ss_pred             hCCCcEEEEEEcCC---CeeEeecc------CCceEEEEEEecCcc-----eeeeeeeecccCceEEEEECCCCCeEEec
Confidence            34678999999988   78999977      556668999887764     22356789999999999999999999999


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC-ccEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDM  160 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~~~  160 (301)
                      +.|..+.+||+.++........      .+...+.+++|.|||..+++|+.|+.+..||++... .....+.. ..|.++
T Consensus       288 g~~e~~~lwDv~tgd~~~~y~~------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dl  360 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTGDLRHLYPS------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDL  360 (519)
T ss_pred             CchHheeeccCCcchhhhhccc------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEE
Confidence            9999999999999886322211      134678999999999999999999999999986443 34443333 469999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      +.++||+++++.+.|..|++++..+......+..+  .+++++..|.++++     +...-.+..+++||++....+..+
T Consensus       361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~d~k~-----~LvnL~~qei~LWDl~e~~lv~kY  433 (519)
T KOG0293|consen  361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISKDGKL-----ALVNLQDQEIHLWDLEENKLVRKY  433 (519)
T ss_pred             EEcCCCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcCCCcE-----EEEEcccCeeEEeecchhhHHHHh
Confidence            99999999999999999999999877666555433  36999999999997     566667889999999988888888


Q ss_pred             eccCCC--cEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          241 RLLRKP--ASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       241 ~~~~~~--v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      .+|+..  +-.-+|-- +..++++|++|++|+||+..+++++..+ .+| ...|++++|+|..
T Consensus       434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L-sGH-s~~vNcVswNP~~  494 (519)
T KOG0293|consen  434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL-SGH-SKTVNCVSWNPAD  494 (519)
T ss_pred             hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee-cCC-cceeeEEecCCCC
Confidence            888754  22335543 5589999999999999999999999988 799 9999999999953

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6e-33  Score=201.15  Aligned_cols=265  Identities=14%  Similarity=0.181  Sum_probs=210.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccc-cccCCcceEEEECCCCCeEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      .+++..++|+|..  +.++|.++      .|..++||.... ...+.    ....+ .+|+..|.+++|+|.|++|++++
T Consensus        14 ~~r~W~~awhp~~--g~ilAscg------~Dk~vriw~~~~-~~s~~----ck~vld~~hkrsVRsvAwsp~g~~La~aS   80 (312)
T KOG0645|consen   14 KDRVWSVAWHPGK--GVILASCG------TDKAVRIWSTSS-GDSWT----CKTVLDDGHKRSVRSVAWSPHGRYLASAS   80 (312)
T ss_pred             CCcEEEEEeccCC--ceEEEeec------CCceEEEEecCC-CCcEE----EEEeccccchheeeeeeecCCCcEEEEee
Confidence            4679999999652  55778766      667779999874 22221    12222 58999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc---ceecccccCCccEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL---RIILDEPKAHKSVLD  159 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~i~~  159 (301)
                      .|.++.||.-..++....     .....|...|.+++|+++|++||+++.|..|-||.+..+   ++...++.|...|..
T Consensus        81 FD~t~~Iw~k~~~efecv-----~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~  155 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFECV-----ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH  155 (312)
T ss_pred             ccceEEEeecCCCceeEE-----eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence            999999999876554221     222358899999999999999999999999999998643   455667888899999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEeCC---CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184          160 MDFSLDSEFLATTSTDGSARIWKTE---DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  236 (301)
                      +.|+|...+|++++.|.+|++|+-.   .-.+.+++.+++. .|.+++|++.|..     ++++++|++++||-..+.  
T Consensus       156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~r-----l~s~sdD~tv~Iw~~~~~--  227 (312)
T KOG0645|consen  156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSR-----LVSCSDDGTVSIWRLYTD--  227 (312)
T ss_pred             EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCce-----EEEecCCcceEeeeeccC--
Confidence            9999999999999999999999876   2356777776654 6999999999987     799999999999986632  


Q ss_pred             eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc------eeeccccccccCccEEEEEEccC
Q 022184          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM------EINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~------~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                        ....|...++.+.|.  ...|++++.|+.|++|.-...      +++......| ...|++++|+|.
T Consensus       228 --~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVNsV~w~p~  291 (312)
T KOG0645|consen  228 --LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVNSVQWNPK  291 (312)
T ss_pred             --cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccceEEEcCC
Confidence              123456788999998  448999999999999987643      2333334678 789999999994

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-34  Score=202.71  Aligned_cols=261  Identities=16%  Similarity=0.190  Sum_probs=218.4

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      .+++|.++.|+.+   +++.++.+      .|.++++|..  ....+      ..+..+|...|..++.+.|+..|++++
T Consensus        16 ~qgaV~avryN~d---GnY~ltcG------sdrtvrLWNp--~rg~l------iktYsghG~EVlD~~~s~Dnskf~s~G   78 (307)
T KOG0316|consen   16 AQGAVRAVRYNVD---GNYCLTCG------SDRTVRLWNP--LRGAL------IKTYSGHGHEVLDAALSSDNSKFASCG   78 (307)
T ss_pred             cccceEEEEEccC---CCEEEEcC------CCceEEeecc--cccce------eeeecCCCceeeeccccccccccccCC
Confidence            3688999999988   77877755      6777799864  33322      456889999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC--cceecccccCCccEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS--LRIILDEPKAHKSVLDM  160 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~  160 (301)
                      .|..+.+||+.+++...+       .-.|.+.|+.++|+.+...+++|+.|.++++||.++  .++++.+....+.|.++
T Consensus        79 gDk~v~vwDV~TGkv~Rr-------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si  151 (307)
T KOG0316|consen   79 GDKAVQVWDVNTGKVDRR-------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI  151 (307)
T ss_pred             CCceEEEEEcccCeeeee-------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence            999999999999987333       335778999999999999999999999999999975  45677777777889999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      ..+  +..|++|+.||+++.||++.|....-+.   +.+|+++.|+++++.     .+.++.++++++.|-.+++.+...
T Consensus       152 ~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc-----~La~~l~stlrLlDk~tGklL~sY  221 (307)
T KOG0316|consen  152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNC-----SLASSLDSTLRLLDKETGKLLKSY  221 (307)
T ss_pred             Eec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCE-----EEEeeccceeeecccchhHHHHHh
Confidence            887  5679999999999999999998765554   347999999999997     788899999999999999999999


Q ss_pred             eccCCCcE--EEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCcc-EEEEEEccC
Q 022184          241 RLLRKPAS--VLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS-IALVEFCPT  299 (301)
Q Consensus       241 ~~~~~~v~--~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-v~~~~~spd  299 (301)
                      ++|...-.  ..+++.....+++|++||.|++||+....++..+. .+ ... |.+++++|.
T Consensus       222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~-~~-~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS-VV-STVIVTDLSCHPT  281 (307)
T ss_pred             cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec-cC-CceeEEeeecccC
Confidence            99876433  45667777899999999999999999998887774 34 455 889999884

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-34  Score=237.03  Aligned_cols=265  Identities=15%  Similarity=0.188  Sum_probs=223.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      +.+|..++|+|.   .-.+.++-      ..+.|++|+|....        ....|.+|.++|..++|+|.+..+++|+.
T Consensus         9 SsRvKglsFHP~---rPwILtsl------HsG~IQlWDYRM~t--------li~rFdeHdGpVRgv~FH~~qplFVSGGD   71 (1202)
T KOG0292|consen    9 SSRVKGLSFHPK---RPWILTSL------HSGVIQLWDYRMGT--------LIDRFDEHDGPVRGVDFHPTQPLFVSGGD   71 (1202)
T ss_pred             cccccceecCCC---CCEEEEee------cCceeeeehhhhhh--------HHhhhhccCCccceeeecCCCCeEEecCC
Confidence            578899999987   44555543      55678999996544        24568999999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      |-.|++|+.+..++.       .....|-..|+.+.|++.-.+|+++++|.+|+||++.+++++..+.+|...|.|..|+
T Consensus        72 DykIkVWnYk~rrcl-------ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh  144 (1202)
T KOG0292|consen   72 DYKIKVWNYKTRRCL-------FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH  144 (1202)
T ss_pred             ccEEEEEecccceeh-------hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence            999999999998873       3444688999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCc----------------------------eE-EEEeecCCCCeeEEEEccCCCcceE
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGV----------------------------AW-TFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~----------------------------~~-~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      |....++++|-|.+|++||+..-+                            .+ ..+.+ |+..|+.++|+|.-..   
T Consensus       145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGVNwaAfhpTlpl---  220 (1202)
T KOG0292|consen  145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGVNWAAFHPTLPL---  220 (1202)
T ss_pred             CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc-cccccceEEecCCcce---
Confidence            999999999999999999985210                            11 22333 4456999999998886   


Q ss_pred             EEEEEeCCcceEEEEEccCceE--eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEE
Q 022184          215 FCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~  292 (301)
                        +++|++|..|++|.+...+.  +.+..+|.+.|+++-|+|...++++.++|+.|++||+.....++.+...  ...-+
T Consensus       221 --iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre--ndRFW  296 (1202)
T KOG0292|consen  221 --IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--NDRFW  296 (1202)
T ss_pred             --EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc--CCeEE
Confidence              79999999999999876543  4567889999999999999999999999999999999998888887544  46777


Q ss_pred             EEEEccCC
Q 022184          293 LVEFCPTQ  300 (301)
Q Consensus       293 ~~~~spdg  300 (301)
                      .++-+|..
T Consensus       297 ~laahP~l  304 (1202)
T KOG0292|consen  297 ILAAHPEL  304 (1202)
T ss_pred             EEEecCCc
Confidence            78777754

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=235.33  Aligned_cols=219  Identities=23%  Similarity=0.283  Sum_probs=189.6

Q ss_pred             ecccccc-CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           56 TYVFDES-EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        56 ~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ...+.+| ...|.++.|+++|+.+++++.|+.+++|+......  ..   ......|...|..++|+|+++++++++.|+
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~---~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~  225 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NL---LRELSGHTRGVSDVAFSPDGSYLLSGSDDK  225 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hh---hccccccccceeeeEECCCCcEEEEecCCc
Confidence            3444444 78899999999999999999999999999965552  11   112246888999999999999999999999


Q ss_pred             eEEEEeC-CCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcce
Q 022184          135 HLRIMHW-PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (301)
Q Consensus       135 ~i~v~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (301)
                      +|++||+ ..+..++.+.+|...|++++|+|+++++++|+.|++|++||++++++...+..|.+ .|.+++|++++..  
T Consensus       226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~--  302 (456)
T KOG0266|consen  226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNL--  302 (456)
T ss_pred             eEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCE--
Confidence            9999999 55577888889999999999999999999999999999999999999999998765 6999999999998  


Q ss_pred             EEEEEEeCCcceEEEEEccCce--EeeeeeccCC--CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184          214 LFCTVQRGDKALLAVYDISTWN--KIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (301)
Q Consensus       214 ~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~  286 (301)
                         +++++.|+.|++||+.++.  +...+..+..  +++.++|+|+++++++++.|+.+++||+..+...... .+|
T Consensus       303 ---l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~-~~~  375 (456)
T KOG0266|consen  303 ---LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY-TGH  375 (456)
T ss_pred             ---EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee-ccc
Confidence               7888999999999999998  4455555554  4999999999999999999999999999998877766 455

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-33  Score=230.35  Aligned_cols=269  Identities=15%  Similarity=0.170  Sum_probs=222.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|+.|.|.-+.  .+++|+++.      ...+++|......         ...+.||++.|.++....+|.+|++++.
T Consensus       323 ndEI~Dm~~lG~e--~~~laVATN------s~~lr~y~~~~~~---------c~ii~GH~e~vlSL~~~~~g~llat~sK  385 (775)
T KOG0319|consen  323 NDEILDMKFLGPE--ESHLAVATN------SPELRLYTLPTSY---------CQIIPGHTEAVLSLDVWSSGDLLATGSK  385 (775)
T ss_pred             chhheeeeecCCc--cceEEEEeC------CCceEEEecCCCc---------eEEEeCchhheeeeeecccCcEEEEecC
Confidence            4567888887432  567777653      3345777433222         1257899999999997677899999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCeEEEEeCCCcce---------ecccccC
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRI---------ILDEPKA  153 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~---------~~~~~~~  153 (301)
                      |.++++|.++++.......   .....|...|.+++++.. ..+|++++.|+++++|++...+.         ......|
T Consensus       386 D~svilWr~~~~~~~~~~~---a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH  462 (775)
T KOG0319|consen  386 DKSVILWRLNNNCSKSLCV---AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH  462 (775)
T ss_pred             CceEEEEEecCCcchhhhh---hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence            9999999995544322221   233458889999999874 46899999999999999976221         1123457


Q ss_pred             CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      ...|++++++|+.+++||||.|.+.+||++++......+.+|.. .+.++.|+|..+.     +++++.|.+|+||.+.+
T Consensus       463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-Gvw~V~Fs~~dq~-----laT~SgD~TvKIW~is~  536 (775)
T KOG0319|consen  463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-GVWCVSFSKNDQL-----LATCSGDKTVKIWSIST  536 (775)
T ss_pred             cccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc-ceEEEEeccccce-----eEeccCCceEEEEEecc
Confidence            78999999999999999999999999999999998999988766 5999999999987     79999999999999999


Q ss_pred             ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      ..++.++.+|...|..+.|-.+++.|++++.||.|++|++++.+++..+ ..| ...|++++-+|++
T Consensus       537 fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl-D~H-~DrvWaL~~~~~~  601 (775)
T KOG0319|consen  537 FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL-DAH-NDRVWALSVSPLL  601 (775)
T ss_pred             ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh-hhc-cceeEEEeecCcc
Confidence            9999999999999999999999999999999999999999999999988 689 9999999988864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5e-34  Score=228.50  Aligned_cols=267  Identities=12%  Similarity=0.146  Sum_probs=226.8

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      +.+|.|+.++|.   ...++.+-      ..|.+.||+++.+..        ...++-..-+|.+..|-+-.+++++|+.
T Consensus        13 SdRVKsVd~HPt---ePw~la~L------ynG~V~IWnyetqtm--------VksfeV~~~PvRa~kfiaRknWiv~GsD   75 (794)
T KOG0276|consen   13 SDRVKSVDFHPT---EPWILAAL------YNGDVQIWNYETQTM--------VKSFEVSEVPVRAAKFIARKNWIVTGSD   75 (794)
T ss_pred             CCceeeeecCCC---CceEEEee------ecCeeEEEeccccee--------eeeeeecccchhhheeeeccceEEEecC
Confidence            567999999987   33444322      556779999987652        2234455788999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC-cceecccccCCccEEEEEe
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~  162 (301)
                      |..|++|+..+.+...       ....|...|++++.+|.-.+++++++|-.|++||++. ..+.+.+.+|...|.+++|
T Consensus        76 D~~IrVfnynt~ekV~-------~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f  148 (794)
T KOG0276|consen   76 DMQIRVFNYNTGEKVK-------TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF  148 (794)
T ss_pred             CceEEEEecccceeeE-------EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence            9999999999987632       2334889999999999999999999999999999975 4566778899899999999


Q ss_pred             cC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       163 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      +| |.+.+++++-|++|++|.+.+..+..++.+|.. .|+++.+-+-|..++   ++++++|..+++||..+..+++++.
T Consensus       149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpy---lIsgaDD~tiKvWDyQtk~CV~TLe  224 (794)
T KOG0276|consen  149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPY---LISGADDLTIKVWDYQTKSCVQTLE  224 (794)
T ss_pred             cCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcce---EEecCCCceEEEeecchHHHHHHhh
Confidence            99 677999999999999999999999999997765 599999999998776   6899999999999999999999999


Q ss_pred             ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      +|...|+.+.|+|.-..+++|++||+++||+..+-++...+.- . ...|++++-.+.+
T Consensus       225 GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-g-leRvW~I~~~k~~  281 (794)
T KOG0276|consen  225 GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-G-LERVWCIAAHKGD  281 (794)
T ss_pred             cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc-C-CceEEEEeecCCC
Confidence            9999999999999999999999999999999999887776632 2 4678887765543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-32  Score=216.41  Aligned_cols=265  Identities=18%  Similarity=0.218  Sum_probs=222.0

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~   82 (301)
                      .+||..++|..+  +.+++|+|.+     .++..+++.||....        .-.+.||...|+++.|-|... ++++++
T Consensus       103 aG~I~Di~Wd~d--s~RI~avGEG-----rerfg~~F~~DSG~S--------vGei~GhSr~ins~~~KpsRPfRi~T~s  167 (603)
T KOG0318|consen  103 AGPIKDISWDFD--SKRIAAVGEG-----RERFGHVFLWDSGNS--------VGEITGHSRRINSVDFKPSRPFRIATGS  167 (603)
T ss_pred             ccccccceeCCC--CcEEEEEecC-----ccceeEEEEecCCCc--------cceeeccceeEeeeeccCCCceEEEecc
Confidence            589999999955  4789999885     444557888876542        235789999999999999776 789999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc---cCCccEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP---KAHKSVLD  159 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~i~~  159 (301)
                      .|++|.+|+=...+.       ......|..-|+++.|+|||+++++++.||.+.+||-.+++.+..+.   +|.+.|.+
T Consensus       168 dDn~v~ffeGPPFKF-------k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa  240 (603)
T KOG0318|consen  168 DDNTVAFFEGPPFKF-------KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA  240 (603)
T ss_pred             CCCeEEEeeCCCeee-------eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE
Confidence            999999998544332       12233477889999999999999999999999999999999888776   78899999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC--CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe
Q 022184          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  237 (301)
                      ++|+||++.+++++.|.+++|||+.+.+++.++.....  ..--.+.|. .+.      +++.+.+|.|.+++......+
T Consensus       241 lsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~------lItVSl~G~in~ln~~d~~~~  313 (603)
T KOG0318|consen  241 LSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDH------LITVSLSGTINYLNPSDPSVL  313 (603)
T ss_pred             EEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCe------EEEEEcCcEEEEecccCCChh
Confidence            99999999999999999999999999999988875443  223345565 333      688888999999999999998


Q ss_pred             eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      ..+.+|...|+++..+||+++|++|+.||.|.-|+..++..-+.....| ...|.+++-+.
T Consensus       314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h-~nqI~~~~~~~  373 (603)
T KOG0318|consen  314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH-TNQIKGMAASE  373 (603)
T ss_pred             heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc-cceEEEEeecC
Confidence            9999999999999999999999999999999999999998777666677 77888877665

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.3e-34  Score=230.90  Aligned_cols=240  Identities=17%  Similarity=0.225  Sum_probs=206.2

Q ss_pred             cEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC-CeEEEEecCCcEEEEEEcCCccc
Q 022184           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATD   98 (301)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~~~~   98 (301)
                      .++++|+      .|+++++|+++.+....    .......+|+..|.+++++..+ .+|++++.|.++++|++...+..
T Consensus       378 ~llat~s------KD~svilWr~~~~~~~~----~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~  447 (775)
T KOG0319|consen  378 DLLATGS------KDKSVILWRLNNNCSKS----LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET  447 (775)
T ss_pred             cEEEEec------CCceEEEEEecCCcchh----hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccc
Confidence            4666655      78888999995544322    2344568999999999998755 48899999999999999873221


Q ss_pred             cc--cccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCC
Q 022184           99 IN--LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG  176 (301)
Q Consensus        99 ~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  176 (301)
                      ..  ..........|...|++++.+|+.++|++|+.|.+.++|++++......+.+|...|+++.|+|..+.++|+|.|.
T Consensus       448 ~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~  527 (775)
T KOG0319|consen  448 AFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK  527 (775)
T ss_pred             cccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCc
Confidence            11  1111123345788999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCC
Q 022184          177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG  256 (301)
Q Consensus       177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~  256 (301)
                      +|+||.+.+..++.++.+|.. .|..+.|-.+++.     +++++.||.|++|++++.+++..+..|+..|++++.+|..
T Consensus       528 TvKIW~is~fSClkT~eGH~~-aVlra~F~~~~~q-----liS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~  601 (775)
T KOG0319|consen  528 TVKIWSISTFSCLKTFEGHTS-AVLRASFIRNGKQ-----LISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL  601 (775)
T ss_pred             eEEEEEeccceeeeeecCccc-eeEeeeeeeCCcE-----EEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc
Confidence            999999999999999998765 6999999999998     8999999999999999999999999999999999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCC
Q 022184          257 KYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       257 ~~l~~~~~d~~i~i~~~~~  275 (301)
                      .++++|+.||.|.+|.=.+
T Consensus       602 ~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  602 DMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             ceeEecCCCeEEEEeecCc
Confidence            9999999999999997544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=5.2e-33  Score=200.51  Aligned_cols=264  Identities=16%  Similarity=0.213  Sum_probs=223.0

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~   81 (301)
                      ...+|.+++|+.+   +..++.|.      .+.++.+|..+.....      ......+|.+.|..++|+| +.+.|+++
T Consensus        19 ~~~~v~Sv~wn~~---g~~lasgs------~dktv~v~n~e~~r~~------~~~~~~gh~~svdql~w~~~~~d~~ata   83 (313)
T KOG1407|consen   19 HVQKVHSVAWNCD---GTKLASGS------FDKTVSVWNLERDRFR------KELVYRGHTDSVDQLCWDPKHPDLFATA   83 (313)
T ss_pred             hhhcceEEEEccc---Cceeeecc------cCCceEEEEecchhhh------hhhcccCCCcchhhheeCCCCCcceEEe
Confidence            3578999999988   66777766      7778899999876321      2445789999999999998 55689999


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      +.|.+|++||+..++......        ..+.-.-+.|+|+|.++++++.|..|...|.++.+..... .....+..++
T Consensus        84 s~dk~ir~wd~r~~k~~~~i~--------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~  154 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSGKCTARIE--------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEIS  154 (313)
T ss_pred             cCCceEEEEEeccCcEEEEee--------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeee
Confidence            999999999999887643332        2234456899999999999999999999999887765443 3445788899


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      |+-++.+++.....|.|.|.....-+++..++.|.. ...|+.|+|+|++     +++|+.|..+.+||+...-+++.+.
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~Gry-----fA~GsADAlvSLWD~~ELiC~R~is  228 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRY-----FATGSADALVSLWDVDELICERCIS  228 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEeccccccccccccCCc-ceEEEEECCCCce-----EeeccccceeeccChhHhhhheeec
Confidence            998777777777779999999999999999988764 5889999999998     7999999999999999888888899


Q ss_pred             ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      .+.-+|+.+.||.||++||+|++|..|-|=++++|..+..+.  + .++...++|+|.
T Consensus       229 RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~-~~~t~tVAWHPk  283 (313)
T KOG1407|consen  229 RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--C-EGPTFTVAWHPK  283 (313)
T ss_pred             cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--c-cCCceeEEecCC
Confidence            999999999999999999999999999999999999988764  4 789999999996

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=5.4e-32  Score=226.01  Aligned_cols=253  Identities=9%  Similarity=0.100  Sum_probs=184.3

Q ss_pred             CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC-CCeEEEEecCCcEEEEEEcCCccccc-cccccCCCC
Q 022184           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDIN-LLAKKMPPL  109 (301)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~~w~~~~~~~~~~-~~~~~~~~~  109 (301)
                      +..+.+++|......        ....+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+........ .........
T Consensus        51 G~~gvI~L~~~~r~~--------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~  122 (568)
T PTZ00420         51 GLIGAIRLENQMRKP--------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK  122 (568)
T ss_pred             CceeEEEeeecCCCc--------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence            356777888764321        23457899999999999996 78999999999999999976432111 000001123


Q ss_pred             CCCCCeeEEEEeeCCCE-EEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 022184          110 QDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (301)
Q Consensus       110 ~~~~~v~~~~~s~~~~~-l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  188 (301)
                      .|...|.+++|+|++.. |++++.|+.|++||+++++....+. +...|.+++|+|+|.+|++++.|+.|+|||+++++.
T Consensus       123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence            47789999999998875 5788999999999999988766554 557899999999999999999999999999999999


Q ss_pred             EEEEeecCCCC----eeEEEEccCCCcceEEEEEEeCCc----ceEEEEEccC-ceEeeeeeccC--CCcEEEEEcCCCC
Q 022184          189 WTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDK----ALLAVYDIST-WNKIGHKRLLR--KPASVLSISLDGK  257 (301)
Q Consensus       189 ~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~-~~~~~~~~~~~--~~v~~~~~s~~~~  257 (301)
                      +..+..|....    +....|++++.+     +++++.+    ++|++||+++ .+++.....+.  ..+......+++.
T Consensus       202 i~tl~gH~g~~~s~~v~~~~fs~d~~~-----IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~  276 (568)
T PTZ00420        202 ASSFHIHDGGKNTKNIWIDGLGGDDNY-----ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL  276 (568)
T ss_pred             EEEEecccCCceeEEEEeeeEcCCCCE-----EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence            88887765432    122345688876     4554444    4899999995 44554433222  2222333345688


Q ss_pred             EEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          258 YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       258 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      ++++|+.|+.|++|++..+.........+ ..+..+++|.|.
T Consensus       277 l~lsGkGD~tIr~~e~~~~~~~~l~~~~s-~~p~~g~~f~Pk  317 (568)
T PTZ00420        277 IYLIGKGDGNCRYYQHSLGSIRKVNEYKS-CSPFRSFGFLPK  317 (568)
T ss_pred             EEEEEECCCeEEEEEccCCcEEeeccccc-CCCccceEEccc
Confidence            99999999999999998775443332234 678899999986

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-33  Score=231.11  Aligned_cols=251  Identities=13%  Similarity=0.171  Sum_probs=203.6

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCC----------------------------cc-e-----
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK----------------------------TT-S-----   48 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----------------------------~~-~-----   48 (301)
                      ..+.|.||.|++|   +.|+|.||      .|+.|+||.+-..                            .. .     
T Consensus       266 h~gaIw~mKFS~D---GKyLAsaG------eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  266 HKGAIWAMKFSHD---GKYLASAG------EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             cCCcEEEEEeCCC---CceeeecC------CCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            4688999999999   88999988      7888899987540                            00 0     


Q ss_pred             ------------------eeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC
Q 022184           49 ------------------VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (301)
Q Consensus        49 ------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  110 (301)
                                        ....+.+...+.||.+.|.++.|+.++ +|++++.|.+|+||++...++        +..+.
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~C--------L~~F~  407 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKEC--------LKVFS  407 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcce--------eeEEe
Confidence                              000123456788999999999999754 899999999999999998877        77788


Q ss_pred             CCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 022184          111 DAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (301)
Q Consensus       111 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  189 (301)
                      |...|+|++|+| |.++|++|+-||.|+||++...+.+.. ..-+.-|++++|.|||+..+.|+.+|.+++|++...+..
T Consensus       408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence            999999999999 899999999999999999987776543 344578999999999999999999999999999887766


Q ss_pred             EEEeecC-------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCC--CcEEEEEcCCCCEEE
Q 022184          190 TFLTRNS-------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK--PASVLSISLDGKYLA  260 (301)
Q Consensus       190 ~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~  260 (301)
                      .......       ...|+.+.|.|....-    ++..+.|..|+|||.++...+..+++...  .-....|+.||++|+
T Consensus       487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~----vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV  562 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDE----VLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV  562 (712)
T ss_pred             EeeeEeeccCccccCceeeeeEecCCCCCe----EEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence            5543211       2269999999865531    46667899999999988888877776543  334568999999999


Q ss_pred             EeeCCCcEEEEeCCCc
Q 022184          261 MGSKDGDICVVDVKKM  276 (301)
Q Consensus       261 ~~~~d~~i~i~~~~~~  276 (301)
                      +++.|..|++|+....
T Consensus       563 s~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  563 SASEDSWVYIWKNDSF  578 (712)
T ss_pred             EeecCceEEEEeCCCC
Confidence            9999999999998543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-33  Score=210.02  Aligned_cols=274  Identities=13%  Similarity=0.180  Sum_probs=225.2

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      +..+-|..|+||   +++++.|.      .|+.+.+|+|-...-...-...+.-.+--+.++|.|+.|+.|...||+|+.
T Consensus       213 KSh~EcA~FSPD---gqyLvsgS------vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq  283 (508)
T KOG0275|consen  213 KSHVECARFSPD---GQYLVSGS------VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ  283 (508)
T ss_pred             ccchhheeeCCC---CceEeecc------ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc
Confidence            456789999999   78999876      888999999965432111122233345567899999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      ||.|++|.++++.+..++..      .|...|+|+.||.|+..+++++.|.++++--+++|+.+..+.+|.+.|+...|.
T Consensus       284 DGkIKvWri~tG~ClRrFdr------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft  357 (508)
T KOG0275|consen  284 DGKIKVWRIETGQCLRRFDR------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT  357 (508)
T ss_pred             CCcEEEEEEecchHHHHhhh------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence            99999999999988544432      377899999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeec-CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      +||..+++++.||+|++|+.++.+++.+++.. .+.+|..+..-|.....    ++.....++|.+.++. ++.++.+..
T Consensus       358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh----~iVCNrsntv~imn~q-GQvVrsfsS  432 (508)
T KOG0275|consen  358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH----FIVCNRSNTVYIMNMQ-GQVVRSFSS  432 (508)
T ss_pred             CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce----EEEEcCCCeEEEEecc-ceEEeeecc
Confidence            99999999999999999999999999888643 45578888888876543    3556777889999986 455555543


Q ss_pred             c---CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          243 L---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       243 ~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      .   .+..-+.+.||.|.++++.++|+.++.|.+.+|++.+.+ ..| ...|-.++.+|.
T Consensus       433 GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl-~Vh-EkdvIGl~HHPH  490 (508)
T KOG0275|consen  433 GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL-PVH-EKDVIGLTHHPH  490 (508)
T ss_pred             CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee-ecc-cccccccccCcc
Confidence            2   345667789999999999999999999999999988877 567 666777777764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-33  Score=200.44  Aligned_cols=276  Identities=14%  Similarity=0.164  Sum_probs=211.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeC-CCcceeeeCCceeccccccCCcceEEEECCCC-CeEEEE
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFD-PKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCS   81 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~   81 (301)
                      +..=+++.|+|--++...+|++..-+.. ..|.+.|.+.+ +.+-..      ...+ .-.+.+..++|+++. +.++++
T Consensus         8 gf~GysvqfSPf~~nrLavAt~q~yGl~-G~G~L~ile~~~~~gi~e------~~s~-d~~D~LfdV~Wse~~e~~~~~a   79 (311)
T KOG0277|consen    8 GFHGYSVQFSPFVENRLAVATAQHYGLA-GNGRLFILEVTDPKGIQE------CQSY-DTEDGLFDVAWSENHENQVIAA   79 (311)
T ss_pred             CcccceeEecccccchhheeehhhcccc-cCceEEEEecCCCCCeEE------EEee-ecccceeEeeecCCCcceEEEE
Confidence            3445788999876655555555543332 33444454443 222111      1111 236789999999965 477888


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  160 (301)
                      +.||++++||+.....+..      ...+|...|.++.|++ ++..+++++.|++|++|+....+.++++.+|...|...
T Consensus        80 ~GDGSLrl~d~~~~s~Pi~------~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a  153 (311)
T KOG0277|consen   80 SGDGSLRLFDLTMPSKPIH------KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA  153 (311)
T ss_pred             ecCceEEEeccCCCCcchh------HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE
Confidence            9999999999655443222      2224788999999999 66778888999999999999999999999999999999


Q ss_pred             EecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Eee
Q 022184          161 DFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIG  238 (301)
Q Consensus       161 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~  238 (301)
                      +|+| ..+.+++++.|+++++||++.......+..|. ..+.++.|+.-...+    +++++.|+.|+.||+++.+ ++.
T Consensus       154 ~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~v----l~Tg~vd~~vr~wDir~~r~pl~  228 (311)
T KOG0277|consen  154 AFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNV----LATGGVDNLVRGWDIRNLRTPLF  228 (311)
T ss_pred             ecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-ceeEeecccccCCcE----EEecCCCceEEEEehhhccccce
Confidence            9999 67799999999999999998765555566665 469999999877763    7999999999999998764 467


Q ss_pred             eeeccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          239 HKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       239 ~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      .+.+|.-.|+.++|||. ...|++++.|-+++|||...+.........| ...|..+.||+-
T Consensus       229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H-tEFv~g~Dws~~  289 (311)
T KOG0277|consen  229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH-TEFVCGLDWSLF  289 (311)
T ss_pred             eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc-ceEEeccccccc
Confidence            77888899999999996 4789999999999999998766554444567 888999998863

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=3.5e-33  Score=206.37  Aligned_cols=279  Identities=13%  Similarity=0.241  Sum_probs=226.9

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCc----------ceeeeCCceeccccccCCcceEEEE
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT----------TSVYTSPLVTYVFDESEGDPMTIAV   71 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~~~h~~~v~~~~~   71 (301)
                      +.++|+.|.+|++|   +.++|+|+      .|..|+|++....-          +.-...--...++-.|.++|+++.|
T Consensus       110 ~HK~~cR~aafs~D---G~lvATGs------aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F  180 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPD---GSLVATGS------ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF  180 (430)
T ss_pred             ecccceeeeeeCCC---CcEEEccC------CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence            35789999999999   78999987      67778998876211          0000111234567889999999999


Q ss_pred             CCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc-
Q 022184           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-  150 (301)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-  150 (301)
                      +|....|++++.|++|++||+.......     ....++...+|.++.|+|.|.+|++|.+...+++||+++.++...- 
T Consensus       181 HPre~ILiS~srD~tvKlFDfsK~saKr-----A~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  181 HPRETILISGSRDNTVKLFDFSKTSAKR-----AFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             cchhheEEeccCCCeEEEEecccHHHHH-----HHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence            9999999999999999999997654321     2344556689999999999999999999999999999998775432 


Q ss_pred             --ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-cCCCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184          151 --PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (301)
Q Consensus       151 --~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (301)
                        .+|.+.|+++.+++.+++.++++.||.|++||--+++++.++.. |.+..|.+..|..+|++     +++++.|..++
T Consensus       256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky-----iLsSG~DS~vk  330 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY-----ILSSGKDSTVK  330 (430)
T ss_pred             cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE-----EeecCCcceee
Confidence              34567899999999999999999999999999999999988864 44557999999999998     79999999999


Q ss_pred             EEEccCceEeeeeeccC-----CCcEEEEEcCCCCEEEEeeC-CCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          228 VYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       228 ~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      +|.+.+++.+....+..     ..-+...|+....|++.-.+ .+.+.-||.++.........+| .+.+..+..||.+
T Consensus       331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH-n~a~R~i~HSP~~  408 (430)
T KOG0640|consen  331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH-NGAVRWIVHSPVE  408 (430)
T ss_pred             eeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCC-CCCceEEEeCCCC
Confidence            99999999887776542     22345667777778777654 4689999999999888887889 9999999999865

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.1e-32  Score=214.44  Aligned_cols=229  Identities=21%  Similarity=0.310  Sum_probs=198.0

Q ss_pred             ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeE
Q 022184           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (301)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (301)
                      ..+.+|.++|.+++|+|++++|++++.||.+++|++.+.+....       ...|...+..+.|+|+++.+++++.+|.|
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i   75 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-------LKGHTGPVRDVAASADGTYLASGSSDKTI   75 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE-------EecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence            34678999999999999999999999999999999987653211       12355678899999999999999999999


Q ss_pred             EEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEE
Q 022184          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (301)
Q Consensus       137 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (301)
                      ++|++.+++....+..+...+.++.|+|+++++++++.|+.+++||+++++....+..+ ...+.++.|+|++..     
T Consensus        76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-----  149 (289)
T cd00200          76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPDGTF-----  149 (289)
T ss_pred             EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEEEEcCcCCE-----
Confidence            99999987777777777779999999999888988888999999999988888877744 456999999999775     


Q ss_pred             EEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEE
Q 022184          217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       217 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~  296 (301)
                      +++++.++.|.+||+++++.+..+..+...+.++.|+|+++.+++++.|+.|++||+++++....+ ..| ...+.+++|
T Consensus       150 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~-~~~i~~~~~  227 (289)
T cd00200         150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-RGH-ENGVNSVAF  227 (289)
T ss_pred             EEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch-hhc-CCceEEEEE
Confidence            566667999999999988888888888889999999999999999999999999999998887776 456 779999999


Q ss_pred             ccCC
Q 022184          297 CPTQ  300 (301)
Q Consensus       297 spdg  300 (301)
                      +|++
T Consensus       228 ~~~~  231 (289)
T cd00200         228 SPDG  231 (289)
T ss_pred             cCCC
Confidence            9975

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.6e-32  Score=206.39  Aligned_cols=265  Identities=13%  Similarity=0.102  Sum_probs=222.2

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      .+-|.|+++-|.   ...+++|+      .|.+++||++....        ....+.||-..|..+++|+-..|+.+++.
T Consensus       151 lgWVr~vavdP~---n~wf~tgs------~DrtikIwDlatg~--------LkltltGhi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  151 LGWVRSVAVDPG---NEWFATGS------ADRTIKIWDLATGQ--------LKLTLTGHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             cceEEEEeeCCC---ceeEEecC------CCceeEEEEcccCe--------EEEeecchhheeeeeeecccCceEEEecC
Confidence            466899999976   56888877      67778999886433        24568899999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      |+.|+.||++.++...       ....|-..|.|++.+|.-..|++|+.|.+++|||+++...+..+.+|..+|..+.+.
T Consensus       214 dk~VKCwDLe~nkvIR-------~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~  286 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIR-------HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ  286 (460)
T ss_pred             CCeeEEEechhhhhHH-------HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence            9999999999887632       233467899999999998999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  243 (301)
                      |-...+++|+.|++|++||++.++....+..|. ..+.+++.+|....     +++++.| .|+-|++..+..+..+.+|
T Consensus       287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hk-ksvral~lhP~e~~-----fASas~d-nik~w~~p~g~f~~nlsgh  359 (460)
T KOG0285|consen  287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHK-KSVRALCLHPKENL-----FASASPD-NIKQWKLPEGEFLQNLSGH  359 (460)
T ss_pred             cCCCceEEecCCceEEEeeeccCceeEeeeccc-ceeeEEecCCchhh-----hhccCCc-cceeccCCccchhhccccc
Confidence            988899999999999999999999988887554 46999999999875     4555544 7999999999998889999


Q ss_pred             CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc----ccc--cCccEEEEEEccCC
Q 022184          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----RLH--LGTSIALVEFCPTQ  300 (301)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----~~~--~~~~v~~~~~spdg  300 (301)
                      +.-+.+++...|+ ++++|+.+|.+.+||.+++...+...    .+.  ....|.+.+|...|
T Consensus       360 ~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg  421 (460)
T KOG0285|consen  360 NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG  421 (460)
T ss_pred             cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence            9999999998876 78999999999999999886554431    111  13457777776554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.2e-34  Score=213.41  Aligned_cols=252  Identities=14%  Similarity=0.175  Sum_probs=204.9

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ....|+|+++-.+     .++.|.      .|++++||+.+..        .....+.||++.|.|+.|  +.+.+++|+
T Consensus       196 ~skgVYClQYDD~-----kiVSGl------rDnTikiWD~n~~--------~c~~~L~GHtGSVLCLqy--d~rviisGS  254 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE-----KIVSGL------RDNTIKIWDKNSL--------ECLKILTGHTGSVLCLQY--DERVIVSGS  254 (499)
T ss_pred             cCCceEEEEecch-----hhhccc------ccCceEEeccccH--------HHHHhhhcCCCcEEeeec--cceEEEecC
Confidence            4567999998755     555544      7889999987532        234568999999999999  466999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce---ecccccCCccEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHKSVLD  159 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~i~~  159 (301)
                      .|.+|++||+++++..       ...+.|...|..+.|+.  .++++++.|.++.+||+.....   ...+.+|...|..
T Consensus       255 SDsTvrvWDv~tge~l-------~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv  325 (499)
T KOG0281|consen  255 SDSTVRVWDVNTGEPL-------NTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  325 (499)
T ss_pred             CCceEEEEeccCCchh-------hHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence            9999999999999873       23445778999999974  4899999999999999976543   2345678889999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  239 (301)
                      +.|+  .+++++++.|.+|++|++.+++.+..+.+|..+ |.|+.+  .++.     +++|+.|.+|++||+..|.+++.
T Consensus       326 Vdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG-IAClQY--r~rl-----vVSGSSDntIRlwdi~~G~cLRv  395 (499)
T KOG0281|consen  326 VDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG-IACLQY--RDRL-----VVSGSSDNTIRLWDIECGACLRV  395 (499)
T ss_pred             eccc--cceEEEecCCceEEEEeccceeeehhhhccccc-ceehhc--cCeE-----EEecCCCceEEEEeccccHHHHH
Confidence            9996  669999999999999999999999999887654 666655  4554     78999999999999999999999


Q ss_pred             eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecc--------ccccccCccEEEEEEc
Q 022184          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW--------SKRLHLGTSIALVEFC  297 (301)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~--------~~~~~~~~~v~~~~~s  297 (301)
                      +.+|+.-|.++.|  |.+.+++|+.||+|++||+..+...+.        ....| .+.|..+.|.
T Consensus       396 LeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQFD  458 (499)
T KOG0281|consen  396 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQFD  458 (499)
T ss_pred             HhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEeec
Confidence            9999999999999  567899999999999999987643311        11346 6778888774

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-32  Score=211.60  Aligned_cols=264  Identities=17%  Similarity=0.216  Sum_probs=206.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      .-.+|.+++|+|... ..++++++        -.++||.-....  .      ...+....+.|.++.|-.||++|++|+
T Consensus        25 e~~~vssl~fsp~~P-~d~aVt~S--------~rvqly~~~~~~--~------~k~~srFk~~v~s~~fR~DG~LlaaGD   87 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHP-YDFAVTSS--------VRVQLYSSVTRS--V------RKTFSRFKDVVYSVDFRSDGRLLAAGD   87 (487)
T ss_pred             ccCcceeEecCCCCC-CceEEecc--------cEEEEEecchhh--h------hhhHHhhccceeEEEeecCCeEEEccC
Confidence            347899999997432 23444422        123455433222  1      223455678899999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      ..|.|++||..+... .      .....|..++..+.|+| ++..+++|++|+.+++||+.+......+.+|.+.|.+.+
T Consensus        88 ~sG~V~vfD~k~r~i-L------R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~  160 (487)
T KOG0310|consen   88 ESGHVKVFDMKSRVI-L------RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD  160 (487)
T ss_pred             CcCcEEEeccccHHH-H------HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence            999999999554222 1      12234788999999999 566788899999999999999887668889999999999


Q ss_pred             ecCCCc-EEEEEeCCCcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Eee
Q 022184          162 FSLDSE-FLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIG  238 (301)
Q Consensus       162 ~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~  238 (301)
                      |+|-.. +++||+.||.|++||++.. ..+.++.  ++.+|..+.+-|.|..     +++++ ...+++||+-++. .+.
T Consensus       161 ~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsgs~-----iasAg-Gn~vkVWDl~~G~qll~  232 (487)
T KOG0310|consen  161 ISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLALPSGSL-----IASAG-GNSVKVWDLTTGGQLLT  232 (487)
T ss_pred             cccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEEcCCCCE-----EEEcC-CCeEEEEEecCCceehh
Confidence            999544 8999999999999999987 4455554  6678999999999986     44444 5589999998554 455


Q ss_pred             eeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          239 HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       239 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ....|...|+|+++..++..|++++-|+.|++||+.+.+.+....  . .++|-+++.+||++
T Consensus       233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~-~~pvLsiavs~dd~  292 (487)
T KOG0310|consen  233 SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--Y-PGPVLSIAVSPDDQ  292 (487)
T ss_pred             hhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--c-ccceeeEEecCCCc
Confidence            555599999999999999999999999999999999988888753  3 78999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-33  Score=208.26  Aligned_cols=234  Identities=18%  Similarity=0.237  Sum_probs=210.0

Q ss_pred             CceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec
Q 022184           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (301)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (301)
                      |...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....       ...|...+..++|+..|+++++++.
T Consensus        98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~-------LrGHt~sv~di~~~a~Gk~l~tcSs  170 (406)
T KOG0295|consen   98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERS-------LRGHTDSVFDISFDASGKYLATCSS  170 (406)
T ss_pred             CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhh-------hhccccceeEEEEecCccEEEecCC
Confidence            345667888999999999999999999999999999999999987222       2247778999999999999999999


Q ss_pred             CCeEEEEeCCC-cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          133 DGHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       133 dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      |-.+++||..+ .+++..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++.++.++..|.+ .+..++.+.||..
T Consensus       171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti  249 (406)
T KOG0295|consen  171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTI  249 (406)
T ss_pred             ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecCCeeE
Confidence            99999999987 556667778888999999999999999999999999999999999999997755 7999999999997


Q ss_pred             ceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCC---------------CCEEEEeeCCCcEEEEeCCCc
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD---------------GKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~d~~i~i~~~~~~  276 (301)
                           +++++.|.+|++|-+.++++...+..|+.+|.+++|.|.               ++++.+++.|++|++||+.++
T Consensus       250 -----~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg  324 (406)
T KOG0295|consen  250 -----IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG  324 (406)
T ss_pred             -----EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence                 799999999999999999888889999999999999763               258999999999999999999


Q ss_pred             eeeccccccccCccEEEEEEccCCC
Q 022184          277 EINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       277 ~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .++..+ .+| ...|.+++|+|-||
T Consensus       325 ~cL~tL-~gh-dnwVr~~af~p~Gk  347 (406)
T KOG0295|consen  325 MCLFTL-VGH-DNWVRGVAFSPGGK  347 (406)
T ss_pred             eEEEEE-ecc-cceeeeeEEcCCCe
Confidence            999888 789 99999999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.7e-31  Score=237.91  Aligned_cols=234  Identities=18%  Similarity=0.213  Sum_probs=190.4

Q ss_pred             cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeE
Q 022184           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHL  136 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i  136 (301)
                      .+..|.+.|.+++|+|++++|++++.|+.|++|+.................+.+...+.+++|+| ++.+|++++.||.|
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            35568999999999999999999999999999997642111110000011123456789999988 57899999999999


Q ss_pred             EEEeCCCcceecccccCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEc-cCCCcceE
Q 022184          137 RIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS-KDGTKPFL  214 (301)
Q Consensus       137 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~  214 (301)
                      ++||+.+++.+..+..|.+.|++++|+| ++.+|++++.|+.|++||++++..+..+..+  ..+.++.|+ +++..   
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g~~---  632 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESGRS---  632 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCCCE---
Confidence            9999999988888888989999999997 7889999999999999999999888877643  358999995 45766   


Q ss_pred             EEEEEeCCcceEEEEEccCce-EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc------eeecccccccc
Q 022184          215 FCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM------EINHWSKRLHL  287 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~------~~~~~~~~~~~  287 (301)
                        +++++.|+.|++||+++.+ .+..+..|...|..+.|. ++.+|++++.|+.|++||+..+      +.+..+ .+| 
T Consensus       633 --latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh-  707 (793)
T PLN00181        633 --LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGH-  707 (793)
T ss_pred             --EEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCC-
Confidence              7889999999999998765 455677888999999997 7789999999999999999753      344444 578 


Q ss_pred             CccEEEEEEccCCC
Q 022184          288 GTSIALVEFCPTQR  301 (301)
Q Consensus       288 ~~~v~~~~~spdg~  301 (301)
                      ...+..++|+|+|+
T Consensus       708 ~~~i~~v~~s~~~~  721 (793)
T PLN00181        708 TNVKNFVGLSVSDG  721 (793)
T ss_pred             CCCeeEEEEcCCCC
Confidence            88899999999874

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.8e-33  Score=198.90  Aligned_cols=243  Identities=18%  Similarity=0.155  Sum_probs=195.7

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~   82 (301)
                      ...++.++|++..+  ++++++.      .||.+++|+......       +...++.|..+|.++.|++ .++.+++++
T Consensus        60 ~D~LfdV~Wse~~e--~~~~~a~------GDGSLrl~d~~~~s~-------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS  124 (311)
T KOG0277|consen   60 EDGLFDVAWSENHE--NQVIAAS------GDGSLRLFDLTMPSK-------PIHKFKEHKREVYSVDWNTVRRRIFLTSS  124 (311)
T ss_pred             ccceeEeeecCCCc--ceEEEEe------cCceEEEeccCCCCc-------chhHHHhhhhheEEeccccccceeEEeec
Confidence            45678899997754  4444433      466779998544332       3456899999999999998 566778889


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      .|++|++|+...+.....       ...|...|...+|+| .++.+++++.|+.+++||++.......++.|..+|.++.
T Consensus       125 WD~TiKLW~~~r~~Sv~T-------f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cd  197 (311)
T KOG0277|consen  125 WDGTIKLWDPNRPNSVQT-------FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCD  197 (311)
T ss_pred             cCCceEeecCCCCcceEe-------ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeec
Confidence            999999999876655222       334778999999999 788999999999999999986555556888888999999


Q ss_pred             ecC-CCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Eee
Q 022184          162 FSL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIG  238 (301)
Q Consensus       162 ~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~  238 (301)
                      |+. +.+.++|++.|+.|+.||++.-+ ++..+.+ +...|+.++|||....+    +++++.|-++++||...+. .+.
T Consensus       198 w~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g-h~~AVRkvk~Sph~~~l----LaSasYDmT~riw~~~~~ds~~e  272 (311)
T KOG0277|consen  198 WSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG-HGLAVRKVKFSPHHASL----LASASYDMTVRIWDPERQDSAIE  272 (311)
T ss_pred             ccccCCcEEEecCCCceEEEEehhhccccceeecC-CceEEEEEecCcchhhH----hhhccccceEEecccccchhhhh
Confidence            998 66789999999999999999754 4556644 46679999999988764    6899999999999988544 455


Q ss_pred             eeeccCCCcEEEEEcC-CCCEEEEeeCCCcEEEEeC
Q 022184          239 HKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       239 ~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~  273 (301)
                      ....|..-+..+.||+ ++.++|+++.|+.++||+.
T Consensus       273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccceEEeccccccccCceeeecccccceeeecc
Confidence            6677888899999998 5789999999999999984

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-32  Score=196.45  Aligned_cols=267  Identities=16%  Similarity=0.183  Sum_probs=210.6

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (301)
                      ....|++-+.++.+   +.++...+      .|.+..+|.- .++..+       -++.||++.|.++..+-+.+++++|
T Consensus         8 GHERplTqiKyN~e---GDLlFsca------KD~~~~vw~s-~nGerl-------Gty~GHtGavW~~Did~~s~~liTG   70 (327)
T KOG0643|consen    8 GHERPLTQIKYNRE---GDLLFSCA------KDSTPTVWYS-LNGERL-------GTYDGHTGAVWCCDIDWDSKHLITG   70 (327)
T ss_pred             cCccccceEEecCC---CcEEEEec------CCCCceEEEe-cCCcee-------eeecCCCceEEEEEecCCcceeeec
Confidence            45689999999977   55666544      5666688843 344333       3578999999999999999999999


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-----CCeEEEEeCC-------Ccceecc
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWP-------SLRIILD  149 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~v~d~~-------~~~~~~~  149 (301)
                      +.|.++++||+++++.        +.......+|..+.|+++|++++...+     .+.|.++|++       ..++..+
T Consensus        71 SAD~t~kLWDv~tGk~--------la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k  142 (327)
T KOG0643|consen   71 SADQTAKLWDVETGKQ--------LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK  142 (327)
T ss_pred             cccceeEEEEcCCCcE--------EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence            9999999999999987        333345678999999999998887764     4789999997       3445667


Q ss_pred             cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (301)
Q Consensus       150 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (301)
                      +..+.+.++.+-|.|-++.|++|..||.|..||+++++....-...|...|+.+.++||..+     .++++.|.+-++|
T Consensus       143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~-----FiT~s~Dttakl~  217 (327)
T KOG0643|consen  143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY-----FITGSKDTTAKLV  217 (327)
T ss_pred             ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce-----EEecccCccceee
Confidence            77777899999999999999999999999999999987665554445557999999999998     7999999999999


Q ss_pred             EccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEE--EeCCCc------------eeeccccccccCccEEEEE
Q 022184          230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV--VDVKKM------------EINHWSKRLHLGTSIALVE  295 (301)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i--~~~~~~------------~~~~~~~~~~~~~~v~~~~  295 (301)
                      |.++.+.+..+.. ..++++.+++|....++.|+.....-+  =+.+.+            +.+..+ .+| =++|++++
T Consensus       218 D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGH-FGPINsvA  294 (327)
T KOG0643|consen  218 DVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGH-FGPINSVA  294 (327)
T ss_pred             eccceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-ccc-ccCcceeE
Confidence            9999888876654 678999999998777777654322222  222222            222233 678 89999999


Q ss_pred             EccCCC
Q 022184          296 FCPTQR  301 (301)
Q Consensus       296 ~spdg~  301 (301)
                      |+|||+
T Consensus       295 fhPdGk  300 (327)
T KOG0643|consen  295 FHPDGK  300 (327)
T ss_pred             ECCCCc
Confidence            999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=9.1e-33  Score=198.26  Aligned_cols=267  Identities=13%  Similarity=0.186  Sum_probs=223.2

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...||..++|+|-...+-+++.+..++..      .+-  +.++..+      .-++.+|.+.|.+...+.+..+.|+++
T Consensus        13 htrpvvdl~~s~itp~g~flisa~kd~~p------mlr--~g~tgdw------igtfeghkgavw~~~l~~na~~aasaa   78 (334)
T KOG0278|consen   13 HTRPVVDLAFSPITPDGYFLISASKDGKP------MLR--NGDTGDW------IGTFEGHKGAVWSATLNKNATRAASAA   78 (334)
T ss_pred             CCcceeEEeccCCCCCceEEEEeccCCCc------hhc--cCCCCCc------EEeeeccCcceeeeecCchhhhhhhhc
Confidence            35788999999765556666665533221      111  1223333      446899999999999999998999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc-eecccccCCccEEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMD  161 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~  161 (301)
                      .|=+-++||.-++..        +..+.|..-|..++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+-
T Consensus        79 adftakvw~a~tgde--------lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~  150 (334)
T KOG0278|consen   79 ADFTAKVWDAVTGDE--------LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVL  150 (334)
T ss_pred             ccchhhhhhhhhhhh--------hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEE
Confidence            999999999988765        6677788899999999999999999999999999997654 3456778889999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      |....+.|++++.|++||+||.+++..++++...+  +|+++..+++|++      ++-...+.|.+||..+...+..++
T Consensus       151 wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~i------lTia~gssV~Fwdaksf~~lKs~k  222 (334)
T KOG0278|consen  151 WCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRI------LTIAYGSSVKFWDAKSFGLLKSYK  222 (334)
T ss_pred             EeccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCE------EEEecCceeEEeccccccceeecc
Confidence            99988899999999999999999999999998654  5999999999995      555567789999999988876655


Q ss_pred             ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      . ...|.+.+++|+...+++|++|..++.||..+++.+.....+| -++|.++.|+|||.
T Consensus       223 ~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  223 M-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGE  280 (334)
T ss_pred             C-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCc
Confidence            3 4678899999999999999999999999999999888866788 99999999999984

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.8e-32  Score=219.72  Aligned_cols=212  Identities=20%  Similarity=0.287  Sum_probs=188.2

Q ss_pred             cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc-----ccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec
Q 022184           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-----DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (301)
                      ..++|.+.|.+++.+||++.+++++.|.+|++||..--..     ...+...+...+.-...|.|+++||||++|+++--
T Consensus       449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL  528 (888)
T KOG0306|consen  449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL  528 (888)
T ss_pred             hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec
Confidence            4578999999999999999999999999999999853221     11122222334445688999999999999999999


Q ss_pred             CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc
Q 022184          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (301)
Q Consensus       133 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (301)
                      |.+++||-+++.+-...+.+|.-||.|+..+||++.++||+.|.+|++|-+.-|.+-.++..|.+ .|.++.|.|.... 
T Consensus       529 dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD-Svm~V~F~P~~~~-  606 (888)
T KOG0306|consen  529 DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD-SVMSVQFLPKTHL-  606 (888)
T ss_pred             cCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC-ceeEEEEccccee-
Confidence            99999999999999889999999999999999999999999999999999999999999987765 5999999997665 


Q ss_pred             eEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       213 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                          +++++.|+.|+-||-.+.+.+..+.+|...|++++.+|+|.++++++.|.+|++|....
T Consensus       607 ----FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  607 ----FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ----EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence                68899999999999999999999999999999999999999999999999999999765

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.8e-30  Score=183.24  Aligned_cols=280  Identities=15%  Similarity=0.184  Sum_probs=217.5

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcc-----eeeeCC-ce-eccccccCCcceEEEECCC
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT-----SVYTSP-LV-TYVFDESEGDPMTIAVNPS   74 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~-~~-~~~~~~h~~~v~~~~~~~~   74 (301)
                      +....|.+++|+|.   +.+.|+|..      ..+++|..|..-..     +-..+| .. -...+.|.+.|.|.+|+|+
T Consensus        30 ~dsqairav~fhp~---g~lyavgsn------skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPA---GGLYAVGSN------SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             cchhheeeEEecCC---CceEEeccC------CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            45677999999988   668888773      34557776632111     111122 22 2345778999999999999


Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC----CCEEEEee-cCCeEEEEeCCCcceecc
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAAGG-VDGHLRIMHWPSLRIILD  149 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~-~dg~i~v~d~~~~~~~~~  149 (301)
                      |++|++++.|++|++..+......  .....+...-|.+.|+.++|-.+    +.+|++++ .|..|++-|..+++....
T Consensus       101 geliatgsndk~ik~l~fn~dt~~--~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCN--ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             cCeEEecCCCceEEEEeccccccc--ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence            999999999999999888655432  22233444458899999999653    45666654 477888889999999888


Q ss_pred             cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec------CCCCeeEEEEccCCCcceEEEEEEeCCc
Q 022184          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (301)
Q Consensus       150 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~  223 (301)
                      +.+|.+.|.++ ++=++-++++|+.|.+|++||++-..++..+...      ....|..++..|.|+.     ++++..|
T Consensus       179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl-----l~sg~~d  252 (350)
T KOG0641|consen  179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL-----LASGHAD  252 (350)
T ss_pred             ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce-----eeeccCC
Confidence            99999988776 3335889999999999999999998888877421      1246899999999997     7999999


Q ss_pred             ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc---eeeccccccccCccEEEEEEccC
Q 022184          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM---EINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      ....+||++.++.++.+..|...|+++.|||...|+++++.|.+|++-|++..   ++.......| ...+-.+.|+|.
T Consensus       253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~  330 (350)
T KOG0641|consen  253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQ  330 (350)
T ss_pred             CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec-cCceEEEEecCc
Confidence            99999999999999999999999999999999999999999999999999743   2222333567 777888899886

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=4.1e-32  Score=207.42  Aligned_cols=266  Identities=14%  Similarity=0.183  Sum_probs=218.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      .+.|..+.|.++   ...++.|+      .|..|++|...+....+      ..++.+..+.|+++.|.++++++++++.
T Consensus       175 ~gev~~v~~l~~---sdtlatgg------~Dr~Ik~W~v~~~k~~~------~~tLaGs~g~it~~d~d~~~~~~iAas~  239 (459)
T KOG0288|consen  175 EGEVHDVEFLRN---SDTLATGG------SDRIIKLWNVLGEKSEL------ISTLAGSLGNITSIDFDSDNKHVIAASN  239 (459)
T ss_pred             ccccceeEEccC---cchhhhcc------hhhhhhhhhcccchhhh------hhhhhccCCCcceeeecCCCceEEeecC
Confidence            467788888876   45777766      67777999988776433      3457788899999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      |+.+++|++...+....       ...|.+.|+++.|......+++|+.|.+|++||+....+...... ...+.+|+.+
T Consensus       240 d~~~r~Wnvd~~r~~~T-------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~  311 (459)
T KOG0288|consen  240 DKNLRLWNVDSLRLRHT-------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS  311 (459)
T ss_pred             CCceeeeeccchhhhhh-------hcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec
Confidence            99999999988776222       224889999999988776799999999999999998877665543 3456666665


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  243 (301)
                        ...++++..|++|++||.++..+......+  +.|+++..++++..     +.+.+.|..+.+.|+++.+....+...
T Consensus       312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g~~-----lLsssRDdtl~viDlRt~eI~~~~sA~  382 (459)
T KOG0288|consen  312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDGLE-----LLSSSRDDTLKVIDLRTKEIRQTFSAE  382 (459)
T ss_pred             --ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeeccCCeE-----EeeecCCCceeeeecccccEEEEeecc
Confidence              556889999999999999999998888755  36999999999998     677799999999999998877666543


Q ss_pred             C----CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          244 R----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       244 ~----~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .    ...+.+.|||++.|+++|+.||.|+||++.++++...+...+....|++++|+|.|+
T Consensus       383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~  444 (459)
T KOG0288|consen  383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS  444 (459)
T ss_pred             ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence            2    457889999999999999999999999999999888776555123699999999874

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.8e-31  Score=192.57  Aligned_cols=231  Identities=11%  Similarity=0.126  Sum_probs=196.5

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCC
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDG  134 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg  134 (301)
                      +..+++|...|.+++|+.+|..|++++.|+++.+|+++..+...     ......|.+.|-.++|+| ....+++++.|.
T Consensus        13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-----~~~~~gh~~svdql~w~~~~~d~~atas~dk   87 (313)
T KOG1407|consen   13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-----ELVYRGHTDSVDQLCWDPKHPDLFATASGDK   87 (313)
T ss_pred             hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-----hhcccCCCcchhhheeCCCCCcceEEecCCc
Confidence            35678999999999999999999999999999999998774322     233345778899999998 677899999999


Q ss_pred             eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      +|++||.+++++........+.+ -+.|+|+|++++.++.|..|...|.++.+.....+...  .+.-++|+.++..   
T Consensus        88 ~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~---  161 (313)
T KOG1407|consen   88 TIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDL---  161 (313)
T ss_pred             eEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc--eeeeeeecCCCCE---
Confidence            99999999999987776555555 57899999999999999999999999988877765433  4788899966664   


Q ss_pred             EEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEE
Q 022184          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV  294 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~  294 (301)
                        ++.....|.|.|......+++..++.|.....++.|+|+|+++|+|+.|..+.+||++..-+++.+ ..+ .-+|..+
T Consensus       162 --Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i-sRl-dwpVRTl  237 (313)
T KOG1407|consen  162 --FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI-SRL-DWPVRTL  237 (313)
T ss_pred             --EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee-ccc-cCceEEE
Confidence              233344689999999999999999999999999999999999999999999999999998888877 445 7899999


Q ss_pred             EEccCCC
Q 022184          295 EFCPTQR  301 (301)
Q Consensus       295 ~~spdg~  301 (301)
                      +||.|||
T Consensus       238 SFS~dg~  244 (313)
T KOG1407|consen  238 SFSHDGR  244 (313)
T ss_pred             EeccCcc
Confidence            9999996

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-31  Score=219.84  Aligned_cols=237  Identities=15%  Similarity=0.166  Sum_probs=187.1

Q ss_pred             ecccc-ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc-------------------------------------
Q 022184           56 TYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-------------------------------------   97 (301)
Q Consensus        56 ~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~-------------------------------------   97 (301)
                      .+.+. .|.+.|.++.|++||+|||+|+.|+.|+||.+...+.                                     
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            45566 8999999999999999999999999999999976111                                     


Q ss_pred             -------cc-c-------ccc-ccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           98 -------DI-N-------LLA-KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        98 -------~~-~-------~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                             .. .       +.. ......+|.+.|..+.||.++ +|++++.|.+|++|++...+++..+ .|.+.|+|++
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVA  416 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCeeEEEE
Confidence                   00 0       000 011223467889999999754 8999999999999999988886554 7889999999


Q ss_pred             ecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       162 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      |+| |.++|++|+-|+.++||++...+...-...+  ..|++++|.|||+.     ++.|+.+|.+++|+....+.....
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~-----avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKG-----AVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCce-----EEEEEeccEEEEEEccCCeEEEee
Confidence            999 8889999999999999999887766555433  46999999999998     788999999999999876654322


Q ss_pred             ec--c------CCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          241 RL--L------RKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       241 ~~--~------~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..  +      ...|+.+.|.|.. ..+++.+.|.+|+|||.++.+++..+...+....-....|+.||+
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk  559 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGK  559 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCC
Confidence            11  1      2379999999843 468888899999999999888888876444334456788888885

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-31  Score=212.15  Aligned_cols=243  Identities=16%  Similarity=0.182  Sum_probs=208.4

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccc-cCCcceEEEECCCCCeEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...|+++.|+++   +.++|+|.      .++.++||+......        ...+.+ |...|.+++|.  +..+.+|+
T Consensus       217 ~~~vtSv~ws~~---G~~LavG~------~~g~v~iwD~~~~k~--------~~~~~~~h~~rvg~laW~--~~~lssGs  277 (484)
T KOG0305|consen  217 EELVTSVKWSPD---GSHLAVGT------SDGTVQIWDVKEQKK--------TRTLRGSHASRVGSLAWN--SSVLSSGS  277 (484)
T ss_pred             CCceEEEEECCC---CCEEEEee------cCCeEEEEehhhccc--------cccccCCcCceeEEEecc--CceEEEec
Confidence            578999999988   78999988      566679988754432        233555 99999999997  67899999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.|..+|+...+.....      ...|...|..++|++|++++|+|+.|+.+.|||....++...+..|...|..++|
T Consensus       278 r~~~I~~~dvR~~~~~~~~------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~aw  351 (484)
T KOG0305|consen  278 RDGKILNHDVRISQHVVST------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAW  351 (484)
T ss_pred             CCCcEEEEEEecchhhhhh------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeee
Confidence            9999999999887653331      2347789999999999999999999999999999888888889999999999999


Q ss_pred             cC-CCcEEEEEe--CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184          163 SL-DSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (301)
Q Consensus       163 ~~-~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  239 (301)
                      +| ....||+|+  .|+.|++||..+++.+..+...  ..|..+.|++..+.+.   ...|..+..|.||+..+.+.+..
T Consensus       352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~---sthG~s~n~i~lw~~ps~~~~~~  426 (484)
T KOG0305|consen  352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG--SQVCSLIWSKKYKELL---STHGYSENQITLWKYPSMKLVAE  426 (484)
T ss_pred             CCCccCceEEcCCCcccEEEEEEcCCCcEecccccC--CceeeEEEcCCCCEEE---EecCCCCCcEEEEeccccceeee
Confidence            99 566888865  7999999999999998888643  4699999999998732   35566778999999999999999


Q ss_pred             eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      +.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus       427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999999999999999999999999764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=5.4e-31  Score=199.35  Aligned_cols=254  Identities=14%  Similarity=0.192  Sum_probs=202.0

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      .+++|..++|.........++.++      .|.++++|.++.....+..    ...-.||...|.++...++|..+++|+
T Consensus       143 ht~~ik~v~~v~~n~~~~~fvsas------~Dqtl~Lw~~~~~~~~~~~----~~~~~GHk~~V~sVsv~~sgtr~~SgS  212 (423)
T KOG0313|consen  143 HTGPIKSVAWVIKNSSSCLFVSAS------MDQTLRLWKWNVGENKVKA----LKVCRGHKRSVDSVSVDSSGTRFCSGS  212 (423)
T ss_pred             CCcceeeeEEEecCCccceEEEec------CCceEEEEEecCchhhhhH----HhHhcccccceeEEEecCCCCeEEeec
Confidence            468899899976544444566655      7778899999987654422    233459999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccc-----cc-------------cccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc
Q 022184           83 TNGGCKLFEVYGGATD-----IN-------------LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~-----~~-------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  144 (301)
                      .|..|.+|+.+.....     ..             .-.+......|..+|.++.|++ ...+++++.|.+|+.||+.++
T Consensus       213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence            9999999994322110     00             0000112235778999999988 678999999999999999999


Q ss_pred             ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--e-EEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV--A-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                      ..+..+. ....+.+++.+|..++|++|+.|..+++||.|++.  . ..++.+| ...|.++.|+|...+.    +++++
T Consensus       292 ~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~----~~S~S  365 (423)
T KOG0313|consen  292 GLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQ----LVSGS  365 (423)
T ss_pred             cceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc-hhhhhheecCCCCceE----EEEEe
Confidence            8876664 34689999999999999999999999999998753  2 3445544 5589999999998864    68999


Q ss_pred             CcceEEEEEccCce-EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          222 DKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       222 ~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      .|+++++||+++.+ ++..+..|...|.++.|. ++.+|++|+.|++|+|+.-.
T Consensus       366 ~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  366 YDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             cCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            99999999999887 888999999999999997 46699999999999999754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1e-30  Score=197.81  Aligned_cols=245  Identities=16%  Similarity=0.146  Sum_probs=203.1

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC---eEEEEecCCcEEEEEEcCCccccccccccCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD---DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL  109 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  109 (301)
                      .||.+++|+.....         ...+.+|.++|.+++|.-...   .|++++.|.++++|.++.++........   ..
T Consensus       123 YDg~~riWd~~Gk~---------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~---~~  190 (423)
T KOG0313|consen  123 YDGTSRIWDLKGKS---------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV---CR  190 (423)
T ss_pred             cCCeeEEEecCCce---------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH---hc
Confidence            78888999876544         455789999999999854333   5999999999999999888764443322   12


Q ss_pred             CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC-------------------------cceecccccCCccEEEEEecC
Q 022184          110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-------------------------LRIILDEPKAHKSVLDMDFSL  164 (301)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~-------------------------~~~~~~~~~~~~~i~~~~~~~  164 (301)
                      .|...|.+++..++|..+++|+.|.+|.+|+..+                         +.++..+.+|..+|.++.|++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            6889999999999999999999999999999311                         112345667889999999998


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce---Eeeeee
Q 022184          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKR  241 (301)
Q Consensus       165 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~  241 (301)
                       ...+++++.|.+|+.||+.++.....+...  ....++..+|..+.     +++++.|..+++||.+++.   ....+.
T Consensus       271 -~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~~~~L-----l~~gssdr~irl~DPR~~~gs~v~~s~~  342 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSPLSKL-----LASGSSDRHIRLWDPRTGDGSVVSQSLI  342 (423)
T ss_pred             -CCceEeecccceEEEEEeecccceeeeecC--cceeEeecccccce-----eeecCCCCceeecCCCCCCCceeEEeee
Confidence             778999999999999999999998888754  35899999998886     7999999999999998764   346788


Q ss_pred             ccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCce-eeccccccccCccEEEEEEccC
Q 022184          242 LLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      +|++.|.++.|+|.. ..|++++.|+++++||+++.+ ++..+ .+| ...|.++.|+.-
T Consensus       343 gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h-~DKvl~vdW~~~  400 (423)
T KOG0313|consen  343 GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGH-NDKVLSVDWNEG  400 (423)
T ss_pred             cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccC-CceEEEEeccCC
Confidence            999999999999954 678899999999999999887 66666 678 899999999754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-29  Score=188.02  Aligned_cols=265  Identities=12%  Similarity=0.112  Sum_probs=207.9

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      .+++|.++.|+++   +.++++..      .|..+++|+.....        ....+..++-.|..++|......++.++
T Consensus        13 ~~~~i~sl~fs~~---G~~litss------~dDsl~LYd~~~g~--------~~~ti~skkyG~~~~~Fth~~~~~i~sS   75 (311)
T KOG1446|consen   13 TNGKINSLDFSDD---GLLLITSS------EDDSLRLYDSLSGK--------QVKTINSKKYGVDLACFTHHSNTVIHSS   75 (311)
T ss_pred             CCCceeEEEecCC---CCEEEEec------CCCeEEEEEcCCCc--------eeeEeecccccccEEEEecCCceEEEcc
Confidence            4789999999988   55666533      66788998775332        1234555677788999987777777666


Q ss_pred             c--CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184           83 T--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (301)
Q Consensus        83 ~--d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  160 (301)
                      .  |.+|+..++.+++....       ...|...|..++.+|-+..+++++.|++|++||++..++...+.....+  .+
T Consensus        76 tk~d~tIryLsl~dNkylRY-------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~  146 (311)
T KOG1446|consen   76 TKEDDTIRYLSLHDNKYLRY-------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA  146 (311)
T ss_pred             CCCCCceEEEEeecCceEEE-------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence            6  88999999998886322       2347889999999998899999999999999999977765444333333  47


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCC--ceEEEEee--cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  236 (301)
                      +|.|+|-++|++.....|++||+|.-  .+...+..  ......+.+.|||||+.     ++.+...+.+++.|.-+|..
T Consensus       147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-----iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-----ILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-----EEEEeCCCcEEEEEccCCcE
Confidence            89999999999988889999999863  33333332  23345889999999998     56677888999999999998


Q ss_pred             eeeeeccCCC---cEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          237 IGHKRLLRKP---ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       237 ~~~~~~~~~~---v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      +..+..+...   .-..+|+||++++++|+.||+|.+|++++++....+...+ .+++.++.|+|.
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~-~~~~~~~~fnP~  286 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN-GGPVSCVRFNPR  286 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC-CCCccccccCCc
Confidence            8777766533   2567899999999999999999999999999988886556 889999999984

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.5e-30  Score=190.08  Aligned_cols=211  Identities=18%  Similarity=0.232  Sum_probs=182.0

Q ss_pred             eeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC--EEEEeec
Q 022184           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGV  132 (301)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~  132 (301)
                      ....+..|.+++++++.  +++++|+|+.|.+|+|||+......       ...+.|.+.|+++.|.+.-.  .|++|++
T Consensus        35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ql-------g~ll~HagsitaL~F~~~~S~shLlS~sd  105 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQL-------GILLSHAGSITALKFYPPLSKSHLLSGSD  105 (362)
T ss_pred             ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhh-------cceeccccceEEEEecCCcchhheeeecC
Confidence            35567899999999999  5899999999999999999887652       23345789999999999665  8999999


Q ss_pred             CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc
Q 022184          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (301)
Q Consensus       133 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (301)
                      ||.|.+|+....+.+..+..|.+.|+.++.+|.+++.++.+.|+.+++||+-.|+....+...+.  .+.+.|+|.|.+.
T Consensus       106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F  183 (362)
T KOG0294|consen  106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHF  183 (362)
T ss_pred             CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEE
Confidence            99999999999999999999999999999999999999999999999999998887666654443  4558888888863


Q ss_pred             eEEE----------------------------------EEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEE--cCCC
Q 022184          213 FLFC----------------------------------TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI--SLDG  256 (301)
Q Consensus       213 ~~~~----------------------------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--s~~~  256 (301)
                      ++..                                  +++|++++.|.+||.....+...+.+|...|-.+.+  .|++
T Consensus       184 ~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~  263 (362)
T KOG0294|consen  184 VVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH  263 (362)
T ss_pred             EEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence            3321                                  578899999999999998899999999999999885  5678


Q ss_pred             CEEEEeeCCCcEEEEeCCCc
Q 022184          257 KYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       257 ~~l~~~~~d~~i~i~~~~~~  276 (301)
                      .+|++++.||.|++||++..
T Consensus       264 ~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  264 EYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEEeccCceEEEEEcccc
Confidence            99999999999999999865

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.98  E-value=1.1e-30  Score=201.94  Aligned_cols=259  Identities=14%  Similarity=0.149  Sum_probs=198.1

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee--CCceeccccccCCcceEEEECCCCC-eEEE
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGD-DFVC   80 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~   80 (301)
                      .+.|+.+...|  .+..++|+++      ..+.+.||++.........  .......+.+|.+.-++++|++... .|++
T Consensus       124 ~gEVnRaRymP--Qnp~iVAt~t------~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls  195 (422)
T KOG0264|consen  124 DGEVNRARYMP--QNPNIVATKT------SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS  195 (422)
T ss_pred             CccchhhhhCC--CCCcEEEecC------CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence            34566666663  3466777655      5566789988765543322  2234457899999899999999554 8889


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCC--CcceecccccCCccE
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSV  157 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~i  157 (301)
                      ++.|++|.+||+..................|...|..++|++ +..+|++++.|+.+.|||++  +.+......+|.+++
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV  275 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence            999999999999876553222222233445788999999999 66788999999999999999  455556677888999


Q ss_pred             EEEEecC-CCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184          158 LDMDFSL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       158 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  235 (301)
                      .+++|+| ++..||+++.|++|++||+|+.+ ++..+..|. ..|..+.|+|....+    +++++.|+.+.+||+..-.
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~-dev~~V~WSPh~etv----LASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE-DEVFQVEWSPHNETV----LASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC-cceEEEEeCCCCCce----eEecccCCcEEEEeccccc
Confidence            9999999 56689999999999999999754 456666554 469999999998863    7889999999999986421


Q ss_pred             --------------EeeeeeccCCCcEEEEEcCCCC-EEEEeeCCCcEEEEeCCC
Q 022184          236 --------------KIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       236 --------------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~~~~~  275 (301)
                                    .+....+|...|..+.|+|+.. .|++.+.|+.+.||++..
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                          2344567788999999999875 567778999999999863

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.7e-30  Score=185.05  Aligned_cols=212  Identities=18%  Similarity=0.209  Sum_probs=184.4

Q ss_pred             ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeE
Q 022184           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (301)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (301)
                      ..+..|+++|.++.|+-+|+|.++++.|.+|++|+...+....       ....|...|..++.+.|...|++|+.|..+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-------tYsghG~EVlD~~~s~Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-------TYSGHGHEVLDAALSSDNSKFASCGGDKAV   83 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-------eecCCCceeeeccccccccccccCCCCceE
Confidence            4578899999999999999999999999999999998877622       223466789999999999999999999999


Q ss_pred             EEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       137 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      .+||+++|+..+++.+|...|..+.|+.+...+++|+.|.++++||.++.  ++++.+....+ .|.++..+..  .   
T Consensus        84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~~h--e---  157 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVAEH--E---  157 (307)
T ss_pred             EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-ceeEEEeccc--E---
Confidence            99999999999999999999999999999999999999999999999864  56666654444 4888877644  2   


Q ss_pred             EEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~  286 (301)
                        +++++.||+++.||++.++.....  ...+|++++|++|++..++++.|+++++.|-.+|+++... .+|
T Consensus       158 --IvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY-kGh  224 (307)
T KOG0316|consen  158 --IVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY-KGH  224 (307)
T ss_pred             --EEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh-ccc
Confidence              689999999999999999875433  4678999999999999999999999999999999998876 455

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.98  E-value=9.9e-31  Score=205.31  Aligned_cols=240  Identities=17%  Similarity=0.253  Sum_probs=184.2

Q ss_pred             eeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      .+..+.+|+..|.++++.|.|.+|++|+.|.+|++||+.......+......+  .....|+++.|++.|..|++.+...
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEecCc
Confidence            46678999999999999999999999999999999999877654433222111  1335789999999999999998889


Q ss_pred             eEEEEeCCCccee------------cccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCce-EEEEee----cC
Q 022184          135 HLRIMHWPSLRII------------LDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVA-WTFLTR----NS  196 (301)
Q Consensus       135 ~i~v~d~~~~~~~------------~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~----~~  196 (301)
                      ..+|+|-...+..            ....+|...+++.+|+|+.+ .|++++.||++++||+...+. +..++.    ..
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            9999996543322            22345667899999999665 799999999999999976443 333332    22


Q ss_pred             CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE---eeeeeccCC--CcEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVV  271 (301)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~i~  271 (301)
                      .-+++.++|+|+|+.     ++++..||.|.+|+..+...   ......|..  .|+++.||+||++|++-+.|+++++|
T Consensus       317 Rv~~tsC~~nrdg~~-----iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW  391 (641)
T KOG0772|consen  317 RVPVTSCAWNRDGKL-----IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW  391 (641)
T ss_pred             ccCceeeecCCCcch-----hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence            336899999999998     79999999999999865433   223345654  89999999999999999999999999


Q ss_pred             eCCCcee-eccccccccCccEEEEEEccCCC
Q 022184          272 DVKKMEI-NHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       272 ~~~~~~~-~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |++..+. +..........+-+.++||||.+
T Consensus       392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k  422 (641)
T KOG0772|consen  392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK  422 (641)
T ss_pred             eccccccchhhhcCCCccCCCCccccCCCce
Confidence            9997653 33221111145678899999864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.9e-30  Score=213.25  Aligned_cols=242  Identities=12%  Similarity=0.175  Sum_probs=200.4

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (301)
                      |..+||..++|+|.   ..+++.||      .|-+|++|.|+...        +..++.||-+.|..+.|++.-.+++++
T Consensus        49 eHdGpVRgv~FH~~---qplFVSGG------DDykIkVWnYk~rr--------clftL~GHlDYVRt~~FHheyPWIlSA  111 (1202)
T KOG0292|consen   49 EHDGPVRGVDFHPT---QPLFVSGG------DDYKIKVWNYKTRR--------CLFTLLGHLDYVRTVFFHHEYPWILSA  111 (1202)
T ss_pred             ccCCccceeeecCC---CCeEEecC------CccEEEEEecccce--------ehhhhccccceeEEeeccCCCceEEEc
Confidence            56799999999988   56888777      77888999997543        356789999999999999999999999


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce---------------
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---------------  146 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~---------------  146 (301)
                      |.|.+|+||+.++..+...+.       .|...|.|..|+|....+++++-|.+|+|||+..-+.               
T Consensus       112 SDDQTIrIWNwqsr~~iavlt-------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~  184 (1202)
T KOG0292|consen  112 SDDQTIRIWNWQSRKCIAVLT-------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ  184 (1202)
T ss_pred             cCCCeEEEEeccCCceEEEEe-------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence            999999999999988743332       4778999999999989999999999999999842110               


Q ss_pred             --------------ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE--EEEeecCCCCeeEEEEccCCC
Q 022184          147 --------------ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGT  210 (301)
Q Consensus       147 --------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~  210 (301)
                                    ...+.+|...|.-++|+|.-..|++|++|..|++|.+..-+.-  .+..+| .+.|.++-|+|...
T Consensus       185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH-~nnVssvlfhp~q~  263 (1202)
T KOG0292|consen  185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH-YNNVSSVLFHPHQD  263 (1202)
T ss_pred             ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcc-cCCcceEEecCccc
Confidence                          1234567778999999999999999999999999998755432  334444 44699999999988


Q ss_pred             cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      .     +++.++|++|++||+...+.+..++..++..+.++-+|..+++++|- |+-+.+|.++
T Consensus       264 l-----IlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkle  321 (1202)
T KOG0292|consen  264 L-----ILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLE  321 (1202)
T ss_pred             e-----eEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence            7     79999999999999999999999988888999999999998877774 4445555554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1e-29  Score=191.57  Aligned_cols=241  Identities=15%  Similarity=0.143  Sum_probs=193.8

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (301)
                      +.+..|+|+.|+.+   +.++|+|+      .++.++||..+......        .+...-+.+.-+.|+|-+..|++|
T Consensus       104 gHKDSVt~~~Fshd---gtlLATGd------msG~v~v~~~stg~~~~--------~~~~e~~dieWl~WHp~a~illAG  166 (399)
T KOG0296|consen  104 GHKDSVTCCSFSHD---GTLLATGD------MSGKVLVFKVSTGGEQW--------KLDQEVEDIEWLKWHPRAHILLAG  166 (399)
T ss_pred             CCCCceEEEEEccC---ceEEEecC------CCccEEEEEcccCceEE--------EeecccCceEEEEecccccEEEee
Confidence            34678999999998   78999988      67778999887665443        233446678889999999999999


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc---------
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK---------  152 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---------  152 (301)
                      +.||.+..|.+.+....       .....|..++++-.|.|+|+.++++..||+|++||+.+++++.++..         
T Consensus       167 ~~DGsvWmw~ip~~~~~-------kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~  239 (399)
T KOG0296|consen  167 STDGSVWMWQIPSQALC-------KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCI  239 (399)
T ss_pred             cCCCcEEEEECCCccee-------eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcc
Confidence            99999999999885331       11223778999999999999999999999999999998876543320         


Q ss_pred             ------------------------------------------CCccEEEEE---ecCCCcEEEEEeCCCcEEEEeCCCCc
Q 022184          153 ------------------------------------------AHKSVLDMD---FSLDSEFLATTSTDGSARIWKTEDGV  187 (301)
Q Consensus       153 ------------------------------------------~~~~i~~~~---~~~~~~~l~~~~~d~~i~i~d~~~~~  187 (301)
                                                                +...+.++.   |+..=.+.|+|+.||+|.|||+...+
T Consensus       240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~  319 (399)
T KOG0296|consen  240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST  319 (399)
T ss_pred             ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence                                                      001122222   33333467788999999999998877


Q ss_pred             eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCc
Q 022184          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD  267 (301)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  267 (301)
                      ......  +...|..+.|-+ ..+     +++++.+|.|+.||.++++.+..+.+|...|.+++++|+++++++++.|+.
T Consensus       320 ~R~~c~--he~~V~~l~w~~-t~~-----l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  320 LRHICE--HEDGVTKLKWLN-TDY-----LLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             hheecc--CCCceEEEEEcC-cch-----heeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence            766665  445699999999 555     688999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCC
Q 022184          268 ICVVDVK  274 (301)
Q Consensus       268 i~i~~~~  274 (301)
                      .+||++.
T Consensus       392 a~VF~v~  398 (399)
T KOG0296|consen  392 ALVFEVP  398 (399)
T ss_pred             EEEEecC
Confidence            9999875

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=3.8e-30  Score=202.07  Aligned_cols=275  Identities=18%  Similarity=0.217  Sum_probs=202.9

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (301)
                      -|.++++-|.   +.-++.|+      .|..+++|+|.........   ...........|.++.|++.|..|++.+...
T Consensus       169 ~Vsal~~Dp~---GaR~~sGs------~Dy~v~~wDf~gMdas~~~---fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  169 IVSALAVDPS---GARFVSGS------LDYTVKFWDFQGMDASMRS---FRQLQPCETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             EEEEeeecCC---Cceeeecc------ccceEEEEecccccccchh---hhccCcccccccceeeecCCCCeEEEEecCc
Confidence            4566677655   44455554      8999999999877654432   2222334456799999999999999888888


Q ss_pred             cEEEEEEcCCcccccc-----ccccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCeEEEEeCCCcceecccccC------
Q 022184           86 GCKLFEVYGGATDINL-----LAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKA------  153 (301)
Q Consensus        86 ~i~~w~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------  153 (301)
                      ..+|+|.+..+.....     +........|...++|.+|+|+ ...+++++.||++++||++..+....+..+      
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            8999998765542211     1112334567789999999994 567899999999999999765543332221      


Q ss_pred             CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce--EEEEeecCC--CCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (301)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (301)
                      .-+++.++|+||++.||+|..||.|.+|+.+....  ...+...|.  ..|+++.||++|++     +++.+.|.++++|
T Consensus       317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-----LlSRg~D~tLKvW  391 (641)
T KOG0772|consen  317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-----LLSRGFDDTLKVW  391 (641)
T ss_pred             ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-----hhhccCCCceeee
Confidence            12789999999999999999999999999865432  222322222  26999999999998     7999999999999


Q ss_pred             EccCceE-eeeeecc--CCCcEEEEEcCCCCEEEEeeC------CCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          230 DISTWNK-IGHKRLL--RKPASVLSISLDGKYLAMGSK------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       230 d~~~~~~-~~~~~~~--~~~v~~~~~s~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      |+++.+. +....+.  ..+-+.++|||+.++|++|+.      .|.+.+||..+.+.++.+. .. ...|..+.|+|-
T Consensus       392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~-i~-~aSvv~~~Whpk  468 (641)
T KOG0772|consen  392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID-IS-TASVVRCLWHPK  468 (641)
T ss_pred             eccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec-CC-CceEEEEeecch
Confidence            9998654 3222222  235577899999999999863      4789999999999888773 33 678999999983

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.7e-29  Score=185.97  Aligned_cols=266  Identities=12%  Similarity=0.104  Sum_probs=207.9

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|.+++|+|.  ...+++.|.      -|+++++|++...+...   +   .....|.++|.+++|+.+|..+++++.
T Consensus        27 ~DsIS~l~FSP~--~~~~~~A~S------WD~tVR~wevq~~g~~~---~---ka~~~~~~PvL~v~WsddgskVf~g~~   92 (347)
T KOG0647|consen   27 EDSISALAFSPQ--ADNLLAAGS------WDGTVRIWEVQNSGQLV---P---KAQQSHDGPVLDVCWSDDGSKVFSGGC   92 (347)
T ss_pred             ccchheeEeccc--cCceEEecc------cCCceEEEEEecCCccc---c---hhhhccCCCeEEEEEccCCceEEeecc
Confidence            456889999973  245665544      89999999998753221   1   345678999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC--EEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      |+.+++||+.+++.        ...-.|.++|..+.|-+...  .|++|+.|.+|+.||.++..++..+. -.+.++++.
T Consensus        93 Dk~~k~wDL~S~Q~--------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D  163 (347)
T KOG0647|consen   93 DKQAKLWDLASGQV--------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD  163 (347)
T ss_pred             CCceEEEEccCCCe--------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence            99999999999865        33445889999999988655  79999999999999999888876653 345666665


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceE-EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc--eEee
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NKIG  238 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~  238 (301)
                      .-  ..+++.+..++.|.+|+++.+... .....+....+++++..++...     .+.|+-+|.+.+..+..+  +.-.
T Consensus       164 v~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-----~alGsiEGrv~iq~id~~~~~~nF  236 (347)
T KOG0647|consen  164 VL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-----FALGSIEGRVAIQYIDDPNPKDNF  236 (347)
T ss_pred             cc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-----eEeeeecceEEEEecCCCCccCce
Confidence            43  457888889999999999765432 2233334456899999998887     477888999999988765  3333


Q ss_pred             eeeccCC---------CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          239 HKRLLRK---------PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       239 ~~~~~~~---------~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .++.|+.         .|++++|+|.-..|++++.||++.+||-+....+... ..| ..+|++.+|+.+|.
T Consensus       237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s-~~~-~qpItcc~fn~~G~  306 (347)
T KOG0647|consen  237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS-ETH-PQPITCCSFNRNGS  306 (347)
T ss_pred             eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc-CcC-CCccceeEecCCCC
Confidence            4555542         4778999999889999999999999999887777665 456 89999999999984

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.2e-30  Score=206.86  Aligned_cols=228  Identities=13%  Similarity=0.157  Sum_probs=201.7

Q ss_pred             cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEE
Q 022184           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (301)
                      .+..+.++|.++.++|....++++-.+|.+.||+.++......+.       -...+|++..|-+-.+++++|++|..|+
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe-------V~~~PvRa~kfiaRknWiv~GsDD~~Ir   80 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE-------VSEVPVRAAKFIARKNWIVTGSDDMQIR   80 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee-------ecccchhhheeeeccceEEEecCCceEE
Confidence            455689999999999999999999999999999998876522221       1346889999999999999999999999


Q ss_pred             EEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEE
Q 022184          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (301)
                      ||+.++++.+..+..|.+.|.+++.+|.-.+++++++|-.|++||.+.+- +.+++.+| ...|.+++|.|.....    
T Consensus        81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~fnPkD~nt----  155 (794)
T KOG0276|consen   81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVAFNPKDPNT----  155 (794)
T ss_pred             EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEEecCCCccc----
Confidence            99999999999999999999999999999999999999999999998764 44555554 5569999999987763    


Q ss_pred             EEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcC--CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEE
Q 022184          217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV  294 (301)
Q Consensus       217 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~  294 (301)
                      .++++-|++|++|.+.+..+..++.+|...|+++.+-+  |..+|++|+.|..|+|||.++..+++++ .+| ...|+.+
T Consensus       156 FaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-eGH-t~Nvs~v  233 (794)
T KOG0276|consen  156 FASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-EGH-TNNVSFV  233 (794)
T ss_pred             eeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-hcc-cccceEE
Confidence            58899999999999999999999999999999999987  4579999999999999999999999988 689 9999999


Q ss_pred             EEccC
Q 022184          295 EFCPT  299 (301)
Q Consensus       295 ~~spd  299 (301)
                      .|+|.
T Consensus       234 ~fhp~  238 (794)
T KOG0276|consen  234 FFHPE  238 (794)
T ss_pred             EecCC
Confidence            99984

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.3e-29  Score=201.80  Aligned_cols=225  Identities=15%  Similarity=0.158  Sum_probs=191.5

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      .+.|+++.|+++|.+|++|..+|.|.|||....+....+.      ..|...|.+++|+  +..+.+|+.++.|..+|++
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~------~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR------GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc------CCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence            7899999999999999999999999999998776532221      1267899999997  6789999999999999999


Q ss_pred             Ccceecc-cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184          143 SLRIILD-EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       143 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                      ..+.... +..|...|..+.|++|++++|+|+.|+.+.|||....+++..+..|. ..|..++|+|-...++  +...|+
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~-aAVKA~awcP~q~~lL--AsGGGs  365 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT-AAVKALAWCPWQSGLL--ATGGGS  365 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccc-eeeeEeeeCCCccCce--EEcCCC
Confidence            8876665 66788899999999999999999999999999998888888887664 5699999999887632  234456


Q ss_pred             CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEe--eCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG--SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      .|++|++||..+++.+..+.. ...|..+.|++..+-|+++  ..++.|.||+..+.+.+..+ .+| ...|..++++||
T Consensus       366 ~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-~gH-~~RVl~la~SPd  442 (484)
T KOG0305|consen  366 ADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-LGH-TSRVLYLALSPD  442 (484)
T ss_pred             cccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-cCC-cceeEEEEECCC
Confidence            799999999999998866543 5789999999998766665  45678999999998888877 789 999999999999


Q ss_pred             CC
Q 022184          300 QR  301 (301)
Q Consensus       300 g~  301 (301)
                      |+
T Consensus       443 g~  444 (484)
T KOG0305|consen  443 GE  444 (484)
T ss_pred             CC
Confidence            84

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=7.7e-31  Score=195.41  Aligned_cols=233  Identities=15%  Similarity=0.215  Sum_probs=193.8

Q ss_pred             ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccC-CCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  139 (301)
                      +....+.|..|+|||++|++++.||.|.+|+..+++....+..... ..+-+..+|.|+.||.|..++++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            3456689999999999999999999999999999887554433222 234467899999999999999999999999999


Q ss_pred             eCCCcceecccc-cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184          140 HWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       140 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      .+.+|.+++.+. .|...|+++.|+.|+..+++++.|.++++.-+++|+++..+.+|.. .|+...|.++|.+     ++
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~-----ii  364 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHH-----II  364 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCe-----EE
Confidence            999999999887 6778999999999999999999999999999999999999998765 5999999999998     79


Q ss_pred             EeCCcceEEEEEccCceEeeeeeccC--CCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeccccccc-cCccEEEE
Q 022184          219 QRGDKALLAVYDISTWNKIGHKRLLR--KPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLH-LGTSIALV  294 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~~~~v~~~  294 (301)
                      +++.||+|++|+.++.+++..++...  .+|.++-.-| +...++++...++|+|.++. |+.++.+..+. ..+..-+.
T Consensus       365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~  443 (508)
T KOG0275|consen  365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA  443 (508)
T ss_pred             EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence            99999999999999999987776543  5677877777 45789999999999999985 44444443322 13444555


Q ss_pred             EEccCC
Q 022184          295 EFCPTQ  300 (301)
Q Consensus       295 ~~spdg  300 (301)
                      ..||.|
T Consensus       444 ~lSpkG  449 (508)
T KOG0275|consen  444 ILSPKG  449 (508)
T ss_pred             EecCCC
Confidence            667665

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=3.7e-29  Score=181.33  Aligned_cols=226  Identities=15%  Similarity=0.220  Sum_probs=196.2

Q ss_pred             ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeE
Q 022184           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (301)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (301)
                      ..++||+.+++.+.++.+|.+|.+++.|.+..+|--.+++..       -....|.+.|.|+..+.+.+.+++|+.|.++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl-------Gty~GHtGavW~~Did~~s~~liTGSAD~t~   76 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL-------GTYDGHTGAVWCCDIDWDSKHLITGSADQTA   76 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee-------eeecCCCceEEEEEecCCcceeeecccccee
Confidence            347899999999999999999999999999999998777752       2334588999999999999999999999999


Q ss_pred             EEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC-----CcEEEEeCC-------CCceEEEEeecCCCCeeEEE
Q 022184          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTE-------DGVAWTFLTRNSDEKIELCR  204 (301)
Q Consensus       137 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~-------~~~~~~~~~~~~~~~v~~~~  204 (301)
                      ++||+++|+.+..+. ...+|..+.|+++|++++.+.++     +.|.++|++       ..++...+..+. ..++.+-
T Consensus        77 kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~  154 (327)
T KOG0643|consen   77 KLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSAL  154 (327)
T ss_pred             EEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeee
Confidence            999999999987764 45689999999999988877643     569999998       445566666554 4699999


Q ss_pred             EccCCCcceEEEEEEeCCcceEEEEEccCceE-eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      |.|-++.     ++++.++|.|..||.++++. +.....|...|+.++++||..++++++.|.+-++||..+.+.+..+.
T Consensus       155 Wg~l~~~-----ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  155 WGPLGET-----IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             ecccCCE-----EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            9999998     89999999999999999754 55667888999999999999999999999999999999999998875


Q ss_pred             ccccCccEEEEEEccC
Q 022184          284 RLHLGTSIALVEFCPT  299 (301)
Q Consensus       284 ~~~~~~~v~~~~~spd  299 (301)
                      .   ..||++.+++|-
T Consensus       230 t---e~PvN~aaisP~  242 (327)
T KOG0643|consen  230 T---ERPVNTAAISPL  242 (327)
T ss_pred             e---cccccceecccc
Confidence            4   579999999983

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=8e-29  Score=191.92  Aligned_cols=274  Identities=14%  Similarity=0.147  Sum_probs=209.4

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcce--eee---------CCceeccccccCCcceEEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS--VYT---------SPLVTYVFDESEGDPMTIAV   71 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~---------~~~~~~~~~~h~~~v~~~~~   71 (301)
                      ...+|+||+.+|+   ..++..++      .+++|.-|........  ...         .+..... .+|...+.+++.
T Consensus       141 H~~s~~~vals~d---~~~~fsas------k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~av  210 (479)
T KOG0299|consen  141 HQLSVTSVALSPD---DKRVFSAS------KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAV  210 (479)
T ss_pred             ccCcceEEEeecc---ccceeecC------CCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEE
Confidence            3568999999988   44555544      4445555544332211  111         1111111 489999999999


Q ss_pred             CCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc
Q 022184           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (301)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  151 (301)
                      ++||++|++|+.|..|.||+.++.+...       ....|.+.|.+++|-.....+++++.|..+++|+++....+.++.
T Consensus       211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~-------~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly  283 (479)
T KOG0299|consen  211 SSDGKYLATGGRDRHVQIWDCDTLEHVK-------VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY  283 (479)
T ss_pred             cCCCcEEEecCCCceEEEecCcccchhh-------cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence            9999999999999999999999887522       234578999999998888889999999999999999988888999


Q ss_pred             cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (301)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  231 (301)
                      +|++.|.++....-++.+-+|+.|+++++|++.... ...+.. +...+.|++|-.+..      +++|+.+|.|.+|++
T Consensus       284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg-~~~sidcv~~In~~H------fvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRG-GEGSIDCVAFINDEH------FVSGSDNGSIALWSL  355 (479)
T ss_pred             CCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeC-CCCCeeeEEEecccc------eeeccCCceEEEeee
Confidence            999999999988777777778899999999994433 233333 355699999998877      599999999999999


Q ss_pred             cCceEeeeeec-c-----------CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc-eeeccccccccCccEEEEEEcc
Q 022184          232 STWNKIGHKRL-L-----------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKM-EINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       232 ~~~~~~~~~~~-~-----------~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      .+.+++..... |           +..|++++..|...++++|+.+|.|++|.+..+ ..+..+......+.|++++|++
T Consensus       356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~  435 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSN  435 (479)
T ss_pred             cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEcc
Confidence            98877644321 1           126889999999999999999999999999887 2222222222378899999999


Q ss_pred             CCC
Q 022184          299 TQR  301 (301)
Q Consensus       299 dg~  301 (301)
                      +|+
T Consensus       436 sgk  438 (479)
T KOG0299|consen  436 SGK  438 (479)
T ss_pred             CCC
Confidence            986

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=8.1e-29  Score=202.58  Aligned_cols=274  Identities=15%  Similarity=0.156  Sum_probs=224.2

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcce-eeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (301)
                      ...++.+++|.|.+...+.+++       -..|.+..|.++..... ..........+.+|...|.+++++.+...++++
T Consensus       319 ~~~kiks~dv~~~~~~~~~lv~-------l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg  391 (888)
T KOG0306|consen  319 TSAKIKSFDVTPSGGTENTLVL-------LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG  391 (888)
T ss_pred             chhheeEEEEEecCCcceeEEE-------eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec
Confidence            4567889999988765544444       26688888888773322 111223345678999999999999988777776


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                       ..+.+++|+..+.++...+.         .+.+.+..|-|.++++++|...|.+.+||+.+...+.....|.+.|++++
T Consensus       392 -a~~SikiWn~~t~kciRTi~---------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~  461 (888)
T KOG0306|consen  392 -AGESIKIWNRDTLKCIRTIT---------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS  461 (888)
T ss_pred             -CCCcEEEEEccCcceeEEec---------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence             45669999999887743322         24788999999999999999999999999999988888889999999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCC-----CceEEEEee------cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          162 FSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTR------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                      .+||++.+++++.|.+|++||..-     +.....+..      .-...|.++.+||||++     ++.+=-|+++++|-
T Consensus       462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~-----LaVsLLdnTVkVyf  536 (888)
T KOG0306|consen  462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL-----LAVSLLDNTVKVYF  536 (888)
T ss_pred             ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE-----EEEEeccCeEEEEE
Confidence            999999999999999999999742     211111111      12345999999999998     67777899999999


Q ss_pred             ccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      +.+.+..-.+-+|.-||.++..|||++++++|+.|.+|+||-++=|.+-+.+ -+| ...|.++.|-|+.
T Consensus       537 lDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAH-dDSvm~V~F~P~~  604 (888)
T KOG0306|consen  537 LDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAH-DDSVMSVQFLPKT  604 (888)
T ss_pred             ecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcc-cCceeEEEEcccc
Confidence            9999988889999999999999999999999999999999999999998888 578 8999999999963

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3e-29  Score=195.60  Aligned_cols=240  Identities=13%  Similarity=0.214  Sum_probs=193.4

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEEec
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTT   83 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~   83 (301)
                      ..|+++.|..|   +.++|.|+      ..|.++++++.+.        .....+.+|+.+|..+.|+|+++ .|++|+.
T Consensus        69 ~~v~s~~fR~D---G~LlaaGD------~sG~V~vfD~k~r--------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD  131 (487)
T KOG0310|consen   69 DVVYSVDFRSD---GRLLAAGD------ESGHVKVFDMKSR--------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSD  131 (487)
T ss_pred             cceeEEEeecC---CeEEEccC------CcCcEEEeccccH--------HHHHHHhhccCceeEEEecccCCeEEEecCC
Confidence            45889999988   78999988      5566688874431        12456889999999999999554 6778888


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      |+.+++||+.+...       ......|+..|+|.+|+| ++.++++|+.||.|++||.+..........|..+|..+.+
T Consensus       132 d~v~k~~d~s~a~v-------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~  204 (487)
T KOG0310|consen  132 DKVVKYWDLSTAYV-------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLA  204 (487)
T ss_pred             CceEEEEEcCCcEE-------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEE
Confidence            89999999988763       123345889999999999 5668999999999999999887433333467789999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      -|.|..|++++. ..|++||+-+|.........|...|+|+.+..++..     +++++-|+.+++||+.+.+.+.... 
T Consensus       205 lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r-----LlS~sLD~~VKVfd~t~~Kvv~s~~-  277 (487)
T KOG0310|consen  205 LPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR-----LLSGSLDRHVKVFDTTNYKVVHSWK-  277 (487)
T ss_pred             cCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCce-----EeecccccceEEEEccceEEEEeee-
Confidence            999999999874 789999999665544443323346999999999987     8999999999999988888776554 


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      ..++|.+++.+|+++.++.|-.||.+.+-+...
T Consensus       278 ~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  278 YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence            478999999999999999999999888875443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2.2e-30  Score=194.41  Aligned_cols=240  Identities=13%  Similarity=0.201  Sum_probs=196.7

Q ss_pred             CCCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEE
Q 022184            1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (301)
Q Consensus         1 ~~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~   80 (301)
                      +...+.|.|+.|...     +++.|.      +|.++++|+++...        ...++-+|.+.|..+.|+  ..++++
T Consensus       234 ~GHtGSVLCLqyd~r-----viisGS------SDsTvrvWDv~tge--------~l~tlihHceaVLhlrf~--ng~mvt  292 (499)
T KOG0281|consen  234 TGHTGSVLCLQYDER-----VIVSGS------SDSTVRVWDVNTGE--------PLNTLIHHCEAVLHLRFS--NGYMVT  292 (499)
T ss_pred             hcCCCcEEeeeccce-----EEEecC------CCceEEEEeccCCc--------hhhHHhhhcceeEEEEEe--CCEEEE
Confidence            356789999999833     777766      78889999997543        234578999999999996  458999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  160 (301)
                      ++.|.++.+||+...... ...   .-...|...|+.+.|+  .++|++++.|.+|++|++.+++.++.+.+|...|.|+
T Consensus       293 cSkDrsiaVWdm~sps~i-t~r---rVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl  366 (499)
T KOG0281|consen  293 CSKDRSIAVWDMASPTDI-TLR---RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL  366 (499)
T ss_pred             ecCCceeEEEeccCchHH-HHH---HHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceeh
Confidence            999999999999876521 111   1123477889999995  5699999999999999999999999999999999988


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE----
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----  236 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----  236 (301)
                      .+.  ++++++|+.|.+|++||+..|.++..+.+|.+ -|.++.|...  .     +++|+.||+|++||+..+..    
T Consensus       367 QYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-LvRciRFd~k--r-----IVSGaYDGkikvWdl~aaldpra~  436 (499)
T KOG0281|consen  367 QYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFDNK--R-----IVSGAYDGKIKVWDLQAALDPRAP  436 (499)
T ss_pred             hcc--CeEEEecCCCceEEEEeccccHHHHHHhchHH-hhhheeecCc--e-----eeeccccceEEEEecccccCCccc
Confidence            875  89999999999999999999999999988755 6999999643  3     79999999999999987543    


Q ss_pred             -----eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184          237 -----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       237 -----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                           +..+..|.+.|..+.|  |...+++++.|.+|.|||..++...
T Consensus       437 ~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  437 ASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence                 2344556778888888  5668999999999999999876544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=8.5e-29  Score=190.57  Aligned_cols=261  Identities=14%  Similarity=0.175  Sum_probs=207.1

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      ++++.-++.   .+.+.+|+      .|..+.+++...+.  .      ...+.||...|+.+.++|+...+++++.|..
T Consensus       222 i~ald~~~s---~~~ilTGG------~d~~av~~d~~s~q--~------l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~  284 (506)
T KOG0289|consen  222 ITALDIIPS---SSKILTGG------EDKTAVLFDKPSNQ--I------LATLKGHTKKITSVKFHKDLDTVITASADEI  284 (506)
T ss_pred             eeEEeecCC---CCcceecC------CCCceEEEecchhh--h------hhhccCcceEEEEEEeccchhheeecCCcce
Confidence            444444433   35666666      44444666654433  1      4568999999999999999999999999999


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC--CccEEEEEecC
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSVLDMDFSL  164 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~i~~~~~~~  164 (301)
                      |++|.......       ......|..+|+.+..+|.|.||++++.|+...+.|++++..+......  .-.+++.+|+|
T Consensus       285 i~vws~~~~s~-------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  285 IRVWSVPLSSE-------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             EEeeccccccC-------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence            99999876653       2334458899999999999999999999999999999999887665432  23689999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC
Q 022184          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (301)
Q Consensus       165 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  244 (301)
                      ||.+|.+|..|+.+++||+.++.....+.+ |.++|..++|+.+|-+     ++++.+|+.|++||++..+....+...+
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~-----Lat~add~~V~lwDLRKl~n~kt~~l~~  431 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYW-----LATAADDGSVKLWDLRKLKNFKTIQLDE  431 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCccccccCCC-CCCceeEEEeccCceE-----EEEEecCCeEEEEEehhhcccceeeccc
Confidence            999999999999999999999998888887 4568999999999987     7899999999999999887666655433


Q ss_pred             -CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC--ceeeccccccccCccEEEEEEccC
Q 022184          245 -KPASVLSISLDGKYLAMGSKDGDICVVDVKK--MEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       245 -~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                       ..+.++.|++.|.+|+.++.|=+|++++-.+  ...+..+ ..| .+..+.+.|..+
T Consensus       432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~-~~~-sg~st~v~Fg~~  487 (506)
T KOG0289|consen  432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL-ADH-SGLSTGVRFGEH  487 (506)
T ss_pred             cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh-hhc-ccccceeeeccc
Confidence             4799999999999999998876677776443  3444444 455 667778877653

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.9e-28  Score=203.73  Aligned_cols=233  Identities=14%  Similarity=0.115  Sum_probs=174.6

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcccccc------ccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCe
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINL------LAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGH  135 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~  135 (301)
                      -..|.....++++..+++++.+.....|+...+......      .........|.+.|.+++|+| ++++|++|+.|++
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            445666666677666777777776777775544321110      000112335788999999999 8899999999999


Q ss_pred             EEEEeCCCcc-------eecccccCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEcc
Q 022184          136 LRIMHWPSLR-------IILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (301)
Q Consensus       136 i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  207 (301)
                      |++||+.++.       .+..+.+|...|.+++|+|++ ++|++++.|+.|+|||+++++.+..+..|. ..|.+++|+|
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~-~~V~sla~sp  178 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS-DQITSLEWNL  178 (493)
T ss_pred             EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC-CceEEEEEEC
Confidence            9999997642       345667788899999999975 699999999999999999998888877654 4699999999


Q ss_pred             CCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCC-cEEEEEcCCCCEEEEee----CCCcEEEEeCCCceeeccc
Q 022184          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDGKYLAMGS----KDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~----~d~~i~i~~~~~~~~~~~~  282 (301)
                      ++..     +++++.|+.|++||+++++.+..+..|... ...+.|.+++..+++++    .|+.|++||+++.......
T Consensus       179 dG~l-----Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~  253 (493)
T PTZ00421        179 DGSL-----LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST  253 (493)
T ss_pred             CCCE-----EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence            9997     789999999999999999988888877654 45678999887777654    4789999999876433222


Q ss_pred             cccccCccEEEEEEccCCC
Q 022184          283 KRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       283 ~~~~~~~~v~~~~~spdg~  301 (301)
                      ...+....+....|+||++
T Consensus       254 ~~~d~~~~~~~~~~d~d~~  272 (493)
T PTZ00421        254 VDLDQSSALFIPFFDEDTN  272 (493)
T ss_pred             eccCCCCceEEEEEcCCCC
Confidence            1222134566667888763

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=9.7e-31  Score=203.63  Aligned_cols=234  Identities=17%  Similarity=0.198  Sum_probs=193.4

Q ss_pred             eeccccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC
Q 022184           55 VTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (301)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (301)
                      ..+.+.+|+..|.++.|.| .+.+|++++.|+.|+||++.......      .....|..+|..++|+++|..+++++.|
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l------rtf~gH~k~Vrd~~~s~~g~~fLS~sfD  279 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL------RTFKGHRKPVRDASFNNCGTSFLSASFD  279 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee------hhhhcchhhhhhhhccccCCeeeeeecc
Confidence            4567899999999999999 88899999999999999998733211      2344588999999999999999999999


Q ss_pred             CeEEEEeCCCcceecccccCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc
Q 022184          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (301)
                      +.|++||.++|+++..+. ....++++.|+|++ +.+++|+.|+.|+.||+|+++.++.+..|- +.|..+.|-++|++ 
T Consensus       280 ~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL-g~i~~i~F~~~g~r-  356 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL-GAILDITFVDEGRR-  356 (503)
T ss_pred             eeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh-hheeeeEEccCCce-
Confidence            999999999999987764 34578999999988 789999999999999999999888876554 46999999999998 


Q ss_pred             eEEEEEEeCCcceEEEEEccCceEeeeeec-cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeec--cccccc-cC
Q 022184          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSKRLH-LG  288 (301)
Q Consensus       213 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~--~~~~~~-~~  288 (301)
                          .++.++|+.+++|+.+..-++..... ......++..+|+++++++-+.|+.|.+|.+...-...  ....+| ..
T Consensus       357 ----FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va  432 (503)
T KOG0282|consen  357 ----FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA  432 (503)
T ss_pred             ----EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence                78899999999999988766644332 23466789999999999999999999999976532221  122444 14


Q ss_pred             ccEEEEEEccCCC
Q 022184          289 TSIALVEFCPTQR  301 (301)
Q Consensus       289 ~~v~~~~~spdg~  301 (301)
                      +.-..+.|||||+
T Consensus       433 Gys~~v~fSpDG~  445 (503)
T KOG0282|consen  433 GYSCQVDFSPDGR  445 (503)
T ss_pred             CceeeEEEcCCCC
Confidence            5677899999985

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=5.2e-30  Score=184.17  Aligned_cols=204  Identities=14%  Similarity=0.159  Sum_probs=178.7

Q ss_pred             ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEe
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d  140 (301)
                      .|.--|.+++|+.|.++|++|+.+..+++||++..+.+.      ...-.|.+.|+.+-|....+.|+++++|++||+||
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App------~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD  171 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP------KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWD  171 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc------hhhcCCCCcceeEEEeccCceEEeeccCCceEEEE
Confidence            577889999999999999999999999999998876633      23335789999999999888999999999999999


Q ss_pred             CCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      .++++.+..+. -..+|+++.++++|++|.++ ..+.|+.||..+-..+..+..+.  .|.+...+|+...     ++.+
T Consensus       172 ~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~--nV~SASL~P~k~~-----fVaG  242 (334)
T KOG0278|consen  172 HRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPC--NVESASLHPKKEF-----FVAG  242 (334)
T ss_pred             eccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCcc--ccccccccCCCce-----EEec
Confidence            99999987774 45689999999999866554 56889999999999888887654  4899999999865     6889


Q ss_pred             CCcceEEEEEccCceEeeee-eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184          221 GDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                      ++|..++.||..+++.+..+ ++|.++|.++.|+|+|...++|++||+|++|....++..
T Consensus       243 ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  243 GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            99999999999999998875 889999999999999999999999999999999776544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-29  Score=192.85  Aligned_cols=245  Identities=13%  Similarity=0.097  Sum_probs=190.1

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...||..+.|+||.  ..++++|       .+..+.+|+.+.......       --.+|...+.+++|.|||..+++|+
T Consensus       268 h~~~V~yi~wSPDd--ryLlaCg-------~~e~~~lwDv~tgd~~~~-------y~~~~~~S~~sc~W~pDg~~~V~Gs  331 (519)
T KOG0293|consen  268 HSQPVSYIMWSPDD--RYLLACG-------FDEVLSLWDVDTGDLRHL-------YPSGLGFSVSSCAWCPDGFRFVTGS  331 (519)
T ss_pred             ccCceEEEEECCCC--CeEEecC-------chHheeeccCCcchhhhh-------cccCcCCCcceeEEccCCceeEecC
Confidence            35789999999883  3444443       344456777665442211       1133568899999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+++..||+++.....  +    . ......|.+++..+||+++++.+.|..|++++.++..... +...+.+|++++.
T Consensus       332 ~dr~i~~wdlDgn~~~~--W----~-gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~i  403 (519)
T KOG0293|consen  332 PDRTIIMWDLDGNILGN--W----E-GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSI  403 (519)
T ss_pred             CCCcEEEecCCcchhhc--c----c-ccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEE
Confidence            99999999998765310  0    0 0122568999999999999999999999999987765532 3345679999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC-CeeEEEEccCC-CcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKDG-TKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      +.|++++++.-.+..+++||++..+.+..+.++..+ .+-.-+|---. ..     +++|++|+.|++|+..+++++..+
T Consensus       404 S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f-----iaSGSED~kvyIWhr~sgkll~~L  478 (519)
T KOG0293|consen  404 SKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF-----IASGSEDSKVYIWHRISGKLLAVL  478 (519)
T ss_pred             cCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce-----EEecCCCceEEEEEccCCceeEee
Confidence            999999999999999999999988888777766543 22233444333 33     799999999999999999999999


Q ss_pred             eccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCCCc
Q 022184          241 RLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       241 ~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      .+|...|++++|+|. ..++|+++.||+|+||.....
T Consensus       479 sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  479 SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            999999999999994 578999999999999987643

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=6e-29  Score=192.32  Aligned_cols=288  Identities=13%  Similarity=0.129  Sum_probs=206.8

Q ss_pred             ceeEEEeeeecCCCc-------cEEEecCCccccCCcCceeEeeeCCCcc-------eeee-----------C-Cceecc
Q 022184            5 GTVTCGSWIKRPENV-------NLVVLGKSSRASSSPSVLEIFSFDPKTT-------SVYT-----------S-PLVTYV   58 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~-------~~~~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~-----------~-~~~~~~   58 (301)
                      -|-..+.|.|+....       .-+++|..... +.++.+.|-++.....       ....           . ......
T Consensus        41 WPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~-~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~  119 (422)
T KOG0264|consen   41 WPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSG-SEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEISQ  119 (422)
T ss_pred             ccceEEEEcCCcccccCCCceeEEEEEEeecCC-CCccEEEEEeecCCCcccccccccccccccccCCccccccceEEEE
Confidence            467789999973321       35566664332 2667777775422110       0000           0 011112


Q ss_pred             ccccCCcceEEEECCCCCeE-EEEecCCcEEEEEEcCCccccccc---cccCCCCCCCCCeeEEEEee-CCCEEEEeecC
Q 022184           59 FDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLL---AKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD  133 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~~w~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d  133 (301)
                      .-.|.+.|+.+...|+...| |+.+..+.+.|||...........   ...+....|...-.+++|++ ..-.|++++.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            24589999999999977654 566777999999998765433321   11223344666678899999 44578999999


Q ss_pred             CeEEEEeCCCcce-------ecccccCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCC--CceEEEEeecCCCCeeEE
Q 022184          134 GHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELC  203 (301)
Q Consensus       134 g~i~v~d~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~v~~~  203 (301)
                      +.|++||+.....       ...+.+|...|..++|+| +...|++++.|+.+.|||+|+  .++...... +...+.++
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~~  278 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNCV  278 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-cCCceeEE
Confidence            9999999965432       234567778999999999 556899999999999999995  444444444 45679999


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEccCce-EeeeeeccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCCCceee--
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEIN--  279 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~--  279 (301)
                      +|+|-+..+    +++++.|++|.+||+|+.+ ++..+..|+..|..+.|||+ ...||+++.|+++.+||+..-...  
T Consensus       279 ~fnp~~~~i----lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~  354 (422)
T KOG0264|consen  279 AFNPFNEFI----LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS  354 (422)
T ss_pred             EeCCCCCce----EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence            999998763    7899999999999999764 56788999999999999996 578999999999999999742111  


Q ss_pred             -----------ccccccccCccEEEEEEccC
Q 022184          280 -----------HWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       280 -----------~~~~~~~~~~~v~~~~~spd  299 (301)
                                 ..+..+| ...|..+.|+|+
T Consensus       355 ~eda~dgppEllF~HgGH-~~kV~DfsWnp~  384 (422)
T KOG0264|consen  355 PEDAEDGPPELLFIHGGH-TAKVSDFSWNPN  384 (422)
T ss_pred             hhhhccCCcceeEEecCc-ccccccccCCCC
Confidence                       1233678 889999999996

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.7e-29  Score=186.91  Aligned_cols=222  Identities=12%  Similarity=0.178  Sum_probs=180.4

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc---ccccc--------cccCCCCCCCCCeeEEEEeeCC
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT---DINLL--------AKKMPPLQDAGPQKCLSFSVDG  124 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~---~~~~~--------~~~~~~~~~~~~v~~~~~s~~~  124 (301)
                      ...+..|+.++.+.+|+|||.++|+|+.|..|+|+|++..-.   .....        ........|..+|+++.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            456788999999999999999999999999999999972211   00000        0011234577899999999999


Q ss_pred             CEEEEeecCCeEEEEeCCCcce--ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--ecCCCCe
Q 022184          125 SRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKI  200 (301)
Q Consensus       125 ~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v  200 (301)
                      ..|++|+.|++|++||+.....  ..+......+|.++.|+|.|.+|+.|.+-..+++||+++-++...-.  ..+.+.|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            9999999999999999965433  23333445689999999999999999999999999999987765443  2345579


Q ss_pred             eEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee-ccC-CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184          201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~  278 (301)
                      +++.+++.++.     .++++.||.|++||--+.+++..+. .|. ..|.+..|..+|+|+++.+.|..+++|++.++..
T Consensus       265 ~~V~Ys~t~~l-----YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  265 TQVRYSSTGSL-----YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             eEEEecCCccE-----EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence            99999999997     6899999999999988888887664 343 5789999999999999999999999999999887


Q ss_pred             eccc
Q 022184          279 NHWS  282 (301)
Q Consensus       279 ~~~~  282 (301)
                      +...
T Consensus       340 l~~Y  343 (430)
T KOG0640|consen  340 LKEY  343 (430)
T ss_pred             EEEE
Confidence            7654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.4e-29  Score=201.66  Aligned_cols=242  Identities=13%  Similarity=0.230  Sum_probs=204.1

Q ss_pred             CCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCC
Q 022184           16 PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG   95 (301)
Q Consensus        16 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~   95 (301)
                      ..+.+++.+||      .|+.|++|.+........ .+ ....++.|.+.|+.++...+++.|++++.|-+|++|+....
T Consensus        34 a~~~ryLfTgG------RDg~i~~W~~~~d~~~~s-~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~  105 (735)
T KOG0308|consen   34 APNGRYLFTGG------RDGIIRLWSVTQDSNEPS-TP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKD  105 (735)
T ss_pred             CCCCceEEecC------CCceEEEeccccccCCcc-cc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccC
Confidence            33456777766      788889999876654321 11 24568899999999999999999999999999999999766


Q ss_pred             ccccccccccCCCCCCCCCeeEEEE-eeCCCEEEEeecCCeEEEEeCCCcce--e--------cccc-cCCccEEEEEec
Q 022184           96 ATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDGHLRIMHWPSLRI--I--------LDEP-KAHKSVLDMDFS  163 (301)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~v~d~~~~~~--~--------~~~~-~~~~~i~~~~~~  163 (301)
                      ...-     ....-.|...|.|+++ .++..++|+|+-|+.|.+||++++..  +        ..+. ++..+|++++.+
T Consensus       106 ~~~c-----~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N  180 (735)
T KOG0308|consen  106 NTFC-----MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN  180 (735)
T ss_pred             cchh-----HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC
Confidence            4100     0122248899999999 77888999999999999999997732  1        1222 556789999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  243 (301)
                      +.|..|++|+..+.+++||.++++.+..+.+|.. .|..+..++||..     +++++.||+|++||+...+++.++..|
T Consensus       181 ~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~-----~ls~sSDgtIrlWdLgqQrCl~T~~vH  254 (735)
T KOG0308|consen  181 QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTR-----LLSASSDGTIRLWDLGQQRCLATYIVH  254 (735)
T ss_pred             CcceEEEecCcccceEEeccccccceeeeecccc-ceEEEEEcCCCCe-----EeecCCCceEEeeeccccceeeeEEec
Confidence            9999999999999999999999999999997766 5999999999998     899999999999999999999999999


Q ss_pred             CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      ...|+++..+|+-..+++|+.||.|..=|+++.
T Consensus       255 ~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  255 KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             cCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            999999999999999999999999999999884

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.6e-28  Score=208.31  Aligned_cols=258  Identities=17%  Similarity=0.175  Sum_probs=203.0

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCc----------ceeeeCCceeccccccCCcceEEEEC
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT----------TSVYTSPLVTYVFDESEGDPMTIAVN   72 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~~~h~~~v~~~~~~   72 (301)
                      ..+.|.|+.|++|   +.++|.|+      .|..+.||.+....          ......-.....+.+|...|..++|+
T Consensus        68 h~~sv~CVR~S~d---G~~lAsGS------DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   68 HDGSVNCVRFSPD---GSYLASGS------DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             ccCceeEEEECCC---CCeEeecc------CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            4588999999999   78999988      55667999998411          11112234566789999999999999


Q ss_pred             CCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (301)
Q Consensus        73 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  152 (301)
                      |++.+|++++.|++|.+|+..+.+...       ....|.+.|..+.|.|-|++||+-+.|++|++|+..+......+..
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF~~~~-------vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~  211 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTFELLK-------VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITK  211 (942)
T ss_pred             CCccEEEEecccceEEEEccccceeee-------eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeecc
Confidence            999999999999999999998885522       2234788999999999999999999999999999776555444433


Q ss_pred             CC------ccEEEEEecCCCcEEEEEeC----CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccC--------CCc---
Q 022184          153 AH------KSVLDMDFSLDSEFLATTST----DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD--------GTK---  211 (301)
Q Consensus       153 ~~------~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~---  211 (301)
                      +.      ..+..+.|+|||.+|++...    -..+.|.+-.+.+.-..+.+|+. ++.+++|+|.        |..   
T Consensus       212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~  290 (942)
T KOG0973|consen  212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQP  290 (942)
T ss_pred             chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCC
Confidence            22      35788999999999998642    23688888777776777777665 8999999982        111   


Q ss_pred             -ceEEEEEEeCCcceEEEEEccCceEeeee-eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          212 -PFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       212 -~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                       .++.++++|+.|++|.||.....+++... ......|..++|+|||..|++++.||+|.++..+..+
T Consensus       291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence             13346899999999999999877776433 2345789999999999999999999999999987643

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.4e-28  Score=181.48  Aligned_cols=240  Identities=14%  Similarity=0.197  Sum_probs=181.4

Q ss_pred             CceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccc-cccccC-------------------------
Q 022184           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-LLAKKM-------------------------  106 (301)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~-~~~~~~-------------------------  106 (301)
                      |.....+++|.+.|++++|+.||++|++++.|++|++|+++....... ......                         
T Consensus        76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence            445567899999999999999999999999999999999976543000 000000                         


Q ss_pred             --------------------------CCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184          107 --------------------------PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (301)
Q Consensus       107 --------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  160 (301)
                                                ....|...+..+-...++.+|++++.|..|.+|+++ |+.+..+...+..-+..
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence                                      000122233344444466789999999999999998 77777776666677888


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCC---CC-----ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTE---DG-----VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  232 (301)
                      +.+|+|+++++++.--.|++|.+-   .|     ..+..+++|. ..|..++|+++...     +++.+.||++++||..
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~-saV~~~aFsn~S~r-----~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ-SAVLAAAFSNSSTR-----AVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch-hheeeeeeCCCcce-----eEEEecCCcEEEeecc
Confidence            999999999999998999999863   22     2234566654 46999999999998     7999999999999975


Q ss_pred             Cce-------Eeeee----eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          233 TWN-------KIGHK----RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       233 ~~~-------~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      -.-       .+...    .........+.++|+|+.||.+.. ..+++|..++++....++..| ...|.+++|+||||
T Consensus       309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h-~~~Is~is~~~~g~  386 (420)
T KOG2096|consen  309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIH-STTISSISYSSDGK  386 (420)
T ss_pred             ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhh-cCceeeEEecCCCc
Confidence            211       11111    111234457999999998888754 479999999999998888899 99999999999996

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.9e-27  Score=175.66  Aligned_cols=261  Identities=14%  Similarity=0.101  Sum_probs=202.6

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|..+.|+|.  ...++|.       +-|+.+++|+++.+...+         .-.|..++.+++|.+ ...+++|+.
T Consensus        13 ~d~IS~v~f~~~--~~~LLvs-------sWDgslrlYdv~~~~l~~---------~~~~~~plL~c~F~d-~~~~~~G~~   73 (323)
T KOG1036|consen   13 EDGISSVKFSPS--SSDLLVS-------SWDGSLRLYDVPANSLKL---------KFKHGAPLLDCAFAD-ESTIVTGGL   73 (323)
T ss_pred             hhceeeEEEcCc--CCcEEEE-------eccCcEEEEeccchhhhh---------heecCCceeeeeccC-CceEEEecc
Confidence            456899999944  3444443       388899999998763221         235789999999987 457899999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      ||.|+.+|+.++..        .....|..++.|+.+++....+++|+.|++|++||.+.......+. ..+.|.++...
T Consensus        74 dg~vr~~Dln~~~~--------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~  144 (323)
T KOG1036|consen   74 DGQVRRYDLNTGNE--------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS  144 (323)
T ss_pred             CceEEEEEecCCcc--------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc
Confidence            99999999998865        4445688999999999988889999999999999998744443332 33488888776


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEE-eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc----eEee
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----NKIG  238 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----~~~~  238 (301)
                        ++.|+.|+.|..+.+||+++....... ...-...++++++-|++.-     .+.++-||+|.+=.++..    +...
T Consensus       145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-----y~~sSieGRVavE~~d~s~~~~skky  217 (323)
T KOG1036|consen  145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-----YVVSSIEGRVAVEYFDDSEEAQSKKY  217 (323)
T ss_pred             --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-----eEEEeecceEEEEccCCchHHhhhce
Confidence              778999999999999999987654422 2233456899999997776     577888999988766654    2233


Q ss_pred             eeeccC---------CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          239 HKRLLR---------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       239 ~~~~~~---------~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .++.|.         .+|++++|+|--..+++|+.||.|.+||+.+.+.+..+ ... ...|.+++|+.||.
T Consensus       218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~-~~~-~~SI~slsfs~dG~  287 (323)
T KOG1036|consen  218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL-AKY-ETSISSLSFSMDGS  287 (323)
T ss_pred             eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc-cCC-CCceEEEEeccCCC
Confidence            444443         37999999999899999999999999999999888876 334 57799999999983

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=4.6e-28  Score=201.88  Aligned_cols=254  Identities=15%  Similarity=0.216  Sum_probs=207.7

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ..+.|..|..+     .++.|.      .++++++|+.....  .     ....+.+|.+.|.++++...+.+|++|+.|
T Consensus       209 ~~~~~~q~~~~-----~~~~~s------~~~tl~~~~~~~~~--~-----i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D  270 (537)
T KOG0274|consen  209 HVVLCLQLHDG-----FFKSGS------DDSTLHLWDLNNGY--L-----ILTRLVGHFGGVWGLAFPSGGDKLVSGSTD  270 (537)
T ss_pred             chhhhheeecC-----eEEecC------CCceeEEeecccce--E-----EEeeccCCCCCceeEEEecCCCEEEEEecC
Confidence            34566677733     566655      56667777654322  2     123388999999999998878899999999


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecC
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~  164 (301)
                      .++++||..++++...+.       .|...+.++...  ...+++|+.|.+|++|+++++..+..+.+|..+|.++..+ 
T Consensus       271 ~t~rvWd~~sg~C~~~l~-------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-  340 (537)
T KOG0274|consen  271 KTERVWDCSTGECTHSLQ-------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-  340 (537)
T ss_pred             CcEEeEecCCCcEEEEec-------CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence            999999999998743332       366777777764  4578889999999999999999988887799999999998 


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-eEeeeeecc
Q 022184          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLL  243 (301)
Q Consensus       165 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~  243 (301)
                       +.++++|+.|++|++||+.+++++..+.+|. ..|.++.+.+. ..     +++++.|+.|++||+++. +++..+..|
T Consensus       341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~-~~V~sl~~~~~-~~-----~~Sgs~D~~IkvWdl~~~~~c~~tl~~h  412 (537)
T KOG0274|consen  341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT-GRVYSLIVDSE-NR-----LLSGSLDTTIKVWDLRTKRKCIHTLQGH  412 (537)
T ss_pred             -CCEEEEEecCceEEEEEhhhceeeeeecCCc-ceEEEEEecCc-ce-----EEeeeeccceEeecCCchhhhhhhhcCC
Confidence             8899999999999999999999999999864 57999988776 44     689999999999999999 888888888


Q ss_pred             CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEc
Q 022184          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (301)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~s  297 (301)
                      ..-+..+.+  .+++|++++.|+.|++||..+++.++.+...| ...|+.+++.
T Consensus       413 ~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~-~~~v~~l~~~  463 (537)
T KOG0274|consen  413 TSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRH-VGGVSALALG  463 (537)
T ss_pred             ccccccccc--ccceeEeccccccEEEeecccCceeeeeccCC-cccEEEeecC
Confidence            887766554  57899999999999999999999999885435 6788888774

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.5e-28  Score=186.10  Aligned_cols=186  Identities=37%  Similarity=0.593  Sum_probs=156.6

Q ss_pred             CeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe
Q 022184          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (301)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  193 (301)
                      .-..++|+++|..+++++.||.+|+|++++...+.....|+..|.++.|+|||+.|++.+.| ..+||+.+++..+....
T Consensus       146 ~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  146 QQKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             cceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            33889999999999999999999999999988888888999999999999999999999999 99999999998777665


Q ss_pred             -ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE-----eeeeeccCCCcEEEEEcCCCCEEEEeeCCCc
Q 022184          194 -RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGD  267 (301)
Q Consensus       194 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  267 (301)
                       ...+.....+.|+.|+....+.+++....-+.|..||+..+..     ..........|++++.|+||++++.|+.||.
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs  304 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS  304 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence             3344567788999887555555566666677788877655432     1122222457999999999999999999999


Q ss_pred             EEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       268 i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |.|++..+.+.++..++.| ...|+.+.|+||.+
T Consensus       305 Vai~~~~~lq~~~~vk~aH-~~~VT~ltF~Pdsr  337 (398)
T KOG0771|consen  305 VAIYDAKSLQRLQYVKEAH-LGFVTGLTFSPDSR  337 (398)
T ss_pred             EEEEEeceeeeeEeehhhh-eeeeeeEEEcCCcC
Confidence            9999999999999999999 99999999999964

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=6.5e-28  Score=185.74  Aligned_cols=225  Identities=15%  Similarity=0.197  Sum_probs=197.5

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~  143 (301)
                      ..+.++...|....+++|+.|..+.++|...++...       ....|...|+.+.|+|+...+++++.|..|+||....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~-------~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~  292 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA-------TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL  292 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh-------hccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence            457888888887899999999999999998877622       2234678899999999999999999999999999988


Q ss_pred             cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec-CCCCeeEEEEccCCCcceEEEEEEeCC
Q 022184          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGD  222 (301)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (301)
                      .........|..+|+.+..+|.|.||++++.|++..+.|++++..+...... .+-.+++.+|+|||..     +.++..
T Consensus       293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLi-----fgtgt~  367 (506)
T KOG0289|consen  293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLI-----FGTGTP  367 (506)
T ss_pred             ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceE-----EeccCC
Confidence            7777778889999999999999999999999999999999999998877643 3345899999999986     789999


Q ss_pred             cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |+.|++||+.++..+..+.+|.++|..++|+.+|-||++++.|+.|++||++..+....+.... ...|.++.|.+.|+
T Consensus       368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt  445 (506)
T KOG0289|consen  368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGT  445 (506)
T ss_pred             CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-cccceeEEEcCCCC
Confidence            9999999999999999999999999999999999999999999999999999988777664333 55799999988874

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.6e-28  Score=187.85  Aligned_cols=236  Identities=15%  Similarity=0.141  Sum_probs=193.3

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      .++|+.+.|-++   +.+++..+      .|+.+++|..+...        ...++.+|++.|+++.|......+++++.
T Consensus       219 ~g~it~~d~d~~---~~~~iAas------~d~~~r~Wnvd~~r--------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~  281 (459)
T KOG0288|consen  219 LGNITSIDFDSD---NKHVIAAS------NDKNLRLWNVDSLR--------LRHTLSGHTDKVTAAKFKLSHSRVVSGSA  281 (459)
T ss_pred             CCCcceeeecCC---CceEEeec------CCCceeeeeccchh--------hhhhhcccccceeeehhhccccceeeccc
Confidence            478999999877   44444433      66777999987543        25678999999999999887777999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      |.+|++||+....+.....        ....+..+..+  ...+++|..|+.|++||.++..+....+.+ +.|+++..+
T Consensus       282 DRtiK~WDl~k~~C~kt~l--------~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls  350 (459)
T KOG0288|consen  282 DRTIKLWDLQKAYCSKTVL--------PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLS  350 (459)
T ss_pred             cchhhhhhhhhhheecccc--------ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeec
Confidence            9999999999876632222        23445566655  557889999999999999999887777554 599999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC---CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      +++..+.+++.|.++.+.|+++.+....+....   ....+.+.|||++.+     +++|+.||.|+||++.++++...+
T Consensus       351 ~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y-----vaAGS~dgsv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  351 MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY-----VAAGSADGSVYIWSVFTGKLEKVL  425 (459)
T ss_pred             cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce-----eeeccCCCcEEEEEccCceEEEEe
Confidence            999999999999999999999988877765321   223788999999998     899999999999999999988777


Q ss_pred             eccCC--CcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          241 RLLRK--PASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       241 ~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      .....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       426 ~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  426 SLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            66554  499999999999999999999999993

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=3.3e-27  Score=197.47  Aligned_cols=232  Identities=9%  Similarity=0.064  Sum_probs=167.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeE-EEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~   81 (301)
                      ...+|++++|+|+.  ..++|+|+      .|+.+++|++................+.+|...|.+++|+|++..+ +++
T Consensus        73 H~~~V~~lafsP~~--~~lLASgS------~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         73 HTSSILDLQFNPCF--SEILASGS------EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             CCCCEEEEEEcCCC--CCEEEEEe------CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            45789999999752  46788766      7788899998643321111111233578899999999999998764 688


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEE--
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD--  159 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~--  159 (301)
                      +.|++|++||+.+++....        +.+...|.+++|+|+|++|++++.|+.|++||+++++.+..+..|.+.+..  
T Consensus       145 S~DgtIrIWDl~tg~~~~~--------i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~  216 (568)
T PTZ00420        145 GFDSFVNIWDIENEKRAFQ--------INMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKN  216 (568)
T ss_pred             eCCCeEEEEECCCCcEEEE--------EecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEE
Confidence            9999999999987764211        224567999999999999999999999999999999988888777764332  


Q ss_pred             ---EEecCCCcEEEEEeCCC----cEEEEeCCC-CceEEEEeecCCCC-eeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          160 ---MDFSLDSEFLATTSTDG----SARIWKTED-GVAWTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       160 ---~~~~~~~~~l~~~~~d~----~i~i~d~~~-~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                         ..|++++.+|++++.|+    +|+|||++. ++++..+..+.... +......+++..     +++|..|+.|++|+
T Consensus       217 v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l-----~lsGkGD~tIr~~e  291 (568)
T PTZ00420        217 IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLI-----YLIGKGDGNCRYYQ  291 (568)
T ss_pred             EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCE-----EEEEECCCeEEEEE
Confidence               34568889999988764    799999995 55665554333222 222333344554     57888999999999


Q ss_pred             ccCceEeeeee--ccCCCcEEEEEcCCC
Q 022184          231 ISTWNKIGHKR--LLRKPASVLSISLDG  256 (301)
Q Consensus       231 ~~~~~~~~~~~--~~~~~v~~~~~s~~~  256 (301)
                      +..+... .+.  .+..+..+++|.|..
T Consensus       292 ~~~~~~~-~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        292 HSLGSIR-KVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ccCCcEE-eecccccCCCccceEEcccc
Confidence            9876432 222  134678889999963

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.3e-29  Score=206.31  Aligned_cols=229  Identities=17%  Similarity=0.246  Sum_probs=206.1

Q ss_pred             cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEE
Q 022184           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (301)
                      .+..|...|.++..-..++.+++|+.|..+-+|.+......       .....|..+|.++.|+++..+|++|+.+|+|+
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i-------~S~~~hespIeSl~f~~~E~LlaagsasgtiK   95 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI-------TSLTGHESPIESLTFDTSERLLAAGSASGTIK   95 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh-------heeeccCCcceeeecCcchhhhcccccCCcee
Confidence            35578888999988778889999999999999998765542       22345889999999999999999999999999


Q ss_pred             EEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE
Q 022184          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (301)
                      +||+...+.++.+.+|...+.++.|+|-+.+++.++.|..+++||.+...+...+..| ...+..+.|+|+|++     +
T Consensus        96 ~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~Gr~-----v  169 (825)
T KOG0267|consen   96 VWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDGRW-----V  169 (825)
T ss_pred             eeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCCce-----e
Confidence            9999999999999999999999999999999999999999999999988899998874 556999999999998     7


Q ss_pred             EEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEc
Q 022184          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~s  297 (301)
                      +.+++|..+++||+..++....+..|...+..+.|+|..-+++.|+.|+++++||+++.+.+.... .. ...|.+++|+
T Consensus       170 ~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~-~~~v~~~~fn  247 (825)
T KOG0267|consen  170 ASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PE-TDGVRSLAFN  247 (825)
T ss_pred             eccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-Cc-cCCceeeeec
Confidence            899999999999999999999999999999999999999999999999999999999999888763 33 6789999999


Q ss_pred             cCCC
Q 022184          298 PTQR  301 (301)
Q Consensus       298 pdg~  301 (301)
                      |||+
T Consensus       248 ~~~~  251 (825)
T KOG0267|consen  248 PDGK  251 (825)
T ss_pred             CCce
Confidence            9985

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.6e-27  Score=183.00  Aligned_cols=272  Identities=17%  Similarity=0.192  Sum_probs=213.0

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~   82 (301)
                      .++|+|++|+|.   ..++.+++      .++.++||.+|........      .+.-...+|.+.+|.|+|. .+++++
T Consensus       213 ~~~I~sv~FHp~---~plllvaG------~d~~lrifqvDGk~N~~lq------S~~l~~fPi~~a~f~p~G~~~i~~s~  277 (514)
T KOG2055|consen  213 HGGITSVQFHPT---APLLLVAG------LDGTLRIFQVDGKVNPKLQ------SIHLEKFPIQKAEFAPNGHSVIFTSG  277 (514)
T ss_pred             cCCceEEEecCC---CceEEEec------CCCcEEEEEecCccChhhe------eeeeccCccceeeecCCCceEEEecc
Confidence            478999999977   45666655      7888899999988765432      2223377899999999999 888999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      ....++.||+.+.+......   ... .....+.....||++++|+..+..|.|.+....+++.+..+ .-.+.|..++|
T Consensus       278 rrky~ysyDle~ak~~k~~~---~~g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-KieG~v~~~~f  352 (514)
T KOG2055|consen  278 RRKYLYSYDLETAKVTKLKP---PYG-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGVVSDFTF  352 (514)
T ss_pred             cceEEEEeeccccccccccC---CCC-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-eeccEEeeEEE
Confidence            99999999998776522111   000 01345677888999999999999999999999998887665 34578999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC------ceE
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST------WNK  236 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~------~~~  236 (301)
                      +.|++.|+.++.+|.|.+||++...+++.+.....-.-+.++.++++.+     +++|+..|.|.|||.++      .++
T Consensus       353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y-----lA~GS~~GiVNIYd~~s~~~s~~PkP  427 (514)
T KOG2055|consen  353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY-----LATGSDSGIVNIYDGNSCFASTNPKP  427 (514)
T ss_pred             ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce-----EEeccCcceEEEeccchhhccCCCCc
Confidence            9999999999999999999999999999987654434567788899997     79999999999999654      234


Q ss_pred             eeeeeccCCCcEEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeccccccc-cCccEEEEEEccCC
Q 022184          237 IGHKRLLRKPASVLSISLDGKYLAMGSK--DGDICVVDVKKMEINHWSKRLH-LGTSIALVEFCPTQ  300 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg  300 (301)
                      +..+......|++++|+||++.||.++.  +..+++-.+.+.....-++... .-+.|++++|||.|
T Consensus       428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s  494 (514)
T KOG2055|consen  428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS  494 (514)
T ss_pred             hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC
Confidence            5555555678999999999999988874  5679999998877655443211 14579999999965

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=5.3e-28  Score=189.75  Aligned_cols=269  Identities=14%  Similarity=0.121  Sum_probs=214.9

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      +.-|.+++.+..   .+.+.+|+       .+.++||++...+...   |............|.++...|||+.|++|+.
T Consensus       419 GEvVcAvtIS~~---trhVyTgG-------kgcVKVWdis~pg~k~---PvsqLdcl~rdnyiRSckL~pdgrtLivGGe  485 (705)
T KOG0639|consen  419 GEVVCAVTISNP---TRHVYTGG-------KGCVKVWDISQPGNKS---PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE  485 (705)
T ss_pred             CcEEEEEEecCC---cceeEecC-------CCeEEEeeccCCCCCC---ccccccccCcccceeeeEecCCCceEEeccc
Confidence            445555666644   56777755       3556999998765432   3322223334677999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      -.++.|||+.......+..     ..........++.+||.+..+++..||.|.|||+.+...++.+.+|.+.+.||..+
T Consensus       486 astlsiWDLAapTprikae-----ltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis  560 (705)
T KOG0639|consen  486 ASTLSIWDLAAPTPRIKAE-----LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  560 (705)
T ss_pred             cceeeeeeccCCCcchhhh-----cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence            9999999998765422211     11112456789999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  243 (301)
                      +||..|-||+-|.+|+-||++++..+.....  ...|.++.++|++.+     ++.+-.++.+.+......+. ..+..|
T Consensus       561 ~dGtklWTGGlDntvRcWDlregrqlqqhdF--~SQIfSLg~cP~~dW-----lavGMens~vevlh~skp~k-yqlhlh  632 (705)
T KOG0639|consen  561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHDF--SSQIFSLGYCPTGDW-----LAVGMENSNVEVLHTSKPEK-YQLHLH  632 (705)
T ss_pred             CCCceeecCCCccceeehhhhhhhhhhhhhh--hhhheecccCCCccc-----eeeecccCcEEEEecCCccc-eeeccc
Confidence            9999999999999999999999887665543  345999999999998     78888899998888765443 467778


Q ss_pred             CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +..|.++.|.+.|+++++.+.|+.+..|...-|..+....  . .++|.+...|.|.|
T Consensus       633 eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E-~SsVlsCDIS~ddk  687 (705)
T KOG0639|consen  633 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--E-SSSVLSCDISFDDK  687 (705)
T ss_pred             ccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--c-cCcceeeeeccCce
Confidence            8999999999999999999999999999999887776543  2 67899888887754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.1e-27  Score=184.38  Aligned_cols=220  Identities=20%  Similarity=0.249  Sum_probs=185.7

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      .++|.+++-+|+|.+|+.++..|.|++|.+.++.....+       ..|-..|+|+.|+.||.+|++|+.||.|.+|.+.
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-------HhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence            678999999999999999989999999999999873332       2466889999999999999999999999999872


Q ss_pred             ---------CcceecccccCCccEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          143 ---------SLRIILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       143 ---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                               +-++...+..|.-+|+++...+.  ..+++|++.|.++++||+..+..+.++..+  ..+.+++.+|.+..
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp--~si~av~lDpae~~  231 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP--SSIKAVALDPAERV  231 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC--CcceeEEEcccccE
Confidence                     23445666677789999988764  358999999999999999999998888754  46999999999997


Q ss_pred             ceEEEEEEeCCcceEEEEEccCce----------------EeeeeeccCC--CcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWN----------------KIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~----------------~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                           ++.|+.+|.|.+.++.+..                .+..+.+|.+  .|++++.+-||.+|++|+.||.|+|||+
T Consensus       232 -----~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  232 -----VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             -----EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence                 7889999999998875432                2445566766  9999999999999999999999999999


Q ss_pred             CCceeeccccccccCccEEEEEEcc
Q 022184          274 KKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       274 ~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      .+.++++.+.. . .++|+.+.+.|
T Consensus       307 ~S~Q~iRtl~~-~-kgpVtnL~i~~  329 (476)
T KOG0646|consen  307 YSKQCIRTLQT-S-KGPVTNLQINP  329 (476)
T ss_pred             chHHHHHHHhh-h-ccccceeEeec
Confidence            99999988742 3 78899988844

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-27  Score=177.72  Aligned_cols=251  Identities=12%  Similarity=0.204  Sum_probs=200.7

Q ss_pred             CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEE------cCCccc-------
Q 022184           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEV------YGGATD-------   98 (301)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~------~~~~~~-------   98 (301)
                      +.|.+.+||.++...        +...+.||.+.|++++|++.+.++++++.|++-.||..      ......       
T Consensus       167 SADhTA~iWs~Esg~--------CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe  238 (481)
T KOG0300|consen  167 SADHTARIWSLESGA--------CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE  238 (481)
T ss_pred             ccccceeEEeecccc--------ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence            467788999886543        24457899999999999999999999999999999982      221100       


Q ss_pred             --------------------cccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEE
Q 022184           99 --------------------INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL  158 (301)
Q Consensus        99 --------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~  158 (301)
                                          ..+-.+......|.+.|.+..|-..|+.+++++.|.+..+||+++++.+..+.+|..+.+
T Consensus       239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt  318 (481)
T KOG0300|consen  239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT  318 (481)
T ss_pred             hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence                                000001112234667788889999999999999999999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE-
Q 022184          159 DMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-  236 (301)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-  236 (301)
                      .++-+|..+++++.+.|.+.++||.+..- .+..+.+|.+ .|+++.|..+.+      ++++++|.+|++||+++.+. 
T Consensus       319 HcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd-tVTS~vF~~dd~------vVSgSDDrTvKvWdLrNMRsp  391 (481)
T KOG0300|consen  319 HCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD-TVTSVVFNTDDR------VVSGSDDRTVKVWDLRNMRSP  391 (481)
T ss_pred             ccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc-ceeEEEEecCCc------eeecCCCceEEEeeeccccCc
Confidence            99999999999999999999999998543 3455666554 699999999988      69999999999999998764 


Q ss_pred             eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeec---cccccccCccEEEEEEccC
Q 022184          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH---WSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~---~~~~~~~~~~v~~~~~spd  299 (301)
                      +..+. ...+++.++.+..++.|+.--.+..|++||+....+.+   ....+| ..-|++.+|..+
T Consensus       392 lATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-rRMV~c~AW~ee  455 (481)
T KOG0300|consen  392 LATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-RRMVTCCAWLEE  455 (481)
T ss_pred             ceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc-ceeeeeeecccc
Confidence            34443 46788999999988899998888999999998765433   344678 888999999754

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.7e-28  Score=198.68  Aligned_cols=245  Identities=17%  Similarity=0.187  Sum_probs=191.5

Q ss_pred             EEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC-CCeEEEEecCCcE
Q 022184            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGC   87 (301)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i   87 (301)
                      .+.|.  .-+.+++|+..      ..+.|.+|++......     .....|..|+..++++.|++. ..+|++|++||.|
T Consensus        92 DVkW~--~~~~NlIAT~s------~nG~i~vWdlnk~~rn-----k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~v  158 (839)
T KOG0269|consen   92 DVKWG--QLYSNLIATCS------TNGVISVWDLNKSIRN-----KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTV  158 (839)
T ss_pred             hcccc--cchhhhheeec------CCCcEEEEecCccccc-----hhhhHhhhhccceeeeeeccCCccEEEecCCCceE
Confidence            35677  34467777755      5566799998763211     113468899999999999985 4578899999999


Q ss_pred             EEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCc-ceecccccCCccEEEEEecCC
Q 022184           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMDFSLD  165 (301)
Q Consensus        88 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~  165 (301)
                      ++||++.......       .......|+.++|+| .+..++++.+.|.+++||++.. +...++..|.++|.++.|+|+
T Consensus       159 K~~DlR~~~S~~t-------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn  231 (839)
T KOG0269|consen  159 KCWDLRSKKSKST-------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN  231 (839)
T ss_pred             EEEeeeccccccc-------ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC
Confidence            9999988765222       222457899999999 7889999999999999999865 455677889999999999999


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-EeeeeeccC
Q 022184          166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLR  244 (301)
Q Consensus       166 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~  244 (301)
                      +.+||||++|++|+|||+.+.+.......+...++.++.|-|...+.+.  ..+-..|-.|+|||++..- +...+..|.
T Consensus       232 r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLA--tcsmv~dtsV~VWDvrRPYIP~~t~~eH~  309 (839)
T KOG0269|consen  232 REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLA--TCSMVVDTSVHVWDVRRPYIPYATFLEHT  309 (839)
T ss_pred             CceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhh--hhhccccceEEEEeeccccccceeeeccC
Confidence            9999999999999999998776655555566778999999999886321  2333467899999998654 346778889


Q ss_pred             CCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q 022184          245 KPASVLSISL-DGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       245 ~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      ..++.++|.. |...+.+++.|+.|..-..++
T Consensus       310 ~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  310 DSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             ccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence            9999999965 567888999999877655544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.6e-26  Score=193.05  Aligned_cols=260  Identities=21%  Similarity=0.245  Sum_probs=205.7

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ...+.++|.++   +.++.+.+      .++.+++|.-.....    .|.   .+.-+...|.+++..  +.+|++++.+
T Consensus        14 ~G~t~i~~d~~---gefi~tcg------sdg~ir~~~~~sd~e----~P~---ti~~~g~~v~~ia~~--s~~f~~~s~~   75 (933)
T KOG1274|consen   14 GGLTLICYDPD---GEFICTCG------SDGDIRKWKTNSDEE----EPE---TIDISGELVSSIACY--SNHFLTGSEQ   75 (933)
T ss_pred             CceEEEEEcCC---CCEEEEec------CCCceEEeecCCccc----CCc---hhhccCceeEEEeec--ccceEEeecc
Confidence            34677889987   44665544      777789987755421    111   122267778888764  5589999999


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecC
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~  164 (301)
                      ++|.+|.+..++....+.       .-.-++++++|+.+|++++.|++|-.|++.++.+......+.+|..+|.++.|+|
T Consensus        76 ~tv~~y~fps~~~~~iL~-------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p  148 (933)
T KOG1274|consen   76 NTVLRYKFPSGEEDTILA-------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP  148 (933)
T ss_pred             ceEEEeeCCCCCccceee-------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence            999999998877532221       1345789999999999999999999999999998888888999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe
Q 022184          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (301)
Q Consensus       165 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  237 (301)
                      ++++||+.+.||.|++||+.++.....+..-.       ...+..++|+|++..     ++..+.|+.|++|+..+++..
T Consensus       149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-----la~~~~d~~Vkvy~r~~we~~  223 (933)
T KOG1274|consen  149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-----LAVPPVDNTVKVYSRKGWELQ  223 (933)
T ss_pred             CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-----EEeeccCCeEEEEccCCceeh
Confidence            99999999999999999999988776664311       235678999999776     577788999999999999876


Q ss_pred             eeeec--cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          238 GHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       238 ~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      ..+..  +...+..++|+|+|+|||+++.||.|.|||.++-+. +    .. ...|.+++|.|++
T Consensus       224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~----~~-~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H----EF-KRAVCCEAWKPNA  282 (933)
T ss_pred             eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c----cc-cceeEEEecCCCC
Confidence            55543  234489999999999999999999999999998221 1    12 5789999999986

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.5e-28  Score=184.12  Aligned_cols=261  Identities=14%  Similarity=0.166  Sum_probs=209.4

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|.|++=+|.  ..+.++.|+      .||.++||++....        ....+..|.+.|..++++.  ..+++++.
T Consensus        66 rdGV~~lakhp~--~ls~~aSGs------~DG~VkiWnlsqR~--------~~~~f~AH~G~V~Gi~v~~--~~~~tvgd  127 (433)
T KOG0268|consen   66 RDGVSCLAKHPN--KLSTVASGS------CDGEVKIWNLSQRE--------CIRTFKAHEGLVRGICVTQ--TSFFTVGD  127 (433)
T ss_pred             ccccchhhcCcc--hhhhhhccc------cCceEEEEehhhhh--------hhheeecccCceeeEEecc--cceEEecC
Confidence            356888887754  346677766      67788999986533        2456889999999999986  67889999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      |.+|+.|.++...         ...+.....+..+.-+..++.++++++  .|.|||.....++..+.-..+.|.++.|+
T Consensus       128 DKtvK~wk~~~~p---------~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfN  196 (433)
T KOG0268|consen  128 DKTVKQWKIDGPP---------LHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFN  196 (433)
T ss_pred             CcceeeeeccCCc---------ceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecC
Confidence            9999999988731         233334456667777777778888874  59999998888888888888899999999


Q ss_pred             CCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Eeeeee
Q 022184          164 LDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKR  241 (301)
Q Consensus       164 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~  241 (301)
                      |... .|++++.|+.|.+||++++.++..+....  ..+.++|+|.+-.     ++++.+|..++.||++..+ ++....
T Consensus       197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafn-----F~~a~ED~nlY~~DmR~l~~p~~v~~  269 (433)
T KOG0268|consen  197 PVETSILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFN-----FVAANEDHNLYTYDMRNLSRPLNVHK  269 (433)
T ss_pred             CCcchheeeeccCCceEEEecccCCccceeeeec--cccceecCccccc-----eeeccccccceehhhhhhcccchhhc
Confidence            9665 67778899999999999999988876443  4688999995544     5889999999999998754 456678


Q ss_pred             ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .|...|.++.|||.|+-+++|+.|.+|+||.++.+.........- -..|.++.||.|.+
T Consensus       270 dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dsk  328 (433)
T KOG0268|consen  270 DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSK  328 (433)
T ss_pred             ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-hheeeEEEEecccc
Confidence            888999999999999999999999999999999887665543333 56799999999875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.4e-28  Score=199.44  Aligned_cols=274  Identities=13%  Similarity=0.128  Sum_probs=200.6

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~   82 (301)
                      ..+..+++-+++   .+.+++++.       ..+.+|.+.++.....-.... ..-+.-...+..+.|+. +.++||+++
T Consensus        39 k~~~nAIs~nr~---~~qiv~AGr-------s~lklyai~~~~~~~~~~~~~-k~kqn~~~S~~DVkW~~~~~NlIAT~s  107 (839)
T KOG0269|consen   39 KAKANAISVNRD---INQIVVAGR-------SLLKLYAINPNDFSEKCNHRF-KTKQNKFYSAADVKWGQLYSNLIATCS  107 (839)
T ss_pred             ccccceEeecCC---cceeEEecc-------cceeeEeeCcccCCcceeeec-ccccceeeehhhcccccchhhhheeec
Confidence            344555666655   445555442       345788888876543211000 00111123467788875 567999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      ..|.|.+||+........    ......|...+.++.|++ ...+|++|+.||.|++||++..+....+......|.++.
T Consensus       108 ~nG~i~vWdlnk~~rnk~----l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~  183 (839)
T KOG0269|consen  108 TNGVISVWDLNKSIRNKL----LTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK  183 (839)
T ss_pred             CCCcEEEEecCccccchh----hhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence            999999999976321111    112235888999999999 678899999999999999998888777777778999999


Q ss_pred             ecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       162 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      |+| .+.+|+++.+.|.+++||+|...........|.++|.++.|+|++.+     +++|+.|++|+|||+.+.+.....
T Consensus       184 fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~-----lATGGRDK~vkiWd~t~~~~~~~~  258 (839)
T KOG0269|consen  184 FSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREW-----LATGGRDKMVKIWDMTDSRAKPKH  258 (839)
T ss_pred             eccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCce-----eeecCCCccEEEEeccCCCcccee
Confidence            999 67789999999999999999865544333445678999999998887     899999999999999876543333


Q ss_pred             ecc-CCCcEEEEEcCCCC-EEEEee--CCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          241 RLL-RKPASVLSISLDGK-YLAMGS--KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       241 ~~~-~~~v~~~~~s~~~~-~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      ..+ ..++..+.|-|... .||+++  .|-.|+|||++-.-........| ...++.++|-.
T Consensus       259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W~~  319 (839)
T KOG0269|consen  259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH-TDSVTGIAWDS  319 (839)
T ss_pred             EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc-CccccceeccC
Confidence            332 46899999999765 456654  46789999998876666666778 88888898854

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.3e-27  Score=169.16  Aligned_cols=232  Identities=13%  Similarity=0.122  Sum_probs=181.1

Q ss_pred             cCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--CCCeEEEEecCCcEEEEEEcCCccccccccccCCC
Q 022184           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP  108 (301)
Q Consensus        31 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  108 (301)
                      .++|+.++|+....+..     .....+|.||.++|..++|..  .|..||+++.||.|.||.-++++-.     +....
T Consensus        29 csSD~tVkIf~v~~n~~-----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~-----k~~e~   98 (299)
T KOG1332|consen   29 CSSDGTVKIFEVRNNGQ-----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT-----KAYEH   98 (299)
T ss_pred             ecCCccEEEEEEcCCCC-----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh-----hhhhh
Confidence            35899999999988774     233567999999999999966  8999999999999999998877431     11233


Q ss_pred             CCCCCCeeEEEEeeC--CCEEEEeecCCeEEEEeCCCc-c--eecccccCCccEEEEEecCC---C-----------cEE
Q 022184          109 LQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSL-R--IILDEPKAHKSVLDMDFSLD---S-----------EFL  169 (301)
Q Consensus       109 ~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~-~--~~~~~~~~~~~i~~~~~~~~---~-----------~~l  169 (301)
                      ..|...|++++|.|.  |-.|+.++.||.|.|++.+.. .  .......|.-.|++++|.|-   |           +.|
T Consensus        99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl  178 (299)
T KOG1332|consen   99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL  178 (299)
T ss_pred             hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence            347889999999994  667899999999999988654 1  22334567778999999984   4           569


Q ss_pred             EEEeCCCcEEEEeCCCCceE--EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE---eeeeeccC
Q 022184          170 ATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLR  244 (301)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~  244 (301)
                      ++|+.|..|+||+...++-.  ..+..| ...|+.++|.|.-.. -..++++++.||++.||..+....   ...++...
T Consensus       179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H-~dwVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~  256 (299)
T KOG1332|consen  179 VSGGCDNLVKIWKFDSDSWKLERTLEGH-KDWVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP  256 (299)
T ss_pred             eccCCccceeeeecCCcchhhhhhhhhc-chhhhhhhhccccCC-CceeeEEecCCCcEEEEEecCccCcccccccccCC
Confidence            99999999999999876322  234444 557999999998654 234579999999999998763211   12234456


Q ss_pred             CCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          245 KPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      ..+..+.||+.|+.|++++.|+.|.+|.-.
T Consensus       257 ~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  257 DVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            789999999999999999999999999865

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5.4e-26  Score=168.70  Aligned_cols=228  Identities=15%  Similarity=0.217  Sum_probs=182.5

Q ss_pred             cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec--CCe
Q 022184           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH  135 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~  135 (301)
                      .+..-.+.|+++.|+++|.++++++.|.+++|||..++.....+..       ++-.+..++|....+.++.++.  |.+
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-------kkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-------KKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-------ccccccEEEEecCCceEEEccCCCCCc
Confidence            3445578899999999999999999999999999998876333322       3346778888877777777765  889


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      |+..++.+.+.++-+.+|...|.+++.+|-+..+++++.|++|++||+|..++...+....   -..++|.|.|-.    
T Consensus        82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~AfDp~GLi----  154 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIAAFDPEGLI----  154 (311)
T ss_pred             eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---CcceeECCCCcE----
Confidence            9999999999999999999999999999998999999999999999999888877775432   346789999985    


Q ss_pred             EEEEeCCcceEEEEEccCce--Eeeeee---ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccccc--C
Q 022184          216 CTVQRGDKALLAVYDISTWN--KIGHKR---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL--G  288 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~--~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~  288 (301)
                       ++.+.....|++||++...  +...+.   ......+.+.|||||++|+.++..+.+++.|.-+|.....+. .+.  .
T Consensus       155 -fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~  232 (311)
T KOG1446|consen  155 -FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-GYPNAG  232 (311)
T ss_pred             -EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-eccCCC
Confidence             4555555599999998752  222332   234678899999999999999999999999999998777663 221  1


Q ss_pred             ccEEEEEEccCCC
Q 022184          289 TSIALVEFCPTQR  301 (301)
Q Consensus       289 ~~v~~~~~spdg~  301 (301)
                      ..--+..|+|||+
T Consensus       233 ~~~~~a~ftPds~  245 (311)
T KOG1446|consen  233 NLPLSATFTPDSK  245 (311)
T ss_pred             CcceeEEECCCCc
Confidence            1235788999986

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=3.4e-26  Score=189.28  Aligned_cols=179  Identities=16%  Similarity=0.125  Sum_probs=160.1

Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc---ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  189 (301)
                      ..+.+++.++-|++.+.|+..|.|-+|++.+|-....+   +.|.++|++++...-++.+++++.+|.+++||......+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            56788999999999999999999999999998876666   478889999999998999999999999999999998887


Q ss_pred             EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEE
Q 022184          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (301)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  269 (301)
                      ..+....  .+..+..+.....     ++.+.+|-.|.++|..+.+.++.+.+|.+.|+.++|||||++|++++.|++|+
T Consensus       529 ~~l~l~~--~~~~iv~hr~s~l-----~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr  601 (910)
T KOG1539|consen  529 KSLRLGS--SITGIVYHRVSDL-----LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR  601 (910)
T ss_pred             eeeccCC--Ccceeeeeehhhh-----hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence            7776544  4778888877775     57788899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       270 i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +||+.++.++..+..   ..++.++.|||+|.
T Consensus       602 ~wDlpt~~lID~~~v---d~~~~sls~SPngD  630 (910)
T KOG1539|consen  602 TWDLPTGTLIDGLLV---DSPCTSLSFSPNGD  630 (910)
T ss_pred             EEeccCcceeeeEec---CCcceeeEECCCCC
Confidence            999999999987632   68999999999984

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=7.3e-27  Score=194.74  Aligned_cols=240  Identities=13%  Similarity=0.165  Sum_probs=197.6

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ..+.|.++++..-   ..+++.|.      .|.++++|+....        .....+.+|.+.|.++...  ..++++|+
T Consensus       248 H~g~V~~l~~~~~---~~~lvsgS------~D~t~rvWd~~sg--------~C~~~l~gh~stv~~~~~~--~~~~~sgs  308 (537)
T KOG0274|consen  248 HFGGVWGLAFPSG---GDKLVSGS------TDKTERVWDCSTG--------ECTHSLQGHTSSVRCLTID--PFLLVSGS  308 (537)
T ss_pred             CCCCceeEEEecC---CCEEEEEe------cCCcEEeEecCCC--------cEEEEecCCCceEEEEEcc--CceEeecc
Confidence            3567888888742   44777765      6778899996433        2356788999999999874  45788889


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      .|.+|++|+++++..        +..+. |.++|+++..+  +.++++|+.|++|++||..+++.+..+.+|...|.++.
T Consensus       309 ~D~tVkVW~v~n~~~--------l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~  378 (537)
T KOG0274|consen  309 RDNTVKVWDVTNGAC--------LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLI  378 (537)
T ss_pred             CCceEEEEeccCcce--------EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEE
Confidence            999999999997765        33333 88999999997  78999999999999999999999999999999999998


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      +.+. ..+++|+.|++|++||+++. +++..+..|.. .+..+.  ..++.     +.+++.|+.|++||..+++++..+
T Consensus       379 ~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-~v~~l~--~~~~~-----Lvs~~aD~~Ik~WD~~~~~~~~~~  449 (537)
T KOG0274|consen  379 VDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS-LVSSLL--LRDNF-----LVSSSADGTIKLWDAEEGECLRTL  449 (537)
T ss_pred             ecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc-cccccc--cccce-----eEeccccccEEEeecccCceeeee
Confidence            8765 89999999999999999999 88888886654 354333  34444     789999999999999999999888


Q ss_pred             ec-cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          241 RL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       241 ~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      .. +...++.+++.  ...+++++.|+.+.+||+++++..+.+
T Consensus       450 ~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  450 EGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            88 56788888776  467899999999999999999877754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1e-25  Score=182.49  Aligned_cols=263  Identities=14%  Similarity=0.184  Sum_probs=208.3

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccccc-CCcceEEEECCCCCeEEEEec
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      .+|+|+|++.+   .+.+|+|.      .++.|+||....+       .....++.++ ...|.+++|++ +.+|.+.+.
T Consensus        26 s~I~slA~s~k---S~~lAvsR------t~g~IEiwN~~~~-------w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~   88 (691)
T KOG2048|consen   26 SEIVSLAYSHK---SNQLAVSR------TDGNIEIWNLSNN-------WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGL   88 (691)
T ss_pred             cceEEEEEecc---CCceeeec------cCCcEEEEccCCC-------ceeeEEEecCCCCceeeEEEcc-CCeEEeecC
Confidence            57899999977   45677766      7788899988663       2234445555 56799999995 556888889


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec--ccccCCccEEEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--DEPKAHKSVLDMD  161 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~i~~~~  161 (301)
                      +|.|.-||+.+.+......       ...+.|.+++.+|.+..+++|++||.+..++...++...  .+....+.+.+++
T Consensus        89 sg~i~EwDl~~lk~~~~~d-------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls  161 (691)
T KOG2048|consen   89 SGSITEWDLHTLKQKYNID-------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS  161 (691)
T ss_pred             CceEEEEecccCceeEEec-------CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence            9999999999887633221       234789999999999999999999988888877766543  2344457999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-------cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  234 (301)
                      |+|++..+++|+.||.|++||...+..+.....       ....-|+++.|-.++.      ++++...|.|.+||...+
T Consensus       162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t------I~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  162 WNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST------IASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             ecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc------EEEecCCceEEEEcccCc
Confidence            999999999999999999999999887763321       1223478888888887      699999999999999999


Q ss_pred             eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee---eccccccccCccEEEEEEcc
Q 022184          235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI---NHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~---~~~~~~~~~~~~v~~~~~sp  298 (301)
                      ..+..+..|...|.+++.++++.++++++.|+.|.-|...+.+.   .......| ...|.+++..+
T Consensus       236 TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h-~hdvrs~av~~  301 (691)
T KOG2048|consen  236 TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH-AHDVRSMAVIE  301 (691)
T ss_pred             chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC-cccceeeeeec
Confidence            99999999999999999999999999999999999998877643   22222456 66788777654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.9e-25  Score=157.20  Aligned_cols=245  Identities=15%  Similarity=0.170  Sum_probs=190.9

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC----CCCeEE
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP----SGDDFV   79 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~   79 (301)
                      .+.|+|.+|+|.   +.++|+|.      .|.++++..|+.++....   -...++.-|.+.|..++|-.    .+..|+
T Consensus        89 kgsiyc~~ws~~---geliatgs------ndk~ik~l~fn~dt~~~~---g~dle~nmhdgtirdl~fld~~~s~~~il~  156 (350)
T KOG0641|consen   89 KGSIYCTAWSPC---GELIATGS------NDKTIKVLPFNADTCNAT---GHDLEFNMHDGTIRDLAFLDDPESGGAILA  156 (350)
T ss_pred             CccEEEEEecCc---cCeEEecC------CCceEEEEeccccccccc---CcceeeeecCCceeeeEEecCCCcCceEEE
Confidence            578999999998   67999977      667779999987765542   23456778999999999954    344666


Q ss_pred             EEec-CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc--C---
Q 022184           80 CSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK--A---  153 (301)
Q Consensus        80 ~~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~---  153 (301)
                      +++. |..|++-|...++..       .....|.+.|.++ ++-++-++++|+.|.+|++||++-...+..+..  |   
T Consensus       157 s~gagdc~iy~tdc~~g~~~-------~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g  228 (350)
T KOG0641|consen  157 SAGAGDCKIYITDCGRGQGF-------HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG  228 (350)
T ss_pred             ecCCCcceEEEeecCCCCcc-------eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC
Confidence            6543 455666666555541       1222466667654 455788999999999999999987766554422  1   


Q ss_pred             --CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184          154 --HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (301)
Q Consensus       154 --~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  231 (301)
                        .+.|.+++..|.|++|++|-.|....+||++.+..++.+..|. ..|+++.|+|...+     +++++.|..|++-|+
T Consensus       229 lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs-adir~vrfsp~a~y-----llt~syd~~ikltdl  302 (350)
T KOG0641|consen  229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS-ADIRCVRFSPGAHY-----LLTCSYDMKIKLTDL  302 (350)
T ss_pred             cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc-cceeEEEeCCCceE-----EEEecccceEEEeec
Confidence              1469999999999999999999999999999999999998665 46999999999887     789999999999998


Q ss_pred             cCc----eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          232 STW----NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       232 ~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      ...    -++.....|+..+-.+.|+|..-.+++.+.|.++.+|-+.
T Consensus       303 qgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  303 QGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            642    1233456678888889999999889999999999999764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3e-27  Score=190.51  Aligned_cols=218  Identities=17%  Similarity=0.209  Sum_probs=181.8

Q ss_pred             CCCCeEEEEecCCcEEEEEEcCCccccccccccCCC-CCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc--ceecc
Q 022184           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILD  149 (301)
Q Consensus        73 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~--~~~~~  149 (301)
                      |.+++|++|++||.|++|++..........  .... ..|...|+.+....+++.|++++.|-+|++|+...+  -+...
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st  112 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTP--YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST  112 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccc--hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh
Confidence            467789999999999999997654321111  1122 236688999999999999999999999999998776  45566


Q ss_pred             cccCCccEEEEEe-cCCCcEEEEEeCCCcEEEEeCCCCce--EEE--------EeecCCCCeeEEEEccCCCcceEEEEE
Q 022184          150 EPKAHKSVLDMDF-SLDSEFLATTSTDGSARIWKTEDGVA--WTF--------LTRNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       150 ~~~~~~~i~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      +..|.+.|.|+++ .++...+|+|+-|+.|.+||+.++..  +.+        +...+...+++++.++.|..     ++
T Consensus       113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~-----iv  187 (735)
T KOG0308|consen  113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI-----IV  187 (735)
T ss_pred             hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE-----EE
Confidence            7788899999999 78888999999999999999997732  222        22134457999999999965     78


Q ss_pred             EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      +|+.++.|++||.++.+.+..+.+|...|..+-.++||+.+++++.||+|++||+...+++..+ ..| ...|+++.-+|
T Consensus       188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~-~vH-~e~VWaL~~~~  265 (735)
T KOG0308|consen  188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY-IVH-KEGVWALQSSP  265 (735)
T ss_pred             ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE-Eec-cCceEEEeeCC
Confidence            9999999999999999999999999999999999999999999999999999999999999886 678 77799998876


Q ss_pred             C
Q 022184          299 T  299 (301)
Q Consensus       299 d  299 (301)
                      +
T Consensus       266 s  266 (735)
T KOG0308|consen  266 S  266 (735)
T ss_pred             C
Confidence            4

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.95  E-value=2.4e-26  Score=180.20  Aligned_cols=266  Identities=17%  Similarity=0.234  Sum_probs=205.6

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      ++.+.|...    +.++++..    +.|..+++|.-+.....+   |... ...  .+.-.|++......++++++..+.
T Consensus        37 ~~s~~w~~~----n~lvvas~----~gdk~~~~~~K~g~~~~V---p~~~-k~~--gd~~~Cv~~~s~S~y~~sgG~~~~  102 (673)
T KOG4378|consen   37 DFSFNWQRR----NFLVVASM----AGDKVMRIKEKDGKTPEV---PRVR-KLT--GDNAFCVACASQSLYEISGGQSGC  102 (673)
T ss_pred             ceeeecccc----ceEEEeec----CCceeEEEecccCCCCcc---ceee-ccc--cchHHHHhhhhcceeeeccCcCce
Confidence            788899855    22433221    356667887766553222   2211 122  224455555555689999999999


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC-ccEEEEEecCC
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLD  165 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~  165 (301)
                      |+|||++....       ......|...|+++.++....+||+++..|.|.|..+.++.....+.... ..+.-+.|+|.
T Consensus       103 Vkiwdl~~kl~-------hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s  175 (673)
T KOG4378|consen  103 VKIWDLRAKLI-------HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS  175 (673)
T ss_pred             eeehhhHHHHH-------hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc
Confidence            99999985443       12233577899999999999999999999999999998887765554443 35678999997


Q ss_pred             Cc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC
Q 022184          166 SE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (301)
Q Consensus       166 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  244 (301)
                      .+ +|.+++.+|.|.+||+....++..+...|..+...++|+|....+    +++.+.|..|.+||.+..+....+ ...
T Consensus       176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l----~vsVG~Dkki~~yD~~s~~s~~~l-~y~  250 (673)
T KOG4378|consen  176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL----LVSVGYDKKINIYDIRSQASTDRL-TYS  250 (673)
T ss_pred             cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce----EEEecccceEEEeeccccccccee-eec
Confidence            77 567788999999999999998888887788899999999998864    688899999999999976655444 346


Q ss_pred             CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      .+.+.++|+++|.+|++|+..|.|..||++..+........| ...|++++|-|.
T Consensus       251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sVt~vafq~s  304 (673)
T KOG4378|consen  251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASVTRVAFQPS  304 (673)
T ss_pred             CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccceeEEEeeec
Confidence            789999999999999999999999999999877665555788 888999999764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=1.3e-26  Score=182.03  Aligned_cols=229  Identities=14%  Similarity=0.219  Sum_probs=189.1

Q ss_pred             cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (301)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  139 (301)
                      -.|..-|.++.++...+++.+|+..+ |+|||+.....  +.....+..+.....++++.+.|||+.|++|++-.++.||
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGkgc-VKVWdis~pg~--k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW  492 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISQPGN--KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW  492 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCCCe-EEEeeccCCCC--CCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence            45788899999999999999987655 99999976532  2222234444456789999999999999999999999999


Q ss_pred             eCCCcceecc--cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE
Q 022184          140 HWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       140 d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (301)
                      |+.......+  +....-..+.++.+||.+..+++..||.|.|||+++...++.+++|.++ +.|+..++||..     +
T Consensus       493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG-ascIdis~dGtk-----l  566 (705)
T KOG0639|consen  493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISKDGTK-----L  566 (705)
T ss_pred             eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCC-ceeEEecCCCce-----e
Confidence            9976554333  2222346788999999999999999999999999999999999988775 899999999998     8


Q ss_pred             EEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEc
Q 022184          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~s  297 (301)
                      .+++-|.+|+.||++++..+.... ....|.++..+|++.+|++|-.++.+.+......+....  ..| .+.|.++.|.
T Consensus       567 WTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql--hlh-eScVLSlKFa  642 (705)
T KOG0639|consen  567 WTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL--HLH-ESCVLSLKFA  642 (705)
T ss_pred             ecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceee--ccc-ccEEEEEEec
Confidence            999999999999999987664332 346799999999999999999999999998876665544  557 8999999999


Q ss_pred             cCCC
Q 022184          298 PTQR  301 (301)
Q Consensus       298 pdg~  301 (301)
                      +-||
T Consensus       643 ~cGk  646 (705)
T KOG0639|consen  643 YCGK  646 (705)
T ss_pred             ccCc
Confidence            9886

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.7e-26  Score=165.58  Aligned_cols=238  Identities=13%  Similarity=0.115  Sum_probs=181.5

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeE
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHL  136 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i  136 (301)
                      -..|.+.|..+...-.|++||+++.|++|+|+.+++..... +   ......|.++|..++|..  -|.+|++++.||.|
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~-l---l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV   82 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSK-L---LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV   82 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCce-e---eeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence            46799999999998899999999999999999998765411 1   123346889999999966  79999999999999


Q ss_pred             EEEeCCCcce--ecccccCCccEEEEEecCC--CcEEEEEeCCCcEEEEeCCCC--ceEEEEeecCCCCeeEEEEccC--
Q 022184          137 RIMHWPSLRI--ILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKD--  208 (301)
Q Consensus       137 ~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~--  208 (301)
                      .||.-.+++-  ......|...|++++|.|.  |-.|++++.||.|.|.+.+..  -....+...|...+++++|.|.  
T Consensus        83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence            9999877643  3345567789999999995  458999999999999998764  2223333344556999999986  


Q ss_pred             -CCc------ceEEEEEEeCCcceEEEEEccCce--EeeeeeccCCCcEEEEEcCCC----CEEEEeeCCCcEEEEeCCC
Q 022184          209 -GTK------PFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDG----KYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       209 -~~~------~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~i~~~~~  275 (301)
                       |..      .-+.-+++++.|..|+||+..+++  ....+..|...|+.++|.|.-    .+||+++.||++.||..+.
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence             310      001126899999999999988753  334578899999999999963    5899999999999998763


Q ss_pred             c--eeeccccccccCccEEEEEEccCCC
Q 022184          276 M--EINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       276 ~--~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .  +....+.... ...+..++||+.|.
T Consensus       243 e~e~wk~tll~~f-~~~~w~vSWS~sGn  269 (299)
T KOG1332|consen  243 EYEPWKKTLLEEF-PDVVWRVSWSLSGN  269 (299)
T ss_pred             ccCcccccccccC-CcceEEEEEecccc
Confidence            2  1112222223 67899999998874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=2e-24  Score=172.72  Aligned_cols=258  Identities=16%  Similarity=0.164  Sum_probs=180.3

Q ss_pred             eeEEEeeeecCCCccEE-EecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE-ec
Q 022184            6 TVTCGSWIKRPENVNLV-VLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT   83 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~   83 (301)
                      .+.+++|+|+   +..+ +++.      .++.+.+|+....  ..      ...+..+. .+..++|+|+++.++++ ..
T Consensus        32 ~~~~l~~~~d---g~~l~~~~~------~~~~v~~~d~~~~--~~------~~~~~~~~-~~~~~~~~~~g~~l~~~~~~   93 (300)
T TIGR03866        32 RPRGITLSKD---GKLLYVCAS------DSDTIQVIDLATG--EV------IGTLPSGP-DPELFALHPNGKILYIANED   93 (300)
T ss_pred             CCCceEECCC---CCEEEEEEC------CCCeEEEEECCCC--cE------EEeccCCC-CccEEEECCCCCEEEEEcCC
Confidence            3567889876   3333 4433      4566677766432  21      11222232 35678999999977655 56


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC-eEEEEeCCCcceecccccCCccEEEEEe
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      ++.+++||+.+.+....        +.....+.+++|+|++++++++..++ .+.+||.++++....... ...+..++|
T Consensus        94 ~~~l~~~d~~~~~~~~~--------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~  164 (300)
T TIGR03866        94 DNLVTVIDIETRKVLAE--------IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEF  164 (300)
T ss_pred             CCeEEEEECCCCeEEeE--------eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEE
Confidence            89999999987543211        11223467899999999999888765 567789887766544332 234578999


Q ss_pred             cCCCcEEEEE-eCCCcEEEEeCCCCceEEEEeecC------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184          163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNS------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       163 ~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  235 (301)
                      +|++++|+++ ..++.|++||+++++.+..+..+.      ......++|+|+++.++    ++.+.++.+.+||+++++
T Consensus       165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~----~~~~~~~~i~v~d~~~~~  240 (300)
T TIGR03866       165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF----VALGPANRVAVVDAKTYE  240 (300)
T ss_pred             CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE----EEcCCCCeEEEEECCCCc
Confidence            9999987554 468999999999988777664321      11235688999999732    333456689999999887


Q ss_pred             EeeeeeccCCCcEEEEEcCCCCEEEEe-eCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          236 KIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      .+.... +...+.+++|+|+|++|+++ ..++.|.+||+.+++.+..+..   ....++++|+|
T Consensus       241 ~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~  300 (300)
T TIGR03866       241 VLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV---GRLPWGVVVRP  300 (300)
T ss_pred             EEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc---ccccceeEeCC
Confidence            765443 34578999999999999886 4689999999999998887742   34568998886

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=2.8e-25  Score=172.37  Aligned_cols=273  Identities=18%  Similarity=0.194  Sum_probs=197.7

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~   82 (301)
                      .++|+|++|+|.. ..+++|+|..      .|.|-+|+++.+.....    -...+..|..+|.++.|+| +...+++.+
T Consensus       186 ~~Rit~l~fHPt~-~~~lva~GdK------~G~VG~Wn~~~~~~d~d----~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  186 DRRITSLAFHPTE-NRKLVAVGDK------GGQVGLWNFGTQEKDKD----GVYLFTPHSGPVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             ccceEEEEecccC-cceEEEEccC------CCcEEEEecCCCCCccC----ceEEeccCCccccceEecCCChhheeeec
Confidence            4789999999774 2478888774      45568999964332221    1345788999999999999 455899999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce-ecccccCCccEEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMD  161 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~  161 (301)
                      .||+|++-|+++......+..     ......+..+.|+.+...++.+..=|...+||+++... ...+.-|...|.+++
T Consensus       255 yDGtiR~~D~~~~i~e~v~s~-----~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~  329 (498)
T KOG4328|consen  255 YDGTIRLQDFEGNISEEVLSL-----DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA  329 (498)
T ss_pred             cCceeeeeeecchhhHHHhhc-----CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence            999999999987754222211     12335567888888877888888778999999988665 444556777999999


Q ss_pred             ecCCC-cEEEEEeCCCcEEEEeCCCCceEEE---EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc----C
Q 022184          162 FSLDS-EFLATTSTDGSARIWKTEDGVAWTF---LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS----T  233 (301)
Q Consensus       162 ~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----~  233 (301)
                      ++|-. .+|+|++.|++.+|||+|.-.....   ....|...|.+..|||++..     +++.+.|..|+|||..    .
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-----l~TT~~D~~IRv~dss~~sa~  404 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-----LLTTCQDNEIRVFDSSCISAK  404 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-----eEeeccCCceEEeeccccccc
Confidence            99954 5899999999999999986433221   22345567999999999987     7889999999999983    2


Q ss_pred             ceEeeeeeccC----C--CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE-EEEccC
Q 022184          234 WNKIGHKRLLR----K--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPT  299 (301)
Q Consensus       234 ~~~~~~~~~~~----~--~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~-~~~spd  299 (301)
                      ..+...+ .|+    .  ......|.|+..++++|..-..|-|||-..++.+..+.... ...|.+ ..|+|-
T Consensus       405 ~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-~~tI~~vn~~HP~  475 (498)
T KOG4328|consen  405 DEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-SSTIPSVNEFHPM  475 (498)
T ss_pred             CCcccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-ccccccceeeccc
Confidence            2222222 222    1  23346899999999999999999999999988666543322 323333 356653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=1.1e-25  Score=165.81  Aligned_cols=212  Identities=16%  Similarity=0.176  Sum_probs=172.4

Q ss_pred             cccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCcc--cccccc------ccCCCCCCCCCeeEEEEee-CCCEEEE
Q 022184           60 DESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGAT--DINLLA------KKMPPLQDAGPQKCLSFSV-DGSRFAA  129 (301)
Q Consensus        60 ~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~--~~~~~~------~~~~~~~~~~~v~~~~~s~-~~~~l~~  129 (301)
                      ..|.+.|+++...+ .|+++++|+.||.|.+||++....  ...+..      .......|.-.|..+.|-| |..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            56889999999988 789999999999999999986542  111111      1122334667899999999 7778999


Q ss_pred             eecCCeEEEEeCCCcceecccccCCccEEEEEecCC---CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEc
Q 022184          130 GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS  206 (301)
Q Consensus       130 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  206 (301)
                      ++.|.+++|||.++.+....+ .-.+.|++-+|+|-   ..++|+|..|-.|++-|+.+|...+.+.+|.+ .|.++.|+
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Ws  197 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWS  197 (397)
T ss_pred             ccccceEEEeecccceeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEec
Confidence            999999999999988876555 34568888889883   44788999999999999999999999998866 59999999


Q ss_pred             cCCCcceEEEEEEeCCcceEEEEEccCc-eEe--------------eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184          207 KDGTKPFLFCTVQRGDKALLAVYDISTW-NKI--------------GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (301)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~--------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~  271 (301)
                      |...++    +++++.||.|++||++.. .+.              +.-..|.+.+..++|+.++.++++.+.|.++++|
T Consensus       198 p~~e~v----LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w  273 (397)
T KOG4283|consen  198 PSSEWV----LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW  273 (397)
T ss_pred             cCceeE----EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence            999873    799999999999999753 121              1233456789999999999999999999999999


Q ss_pred             eCCCce
Q 022184          272 DVKKME  277 (301)
Q Consensus       272 ~~~~~~  277 (301)
                      +..+|+
T Consensus       274 n~~~G~  279 (397)
T KOG4283|consen  274 NMESGR  279 (397)
T ss_pred             ecccCc
Confidence            998775

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.9e-24  Score=169.82  Aligned_cols=273  Identities=16%  Similarity=0.233  Sum_probs=190.4

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|+|++|++..+...+.++-.     +.+..+.+|+|......        ......++.|....|+|.+..++....
T Consensus       154 ~~GV~~vaFsk~~~G~~l~~vD~-----s~~h~lSVWdWqk~~~~--------~~vk~sne~v~~a~FHPtd~nliit~G  220 (626)
T KOG2106|consen  154 DRGVTCVAFSKINGGSLLCAVDD-----SNPHMLSVWDWQKKAKL--------GPVKTSNEVVFLATFHPTDPNLIITCG  220 (626)
T ss_pred             cccceeeeecccCCCceEEEecC-----CCccccchhhchhhhcc--------CcceeccceEEEEEeccCCCcEEEEeC
Confidence            35689999998866555666532     46677889999765421        123344778999999997776666667


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      .+.+.+|+.+++....+.-.-   .......|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++..
T Consensus       221 k~H~~Fw~~~~~~l~k~~~~f---ek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l  296 (626)
T KOG2106|consen  221 KGHLYFWTLRGGSLVKRQGIF---EKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCML  296 (626)
T ss_pred             CceEEEEEccCCceEEEeecc---ccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEe
Confidence            788999999877653332111   111236799999999986 7899999999999998877777777888999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCc-----------eEEEEe----------------------------ecCCCCeeEEE
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGV-----------AWTFLT----------------------------RNSDEKIELCR  204 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~----------------------------~~~~~~v~~~~  204 (301)
                      .+|.+|- |+.|..|..||-.-.+           .++.+.                            ..+......++
T Consensus       297 r~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla  375 (626)
T KOG2106|consen  297 RDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLA  375 (626)
T ss_pred             cCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEE
Confidence            9987554 9999999999832110           000000                            01111244455


Q ss_pred             EccCCCcceEEEEEEeCCcceEEEEE--------------------------------------ccCceEeeeeeccCCC
Q 022184          205 FSKDGTKPFLFCTVQRGDKALLAVYD--------------------------------------ISTWNKIGHKRLLRKP  246 (301)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~i~~~d--------------------------------------~~~~~~~~~~~~~~~~  246 (301)
                      .+|+...     +++++.|+.+++|+                                      .++...+. +...+.+
T Consensus       376 ~hps~~q-----~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~  449 (626)
T KOG2106|consen  376 THPSKNQ-----LLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVT-IHTDNEQ  449 (626)
T ss_pred             cCCChhh-----eeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEE-EEecCCc
Confidence            5555554     45666666666665                                      33322232 2333778


Q ss_pred             cEEEEEcCCCCEEEEeeCCCcEEEEeCCCc-eeeccccccccCccEEEEEEccCCC
Q 022184          247 ASVLSISLDGKYLAMGSKDGDICVVDVKKM-EINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       247 v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++.++|+|+|.+||.|+.|+.|+||.+... .........+ .++|+.+.||+|++
T Consensus       450 ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~-gs~ithLDwS~Ds~  504 (626)
T KOG2106|consen  450 LSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS-GSPITHLDWSSDSQ  504 (626)
T ss_pred             eEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec-CceeEEeeecCCCc
Confidence            999999999999999999999999999754 4444444455 78999999999985

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=173.54  Aligned_cols=255  Identities=13%  Similarity=0.129  Sum_probs=190.6

Q ss_pred             EEEeeeecC----CCccEEEecCCccccCCcCceeEeeeCCCcceeeeC-------------CceeccccccCCcceEEE
Q 022184            8 TCGSWIKRP----ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS-------------PLVTYVFDESEGDPMTIA   70 (301)
Q Consensus         8 ~~~~w~~~~----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~~h~~~v~~~~   70 (301)
                      .|++|...+    +.++++|+|+      .+..|.||+++-....++..             ........+|++.|.+++
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGt------mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls  250 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGT------MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS  250 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEec------cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence            588897653    2368999988      66678999998655433210             011122457999999999


Q ss_pred             ECCCCC-eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceec
Q 022184           71 VNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIIL  148 (301)
Q Consensus        71 ~~~~~~-~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~  148 (301)
                      |+..-+ .||+|+.|.+|++||+.+++....+       ..|...|.++.|+| ...+|++|+.|++|.+.|.+......
T Consensus       251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~  323 (463)
T KOG0270|consen  251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG  323 (463)
T ss_pred             hccccceeEEecCCCceEEEEEcCCCCcceeh-------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC
Confidence            988544 7889999999999999999873222       13678999999999 67889999999999999998533333


Q ss_pred             ccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceE
Q 022184          149 DEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (301)
Q Consensus       149 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i  226 (301)
                      ......+.|..++|+|... .++++..||+++-+|+|.. +++.+++.|.. +|.++++++.-..+    +++++.++.|
T Consensus       324 ~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~----l~t~s~d~~V  398 (463)
T KOG0270|consen  324 KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGL----LSTASTDKVV  398 (463)
T ss_pred             ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcc----eeeccccceE
Confidence            3334457899999999665 6777889999999999976 78888887654 79999999987763    6889999999


Q ss_pred             EEEEccCceEeeeeecc---CCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeecc
Q 022184          227 AVYDISTWNKIGHKRLL---RKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHW  281 (301)
Q Consensus       227 ~~~d~~~~~~~~~~~~~---~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~  281 (301)
                      ++|++....+. ....|   -+...|.++.|+- -.++.|+..+.++|||+.+...++.
T Consensus       399 klw~~~~~~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k  456 (463)
T KOG0270|consen  399 KLWKFDVDSPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK  456 (463)
T ss_pred             EEEeecCCCCc-ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence            99998754431 11111   1335667777764 4677788888899999988776554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.7e-24  Score=160.16  Aligned_cols=228  Identities=12%  Similarity=0.168  Sum_probs=180.2

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      .+.|+++|+|.++    ..+++|+      .|+.++.++++....         ..+..|..+|.++.+++....+++|+
T Consensus        53 ~~~plL~c~F~d~----~~~~~G~------~dg~vr~~Dln~~~~---------~~igth~~~i~ci~~~~~~~~vIsgs  113 (323)
T KOG1036|consen   53 HGAPLLDCAFADE----STIVTGG------LDGQVRRYDLNTGNE---------DQIGTHDEGIRCIEYSYEVGCVISGS  113 (323)
T ss_pred             cCCceeeeeccCC----ceEEEec------cCceEEEEEecCCcc---------eeeccCCCceEEEEeeccCCeEEEcc
Confidence            5789999999975    3566665      888889988876553         33678999999999999888999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC--CccEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSVLDM  160 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~i~~~  160 (301)
                      .|++|++||......        ...+.....|.++..  .++.|++|+.+..+.+||+++.....+....  .-.+.++
T Consensus       114 WD~~ik~wD~R~~~~--------~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v  183 (323)
T KOG1036|consen  114 WDKTIKFWDPRNKVV--------VGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCV  183 (323)
T ss_pred             cCccEEEEecccccc--------ccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEE
Confidence            999999999986332        222223357777766  4778999999999999999987654432222  2378999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCC----ceEEEEeecC--------CCCeeEEEEccCCCcceEEEEEEeCCcceEEE
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDG----VAWTFLTRNS--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~  228 (301)
                      ++-|++.-++.++-||.|.+=.++..    +....++.|.        -.+|++++|+|-...     +++++.||.|.+
T Consensus       184 ~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t-----faTgGsDG~V~~  258 (323)
T KOG1036|consen  184 ALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT-----FATGGSDGIVNI  258 (323)
T ss_pred             EEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce-----EEecCCCceEEE
Confidence            99998888999999999887766654    3334444432        137899999998665     799999999999


Q ss_pred             EEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeC
Q 022184          229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK  264 (301)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  264 (301)
                      ||+.+.+.+..+......|..++|+.+|..||+++.
T Consensus       259 Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  259 WDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999888888877788999999999999999974

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=2.9e-25  Score=180.39  Aligned_cols=280  Identities=13%  Similarity=0.122  Sum_probs=206.7

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcce-----------------------eeeCCceecccccc
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-----------------------VYTSPLVTYVFDES   62 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-----------------------~~~~~~~~~~~~~h   62 (301)
                      -|..++|.....+..++|.++      .|..|+||.+...+..                       +.........+.||
T Consensus       193 WIrsl~f~~~~~~~~~laS~S------QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH  266 (764)
T KOG1063|consen  193 WIRSLAFARLGGDDLLLASSS------QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH  266 (764)
T ss_pred             hhhhhhhhccCCCcEEEEecC------CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence            356677775544345666544      6778899998654410                       00011122456799


Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc---------------------------------------------
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT---------------------------------------------   97 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~---------------------------------------------   97 (301)
                      ++.|.++.|+|.+..|++++.|.++.+|...+...                                             
T Consensus       267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~  346 (764)
T KOG1063|consen  267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK  346 (764)
T ss_pred             ccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc
Confidence            99999999999999999999999999999876532                                             


Q ss_pred             ccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc--------------------------------
Q 022184           98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--------------------------------  145 (301)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~--------------------------------  145 (301)
                      ...........-.|.+.|..++|+|.|.+|++.+.|.+-|+|-.-..+                                
T Consensus       347 d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA  426 (764)
T KOG1063|consen  347 DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA  426 (764)
T ss_pred             CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecc
Confidence            001111222334577899999999999999999988877776421000                                


Q ss_pred             --ee----------------------------------------------------------------------------
Q 022184          146 --II----------------------------------------------------------------------------  147 (301)
Q Consensus       146 --~~----------------------------------------------------------------------------  147 (301)
                        .+                                                                            
T Consensus       427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E  506 (764)
T KOG1063|consen  427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE  506 (764)
T ss_pred             cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence              00                                                                            


Q ss_pred             ------------cccccCCccEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC
Q 022184          148 ------------LDEPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (301)
Q Consensus       148 ------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (301)
                                  .++.+|.-.|++++.+|+++++|+++...     .|++|+..+-.....+..|. -.|+.++|||||+
T Consensus       507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs-LTVT~l~FSpdg~  585 (764)
T KOG1063|consen  507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS-LTVTRLAFSPDGR  585 (764)
T ss_pred             HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc-eEEEEEEECCCCc
Confidence                        13455667899999999999999998654     49999998888888787664 5699999999999


Q ss_pred             cceEEEEEEeCCcceEEEEEccCceE----eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeccc-c
Q 022184          211 KPFLFCTVQRGDKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM--EINHWS-K  283 (301)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~-~  283 (301)
                      +     +++.+.|+++.+|.......    ....+.|..-|..+.|+|+++++++++.|.+|++|.....  +.+..+ .
T Consensus       586 ~-----LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~  660 (764)
T KOG1063|consen  586 Y-----LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC  660 (764)
T ss_pred             E-----EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch
Confidence            8     79999999999998754322    2335678888999999999999999999999999999887  433331 1


Q ss_pred             ccccCccEEEEEEcc
Q 022184          284 RLHLGTSIALVEFCP  298 (301)
Q Consensus       284 ~~~~~~~v~~~~~sp  298 (301)
                      ..+ ..+|+.++|.|
T Consensus       661 ~~~-~~aVTAv~~~~  674 (764)
T KOG1063|consen  661 LKF-SLAVTAVAYLP  674 (764)
T ss_pred             hcc-CCceeeEEeec
Confidence            234 78899999876

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.3e-24  Score=159.54  Aligned_cols=254  Identities=11%  Similarity=0.141  Sum_probs=186.1

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--CCCeEEEEe
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCST   82 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~   82 (301)
                      .-|.|+.|...   ++-+|++.      +|.+++||+++.....+..    ....+.|.+.|..+.|.+  -|+.+|+++
T Consensus        14 DlihdVs~D~~---GRRmAtCS------sDq~vkI~d~~~~s~~W~~----Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS   80 (361)
T KOG2445|consen   14 DLIHDVSFDFY---GRRMATCS------SDQTVKIWDSTSDSGTWSC----TSSWRAHDGSIWRVVWAHPEFGQVVATCS   80 (361)
T ss_pred             ceeeeeeeccc---Cceeeecc------CCCcEEEEeccCCCCceEE----eeeEEecCCcEEEEEecCccccceEEEEe
Confidence            44899999866   55566544      7888999998776665533    445788999999999965  689999999


Q ss_pred             cCCcEEEEEEcCC--ccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCc------ceecccc-
Q 022184           83 TNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSL------RIILDEP-  151 (301)
Q Consensus        83 ~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~------~~~~~~~-  151 (301)
                      .|+++.||.-...  +.......+..........|+.+.|.|  -|-.+++++.||.++||+....      .....+. 
T Consensus        81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen   81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN  160 (361)
T ss_pred             cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence            9999999987422  222222222223334557899999999  5778999999999999986432      2222222 


Q ss_pred             ------cCCccEEEEEecCC---CcEEEEEeCC-----CcEEEEeCCCCc----eEEEEeecCCCCeeEEEEccCCCcce
Q 022184          152 ------KAHKSVLDMDFSLD---SEFLATTSTD-----GSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDGTKPF  213 (301)
Q Consensus       152 ------~~~~~i~~~~~~~~---~~~l~~~~~d-----~~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (301)
                            .+..+..|+.|+|.   ..+||.|+.+     +.++||......    .+..+. .+..+|+.++|.|+-...|
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCce
Confidence                  34457889999983   4578888765     478888765433    234455 4456899999999854422


Q ss_pred             EEEEEEeCCcceEEEEEccCc--------------------eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          214 LFCTVQRGDKALLAVYDISTW--------------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       214 ~~~~~~~~~~~~i~~~d~~~~--------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                       -.+++++.|| |+||.++..                    +.+..+..|++.|..+.|+-.|..|++.+.||.|++|..
T Consensus       240 -~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  240 -HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             -eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence             2368889999 999998731                    224556788899999999999999999999999999987


Q ss_pred             C
Q 022184          274 K  274 (301)
Q Consensus       274 ~  274 (301)
                      .
T Consensus       318 n  318 (361)
T KOG2445|consen  318 N  318 (361)
T ss_pred             h
Confidence            5

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.94  E-value=2.1e-24  Score=158.60  Aligned_cols=282  Identities=12%  Similarity=0.159  Sum_probs=207.2

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-----eE
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-----DF   78 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l   78 (301)
                      --+++++.|+..+...-.+|+|.-..  ...|.++|..++.....+...+.     -.|.-+++.+.|.|+..     +|
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~E--e~~Nkvqiv~ld~~s~e~~~~a~-----fd~~YP~tK~~wiPd~~g~~pdlL  116 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIE--EYNNKVQIVQLDEDSGELVEDAN-----FDHPYPVTKLMWIPDSKGVYPDLL  116 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeecc--ccCCeeEEEEEccCCCceeccCC-----CCCCCCccceEecCCccccCcchh
Confidence            35789999997766667888877433  25589999999877665533222     36889999999999763     45


Q ss_pred             EEEecCCcEEEEEEcCCcccccccc--ccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcc---eeccccc
Q 022184           79 VCSTTNGGCKLFEVYGGATDINLLA--KKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR---IILDEPK  152 (301)
Q Consensus        79 ~~~~~d~~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~  152 (301)
                      |++ . ..+++|.+...+.......  ......++..++++..|+. +.++|.+++-|-+..|||++++.   ...++..
T Consensus       117 ATs-~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA  194 (364)
T KOG0290|consen  117 ATS-S-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA  194 (364)
T ss_pred             hcc-c-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence            543 3 4499999975433222111  1112233567899999988 88899999999999999999863   3566788


Q ss_pred             CCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEee-cC-CCCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184          153 AHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (301)
Q Consensus       153 ~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (301)
                      |.++|..++|...+. .||+.+.||.+|+||+|..+....+.. +. ..+...++|++...+ +++  ..+-....|.+.
T Consensus       195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn-ymA--Tf~~dS~~V~iL  271 (364)
T KOG0290|consen  195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN-YMA--TFAMDSNKVVIL  271 (364)
T ss_pred             cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch-HHh--hhhcCCceEEEE
Confidence            999999999998654 899999999999999998765554432 22 456888999988776 332  233445579999


Q ss_pred             EccCc-eEeeeeeccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCCCcee-----eccccccccCccEEEEEEccC
Q 022184          230 DISTW-NKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEI-----NHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       230 d~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~~~~~-----~~~~~~~~~~~~v~~~~~spd  299 (301)
                      |++.. .++..+..|+..|+.++|.|. ...|++++.|..+.|||+.....     .-.... . .+.|+.+.|+|.
T Consensus       272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a-~~EVNqi~Ws~~  346 (364)
T KOG0290|consen  272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-A-GGEVNQIQWSSS  346 (364)
T ss_pred             EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-c-cceeeeeeeccc
Confidence            99864 467788999999999999996 57899999999999999975322     111112 2 578999999964

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=1.3e-23  Score=168.09  Aligned_cols=242  Identities=16%  Similarity=0.228  Sum_probs=172.1

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeE-EEEecCCcEEEEEEcCCccccccccccCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      .++.+.+|+.+...  .      ...+..+ ..+.+++|+|+++.+ ++++.++.|++||..+++....+        ..
T Consensus         9 ~d~~v~~~d~~t~~--~------~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--------~~   71 (300)
T TIGR03866         9 KDNTISVIDTATLE--V------TRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--------PS   71 (300)
T ss_pred             CCCEEEEEECCCCc--e------EEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec--------cC
Confidence            56677888764322  1      1223333 346789999999976 56677899999999876542211        11


Q ss_pred             CCCeeEEEEeeCCCEEEEe-ecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCceE
Q 022184          112 AGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-SARIWKTEDGVAW  189 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~  189 (301)
                      ...+..++|+|+++.++++ ..++.+++||+.+.+.+..+.. ...+.+++|+|+++++++++.++ .+.+||.++++..
T Consensus        72 ~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~  150 (300)
T TIGR03866        72 GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV  150 (300)
T ss_pred             CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence            2335678999999877655 5689999999988776655532 33568899999999999888765 5678899888776


Q ss_pred             EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-------CCcEEEEEcCCCCEEEEe
Q 022184          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------KPASVLSISLDGKYLAMG  262 (301)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~  262 (301)
                      ......  ..+..++|+|+++.+    ++++..++.|.+||+++++.+..+..+.       .....++|+|++++++++
T Consensus       151 ~~~~~~--~~~~~~~~s~dg~~l----~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~  224 (300)
T TIGR03866       151 DNVLVD--QRPRFAEFTADGKEL----WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA  224 (300)
T ss_pred             EEEEcC--CCccEEEECCCCCEE----EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence            655432  246789999999972    2445568999999999987765543221       123468899999986554


Q ss_pred             -eCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          263 -SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       263 -~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                       +.++.+.+||+++++......  + ...+.+++|+|+|+
T Consensus       225 ~~~~~~i~v~d~~~~~~~~~~~--~-~~~~~~~~~~~~g~  261 (300)
T TIGR03866       225 LGPANRVAVVDAKTYEVLDYLL--V-GQRVWQLAFTPDEK  261 (300)
T ss_pred             cCCCCeEEEEECCCCcEEEEEE--e-CCCcceEEECCCCC
Confidence             456789999999888776542  3 45789999999985

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=3.9e-24  Score=157.63  Aligned_cols=272  Identities=16%  Similarity=0.205  Sum_probs=195.0

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcce----eeeCC---ceeccccccCCcceEEEECC-CC
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS----VYTSP---LVTYVFDESEGDPMTIAVNP-SG   75 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~----~~~~~---~~~~~~~~h~~~v~~~~~~~-~~   75 (301)
                      ++.|.+++.-+.  .+++++.|+      .|+.+.+|++......    +....   .....-.+|.-.|.++.|-| |.
T Consensus        43 gGsvNsL~id~t--egrymlSGg------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   43 GGSVNSLQIDLT--EGRYMLSGG------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             CCccceeeeccc--cceEEeecC------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence            566776666533  367887776      6777899998654421    11111   12233467888999999999 55


Q ss_pred             CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee---CCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (301)
Q Consensus        76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  152 (301)
                      -.+.+++.|.++++||..+.+...        .+.-++.|+.-++||   ...++|+|..+-.|++.|+.+|.....+.+
T Consensus       115 GmFtssSFDhtlKVWDtnTlQ~a~--------~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG  186 (397)
T KOG4283|consen  115 GMFTSSSFDHTLKVWDTNTLQEAV--------DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG  186 (397)
T ss_pred             ceeecccccceEEEeecccceeeE--------EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence            688899999999999998876532        233457788888988   245788889999999999999999999999


Q ss_pred             CCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCC-ceEEEEee-------------cCCCCeeEEEEccCCCcceEEEE
Q 022184          153 AHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDG-VAWTFLTR-------------NSDEKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       153 ~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~  217 (301)
                      |.+.|.++.|+|..+ .|++|+.||.|++||++.. .+...+..             .+.+.+..++|+.++.+     +
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-----l  261 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-----L  261 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-----h
Confidence            999999999999877 5789999999999999864 33333322             23456899999999998     6


Q ss_pred             EEeCCcceEEEEEccCceEeeee---eccCC---CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccE
Q 022184          218 VQRGDKALLAVYDISTWNKIGHK---RLLRK---PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~~~~~~~---~~~~~---~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v  291 (301)
                      ++.+.|..+++|+..+++.....   ..++.   .-..+. +.+...++---.++.+.++++-+++.++.+ ..| ...|
T Consensus       262 ~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l-~~h-~k~i  338 (397)
T KOG4283|consen  262 ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL-STH-LKRI  338 (397)
T ss_pred             hhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEee-ecc-ccee
Confidence            88899999999999887642111   01111   111122 333333444445578888888888888776 567 6777


Q ss_pred             EEEEEccC
Q 022184          292 ALVEFCPT  299 (301)
Q Consensus       292 ~~~~~spd  299 (301)
                      .+.++.||
T Consensus       339 ~c~~~~~~  346 (397)
T KOG4283|consen  339 NCAAYRPD  346 (397)
T ss_pred             eEEeecCc
Confidence            77777765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.7e-24  Score=176.92  Aligned_cols=257  Identities=16%  Similarity=0.188  Sum_probs=189.5

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC-----------CCeEEEEecCCcEEEEEEcCCcccc--
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-----------GDDFVCSTTNGGCKLFEVYGGATDI--   99 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~l~~~~~d~~i~~w~~~~~~~~~--   99 (301)
                      .|..+.+|++....+     +-....+-.|...|..+.--|.           ...+++++.|++|++|+++......  
T Consensus       344 ndhSlYvWDvrD~~k-----vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vy  418 (1080)
T KOG1408|consen  344 NDHSLYVWDVRDVNK-----VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVY  418 (1080)
T ss_pred             cCceEEEEecccccc-----ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccccccee
Confidence            455667777654321     1112234456777766665441           1258899999999999998632100  


Q ss_pred             --ccccc--------------------------cCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc
Q 022184          100 --NLLAK--------------------------KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (301)
Q Consensus       100 --~~~~~--------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  151 (301)
                        ++...                          ........-.+++++.||+|++|++|..-|+++||++...+....+.
T Consensus       419 rRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e  498 (1080)
T KOG1408|consen  419 RRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME  498 (1080)
T ss_pred             ecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee
Confidence              00000                          00111223468999999999999999999999999999988888899


Q ss_pred             cCCccEEEEEecC---CCcEEEEEeCCCcEEEEeCCCCce-EEEEeecCC------------------------------
Q 022184          152 KAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSD------------------------------  197 (301)
Q Consensus       152 ~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~------------------------------  197 (301)
                      .|..+|.|+.|+.   ..++||+++.|.-|++||....-. +.++..|..                              
T Consensus       499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~  578 (1080)
T KOG1408|consen  499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVN  578 (1080)
T ss_pred             cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehh
Confidence            9999999999985   356899999999999999864321 222222111                              


Q ss_pred             ------------------CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc---CCCcEEEEEcCCC
Q 022184          198 ------------------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL---RKPASVLSISLDG  256 (301)
Q Consensus       198 ------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~v~~~~~s~~~  256 (301)
                                        ..++.++..|..++     +++++.|..|+|||+.+++..+.+++.   ++..-.+...|.|
T Consensus       579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~-----v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg  653 (1080)
T KOG1408|consen  579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL-----VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG  653 (1080)
T ss_pred             ccccCceeccccccccccceEEEeeeCCCcce-----EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc
Confidence                              12445555555554     688999999999999999998888764   4567788999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          257 KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       257 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .||++.+.|.++.++|..+++++... .+| ...|+.+.|++|-|
T Consensus       654 iY~atScsdktl~~~Df~sgEcvA~m-~GH-sE~VTG~kF~nDCk  696 (1080)
T KOG1408|consen  654 IYLATSCSDKTLCFVDFVSGECVAQM-TGH-SEAVTGVKFLNDCK  696 (1080)
T ss_pred             cEEEEeecCCceEEEEeccchhhhhh-cCc-chheeeeeecccch
Confidence            99999999999999999999999988 689 99999999999864

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.2e-26  Score=189.23  Aligned_cols=213  Identities=15%  Similarity=0.195  Sum_probs=182.6

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  112 (301)
                      .+..+.+|....        +.....+.+|..+|.++.|+++..+|++|+.+|+|++||++......       ....|.
T Consensus        48 ~~~k~~L~~i~k--------p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr-------tLtgh~  112 (825)
T KOG0267|consen   48 EDEKVNLWAIGK--------PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR-------TLTGHL  112 (825)
T ss_pred             CceeeccccccC--------CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh-------hhhccc
Confidence            444556665542        23344588999999999999999999999999999999999776522       233467


Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL  192 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  192 (301)
                      ..+..+.|+|-+.+.+.|+.|+.+++||.+...+...+..|...+..+.|+|+|++++.++.|..+++||+..|+....+
T Consensus       113 ~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef  192 (825)
T KOG0267|consen  113 LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF  192 (825)
T ss_pred             cCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc
Confidence            88899999999999999999999999999977777888788788999999999999999999999999999999999999


Q ss_pred             eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC
Q 022184          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG  266 (301)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  266 (301)
                      ..|. ..+..+.|+|..-.     +..++.|+++++||+++.+.+.........|.+..|+|+++.+++|....
T Consensus       193 ~~~e-~~v~sle~hp~e~L-----la~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  193 KSHE-GKVQSLEFHPLEVL-----LAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             cccc-ccccccccCchhhh-----hccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            8664 46899999998765     79999999999999999998888777788999999999999999887653

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=3.2e-25  Score=168.19  Aligned_cols=218  Identities=16%  Similarity=0.229  Sum_probs=165.0

Q ss_pred             CCceeccccccCCcceEEEECCCCC--eEEEEecCCcEEEEEEcCCcccc---------ccccccCCCCCCCCCeeEEEE
Q 022184           52 SPLVTYVFDESEGDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGATDI---------NLLAKKMPPLQDAGPQKCLSF  120 (301)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~d~~i~~w~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~  120 (301)
                      .|........|.+.++.+.-++-++  +.++=+..|.|+||++...-...         ...........|...-+.++|
T Consensus       140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW  219 (440)
T KOG0302|consen  140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW  219 (440)
T ss_pred             cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec
Confidence            3555566678899999999888765  44444567999999986432210         111111222335567789999


Q ss_pred             ee-CCCEEEEeecCCeEEEEeCCCccee---cccccCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCce-EEEEee
Q 022184          121 SV-DGSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVA-WTFLTR  194 (301)
Q Consensus       121 s~-~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-~~~~~~  194 (301)
                      || .-..|++|..-+.|++|...++.-.   ..+.+|...|..++|+|.. ..|++|+.|++|+|||+|.+.. ...+..
T Consensus       220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k  299 (440)
T KOG0302|consen  220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK  299 (440)
T ss_pred             ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence            99 3335888888899999998876542   2355688899999999954 4899999999999999998832 222334


Q ss_pred             cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC---ceEeeeeeccCCCcEEEEEcCC-CCEEEEeeCCCcEEE
Q 022184          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICV  270 (301)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i  270 (301)
                      .+...|+.+.|+.+-..     +++|++||+++|||+++   ++++..++.|+.+|+++.|+|. ...|++++.|..|.|
T Consensus       300 Ah~sDVNVISWnr~~~l-----LasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREPL-----LASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             ccCCceeeEEccCCcce-----eeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            45557999999988775     79999999999999986   4567889999999999999995 467888899999999


Q ss_pred             EeCC
Q 022184          271 VDVK  274 (301)
Q Consensus       271 ~~~~  274 (301)
                      ||+.
T Consensus       375 WDls  378 (440)
T KOG0302|consen  375 WDLS  378 (440)
T ss_pred             EEee
Confidence            9986

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=3.6e-25  Score=171.83  Aligned_cols=235  Identities=17%  Similarity=0.180  Sum_probs=193.0

Q ss_pred             ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccc---------cCCC--CCCCCCeeEEEEeeCCC
Q 022184           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK---------KMPP--LQDAGPQKCLSFSVDGS  125 (301)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~---------~~~~--~~~~~~v~~~~~s~~~~  125 (301)
                      ..+..|.-+|.+++++|++++.++++.+++|.-|++.++.....+...         ....  ..|...+.+++.|+||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            456789999999999999999999999999999999887743111111         1111  25667899999999999


Q ss_pred             EEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEE
Q 022184          126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (301)
Q Consensus       126 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  205 (301)
                      +|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....+++++.|+.+++|++.....+.++.+|++ .|..+.-
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~Ida  294 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDA  294 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeech
Confidence            999999999999999999999999999999999999998778899999999999999999888888888876 4888888


Q ss_pred             ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccc
Q 022184          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (301)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~  285 (301)
                      ...++.     +..++.|+++++|++..... ..+.++.+.+.+++|-. ...+++|+.+|.|.+|++...+++.....+
T Consensus       295 L~reR~-----vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~A  367 (479)
T KOG0299|consen  295 LSRERC-----VTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLA  367 (479)
T ss_pred             hcccce-----EEeccccceeEEEeccccce-eeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecc
Confidence            777775     56777999999999954333 35677788999999964 457999999999999999998888776555


Q ss_pred             cc----------CccEEEEEEccC
Q 022184          286 HL----------GTSIALVEFCPT  299 (301)
Q Consensus       286 ~~----------~~~v~~~~~spd  299 (301)
                      |.          ...|++++..|.
T Consensus       368 Hgv~~~~~~~~~~~Witsla~i~~  391 (479)
T KOG0299|consen  368 HGVIPELDPVNGNFWITSLAVIPG  391 (479)
T ss_pred             ccccCCccccccccceeeeEeccc
Confidence            51          115677776553

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8e-26  Score=193.08  Aligned_cols=278  Identities=18%  Similarity=0.246  Sum_probs=206.4

Q ss_pred             EEeeeecCCCccEEEecCCcccc----CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCe----EEE
Q 022184            9 CGSWIKRPENVNLVVLGKSSRAS----SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD----FVC   80 (301)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~~   80 (301)
                      -.+|+|+.  ..++|.|+..+..    +...++.||.++.........+...  + .-..+.+.++|.+.|..    ||.
T Consensus        11 ~~awSp~~--~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s--~-~s~~rF~kL~W~~~g~~~~GlIaG   85 (1049)
T KOG0307|consen   11 TFAWSPAS--PPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGS--L-QSSNRFNKLAWGSYGSHSHGLIAG   85 (1049)
T ss_pred             eEEecCCC--chhhHHHhhhhccccccccccccceeeecccCcccccccccc--c-cccccceeeeecccCCCccceeec
Confidence            46899774  5577877764432    4578889998876654321111111  1 12556889999998776    788


Q ss_pred             EecCCcEEEEEEcCC--ccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccc--cCCc
Q 022184           81 STTNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEP--KAHK  155 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~  155 (301)
                      |..||.|.+||...-  .......   .....|++.|..+.|++ .+++||+|+.||.|.|||++..+......  ...+
T Consensus        86 G~edG~I~ly~p~~~~~~~~~~~l---a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~  162 (1049)
T KOG0307|consen   86 GLEDGNIVLYDPASIIANASEEVL---ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPS  162 (1049)
T ss_pred             cccCCceEEecchhhccCcchHHH---hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcc
Confidence            889999999998763  1111111   22335889999999999 55699999999999999998765544432  2336


Q ss_pred             cEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCC-CCeeEEEEccCCCcceEEEEEEeCC--cceEEEEEc
Q 022184          156 SVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDI  231 (301)
Q Consensus       156 ~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~  231 (301)
                      .|.+++|+..- ..|++++.+|++.|||+|..+.+..+..+.. ..+..++|+|+.....   +++..+  .-.|.+||+
T Consensus       163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql---~~As~dd~~PviqlWDl  239 (1049)
T KOG0307|consen  163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL---LVASGDDSAPVIQLWDL  239 (1049)
T ss_pred             cceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee---eeecCCCCCceeEeecc
Confidence            89999999854 4788899999999999999988777765443 3478999999987632   222222  357999998


Q ss_pred             cCce-EeeeeeccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          232 STWN-KIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       232 ~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      |.-. +++.+..|...|.++.|++.+ ++|++++.|++|.+|+.++++.+..+.. . ...+..+.|+|.
T Consensus       240 R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~-~nW~fdv~w~pr  307 (1049)
T KOG0307|consen  240 RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-Q-GNWCFDVQWCPR  307 (1049)
T ss_pred             cccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-C-CcceeeeeecCC
Confidence            8643 556778999999999999965 8999999999999999999999998854 4 678999999884

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.3e-24  Score=160.20  Aligned_cols=260  Identities=13%  Similarity=0.193  Sum_probs=190.4

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      -.||.|++-   +.++|+|-      .+|.+.||+++...        ....+.+|..+|.+++||++|+.|++++.|..
T Consensus        26 a~~~~Fs~~---G~~lAvGc------~nG~vvI~D~~T~~--------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s   88 (405)
T KOG1273|consen   26 AECCQFSRW---GDYLAVGC------ANGRVVIYDFDTFR--------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWS   88 (405)
T ss_pred             cceEEeccC---cceeeeec------cCCcEEEEEccccc--------hhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence            679999987   78999987      55666899987654        24568899999999999999999999999999


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCC-c----cEEEE
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-K----SVLDM  160 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~----~i~~~  160 (301)
                      |.+||+..+..        ...+.-..+|..+.|+| +.+..++.-.+..-.+.++...+.. .+.... +    ...+.
T Consensus        89 i~lwDl~~gs~--------l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~  159 (405)
T KOG1273|consen   89 IKLWDLLKGSP--------LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHG  159 (405)
T ss_pred             eEEEeccCCCc--------eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccc
Confidence            99999998875        33334568899999999 3344444433444555555442221 111111 1    12334


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc------
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW------  234 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------  234 (301)
                      .|.+.|+++++|...|.+.++|..+.+++..+.......|..+.++..|+.     ++..+.|..|+.|+++.-      
T Consensus       160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~-----liiNtsDRvIR~ye~~di~~~~r~  234 (405)
T KOG1273|consen  160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF-----LIINTSDRVIRTYEISDIDDEGRD  234 (405)
T ss_pred             cccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE-----EEEecCCceEEEEehhhhcccCcc
Confidence            688999999999999999999999999999888766456999999999997     788899999999998621      


Q ss_pred             -eEe--eeeec--cCCCcEEEEEcCCCCEEEEeeC-CCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          235 -NKI--GHKRL--LRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       235 -~~~--~~~~~--~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                       ++.  ..+..  .+-.-.+++||.+|.|+++++. ...++||.-..|.+++.+.... ....-.+.|+|
T Consensus       235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k-gE~l~DV~whp  303 (405)
T KOG1273|consen  235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK-GEELLDVNWHP  303 (405)
T ss_pred             CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc-hhheeeccccc
Confidence             111  11110  1123456899999999998874 3579999999999988774322 35566677766

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.94  E-value=2.2e-24  Score=164.63  Aligned_cols=216  Identities=12%  Similarity=0.114  Sum_probs=175.4

Q ss_pred             cccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCe
Q 022184           58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGH  135 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~  135 (301)
                      .+.||+++|..++|+| +...||+|+.|.+|.||.+..+.....+.........|...|--++|+| -.+.|++++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4689999999999999 5568889999999999999887665555444444556888999999999 4578899999999


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      |.+||+.+++.+..+. |.+.|+++.|+.||.+|++.+.|..|+|||.++++.+..-..|.+.....+.|-.+|.  ++.
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~--i~t  232 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK--IFT  232 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc--eee
Confidence            9999999999887775 8899999999999999999999999999999999999888777777778888999998  333


Q ss_pred             EEEEeCCcceEEEEEccCceEe---eeeeccCCCcEEEEEcCCCCEEEEe-eCCCcEEEEeCCCce
Q 022184          216 CTVQRGDKALLAVYDISTWNKI---GHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKME  277 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~~  277 (301)
                      ..++...+.++.+||..+.+..   ..+.. ...|.-.-|+||.+.++.+ -.|+.|+.|++....
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            3455567899999998765432   22222 3456666678888877655 468999999997654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.3e-24  Score=166.76  Aligned_cols=241  Identities=14%  Similarity=0.168  Sum_probs=181.0

Q ss_pred             ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccccc----CCcceEEEECC-------CCCeEEEEecCCcE
Q 022184           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES----EGDPMTIAVNP-------SGDDFVCSTTNGGC   87 (301)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~-------~~~~l~~~~~d~~i   87 (301)
                      .++++++....   ....+.+|.|+.....+         +..|    .....|++|..       .|+++|.|+.|..|
T Consensus       137 DnlIl~ar~ed---dvs~LEvYVyn~~e~nl---------YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I  204 (463)
T KOG0270|consen  137 DNLILCARNED---DVSYLEVYVYNEEEENL---------YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI  204 (463)
T ss_pred             CcEEEEeeccC---CceEEEEEEEcCCCcce---------eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence            35666655322   34678899998776433         1122    23456777743       36799999999999


Q ss_pred             EEEEEcCCcccc--cccc------------ccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184           88 KLFEVYGGATDI--NLLA------------KKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (301)
Q Consensus        88 ~~w~~~~~~~~~--~~~~------------~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  152 (301)
                      .|||+.-.....  ..+.            +......|...|..++|+.. .+.||+|+.|.+|++||+.++++...+..
T Consensus       205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~  284 (463)
T KOG0270|consen  205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH  284 (463)
T ss_pred             EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence            999986432210  0000            11112246677888999884 56789999999999999999999888887


Q ss_pred             CCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceE-EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          153 AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       153 ~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                      |.++|.++.|+| ....|++|+.|++|.+.|+|..... ..++  ..+.|..++|.|.....    ++.+..||.|+-+|
T Consensus       285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~----f~~~tddG~v~~~D  358 (463)
T KOG0270|consen  285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENS----FFVSTDDGTVYYFD  358 (463)
T ss_pred             cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCcee----EEEecCCceEEeee
Confidence            888999999999 4568999999999999999953322 2222  23459999999998864    46678999999999


Q ss_pred             ccCc-eEeeeeeccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCCCce
Q 022184          231 ISTW-NKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       231 ~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      +|+. +++.+++.|..+|+++++++. ..++++++.|+.|++|++....
T Consensus       359 ~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  359 IRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             cCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            9976 788899999999999999885 4678999999999999997543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3.7e-24  Score=158.03  Aligned_cols=229  Identities=12%  Similarity=0.094  Sum_probs=178.9

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC--eEE
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFV   79 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~   79 (301)
                      +..+||+|++|+.|   +..+++|+      .|+.+++|++..+.         ...+..|.++|.++.|-+...  .|+
T Consensus        70 ~~~~PvL~v~Wsdd---gskVf~g~------~Dk~~k~wDL~S~Q---------~~~v~~Hd~pvkt~~wv~~~~~~cl~  131 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDD---GSKVFSGG------CDKQAKLWDLASGQ---------VSQVAAHDAPVKTCHWVPGMNYQCLV  131 (347)
T ss_pred             ccCCCeEEEEEccC---CceEEeec------cCCceEEEEccCCC---------eeeeeecccceeEEEEecCCCcceeE
Confidence            45789999999988   56777766      77788999997764         234678999999999987555  899


Q ss_pred             EEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC--CccE
Q 022184           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSV  157 (301)
Q Consensus        80 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~i  157 (301)
                      +|+.|++|+.||.+....        ...+.-.+.++++..  ...+++++..+..|.+|+++++....+....  .-.+
T Consensus       132 TGSWDKTlKfWD~R~~~p--------v~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~  201 (347)
T KOG0647|consen  132 TGSWDKTLKFWDTRSSNP--------VATLQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQT  201 (347)
T ss_pred             ecccccceeecccCCCCe--------eeeeeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCccccee
Confidence            999999999999986654        222333456666654  3457888888999999999776544332221  2368


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceEEEEeecCC--------CCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184          158 LDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (301)
                      ++++..+|....+.|+-.|.+.+..+..+  +.-..++.|..        ..|.+++|+|....     +++.+.||++.
T Consensus       202 R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt-----lvTaGsDGtf~  276 (347)
T KOG0647|consen  202 RCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT-----LVTAGSDGTFS  276 (347)
T ss_pred             eEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce-----EEEecCCceEE
Confidence            99999998888899999999999998876  33344444431        25788999998776     79999999999


Q ss_pred             EEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee
Q 022184          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS  263 (301)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  263 (301)
                      +||-.....+.....+..+|++.+|+.+|.++|.+.
T Consensus       277 FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  277 FWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             EecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            999988878878888999999999999999988763

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.4e-25  Score=169.43  Aligned_cols=226  Identities=13%  Similarity=0.186  Sum_probs=185.7

Q ss_pred             eccccccCCcceEEEECCCC-CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           56 TYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ...+.+|.+.|.+++=+|.. ..+++|+.||.|++||+....+...       ...|.+.|..+++..  ..+++++.|.
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------f~AH~G~V~Gi~v~~--~~~~tvgdDK  129 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------FKAHEGLVRGICVTQ--TSFFTVGDDK  129 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------eecccCceeeEEecc--cceEEecCCc
Confidence            34579999999999999977 6899999999999999998776332       234778999999976  6788999999


Q ss_pred             eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      +|+.|.+.. .++..+ .....+..+.-+..+..++|++.  .|.|||.+-..++..+....+ .+.++.|+|....+  
T Consensus       130 tvK~wk~~~-~p~~ti-lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsI--  202 (433)
T KOG0268|consen  130 TVKQWKIDG-PPLHTI-LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSI--  202 (433)
T ss_pred             ceeeeeccC-Ccceee-eccccccccccccccccccccCc--eeeecccccCCccceeecCCC-ceeEEecCCCcchh--
Confidence            999999765 333333 33456777777777778888874  699999998899999987765 49999999998874  


Q ss_pred             EEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEE
Q 022184          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV  294 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~  294 (301)
                        +++++.|+.|.+||+++..++..... ...-+.++|+|++-.+.+|++|..++.||++..+........| .+.|.++
T Consensus       203 --Las~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dV  278 (433)
T KOG0268|consen  203 --LASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDV  278 (433)
T ss_pred             --eeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEe
Confidence              67778999999999999988765543 4456789999988889999999999999999887666566889 8999999


Q ss_pred             EEccCCC
Q 022184          295 EFCPTQR  301 (301)
Q Consensus       295 ~~spdg~  301 (301)
                      +|||.|+
T Consensus       279 dfsptG~  285 (433)
T KOG0268|consen  279 DFSPTGQ  285 (433)
T ss_pred             ccCCCcc
Confidence            9999985

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=6.6e-24  Score=161.13  Aligned_cols=228  Identities=15%  Similarity=0.236  Sum_probs=168.2

Q ss_pred             cCceeEeeeCCCcceee--------eCCceeccccccCCcceEEEECCCCC-eEEEEecCCcEEEEEEcCCccccccccc
Q 022184           34 PSVLEIFSFDPKTTSVY--------TSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAK  104 (301)
Q Consensus        34 ~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~~w~~~~~~~~~~~~~~  104 (301)
                      .+.++||.+.+.-..+.        ......+++.+|.+.=+.++|||-.. .|++|..-+.|++|...++.-...    
T Consensus       174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----  249 (440)
T KOG0302|consen  174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----  249 (440)
T ss_pred             cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----
Confidence            34567777654322111        12234567889999999999999332 588888788899999988653222    


Q ss_pred             cCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcce--ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEE
Q 022184          105 KMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIW  181 (301)
Q Consensus       105 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  181 (301)
                      ..+...|...|-.++||| ....|++|+.||+|+|||++.+..  ......|.+.|..|.|+.+..+||+|+.||+++||
T Consensus       250 ~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iw  329 (440)
T KOG0302|consen  250 QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIW  329 (440)
T ss_pred             CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEE
Confidence            234455889999999999 566899999999999999998732  23346788899999999988899999999999999


Q ss_pred             eCCC---CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE----------------eeeeec
Q 022184          182 KTED---GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----------------IGHKRL  242 (301)
Q Consensus       182 d~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----------------~~~~~~  242 (301)
                      |+|+   ++++..++.| ..+|+++.|+|.....    +++++.|.+|.+||+....-                .+.+..
T Consensus       330 DLR~~~~~~pVA~fk~H-k~pItsieW~p~e~s~----iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV  404 (440)
T KOG0302|consen  330 DLRQFKSGQPVATFKYH-KAPITSIEWHPHEDSV----IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV  404 (440)
T ss_pred             EhhhccCCCcceeEEec-cCCeeEEEeccccCce----EEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence            9985   5667788765 5689999999987753    68889999999999853211                112223


Q ss_pred             c--CCCcEEEEEcCCC-CEEEEeeCCCcEEEE
Q 022184          243 L--RKPASVLSISLDG-KYLAMGSKDGDICVV  271 (301)
Q Consensus       243 ~--~~~v~~~~~s~~~-~~l~~~~~d~~i~i~  271 (301)
                      |  ...+-.+.|+++- -++++.+.|| +.||
T Consensus       405 HqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  405 HQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             ecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            3  3457778999863 4777777887 4444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.3e-24  Score=164.77  Aligned_cols=225  Identities=19%  Similarity=0.250  Sum_probs=180.7

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC-EEEEeecCCeEEEEeC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHW  141 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v~d~  141 (301)
                      .+.|+++.|+|..+.|++++.|+++++|.++..... .+....+    ...+|.+..|.|+|. .+++++....++.||+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeee----ccCccceeeecCCCceEEEecccceEEEEeec
Confidence            567999999999999999999999999999865432 2111111    246899999999998 8999999999999999


Q ss_pred             CCcceecc--cccCC-ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184          142 PSLRIILD--EPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       142 ~~~~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      .+.+....  ..++. ..+.....+|++++|+..+..|.|.+....+++.+..++..  +.+..+.|+.+++.     ++
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--G~v~~~~fsSdsk~-----l~  360 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--GVVSDFTFSSDSKE-----LL  360 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec--cEEeeEEEecCCcE-----EE
Confidence            88765322  22222 35778889999999999999999999999999999998854  46999999999987     67


Q ss_pred             EeCCcceEEEEEccCceEeeeeeccCC-CcEEEEEcCCCCEEEEeeCCCcEEEEeCCC------ceeeccccccccCccE
Q 022184          219 QRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSKDGDICVVDVKK------MEINHWSKRLHLGTSI  291 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~------~~~~~~~~~~~~~~~v  291 (301)
                      ..+.+|.|.+||+++..++..+..... .-++++.|+++.|||+|+..|.|.|||.++      .+++..+...  ...|
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~I  438 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTAI  438 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--heee
Confidence            788899999999999888776654332 346788889999999999999999999764      2444444222  5789


Q ss_pred             EEEEEccCCC
Q 022184          292 ALVEFCPTQR  301 (301)
Q Consensus       292 ~~~~~spdg~  301 (301)
                      ++++|+||++
T Consensus       439 tsl~Fn~d~q  448 (514)
T KOG2055|consen  439 TSLQFNHDAQ  448 (514)
T ss_pred             eeeeeCcchh
Confidence            9999999974

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=3.3e-24  Score=172.87  Aligned_cols=273  Identities=13%  Similarity=0.122  Sum_probs=193.9

Q ss_pred             EEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcE
Q 022184            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (301)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i   87 (301)
                      +++.|++.+....+++++.      .++.+.+++.......+  +.........|...|..+.|-|....|++++.|.++
T Consensus        53 f~~sFs~~~n~eHiLavad------E~G~i~l~dt~~~~fr~--ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~  124 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVAD------EDGGIILFDTKSIVFRL--EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI  124 (720)
T ss_pred             ccccccCCCCccceEEEec------CCCceeeecchhhhcch--hhhhhcccccccceeEeeccCCCceeEEEccCCcee
Confidence            5588888887778888876      45555666544332221  111123457899999999999966689999999999


Q ss_pred             EEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcce--------------------
Q 022184           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI--------------------  146 (301)
Q Consensus        88 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~--------------------  146 (301)
                      ++||++..+....     ...+.|.+.+.+++|.| |...|++|+.||.|.|||++-...                    
T Consensus       125 r~Wdvk~s~l~G~-----~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  125 RPWDVKTSRLVGG-----RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             eeeeeccceeecc-----eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence            9999998876322     12456889999999999 566789999999999999853220                    


Q ss_pred             -------ecccccCCccEEE---EEecCCCcEEEEEeC-CCcEEEEeCCCCceEEEEe--------ec--CCCCeeEEEE
Q 022184          147 -------ILDEPKAHKSVLD---MDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLT--------RN--SDEKIELCRF  205 (301)
Q Consensus       147 -------~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~--------~~--~~~~v~~~~~  205 (301)
                             +.....+...|.+   +.+..|...||+++. |+.|++||++.........        .+  ....+.++..
T Consensus       200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l  279 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL  279 (720)
T ss_pred             CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence                   0011122233444   555568888998887 9999999999765433221        11  1123667777


Q ss_pred             ccCCCcceEEEEEEeCCcceEEEEEccCceE--eeeeeccCCC--cEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecc
Q 022184          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKP--ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (301)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~  281 (301)
                      ...|.+     +++.+.|+.|++||+.+...  +..+.++...  -..-..+||+.+|++|+.|...++|.+.+.+..-.
T Consensus       280 DssGt~-----L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~  354 (720)
T KOG0321|consen  280 DSSGTY-----LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA  354 (720)
T ss_pred             cCCCCe-----EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence            777887     56677799999999986432  2223222211  11224689999999999999999999999887777


Q ss_pred             ccccccCccEEEEEEccC
Q 022184          282 SKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       282 ~~~~~~~~~v~~~~~spd  299 (301)
                      +..+| ...|++++|.|.
T Consensus       355 ~l~Gh-t~eVt~V~w~pS  371 (720)
T KOG0321|consen  355 LLLGH-TREVTTVRWLPS  371 (720)
T ss_pred             hhhCc-ceEEEEEeeccc
Confidence            77899 999999999874

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=3.6e-24  Score=175.11  Aligned_cols=245  Identities=12%  Similarity=0.123  Sum_probs=197.5

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC---CCCeE
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGDDF   78 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l   78 (301)
                      ++...+.|++.+|+   +.++|.|..      .|.+++|++..-.        ....++.|+..|.|+.|+.   ..++|
T Consensus       457 d~r~G~R~~~vSp~---gqhLAsGDr------~GnlrVy~Lq~l~--------~~~~~eAHesEilcLeyS~p~~~~kLL  519 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPD---GQHLASGDR------GGNLRVYDLQELE--------YTCFMEAHESEILCLEYSFPVLTNKLL  519 (1080)
T ss_pred             CcccceEEEEECCC---cceecccCc------cCceEEEEehhhh--------hhhheecccceeEEEeecCchhhhHhh
Confidence            34577999999988   789999884      4556888875432        1345689999999999986   45689


Q ss_pred             EEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC--CEEEEeecCCeEEEEeCCC-cceeccccc---
Q 022184           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMHWPS-LRIILDEPK---  152 (301)
Q Consensus        79 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~v~d~~~-~~~~~~~~~---  152 (301)
                      |++++|.-|.+||+...-...      .....|...|+++.|..+|  ..+++++.|..|.+ +... ......+..   
T Consensus       520 ASasrdRlIHV~Dv~rny~l~------qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~  592 (1080)
T KOG1408|consen  520 ASASRDRLIHVYDVKRNYDLV------QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQ  592 (1080)
T ss_pred             hhccCCceEEEEecccccchh------hhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceecccccc
Confidence            999999999999997553311      2223478899999999876  67888998987764 3322 111111222   


Q ss_pred             --CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC--CCCeeEEEEccCCCcceEEEEEEeCCcceEEE
Q 022184          153 --AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (301)
Q Consensus       153 --~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~  228 (301)
                        .+..+++++..|..+++++++.|..|+|||+.+++....+++.+  ++..-.+...|.|.+     +++...|.++.+
T Consensus       593 t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY-----~atScsdktl~~  667 (1080)
T KOG1408|consen  593 TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY-----LATSCSDKTLCF  667 (1080)
T ss_pred             ccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE-----EEEeecCCceEE
Confidence              22478999999999999999999999999999999999998644  345677889999998     799999999999


Q ss_pred             EEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      +|.-+++++....+|...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus       668 ~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  668 VDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            99999999999999999999999999999999999999999999864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.7e-24  Score=158.34  Aligned_cols=197  Identities=19%  Similarity=0.197  Sum_probs=146.7

Q ss_pred             cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC
Q 022184           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~  141 (301)
                      |.-.+..+-...++.+|++++.|..|.+|++. ++....+..       ....-+..+.||+|+++++++..-.|++|.+
T Consensus       186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-------nq~~n~~aavSP~GRFia~~gFTpDVkVwE~  257 (420)
T KOG2096|consen  186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-------NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEP  257 (420)
T ss_pred             cccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-------ccccccceeeCCCCcEEEEecCCCCceEEEE
Confidence            34456666667778899999999999999998 433221111       1233456789999999999999999999986


Q ss_pred             C---Cc-----ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC----ceEEEEee------cCCCCeeEE
Q 022184          142 P---SL-----RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG----VAWTFLTR------NSDEKIELC  203 (301)
Q Consensus       142 ~---~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~------~~~~~v~~~  203 (301)
                      -   .|     ..+..+.+|+..|..++|+|+.+.+++.+.||++++||++-.    +....++.      ..+.....+
T Consensus       258 ~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL  337 (420)
T KOG2096|consen  258 IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRL  337 (420)
T ss_pred             EeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEE
Confidence            2   22     234567889999999999999999999999999999998531    11111111      112234489


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee-eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                      +.+|.|+.      ++.+....+++|..++++....+ ..|...|.+++|+++|+++++++ |..++++.-
T Consensus       338 ~lsP~g~~------lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~n  401 (420)
T KOG2096|consen  338 ELSPSGDS------LAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRN  401 (420)
T ss_pred             EeCCCCcE------EEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence            99999995      44455667999999988776544 45788999999999999999997 567888763

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=1.5e-23  Score=170.47  Aligned_cols=239  Identities=13%  Similarity=0.132  Sum_probs=193.5

Q ss_pred             CCcCceeEeeeCCCcceeeeCCceeccccccCCcceE-EEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCC
Q 022184           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMT-IAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL  109 (301)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  109 (301)
                      +.|+++++|.-..  +.+    .....+.+|.+-|.. +++.+ ++-.+++|+.|+.|.+|.+.+....       ....
T Consensus        32 sRd~t~~vw~~~~--~~~----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~-------~~Lk   98 (745)
T KOG0301|consen   32 SRDGTVKVWAKKG--KQY----LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL-------YTLK   98 (745)
T ss_pred             CCCCceeeeeccC--ccc----ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch-------hhhh
Confidence            3677788886432  222    113446778887777 88876 4446999999999999999877652       3334


Q ss_pred             CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 022184          110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (301)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  189 (301)
                      .|...|.+++...++. +++|+.|.++++|..  ++....+.+|...|++++.-|++ .++||+.|.+|++|.-  ++.+
T Consensus        99 gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l  172 (745)
T KOG0301|consen   99 GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLL  172 (745)
T ss_pred             ccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchh
Confidence            5888999998877776 999999999999975  45556688999999999999988 8999999999999974  7788


Q ss_pred             EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEE
Q 022184          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (301)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  269 (301)
                      .++.+|.+ .|+.+++-+++.      +++++.||.|++|++ +++.+....+|...+++++..+++..++++++|++++
T Consensus       173 ~tf~gHtD-~VRgL~vl~~~~------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr  244 (745)
T KOG0301|consen  173 KTFSGHTD-CVRGLAVLDDSH------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR  244 (745)
T ss_pred             hhhccchh-heeeeEEecCCC------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence            88888655 699999999988      589999999999999 6788889999999999999888899999999999999


Q ss_pred             EEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       270 i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ||+..  ++.+.+.  |+...|+++.+-++|.
T Consensus       245 iW~~~--e~~q~I~--lPttsiWsa~~L~NgD  272 (745)
T KOG0301|consen  245 IWKKD--ECVQVIT--LPTTSIWSAKVLLNGD  272 (745)
T ss_pred             EeecC--ceEEEEe--cCccceEEEEEeeCCC
Confidence            99987  4445442  2256888888877763

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.2e-24  Score=185.91  Aligned_cols=257  Identities=13%  Similarity=0.153  Sum_probs=196.2

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~   82 (301)
                      ..+-+.++|.+...+..=++.|+     ..||.|.+|+-+.....  ...........|++.|..+.|++... .||+|+
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG-----~edG~I~ly~p~~~~~~--~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa  136 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGG-----LEDGNIVLYDPASIIAN--ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA  136 (1049)
T ss_pred             cccceeeeecccCCCccceeecc-----ccCCceEEecchhhccC--cchHHHhhhcccCCceeeeeccccCCceeeccC
Confidence            45667889987643322233333     27788888877663111  12223456788999999999999655 999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCc--cEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVLD  159 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~i~~  159 (301)
                      .||.|.|||+.+.+......     .....+.|.+++|+. ....|++++.+|.+.|||++..+.+..+..+..  .+..
T Consensus       137 ~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~  211 (1049)
T KOG0307|consen  137 DDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV  211 (1049)
T ss_pred             CCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence            99999999998865533221     222457899999998 456788999999999999998888777655543  5789


Q ss_pred             EEecCCCc-EEEEEeCCC---cEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184          160 MDFSLDSE-FLATTSTDG---SARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (301)
Q Consensus       160 ~~~~~~~~-~l~~~~~d~---~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  234 (301)
                      ++|+|+.. .+++++.|.   .|.+||+|... +++.+..|. ..|.++.|++.+..+    +++++.|++|.+|+.+++
T Consensus       212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~-~GilslsWc~~D~~l----llSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ-RGILSLSWCPQDPRL----LLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc-cceeeeccCCCCchh----hhcccCCCCeeEecCCCc
Confidence            99999764 677777554   59999998654 445555554 459999999998653    689999999999999999


Q ss_pred             eEeeeeeccCCCcEEEEEcCCCC-EEEEeeCCCcEEEEeCCCce
Q 022184          235 NKIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~~~~~~~  277 (301)
                      +.+..+......+..+.|+|... .+++++.||.|.||.+....
T Consensus       287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            99999988888999999999654 88999999999999997653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=3.5e-23  Score=168.41  Aligned_cols=210  Identities=13%  Similarity=0.237  Sum_probs=175.6

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  112 (301)
                      .|..+.+|..+...        +...+.+|...|.++....++. +++|+.|.++++|.......         ....|+
T Consensus        79 ~D~~i~v~~~~~~~--------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~---------~l~gH~  140 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAE--------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY---------SLQGHT  140 (745)
T ss_pred             ccceEEEEecCCCC--------chhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc---------ccCCcc
Confidence            55666676665433        3567899999999999888887 99999999999999865432         234588


Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL  192 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  192 (301)
                      ..|.+++.-|++ .+++|+.|.+|++|.-  ++.+..+.+|.+.|+.+++-+++ .|++++.||.|++|++ +++++..+
T Consensus       141 asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~  215 (745)
T KOG0301|consen  141 ASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM  215 (745)
T ss_pred             hheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee
Confidence            999999999987 7999999999999984  77788899999999999999765 5899999999999999 78888888


Q ss_pred             eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      .+|.. .+++++...++..     +++.++|+++++|+..  ++.+.+......++++.+-++|. +++|+.||.|+||.
T Consensus       216 ~ghtn-~vYsis~~~~~~~-----Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT  286 (745)
T KOG0301|consen  216 HGHTN-FVYSISMALSDGL-----IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT  286 (745)
T ss_pred             eccce-EEEEEEecCCCCe-----EEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence            87765 5999997766665     7999999999999987  66667777777899999988886 78888899999998


Q ss_pred             CC
Q 022184          273 VK  274 (301)
Q Consensus       273 ~~  274 (301)
                      .+
T Consensus       287 ~~  288 (745)
T KOG0301|consen  287 VD  288 (745)
T ss_pred             ec
Confidence            76

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.4e-23  Score=173.39  Aligned_cols=227  Identities=12%  Similarity=0.156  Sum_probs=186.2

Q ss_pred             cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEeeCCCEEEEeecCCeEEE
Q 022184           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (301)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v  138 (301)
                      ..|+..-+.++|.|+|++|++++.||.|++|+.......       ...+. +...|.+++.  ++++|++++.+++|.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-------P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~   80 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-------PETIDISGELVSSIAC--YSNHFLTGSEQNTVLR   80 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-------CchhhccCceeEEEee--cccceEEeeccceEEE
Confidence            368888999999999999999999999999998766321       22222 4455655554  5669999999999999


Q ss_pred             EeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      |.+.+++.-..+..-.-++.+++++-+|+++|.|+.|-.|++.++.+......+.++ .++|.++.|+|.++.     ++
T Consensus        81 y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~f-----LA  154 (933)
T KOG1274|consen   81 YKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGNF-----LA  154 (933)
T ss_pred             eeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCCE-----EE
Confidence            999988765455555678999999999999999999999999999998888888765 568999999999997     78


Q ss_pred             EeCCcceEEEEEccCceEeeeeecc--------CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCcc
Q 022184          219 QRGDKALLAVYDISTWNKIGHKRLL--------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~  290 (301)
                      +..-||.|++||+.++.....+...        ...+..++|+|+|..+++.+.|+.|++|+..+++....+...+....
T Consensus       155 vss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~  234 (933)
T KOG1274|consen  155 VSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK  234 (933)
T ss_pred             EEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc
Confidence            8889999999999988765443321        23567799999988888888999999999999988877754442455


Q ss_pred             EEEEEEccCCC
Q 022184          291 IALVEFCPTQR  301 (301)
Q Consensus       291 v~~~~~spdg~  301 (301)
                      +..++|+|+|+
T Consensus       235 ~~~~~wsPnG~  245 (933)
T KOG1274|consen  235 FSDLQWSPNGK  245 (933)
T ss_pred             eEEEEEcCCCc
Confidence            99999999996

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.3e-24  Score=159.71  Aligned_cols=225  Identities=14%  Similarity=0.181  Sum_probs=184.6

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      ...+.||.+.|..++.......+.+++.|.+-+||.++++.+.       .....|.+.|++++|++.+.++++++.|++
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL-------~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t  213 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL-------ATYTGHTGSVNSIKFHNSGLLLLTASGDET  213 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccce-------eeecccccceeeEEeccccceEEEccCCcc
Confidence            4568899999999999887788899999999999999999883       334458899999999999999999999999


Q ss_pred             EEEEeC------CCc----------------------------------ceecccccCCccEEEEEecCCCcEEEEEeCC
Q 022184          136 LRIMHW------PSL----------------------------------RIILDEPKAHKSVLDMDFSLDSEFLATTSTD  175 (301)
Q Consensus       136 i~v~d~------~~~----------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  175 (301)
                      -.||..      ...                                  .++..+.+|...|.+..|-..|+.+++++.|
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD  293 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD  293 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence            999962      110                                  0123455677788889999999999999999


Q ss_pred             CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-eEeeeeeccCCCcEEEEEcC
Q 022184          176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISL  254 (301)
Q Consensus       176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~  254 (301)
                      .+-.+||+++++.+..+.+|.. ..+.++-+|..+.     +++++.|.+.++||++.. ..+..+.+|...|+++.|..
T Consensus       294 RTAnlwDVEtge~v~~LtGHd~-ELtHcstHptQrL-----VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~  367 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNILTGHDS-ELTHCSTHPTQRL-----VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT  367 (481)
T ss_pred             ccceeeeeccCceeccccCcch-hccccccCCcceE-----EEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence            9999999999999999988755 5888888999886     789999999999999843 23567899999999999987


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCce-eeccccccccCccEEEEEEc
Q 022184          255 DGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFC  297 (301)
Q Consensus       255 ~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~s  297 (301)
                      +. .+++|+.|.+|++||+++.. ++..+..   .++++.++.+
T Consensus       368 dd-~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs  407 (481)
T KOG0300|consen  368 DD-RVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVS  407 (481)
T ss_pred             CC-ceeecCCCceEEEeeeccccCcceeeec---CCccceeEee
Confidence            65 58899999999999998753 3444322   3455555554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=4.7e-23  Score=153.75  Aligned_cols=269  Identities=17%  Similarity=0.209  Sum_probs=188.2

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceee------eCCceeccccccCCcceEEEEC-------C
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY------TSPLVTYVFDESEGDPMTIAVN-------P   73 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~~-------~   73 (301)
                      ...+.|+||   +..+.+      ...++.+++|.+.+......      ........+ .....|...+|-       |
T Consensus        52 ~kgckWSPD---GSciL~------~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP  121 (406)
T KOG2919|consen   52 LKGCKWSPD---GSCILS------LSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQP  121 (406)
T ss_pred             hccceeCCC---CceEEe------ecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCC
Confidence            346789988   444433      23788999998865432211      011111111 124567888874       6


Q ss_pred             CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC---CCeeEEEEeeCCCEEEEeecCCeEEEEeC-CCccee--
Q 022184           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA---GPQKCLSFSVDGSRFAAGGVDGHLRIMHW-PSLRII--  147 (301)
Q Consensus        74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~v~d~-~~~~~~--  147 (301)
                      +..++++.+++.-|++||.-+++.....     ....|.   ....+++|+|||..|++|. ...|++||+ +.|...  
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy-----~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~v  195 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASY-----RAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPV  195 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccch-----hhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcc
Confidence            7789999999999999999988763322     112222   3457899999999998876 678999999 454421  


Q ss_pred             cccc-----cCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184          148 LDEP-----KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       148 ~~~~-----~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                      ....     +..+-|.+++|+| +.+.++.++...++-||.-..+.++..+-++ .+.|+.+.|.++|+++|    ..+.
T Consensus       196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edGn~lf----sGaR  270 (406)
T KOG2919|consen  196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDGNKLF----SGAR  270 (406)
T ss_pred             hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCcCeec----cccc
Confidence            1111     2245688999999 5569999999999999998888888888755 45699999999999832    3344


Q ss_pred             CcceEEEEEccCceE-eeeeeccCC-CcEE--EEEcCCCCEEEEeeCCCcEEEEeCCC-ceeeccccccccCccEEEEEE
Q 022184          222 DKALLAVYDISTWNK-IGHKRLLRK-PASV--LSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~-~~~~~~~~~-~v~~--~~~s~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~  296 (301)
                      .+-.|..||++.... +..+..|.. .-..  ....|++++|++|+.||.|++||+++ +.....+ ..+ +..++.+++
T Consensus       271 k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~-~~~-sd~vNgvsl  348 (406)
T KOG2919|consen  271 KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT-GNY-SDTVNGVSL  348 (406)
T ss_pred             CCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc-ccc-cccccceec
Confidence            577899999987543 334444433 2223  34578899999999999999999998 5545544 456 788999988


Q ss_pred             cc
Q 022184          297 CP  298 (301)
Q Consensus       297 sp  298 (301)
                      +|
T Consensus       349 nP  350 (406)
T KOG2919|consen  349 NP  350 (406)
T ss_pred             Cc
Confidence            87

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.92  E-value=1.5e-23  Score=160.63  Aligned_cols=288  Identities=13%  Similarity=0.107  Sum_probs=197.1

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceee-eCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ..||+.+.|.+..  .+.+|+|+      .|..++||........-. ........+..|...|+++.|+|+|+.||+|+
T Consensus        13 ~~pv~s~dfq~n~--~~~laT~G------~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~   84 (434)
T KOG1009|consen   13 HEPVYSVDFQKNS--LNKLATAG------GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG   84 (434)
T ss_pred             CCceEEEEeccCc--ccceeccc------CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence            4678888888553  44777766      677889999865432110 12223456889999999999999999999999


Q ss_pred             cCCcEEEEEEcCCcc-----c----cccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC
Q 022184           83 TNGGCKLFEVYGGAT-----D----INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~-----~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  153 (301)
                      .+|.+.+|....-..     .    ............|...+..++|+|++.++++++.|..+++||+..|+....+..|
T Consensus        85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh  164 (434)
T KOG1009|consen   85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH  164 (434)
T ss_pred             CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence            999999999872111     0    0001111122236788999999999999999999999999999999999888889


Q ss_pred             CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-----e----cCC-------------CCeeEEEEccCCCc
Q 022184          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-----R----NSD-------------EKIELCRFSKDGTK  211 (301)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~----~~~-------------~~v~~~~~~~~~~~  211 (301)
                      ...+..++|.|-++++++-+.|...+.+++.....+....     .    +..             .-...++|+|+|..
T Consensus       165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l  244 (434)
T KOG1009|consen  165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL  244 (434)
T ss_pred             ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence            8999999999999999999999887777765433322211     0    000             12456789999986


Q ss_pred             ceEEE-EEEeCC---cceEEEEEccCc-eEeeeeeccCCCcEEEEEcC------------------CCCEEEEeeCCCcE
Q 022184          212 PFLFC-TVQRGD---KALLAVYDISTW-NKIGHKRLLRKPASVLSISL------------------DGKYLAMGSKDGDI  268 (301)
Q Consensus       212 ~~~~~-~~~~~~---~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~------------------~~~~l~~~~~d~~i  268 (301)
                      +..-. ++..+.   -+..++|+-... ++...+.....+...+.|+|                  -+..+|.++. +.|
T Consensus       245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~sv  323 (434)
T KOG1009|consen  245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSV  323 (434)
T ss_pred             EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceE
Confidence            21100 000111   123345543321 22333444444445555544                  1223455554 589


Q ss_pred             EEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       269 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++||.++.+++......| -..++.++|++||.
T Consensus       324 yvydtq~~~P~~~v~nih-y~~iTDiaws~dg~  355 (434)
T KOG1009|consen  324 YVYDTQTLEPLAVVDNIH-YSAITDIAWSDDGS  355 (434)
T ss_pred             EEeccccccceEEEeeee-eeeecceeecCCCc
Confidence            999999999988888889 89999999999973

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.5e-22  Score=148.81  Aligned_cols=233  Identities=16%  Similarity=0.147  Sum_probs=169.6

Q ss_pred             cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEE
Q 022184           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLR  137 (301)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~  137 (301)
                      .+|.+-|.++.|.+.|+++|+|+.|++++|||.+..........   .-..|.+.|..+.|.+  -|+.+|+++.|+++.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts---~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTS---SWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEee---eEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            57899999999999999999999999999999866554333322   1224788999999966  589999999999999


Q ss_pred             EEeCCC---------cceecccccCCccEEEEEecC--CCcEEEEEeCCCcEEEEeCCCCceEEEE------e------e
Q 022184          138 IMHWPS---------LRIILDEPKAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFL------T------R  194 (301)
Q Consensus       138 v~d~~~---------~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~------~  194 (301)
                      ||.-..         .....++....+.|+++.|.|  -|-.||+++.||.+|||+....-.+...      .      .
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            997421         112234445567899999999  4668999999999999987654332222      1      1


Q ss_pred             cCCCCeeEEEEccCCCcceEEEEEEeCCc-----ceEEEEEccC----ceEeeeeeccCCCcEEEEEcCC----CCEEEE
Q 022184          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDIST----WNKIGHKRLLRKPASVLSISLD----GKYLAM  261 (301)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~s~~----~~~l~~  261 (301)
                      .+..+..|+.|+|..-..-+  ++.++.+     +.+.||....    ...+..+..+..+|+.++|.|+    -..||+
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~--iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv  244 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPL--IAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV  244 (361)
T ss_pred             cccCcceEEeeccccccCce--EEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence            23346789999976543222  3444433     4788887543    3456677789999999999996    357999


Q ss_pred             eeCCCcEEEEeCCCc--------------------eeeccccccccCccEEEEEEccCC
Q 022184          262 GSKDGDICVVDVKKM--------------------EINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       262 ~~~d~~i~i~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      ++.|| |+||++...                    +.+..+ ..| .+.|+.+.|+-.|
T Consensus       245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H-~~~VWrv~wNmtG  300 (361)
T KOG2445|consen  245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDH-NGEVWRVRWNMTG  300 (361)
T ss_pred             eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCC-CCceEEEEEeeee
Confidence            99999 999998731                    111222 567 8899999997654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.2e-23  Score=160.69  Aligned_cols=230  Identities=12%  Similarity=0.094  Sum_probs=178.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      .+||.|++-+|.   +.+++.|+      ..+.+.+|.+...  .+      ...+.+|-..|+++.|+-||.+|++|+.
T Consensus        81 Pg~v~al~s~n~---G~~l~ag~------i~g~lYlWelssG--~L------L~v~~aHYQ~ITcL~fs~dgs~iiTgsk  143 (476)
T KOG0646|consen   81 PGPVHALASSNL---GYFLLAGT------ISGNLYLWELSSG--IL------LNVLSAHYQSITCLKFSDDGSHIITGSK  143 (476)
T ss_pred             ccceeeeecCCC---ceEEEeec------ccCcEEEEEeccc--cH------HHHHHhhccceeEEEEeCCCcEEEecCC
Confidence            478999999877   56777655      5556677776532  22      4457899999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccc--cccccCCCCCCCCCeeEEEEeeC--CCEEEEeecCCeEEEEeCCCcceecccccCCccEEE
Q 022184           84 NGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~  159 (301)
                      ||.|.+|.+..--....  ........-.|.-+|+.+...+.  ..++++++.|.++++||+..+..+.++. ....+.+
T Consensus       144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~a  222 (476)
T KOG0646|consen  144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKA  222 (476)
T ss_pred             CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCccee
Confidence            99999999864322111  11111223346778999888764  4579999999999999999998876653 4568999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEeCCCC----------------ceEEEEeecCC-CCeeEEEEccCCCcceEEEEEEeCC
Q 022184          160 MDFSLDSEFLATTSTDGSARIWKTEDG----------------VAWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGD  222 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~  222 (301)
                      ++.+|-++.++.|+.+|.|.+.++..-                .....+.+|.. ..|+|++.+-||..     +++|+.
T Consensus       223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgtl-----LlSGd~  297 (476)
T KOG0646|consen  223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTL-----LLSGDE  297 (476)
T ss_pred             EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccE-----EEeeCC
Confidence            999999999999999999998887532                22334444443 37999999999997     899999


Q ss_pred             cceEEEEEccCceEeeeeeccCCCcEEEEEcCCC
Q 022184          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDG  256 (301)
Q Consensus       223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~  256 (301)
                      ||.+++||+.+.++++.+....++|+.+.+.|=.
T Consensus       298 dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  298 DGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             CCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence            9999999999999888887678899999996643

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=1e-22  Score=165.73  Aligned_cols=273  Identities=14%  Similarity=0.178  Sum_probs=195.3

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      -+.+-|+|+   .++++.-+      .-|..++|. +.+...+.    ....+.||.+.|.+++|+|.|++|++++.|.+
T Consensus       319 F~g~lw~~n---~~~ii~~g------~~Gg~hlWk-t~d~~~w~----~~~~iSGH~~~V~dv~W~psGeflLsvs~DQT  384 (764)
T KOG1063|consen  319 FWGGLWSPN---SNVIIAHG------RTGGFHLWK-TKDKTFWT----QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQT  384 (764)
T ss_pred             eeeEEEcCC---CCEEEEec------ccCcEEEEe-ccCcccee----eccccccccccceeeeecCCCCEEEEeccccc
Confidence            456677766   34444432      345568887 33333332    24457899999999999999999999999999


Q ss_pred             EEEEEEcCCcc---------------------------------------------------------------------
Q 022184           87 CKLFEVYGGAT---------------------------------------------------------------------   97 (301)
Q Consensus        87 i~~w~~~~~~~---------------------------------------------------------------------   97 (301)
                      -++|-.-..+.                                                                     
T Consensus       385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V  464 (764)
T KOG1063|consen  385 TRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV  464 (764)
T ss_pred             eeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence            99876542221                                                                     


Q ss_pred             ----------------------------------------------ccccccccCCCCCCCCCeeEEEEeeCCCEEEEee
Q 022184           98 ----------------------------------------------DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (301)
Q Consensus        98 ----------------------------------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (301)
                                                                    ...+..+..+...|.-.|++++.+|+++++|+++
T Consensus       465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaC  544 (764)
T KOG1063|consen  465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASAC  544 (764)
T ss_pred             ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehh
Confidence                                                          0000111122244566899999999999999997


Q ss_pred             cC-----CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE-EE--EeecCCCCeeEE
Q 022184          132 VD-----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW-TF--LTRNSDEKIELC  203 (301)
Q Consensus       132 ~d-----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~--~~~~~~~~v~~~  203 (301)
                      ..     ..|++|+..+...+..+..|.-.|+.++|+||+++|++.++|+++.+|........ ..  ....|...|.++
T Consensus       545 KS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc  624 (764)
T KOG1063|consen  545 KSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC  624 (764)
T ss_pred             hhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc
Confidence            54     46899999888888888899889999999999999999999999999987433211 11  123345579999


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEccCc--eEeee--eeccCCCcEEEEEcCC-----CCEEEEeeCCCcEEEEeCC
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NKIGH--KRLLRKPASVLSISLD-----GKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~--~~~~~~~v~~~~~s~~-----~~~l~~~~~d~~i~i~~~~  274 (301)
                      .|+|++.+     +++++.|.+|++|.....  +.+..  ...+...|+.+++.|-     +..+++|-..|.|.+|...
T Consensus       625 sW~pde~~-----FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  625 SWSPDEKY-----FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             ccCcccce-----eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            99999998     799999999999998776  33322  2345678999999772     3378888899999999965


Q ss_pred             Cce---------eeccc--cccccCccEEEEEEccC
Q 022184          275 KME---------INHWS--KRLHLGTSIALVEFCPT  299 (301)
Q Consensus       275 ~~~---------~~~~~--~~~~~~~~v~~~~~spd  299 (301)
                      .-+         .....  ..+| .+.|+.+.|+|.
T Consensus       700 ~~~~~~~~~~~~~~~~l~~~~~~-~~aV~rl~w~p~  734 (764)
T KOG1063|consen  700 REHRQVTVGTFNLDTRLCATIGP-DSAVNRLLWRPT  734 (764)
T ss_pred             cccccccceeeeeccccccccCh-HHhhheeEeccc
Confidence            111         11111  1234 678999999985

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.91  E-value=2e-22  Score=148.24  Aligned_cols=241  Identities=13%  Similarity=0.215  Sum_probs=182.5

Q ss_pred             EEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEEecC-------CcEEEEEE
Q 022184           21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTN-------GGCKLFEV   92 (301)
Q Consensus        21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d-------~~i~~w~~   92 (301)
                      -+.+|+...  -.+|.+.+..+++....+.     ...|..|.+.|..++-+|-.+ .|+++-.+       ..+-||.+
T Consensus        28 cFlvgTnsl--K~dNqVhll~~d~e~s~l~-----skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~i  100 (370)
T KOG1007|consen   28 CFLVGTNSL--KEDNQVHLLRLDSEGSELL-----SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQI  100 (370)
T ss_pred             EEEEecccc--CCcceeEEEEecCccchhh-----hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEec
Confidence            444555433  2568999999999886553     346778899999999999555 55555332       24779998


Q ss_pred             cCCccccccc-cccCCCC--CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee-cccc-----cCCccEEEEEec
Q 022184           93 YGGATDINLL-AKKMPPL--QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEP-----KAHKSVLDMDFS  163 (301)
Q Consensus        93 ~~~~~~~~~~-~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~-----~~~~~i~~~~~~  163 (301)
                      .......... ......+  .+.+.+.|+.|.|++..+++-. |..|.+|++..+..+ ..+.     .+....++-+|+
T Consensus       101 pe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Ws  179 (370)
T KOG1007|consen  101 PEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWS  179 (370)
T ss_pred             ccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccC
Confidence            7654431111 0111111  2346899999999999888877 888999999876652 2221     233467888999


Q ss_pred             C--CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Eeeee
Q 022184          164 L--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHK  240 (301)
Q Consensus       164 ~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~  240 (301)
                      |  |++.+++.+ |+++..||+|+.++...+...|...+..+.|+|+-+++    ++++++||.|++||.+..+ ++..+
T Consensus       180 pHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~----lvt~gDdgyvriWD~R~tk~pv~el  254 (370)
T KOG1007|consen  180 PHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHI----LVTCGDDGYVRIWDTRKTKFPVQEL  254 (370)
T ss_pred             CCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEE----EEEcCCCccEEEEeccCCCcccccc
Confidence            9  777777764 79999999999999888888888889999999998874    7999999999999998654 57788


Q ss_pred             eccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCC
Q 022184          241 RLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       241 ~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~  274 (301)
                      ..|...++++.|+|. .++|++++.|..|.+|...
T Consensus       255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             CCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            899999999999994 6789999999999999764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=151.18  Aligned_cols=195  Identities=15%  Similarity=0.194  Sum_probs=154.7

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc
Q 022184           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (301)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  145 (301)
                      ..|+.|++.|.+||+|+.||.|.+||+.+.....       ....|..+|.+++||+||+.|++++.|..|.+||+..|.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar-------~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR-------MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh-------hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence            8899999999999999999999999999876421       222477899999999999999999999999999999999


Q ss_pred             eecccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecC----CCCeeEEEEccCCCcceEEEEEEe
Q 022184          146 IILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      ++..+ ...++|+.+.|+|... ..++.-.+..-.+-++..++. ..+....    .....+..|.+.|++     +.+|
T Consensus        99 ~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~y-----IitG  171 (405)
T KOG1273|consen   99 PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKY-----IITG  171 (405)
T ss_pred             ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCE-----EEEe
Confidence            77665 4567999999999433 333333444455555554222 1121111    112334468999998     7999


Q ss_pred             CCcceEEEEEccCceEeeeeeccC-CCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          221 GDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      ...|.+.++|..+.+++..++... ..|..+.++..|+.|+.-+.|..|+.|+++
T Consensus       172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            999999999999999988887766 789999999999999999999999999987

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.7e-22  Score=161.02  Aligned_cols=224  Identities=12%  Similarity=0.161  Sum_probs=181.9

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      ..+|.+++++.+.+.||.+-.+|.|.+|++...-.......     .+....|.+++|++ +..|++.+.+|.|.-||+.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~-----g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIH-----GPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEe-----cCCCCceeeEEEcc-CCeEEeecCCceEEEEecc
Confidence            56799999999999999999999999999987654222221     13457899999995 4568888889999999999


Q ss_pred             CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-ecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                      +++....+....+.|++++.+|.+..++.|++||.+..++...++...... ....+++.+++|+|++.+     ++.|+
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-----i~~Gs  173 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-----IAGGS  173 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-----EEecc
Confidence            999988888888899999999999999999999988888887776654432 233468999999999998     79999


Q ss_pred             CcceEEEEEccCceEeeee-----ecc---CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE
Q 022184          222 DKALLAVYDISTWNKIGHK-----RLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~~~~~-----~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~  293 (301)
                      .||.|++||..++..+...     ...   ..-|+++.|-.++ .|++|...|.|.+||...+.+++.. ..| ...|.+
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~-~~h-~adVl~  250 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSH-SCH-DADVLA  250 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhh-hhh-hcceeE
Confidence            9999999999988776521     111   1235666665554 7999999999999999999999887 577 888999


Q ss_pred             EEEccCC
Q 022184          294 VEFCPTQ  300 (301)
Q Consensus       294 ~~~spdg  300 (301)
                      ++-++++
T Consensus       251 Lav~~~~  257 (691)
T KOG2048|consen  251 LAVADNE  257 (691)
T ss_pred             EEEcCCC
Confidence            9988774

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.91  E-value=2.7e-22  Score=147.51  Aligned_cols=261  Identities=17%  Similarity=0.183  Sum_probs=182.6

Q ss_pred             ceeEEEeeeecCCCccEEEecCCcc-ccCCcCceeEeeeCCCcceeeeCC-ceecccc-ccCCcceEEEECCCCCeEEEE
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSR-ASSSPSVLEIFSFDPKTTSVYTSP-LVTYVFD-ESEGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~-~h~~~v~~~~~~~~~~~l~~~   81 (301)
                      +.|..++=+|.  +..++++-.... .++.--.+.||.+..+-......+ .....+. .+-+.|.|+.|.|++..+++-
T Consensus        64 gEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm  141 (370)
T KOG1007|consen   64 GEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM  141 (370)
T ss_pred             cceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence            55666666643  345555433211 112233467888865544322221 1122333 456689999999999999987


Q ss_pred             ecCCcEEEEEEcCCccc-cccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCcceecccccCC-ccE
Q 022184           82 TTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSV  157 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i  157 (301)
                      . |..|.+|+++..... ..+..  .....+....++-+|+|  +++.+++.+ |+++..||+++.+....+...+ ..+
T Consensus       142 ~-dn~i~l~~l~ess~~vaev~s--s~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~v  217 (370)
T KOG1007|consen  142 D-DNNIVLWSLDESSKIVAEVLS--SESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRV  217 (370)
T ss_pred             c-cCceEEEEcccCcchheeecc--cccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhccee
Confidence            5 777999999877652 22221  12222455678889999  788887766 8999999999888776665444 579


Q ss_pred             EEEEecCCCc-EEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-
Q 022184          158 LDMDFSLDSE-FLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-  234 (301)
Q Consensus       158 ~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-  234 (301)
                      ..+.|+|+-+ +|++|++||.|++||+|.-+ ++..+.. |...+.++.|+|....+    +++++.|..|.+|....- 
T Consensus       218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdqL----iLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQL----ILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC-CceEEEEEEecCccceE----EEecCCCceeEEEeccccc
Confidence            9999999877 68899999999999998755 4455554 45689999999987764    688999999999965320 


Q ss_pred             ----------------------------eEeeeeeccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCc
Q 022184          235 ----------------------------NKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       235 ----------------------------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~  276 (301)
                                                  ..+..+..|+..|++++||.-. -.+|+-+.||++.|=.+...
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence                                        1134567788899999998754 45677799999998777543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=7.5e-23  Score=160.81  Aligned_cols=247  Identities=16%  Similarity=0.173  Sum_probs=187.1

Q ss_pred             CceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE--ecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS--TTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (301)
Q Consensus        35 ~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  112 (301)
                      ..+++|++......-.    ......  ...+.++.|+.... |+++  +.|..+++|.-..........    ... ..
T Consensus        12 d~~kl~D~s~~~~~~~----~~~~t~--~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~----~k~-~g   79 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSE----YVHQTA--EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRV----RKL-TG   79 (673)
T ss_pred             CceEEeecccccCccc----cccCCC--CCcceeeeccccce-EEEeecCCceeEEEecccCCCCcccee----ecc-cc
Confidence            3568999876543221    111111  22389999987654 4443  467788888765542211111    111 11


Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL  192 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  192 (301)
                      ..-.|++......++++|+..+.|+|||++.....+.+..|++.|+++.++-...+||+++..|.|.|..+.++.....+
T Consensus        80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f  159 (673)
T KOG4378|consen   80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF  159 (673)
T ss_pred             chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence            23445555555689999999999999999977777778888899999999999999999999999999999999888888


Q ss_pred             eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee-eeccCCCcEEEEEcCC-CCEEEEeeCCCcEEE
Q 022184          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLD-GKYLAMGSKDGDICV  270 (301)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i  270 (301)
                      ....+..++-+.|+|..+++    +.+++++|.|.+||+....++.. ...|..+...++|+|. ..+|++.+.|.+|.+
T Consensus       160 ~~~sgqsvRll~ys~skr~l----L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~  235 (673)
T KOG4378|consen  160 TIDSGQSVRLLRYSPSKRFL----LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI  235 (673)
T ss_pred             ecCCCCeEEEeeccccccee----eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence            87766678899999998874    68889999999999988776543 4678899999999994 578888999999999


Q ss_pred             EeCCCceeeccccccccCccEEEEEEccCC
Q 022184          271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      ||.........+..   ..+.+.++|+++|
T Consensus       236 yD~~s~~s~~~l~y---~~Plstvaf~~~G  262 (673)
T KOG4378|consen  236 YDIRSQASTDRLTY---SHPLSTVAFSECG  262 (673)
T ss_pred             eecccccccceeee---cCCcceeeecCCc
Confidence            99998776665533   5689999999998

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=5.7e-23  Score=159.68  Aligned_cols=209  Identities=16%  Similarity=0.156  Sum_probs=162.4

Q ss_pred             cccccCCcceEEEECCCC--CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCC
Q 022184           58 VFDESEGDPMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDG  134 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~--~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg  134 (301)
                      +..-+.++|++++|+|..  +.+|+|+.-|+|-+||+.+.+....   .......|..+|.++.|+| +-..+++.+.||
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---ceEEeccCCccccceEecCCChhheeeeccCc
Confidence            345678999999999954  4778888889999999963332111   1123345788999999999 567899999999


Q ss_pred             eEEEEeCCCcce--ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-EEEEeecCCCCeeEEEEccCCCc
Q 022184          135 HLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       135 ~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      +|+.-|++.+..  +.........+.++.|+.+...++++..=|...+||++++.. ...+..|. ..|..++++|...+
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~-kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK-KKITSVALNPVCPW  336 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh-cccceeecCCCCch
Confidence            999999987643  233322334678888998888888888778999999998766 44444443 47999999999887


Q ss_pred             ceEEEEEEeCCcceEEEEEccCceEe----eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      .    +++++.|++++|||++.....    -....|...|.+..|||.+-.|++.+.|..|+|||..
T Consensus       337 ~----laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  337 F----LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             h----eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            4    689999999999999864332    2345678899999999988779999999999999984

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=3.1e-22  Score=149.59  Aligned_cols=276  Identities=12%  Similarity=0.124  Sum_probs=189.8

Q ss_pred             CCCCceeEEEeeeecCC--CccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC----
Q 022184            1 MEGGGTVTCGSWIKRPE--NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----   74 (301)
Q Consensus         1 ~~~~~~v~~~~w~~~~~--~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----   74 (301)
                      |+.+.+|+.++|++--.  ....+|+.|+.       .+.+|....+...-..+   ...-..|......++|+-+    
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-------rvtiy~c~~d~~ir~lq---~y~D~d~~Esfytcsw~yd~~~~  104 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-------RVTIYECPGDGGIRLLQ---SYADEDHDESFYTCSWSYDSNTG  104 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCc-------EEEEEEECCccceeeee---eccCCCCCcceEEEEEEecCCCC
Confidence            45678999999984322  23566665543       34677776655211111   1112347778888998653    


Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceeccc---
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE---  150 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~---  150 (301)
                      ..++|+++.-|.|+|.|+.+++..       .....|...|+.+.+.| +.+++++++.|..|++|++++..++..+   
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~-------~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~  177 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCS-------KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV  177 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhc-------cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence            448899999999999999988763       23345788999999999 4578999999999999999999887654   


Q ss_pred             ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee---------------------------cCCCCeeEE
Q 022184          151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---------------------------NSDEKIELC  203 (301)
Q Consensus       151 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------------------------~~~~~v~~~  203 (301)
                      .+|.+.|.++.|+++|.+|++++.|.++++|++...+....+..                           -|...|.|+
T Consensus       178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv  257 (385)
T KOG1034|consen  178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV  257 (385)
T ss_pred             ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence            56778999999999999999999999999999984332111110                           011123333


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEccC-ceE-------------eeeeeccCCCcEEEEE--cCCCCEEEEeeCCCc
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNK-------------IGHKRLLRKPASVLSI--SLDGKYLAMGSKDGD  267 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~-------------~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~  267 (301)
                      .|--  ++     +++-+-++.|..|.... .+.             +..+......++-+.|  +|-+++||.|...|.
T Consensus       258 rw~g--d~-----ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~  330 (385)
T KOG1034|consen  258 RWFG--DF-----ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGK  330 (385)
T ss_pred             HHHh--hh-----eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCc
Confidence            3322  22     56667778999998721 111             2233333445565554  566899999999999


Q ss_pred             EEEEeCCCceeeccc---cccccCccEEEEEEccCCC
Q 022184          268 ICVVDVKKMEINHWS---KRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       268 i~i~~~~~~~~~~~~---~~~~~~~~v~~~~~spdg~  301 (301)
                      |++||++..++....   .... ...|...+|+.||.
T Consensus       331 v~vwdL~~~ep~~~ttl~~s~~-~~tVRQ~sfS~dgs  366 (385)
T KOG1034|consen  331 VYVWDLDNNEPPKCTTLTHSKS-GSTVRQTSFSRDGS  366 (385)
T ss_pred             EEEEECCCCCCccCceEEeccc-cceeeeeeecccCc
Confidence            999999987653221   1112 56799999999874

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=5.2e-22  Score=164.79  Aligned_cols=202  Identities=18%  Similarity=0.204  Sum_probs=173.3

Q ss_pred             cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC
Q 022184           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~  141 (301)
                      -...+++++.++.|++.+.|...|.|-+|+++++.....+.    ....|.++|++++...-++.+++++.+|.+++||.
T Consensus       447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~----~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f  522 (910)
T KOG1539|consen  447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG----DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF  522 (910)
T ss_pred             cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc----cCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence            35679999999999999999999999999999886533321    22358899999999888899999999999999999


Q ss_pred             CCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                      .....+..+ .-...+.++..+.....++.+..|-.|+++|..+.+.++.+.+|. ..+++++|||||++     +++++
T Consensus       523 ~~k~l~~~l-~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~-nritd~~FS~DgrW-----lisas  595 (910)
T KOG1539|consen  523 KKKVLKKSL-RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG-NRITDMTFSPDGRW-----LISAS  595 (910)
T ss_pred             CCcceeeee-ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc-cceeeeEeCCCCcE-----EEEee
Confidence            887765544 334578888899888899999999999999999999999998765 47999999999999     89999


Q ss_pred             CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC-CcEEEEeCCC
Q 022184          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-GDICVVDVKK  275 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~i~i~~~~~  275 (301)
                      .|++|++||+.++..+..+. ...++.++.|||+|.+||+...| .-|++|.-.+
T Consensus       596 mD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  596 MDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             cCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            99999999999999886654 36788999999999999999888 6699997654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=3.9e-21  Score=151.45  Aligned_cols=226  Identities=16%  Similarity=0.194  Sum_probs=174.2

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      .....+|.+....++.+|+.+++++++.|+.+++|+  ..+.....        ....++.|+.|+|.| .++.|...|.
T Consensus       361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~--------~~~d~~~~~~fhpsg-~va~Gt~~G~  429 (626)
T KOG2106|consen  361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK--------IIEDPAECADFHPSG-VVAVGTATGR  429 (626)
T ss_pred             eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE--------EecCceeEeeccCcc-eEEEeeccce
Confidence            344568889999999999999999999999999999  33322111        134678999999999 9999999999


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      ..+.|.++...+..... ..++..++|+|+|.+||.|+.|+.|+||.+... .........+..+|+.+.||+|+++   
T Consensus       430 w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~---  505 (626)
T KOG2106|consen  430 WFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF---  505 (626)
T ss_pred             EEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce---
Confidence            99999998665544433 779999999999999999999999999998754 4444444455578999999999998   


Q ss_pred             EEEEEeCCcceEEEEEccCceEeeee------------------eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          215 FCTVQRGDKALLAVYDISTWNKIGHK------------------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~~~~~------------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                        +.+.+.|..|..|.....+.+...                  ..+...+..++-+.+.+++|+|...|+|++|...-.
T Consensus       506 --~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~  583 (626)
T KOG2106|consen  506 --LVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS  583 (626)
T ss_pred             --EEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC
Confidence              788888999999954322211111                  122345666777888899999999999999998654


Q ss_pred             eeec--cccccccCccEEEEEEccC
Q 022184          277 EINH--WSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       277 ~~~~--~~~~~~~~~~v~~~~~spd  299 (301)
                      +...  ....+| ++.|++++|..+
T Consensus       584 s~rA~~he~~gh-s~~vt~V~Fl~~  607 (626)
T KOG2106|consen  584 SPRAPSHEYGGH-SSHVTNVAFLCK  607 (626)
T ss_pred             CCcccceeeccc-cceeEEEEEeeC
Confidence            3332  223678 899999999764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=1.7e-21  Score=145.48  Aligned_cols=247  Identities=15%  Similarity=0.184  Sum_probs=178.3

Q ss_pred             CCCCceeEEEeeeecC----CCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCC---cceEEEECC
Q 022184            1 MEGGGTVTCGSWIKRP----ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNP   73 (301)
Q Consensus         1 ~~~~~~v~~~~w~~~~----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~   73 (301)
                      |..+..|+..+|.+.-    ...+++|+..      .++-|.+|+.-...  +..    ....-.|.+   ...+++|+|
T Consensus       101 ~~eg~tvydy~wYs~M~s~qP~t~l~a~ss------r~~PIh~wdaftG~--lra----Sy~~ydh~de~taAhsL~Fs~  168 (406)
T KOG2919|consen  101 YQEGETVYDYCWYSRMKSDQPSTNLFAVSS------RDQPIHLWDAFTGK--LRA----SYRAYDHQDEYTAAHSLQFSP  168 (406)
T ss_pred             eccCCEEEEEEeeeccccCCCccceeeecc------ccCceeeeeccccc--ccc----chhhhhhHHhhhhheeEEecC
Confidence            3457789999998432    1245666644      56667888764332  211    111222333   356899999


Q ss_pred             CCCeEEEEecCCcEEEEEEc-CCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccc
Q 022184           74 SGDDFVCSTTNGGCKLFEVY-GGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (301)
Q Consensus        74 ~~~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  151 (301)
                      ||.+|++| ....|++||+. .+.............+...+-+.+++|+| +.+.++.++....+-||.-..+.++..+.
T Consensus       169 DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg  247 (406)
T KOG2919|consen  169 DGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG  247 (406)
T ss_pred             CCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec
Confidence            99999986 56679999994 33332221111111223357789999999 66789999999999999888888888888


Q ss_pred             cCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCC-ceEEEEeecCCCCeeEE--EEccCCCcceEEEEEEeCCcceEE
Q 022184          152 KAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VAWTFLTRNSDEKIELC--RFSKDGTKPFLFCTVQRGDKALLA  227 (301)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~i~  227 (301)
                      +|.+.|+.+.|.++|+.|++|+ .|..|..||+|.. .++..+..+....-..+  ...|+++.     +++++.+|.|+
T Consensus       248 gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~-----LasG~tdG~V~  322 (406)
T KOG2919|consen  248 GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEI-----LASGDTDGSVR  322 (406)
T ss_pred             ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCce-----eeccCCCccEE
Confidence            8999999999999999999988 4778999999864 44455554443223344  44678887     78999999999


Q ss_pred             EEEccC-ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC
Q 022184          228 VYDIST-WNKIGHKRLLRKPASVLSISLDGKYLAMGSKD  265 (301)
Q Consensus       228 ~~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  265 (301)
                      +||+++ +..+..+..+...++.++++|--.++|+++..
T Consensus       323 vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  323 VWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             EEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            999998 66677777788899999999998888888764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=1e-21  Score=146.88  Aligned_cols=245  Identities=14%  Similarity=0.147  Sum_probs=174.5

Q ss_pred             CceeEEEeeeecCCC-ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC-CeEEEE
Q 022184            4 GGTVTCGSWIKRPEN-VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCS   81 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~-~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~   81 (301)
                      ...-+-|+|+-+... .-++|+||      ..|.|+|.++....  +      ...+.+|...|+.+.++|+. ++++++
T Consensus        89 ~Esfytcsw~yd~~~~~p~la~~G------~~GvIrVid~~~~~--~------~~~~~ghG~sINeik~~p~~~qlvls~  154 (385)
T KOG1034|consen   89 DESFYTCSWSYDSNTGNPFLAAGG------YLGVIRVIDVVSGQ--C------SKNYRGHGGSINEIKFHPDRPQLVLSA  154 (385)
T ss_pred             CcceEEEEEEecCCCCCeeEEeec------ceeEEEEEecchhh--h------ccceeccCccchhhhcCCCCCcEEEEe
Confidence            445678899988764 45666665      44556776654332  2      34578999999999999965 578899


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecc------------
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD------------  149 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~------------  149 (301)
                      +.|..|++|++++..+...+    -....|.+.|.++.|+++|.+|++++.|.++++|+++..+....            
T Consensus       155 SkD~svRlwnI~~~~Cv~Vf----GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t  230 (385)
T KOG1034|consen  155 SKDHSVRLWNIQTDVCVAVF----GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT  230 (385)
T ss_pred             cCCceEEEEeccCCeEEEEe----cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence            99999999999998774433    23345889999999999999999999999999999973221100            


Q ss_pred             ----------------cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeC-CCCceEEE-------------EeecCCCC
Q 022184          150 ----------------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVAWTF-------------LTRNSDEK  199 (301)
Q Consensus       150 ----------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~-------------~~~~~~~~  199 (301)
                                      ..-|...|.|+.|-  |+++++-+-++.|..|.. +-++.+..             +.-+ ...
T Consensus       231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~-~c~  307 (385)
T KOG1034|consen  231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP-MCD  307 (385)
T ss_pred             cCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC-ccc
Confidence                            01133345555554  678999898999999987 22222111             1111 112


Q ss_pred             eeEE--EEccCCCcceEEEEEEeCCcceEEEEEccCceEee--ee--eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          200 IELC--RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HK--RLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       200 v~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                      +.-+  +|.|-++.     ++.+...|.|.+||++..++..  ++  ......|+..+||.||..|+..+.|+.|.-||.
T Consensus       308 iWfirf~~d~~~~~-----la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  308 IWFIRFAFDPWQKM-----LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             eEEEEEeecHHHHH-----HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            4444  45566665     6889999999999999876631  11  122357899999999999999999999999985


Q ss_pred             C
Q 022184          274 K  274 (301)
Q Consensus       274 ~  274 (301)
                      .
T Consensus       383 v  383 (385)
T KOG1034|consen  383 V  383 (385)
T ss_pred             e
Confidence            3

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=2.5e-21  Score=157.66  Aligned_cols=262  Identities=13%  Similarity=0.163  Sum_probs=189.0

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ..|+.++|-||   +..++++.++         +++.||++.+.+      ...+++|.+.|++++|+.||+++|+|+.|
T Consensus        13 hci~d~afkPD---GsqL~lAAg~---------rlliyD~ndG~l------lqtLKgHKDtVycVAys~dGkrFASG~aD   74 (1081)
T KOG1538|consen   13 HCINDIAFKPD---GTQLILAAGS---------RLLVYDTSDGTL------LQPLKGHKDTVYCVAYAKDGKRFASGSAD   74 (1081)
T ss_pred             cchheeEECCC---CceEEEecCC---------EEEEEeCCCccc------ccccccccceEEEEEEccCCceeccCCCc
Confidence            35788999988   3333332211         678888877655      45689999999999999999999999999


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecC
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~  164 (301)
                      ..|.+|+.+-..         .-...|...|.|+.|+|-...|++++-+ ..-+|....... .+ ......+.+.+|+.
T Consensus        75 K~VI~W~~klEG---------~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K-~kss~R~~~CsWtn  142 (1081)
T KOG1538|consen   75 KSVIIWTSKLEG---------ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SK-HKSSSRIICCSWTN  142 (1081)
T ss_pred             eeEEEecccccc---------eeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-Hh-hhhheeEEEeeecC
Confidence            999999975332         2234588999999999988889988753 356777544332 11 12335789999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEe--ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          165 DSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       165 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      ||++|+.|-.+|+|.+-+- +++....+.  +....+|.+++|+|....-..-.++......++..|.+. |+.+..-+.
T Consensus       143 DGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~  220 (1081)
T KOG1538|consen  143 DGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA  220 (1081)
T ss_pred             CCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc
Confidence            9999999999999999864 444444443  345568999999997542111124555666677777665 444444444


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+-...++++-++|.++..|+.|+.+++|.-+ |-.+-++ ... ...|+.++..|+|+
T Consensus       221 L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTv-g~~-D~WIWtV~~~PNsQ  276 (1081)
T KOG1538|consen  221 LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTV-GEQ-DSWIWTVQAKPNSQ  276 (1081)
T ss_pred             CCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeec-ccc-ceeEEEEEEccCCc
Confidence            45566789999999999999999999999854 4434333 223 67899999999885

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.89  E-value=1.7e-21  Score=162.21  Aligned_cols=218  Identities=17%  Similarity=0.175  Sum_probs=149.5

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCC
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDG  134 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg  134 (301)
                      +..|...+.+++|+|||++|+.++.+   ..|++||+.+++...      ....  .+....++|+|||+.|+.+. .+|
T Consensus       199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------l~~~--~g~~~~~~wSPDG~~La~~~~~~g  270 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------VASF--RGHNGAPAFSPDGSRLAFASSKDG  270 (429)
T ss_pred             eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------EecC--CCccCceeECCCCCEEEEEEecCC
Confidence            45677889999999999999987654   369999998764311      1111  12234689999999888765 577


Q ss_pred             eEEEE--eCCCcceecccccCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCC
Q 022184          135 HLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGT  210 (301)
Q Consensus       135 ~i~v~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~  210 (301)
                      .+.||  |+.+++. ..+..+...+..+.|+|||+.|+..+ .++...||++... .....+ .+ ..  ....|+|+|+
T Consensus       271 ~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~~--~~~~~SpDG~  345 (429)
T PRK01742        271 VLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-RG--YSAQISADGK  345 (429)
T ss_pred             cEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-CC--CCccCCCCCC
Confidence            65555  6655554 44555556778899999999877655 5788888876532 222222 22 22  4578999999


Q ss_pred             cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC--CceeeccccccccC
Q 022184          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK--KMEINHWSKRLHLG  288 (301)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~--~~~~~~~~~~~~~~  288 (301)
                      .     ++..+.+ .+.+||+.+++.......  .....+.|+|||++|++++.++.+.+|.+.  ++...+.+ ..| .
T Consensus       346 ~-----ia~~~~~-~i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l-~~~-~  415 (429)
T PRK01742        346 T-----LVMINGD-NVVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL-PGS-D  415 (429)
T ss_pred             E-----EEEEcCC-CEEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-cCC-C
Confidence            7     3334444 466699988765422222  233567899999999999999988887753  46656555 456 6


Q ss_pred             ccEEEEEEccC
Q 022184          289 TSIALVEFCPT  299 (301)
Q Consensus       289 ~~v~~~~~spd  299 (301)
                      +.+..++|+|-
T Consensus       416 g~~~~p~wsp~  426 (429)
T PRK01742        416 GQVKFPAWSPY  426 (429)
T ss_pred             CCCCCcccCCC
Confidence            77899999984

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.89  E-value=4.5e-21  Score=141.27  Aligned_cols=250  Identities=15%  Similarity=0.207  Sum_probs=181.2

Q ss_pred             CCCceeEEEeeeecCCC--ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCc-eeccccccCCcceEEEECC-CCCe
Q 022184            2 EGGGTVTCGSWIKRPEN--VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPL-VTYVFDESEGDPMTIAVNP-SGDD   77 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~--~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~-~~~~   77 (301)
                      +...|++-+.|.|++.+  ..++|+        +...+++|+...+...+..... ....-..+..++++..|+. +-++
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLAT--------s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~  165 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLAT--------SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL  165 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhc--------ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence            45678999999999743  456665        5567899999876554433221 1223345678899999988 6678


Q ss_pred             EEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC-CEEEEeecCCeEEEEeCCCcceecc---cccC
Q 022184           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILD---EPKA  153 (301)
Q Consensus        78 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~---~~~~  153 (301)
                      +.+++-|.+..|||++.+... .   ...+.+.|..+|..++|...+ +.+++.+.||.+++||++..+....   -...
T Consensus       166 igtSSiDTTCTiWdie~~~~~-~---vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~  241 (364)
T KOG0290|consen  166 IGTSSIDTTCTIWDIETGVSG-T---VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP  241 (364)
T ss_pred             eEeecccCeEEEEEEeecccc-c---eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence            889999999999999987220 0   013445688999999999854 4689999999999999987654322   2233


Q ss_pred             CccEEEEEecC-CCcEEEEEeCC-CcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          154 HKSVLDMDFSL-DSEFLATTSTD-GSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       154 ~~~i~~~~~~~-~~~~l~~~~~d-~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                      ..+...++|++ |-+++|+-..| ..|.+.|+|.. .++..+..| ...|+.++|.|.....    +.++++|.++.+||
T Consensus       242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H-~a~VNgIaWaPhS~~h----ictaGDD~qaliWD  316 (364)
T KOG0290|consen  242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH-QASVNGIAWAPHSSSH----ICTAGDDCQALIWD  316 (364)
T ss_pred             CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC-cccccceEecCCCCce----eeecCCcceEEEEe
Confidence            45788999998 55688876655 46999999975 456666655 5579999999987653    79999999999999


Q ss_pred             ccCceE------eeeeeccCCCcEEEEEcC-CCCEEEEeeCCCcEEE
Q 022184          231 ISTWNK------IGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICV  270 (301)
Q Consensus       231 ~~~~~~------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i  270 (301)
                      +.+.-.      +.... .++.|..+.|++ .+.+++.+.. +++.|
T Consensus       317 l~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  317 LQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             cccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            975322      11122 357899999996 5678887764 34444

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.5e-20  Score=138.77  Aligned_cols=209  Identities=16%  Similarity=0.154  Sum_probs=155.0

Q ss_pred             eEEEEecCCcEEEEEEcCCc----ccccc-ccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc
Q 022184           77 DFVCSTTNGGCKLFEVYGGA----TDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~----~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  151 (301)
                      .|++|+....|.-+++....    ...+. .........|.+++++++.  ++.++++|+.|-+|+|||++....+..+.
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence            36677777777777665332    00111 1112233357789999988  58899999999999999999998888888


Q ss_pred             cCCccEEEEEecCCCc--EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184          152 KAHKSVLDMDFSLDSE--FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (301)
Q Consensus       152 ~~~~~i~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (301)
                      .|.+.|+++.|.++-.  .|++|+.||.|.+|+....+.+..++.|.. .|+.++.+|.++.     .++.+.|+.+++|
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KL-----ALsVg~D~~lr~W  154 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKL-----ALSVGGDQVLRTW  154 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCce-----EEEEcCCceeeee
Confidence            9999999999998765  899999999999999999999999988766 4999999999997     7888999999999


Q ss_pred             EccCceEeeeeeccCCCcEEEEEcC---------------------------------------CCCEEEEeeCCCcEEE
Q 022184          230 DISTWNKIGHKRLLRKPASVLSISL---------------------------------------DGKYLAMGSKDGDICV  270 (301)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~s~---------------------------------------~~~~l~~~~~d~~i~i  270 (301)
                      |+-.++.-..... ....+.+.|+|                                       ++..|++|+.|+.|.+
T Consensus       155 NLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~  233 (362)
T KOG0294|consen  155 NLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISL  233 (362)
T ss_pred             hhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEE
Confidence            9876543211111 11111123333                                       3456777888888888


Q ss_pred             EeCCCceeeccccccccCccEEEEEE
Q 022184          271 VDVKKMEINHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~v~~~~~  296 (301)
                      ||.++..+...+ .+| ...|.++.+
T Consensus       234 ~D~ds~~~~~~~-~AH-~~RVK~i~~  257 (362)
T KOG0294|consen  234 KDTDSDTPLTEF-LAH-ENRVKDIAS  257 (362)
T ss_pred             eccCCCccceee-ecc-hhheeeeEE
Confidence            888876666655 577 777777763

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=6.3e-20  Score=132.10  Aligned_cols=245  Identities=11%  Similarity=0.109  Sum_probs=172.1

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee--CCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      .|++-+|+|.   .++++.|.      ..+.|.++.+..-......  ........++|.++|+.++|+  .++|+++ .
T Consensus        12 tvf~qa~sp~---~~~l~agn------~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-g   79 (325)
T KOG0649|consen   12 TVFAQAISPS---KQYLFAGN------LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-G   79 (325)
T ss_pred             HHHHHhhCCc---ceEEEEec------CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-c
Confidence            4667788877   67777766      6677788877653322211  112233458999999999997  4567766 4


Q ss_pred             CCcEEEEEEcCCccc---cccccccCCCC----CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCcc
Q 022184           84 NGGCKLFEVYGGATD---INLLAKKMPPL----QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS  156 (301)
Q Consensus        84 d~~i~~w~~~~~~~~---~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  156 (301)
                      ||.|+-|........   ..++. .....    ..-..|+++...|..+.++.++.|+.++-||+++|+..+.+.+|.+.
T Consensus        80 dG~V~gw~W~E~~es~~~K~lwe-~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY  158 (325)
T KOG0649|consen   80 DGLVYGWEWNEEEESLATKRLWE-VKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY  158 (325)
T ss_pred             CceEEEeeehhhhhhccchhhhh-hcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence            599999988654331   11111 11111    12257899999997766777778999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC---------CCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---------DEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (301)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (301)
                      +.++.--.....+++|+.||++++||+++++.+..+....         +..|.+++-  +..+      ...+....+.
T Consensus       159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edW------lvCGgGp~ls  230 (325)
T KOG0649|consen  159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDW------LVCGGGPKLS  230 (325)
T ss_pred             eeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCce------EEecCCCcee
Confidence            9999885555679999999999999999999888774321         222344433  3343      3344556799


Q ss_pred             EEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      +|.++..++...+. ...++..+.|..|  .+++++..+.|.-|.+.
T Consensus       231 lwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  231 LWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             EEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec
Confidence            99999988776554 3566777888544  67778777788888874

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.88  E-value=1.3e-21  Score=158.48  Aligned_cols=240  Identities=13%  Similarity=0.147  Sum_probs=171.5

Q ss_pred             CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC
Q 022184           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (301)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  110 (301)
                      +..+.|-||+++..+.-- .. .....  -....|+.+.|.| |..+||+++.||.|++|.+..+...............
T Consensus       600 g~gG~iai~el~~PGrLP-Dg-v~p~l--~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~  675 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLP-DG-VMPGL--FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI  675 (1012)
T ss_pred             CCCceEEEEEcCCCCCCC-cc-ccccc--ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec
Confidence            356677888886544211 11 00111  1245699999999 7789999999999999999987765555544444455


Q ss_pred             CCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-
Q 022184          111 DAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-  188 (301)
Q Consensus       111 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-  188 (301)
                      |...|+++.|+| ..+.|++++.|.+|++||+.+++...++.+|.+.|.+++|+|+|+.+++.+.||+|++|..++++. 
T Consensus       676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP  755 (1012)
T ss_pred             ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence            788999999999 667899999999999999999999889999999999999999999999999999999999987653 


Q ss_pred             EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce--EeeeeeccC-CCcEEEEEcCCC-CEEEEeeC
Q 022184          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLR-KPASVLSISLDG-KYLAMGSK  264 (301)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~-~~v~~~~~s~~~-~~l~~~~~  264 (301)
                      ++.-.+..+.+-..+.|.-+|+++ +...+......+|.+||..+-.  ++......- -.+.-..+.+|. -++++|-.
T Consensus       756 v~Eg~gpvgtRgARi~wacdgr~v-iv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKG  834 (1012)
T KOG1445|consen  756 VYEGKGPVGTRGARILWACDGRIV-IVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKG  834 (1012)
T ss_pred             cccCCCCccCcceeEEEEecCcEE-EEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCC
Confidence            333333334445678899999973 2222333455778899876533  221111111 111222455664 46677888


Q ss_pred             CCcEEEEeCCCc
Q 022184          265 DGDICVVDVKKM  276 (301)
Q Consensus       265 d~~i~i~~~~~~  276 (301)
                      |..|.+|++-..
T Consensus       835 D~~v~~yEv~~e  846 (1012)
T KOG1445|consen  835 DRFVNMYEVIYE  846 (1012)
T ss_pred             CceEEEEEecCC
Confidence            999999998543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.3e-21  Score=157.15  Aligned_cols=227  Identities=19%  Similarity=0.223  Sum_probs=171.4

Q ss_pred             eeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC--EEEEeec
Q 022184           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGV  132 (301)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~  132 (301)
                      ....+.+|++.|.++...|.|.+|++|+.||++++|.+.++.+....        .-.+.|.|++|+|.++  .||++- 
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--------~~d~~I~~vaw~P~~~~~vLAvA~-  462 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--------QFDSEIRSVAWNPLSDLCVLAVAV-  462 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--------eecceeEEEEecCCCCceeEEEEe-
Confidence            34578999999999999999999999999999999999999874333        2346899999999654  344443 


Q ss_pred             CCeEEEEeCCCcc-------------------------------------eecccccCCccEEEEEecCCCcEEEEEeCC
Q 022184          133 DGHLRIMHWPSLR-------------------------------------IILDEPKAHKSVLDMDFSLDSEFLATTSTD  175 (301)
Q Consensus       133 dg~i~v~d~~~~~-------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  175 (301)
                      ...+.+.+..-|.                                     -+.....|...|..+.|+..|.||++...+
T Consensus       463 ~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~  542 (733)
T KOG0650|consen  463 GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD  542 (733)
T ss_pred             cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC
Confidence            3334444421110                                     011223456789999999999999998754


Q ss_pred             ---CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEE
Q 022184          176 ---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI  252 (301)
Q Consensus       176 ---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  252 (301)
                         ..|.|+++........+... .+.+.++.|+|...++|     .+ ....|++||+..++.+..+...-..|..++.
T Consensus       543 ~~~~~VliHQLSK~~sQ~PF~ks-kG~vq~v~FHPs~p~lf-----Va-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msi  615 (733)
T KOG0650|consen  543 SGNKSVLIHQLSKRKSQSPFRKS-KGLVQRVKFHPSKPYLF-----VA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSI  615 (733)
T ss_pred             CCcceEEEEecccccccCchhhc-CCceeEEEecCCCceEE-----EE-eccceEEEehhHHHHHHHHhcCCeeeeeeee
Confidence               46899999877665555433 34699999999988732     22 2557999999988777766666678999999


Q ss_pred             cCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          253 SLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       253 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      +|.|..|+.++.|+++..||+.-..........| ...+++++|++
T Consensus       616 hp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~  660 (733)
T KOG0650|consen  616 HPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHK  660 (733)
T ss_pred             cCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhcc
Confidence            9999999999999999999998664444333667 88888888876

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.1e-21  Score=156.30  Aligned_cols=244  Identities=15%  Similarity=0.128  Sum_probs=175.0

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccc---cccCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL---AKKMPPL  109 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~---~~~~~~~  109 (301)
                      .++++++|.+......-........++.+|.++|.|+++.++++.+++|+.||+|+.|++....-.....   ...-...
T Consensus       314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~  393 (577)
T KOG0642|consen  314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL  393 (577)
T ss_pred             cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence            7889999999332222112334467899999999999999999999999999999999876332211111   1112344


Q ss_pred             CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc--cCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCC
Q 022184          110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDG  186 (301)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~  186 (301)
                      .|.+.+..+++|+....|++++.||+++.|+.....+ ..+.  ..++....+++-... .+.++...-+.-.++++...
T Consensus       394 Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~  472 (577)
T KOG0642|consen  394 GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV  472 (577)
T ss_pred             ccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh
Confidence            6788999999999888999999999999999765554 2222  222344566665332 22333223333334444444


Q ss_pred             ceEEEEeecC------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEE
Q 022184          187 VAWTFLTRNS------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (301)
Q Consensus       187 ~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  260 (301)
                      .....+....      ...+..+.+.|.+..     .+++..|+.|+++|..+++.+.....|...++++++.|+|.+|+
T Consensus       473 s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~-----~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~  547 (577)
T KOG0642|consen  473 SDLLIFESSASPGPRRYPQINKVVSHPTADI-----TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLM  547 (577)
T ss_pred             hheeeccccCCCcccccCccceEEecCCCCe-----eEecccCCceecccccccccchheeeccceecceeecCCCceEE
Confidence            4443332111      124677888998876     68899999999999999999999999999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCceeeccc
Q 022184          261 MGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       261 ~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      +++.|+.+++|.+.........
T Consensus       548 s~s~d~sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  548 SGSHDGSVRLWKLDVKTCVLES  569 (577)
T ss_pred             eecCCceeehhhccchheeecc
Confidence            9999999999999776655443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=6.1e-20  Score=148.53  Aligned_cols=254  Identities=10%  Similarity=0.079  Sum_probs=174.5

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~   81 (301)
                      ..+.|+.+.|.|.   ...++...      .|.+++.|++....-.  .    ...+.||.+.|.+++|.|... .|++|
T Consensus        99 H~nAifDl~wapg---e~~lVsas------GDsT~r~Wdvk~s~l~--G----~~~~~GH~~SvkS~cf~~~n~~vF~tG  163 (720)
T KOG0321|consen   99 HKNAIFDLKWAPG---ESLLVSAS------GDSTIRPWDVKTSRLV--G----GRLNLGHTGSVKSECFMPTNPAVFCTG  163 (720)
T ss_pred             ccceeEeeccCCC---ceeEEEcc------CCceeeeeeeccceee--c----ceeecccccccchhhhccCCCcceeec
Confidence            4567899999973   44555543      4556699988654421  1    124679999999999999554 78899


Q ss_pred             ecCCcEEEEEEcCCcccc------ccc----c----------ccCCCCCCCCCeeE---EEEeeCCCEEEEeec-CCeEE
Q 022184           82 TTNGGCKLFEVYGGATDI------NLL----A----------KKMPPLQDAGPQKC---LSFSVDGSRFAAGGV-DGHLR  137 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~------~~~----~----------~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~  137 (301)
                      ++||.|.|||+.-.....      .+.    .          +......+...|.+   +.+..|...|++++. |+.|+
T Consensus       164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK  243 (720)
T KOG0321|consen  164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK  243 (720)
T ss_pred             cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence            999999999997544200      000    0          00111222334444   556678888999887 99999


Q ss_pred             EEeCCCcceecc--------cccC---CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--eEEEEeecCCCC-eeEE
Q 022184          138 IMHWPSLRIILD--------EPKA---HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDEK-IELC  203 (301)
Q Consensus       138 v~d~~~~~~~~~--------~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~-v~~~  203 (301)
                      |||++.......        +..+   .-.+.++.....|.+|++.+.|+.|..|++..-.  ++..+.++.... ...-
T Consensus       244 VWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks  323 (720)
T KOG0321|consen  244 VWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS  323 (720)
T ss_pred             EEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeee
Confidence            999986554322        1122   1257788888888988888889999999998643  223333222111 1223


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEccCceE-eeeeeccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCc
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~  276 (301)
                      ..+|++.+     +++++.|...++|.+.+.+. ...+.+|...|++++|.|.. .-+++++.|..++||++..+
T Consensus       324 ~lSpd~~~-----l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  324 ELSPDDCS-----LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             ecCCCCce-----EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            46899998     89999999999999987654 44567888899999998842 34677799999999999654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.87  E-value=2e-18  Score=139.66  Aligned_cols=247  Identities=12%  Similarity=0.162  Sum_probs=157.1

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-   83 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-   83 (301)
                      +....++++|+   +++++++..     .++.+.+|+++..+ .+...  ..  . ...+.+..++|+|++++|++++. 
T Consensus        35 ~~~~~l~~spd---~~~lyv~~~-----~~~~i~~~~~~~~g-~l~~~--~~--~-~~~~~p~~i~~~~~g~~l~v~~~~  100 (330)
T PRK11028         35 GQVQPMVISPD---KRHLYVGVR-----PEFRVLSYRIADDG-ALTFA--AE--S-PLPGSPTHISTDHQGRFLFSASYN  100 (330)
T ss_pred             CCCccEEECCC---CCEEEEEEC-----CCCcEEEEEECCCC-ceEEe--ee--e-cCCCCceEEEECCCCCEEEEEEcC
Confidence            34556778866   455555432     35677888887332 22110  01  1 12235678999999998888764 


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCCcceecc-----c-ccCCcc
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILD-----E-PKAHKS  156 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~-----~-~~~~~~  156 (301)
                      ++.|.+|+++........    .....+.....+++++|+++++++++ .++.|.+||+++...+..     . ......
T Consensus       101 ~~~v~v~~~~~~g~~~~~----~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~  176 (330)
T PRK11028        101 ANCVSVSPLDKDGIPVAP----IQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG  176 (330)
T ss_pred             CCeEEEEEECCCCCCCCc----eeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCC
Confidence            789999999743221111    11112334567789999999886655 569999999976332211     0 011235


Q ss_pred             EEEEEecCCCcEEEEEeC-CCcEEEEeCCC--Cc--eEEEEeec-----CCCCeeEEEEccCCCcceEEEEEEeCCcceE
Q 022184          157 VLDMDFSLDSEFLATTST-DGSARIWKTED--GV--AWTFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (301)
Q Consensus       157 i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~~--~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i  226 (301)
                      ...++|+|++++++++.. +++|.+|+++.  ++  .+..+...     .......+.++|+++++|    ++...++.|
T Consensus       177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly----v~~~~~~~I  252 (330)
T PRK11028        177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY----ACDRTASLI  252 (330)
T ss_pred             CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE----EecCCCCeE
Confidence            678999999999888775 89999999973  32  22232211     111233688999999732    233457899


Q ss_pred             EEEEccCce----EeeeeeccCCCcEEEEEcCCCCEEEEeeC-CCcEEEEeCC
Q 022184          227 AVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVK  274 (301)
Q Consensus       227 ~~~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~  274 (301)
                      .+|++....    .+..... ......+.++|+|++|+++.. ++.|.+|+++
T Consensus       253 ~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        253 SVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999986432    2222222 234568999999999998875 8899999875

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.86  E-value=5.3e-20  Score=137.35  Aligned_cols=227  Identities=15%  Similarity=0.195  Sum_probs=168.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..||+|.+|++|   ...+|++.      ..+.+.||......     ......++..|...|+.+.|+|..+.|++++.
T Consensus        10 ~~pitchAwn~d---rt~iAv~~------~~~evhiy~~~~~~-----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~   75 (361)
T KOG1523|consen   10 LEPITCHAWNSD---RTQIAVSP------NNHEVHIYSMLGAD-----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH   75 (361)
T ss_pred             cCceeeeeecCC---CceEEecc------CCceEEEEEecCCC-----CceeceehhhhCcceeEEeecCCCCceeEccC
Confidence            479999999998   67888855      23356777776554     23345678999999999999999999999999


Q ss_pred             CCcEEEEEEc-CCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee----cccccCCccEE
Q 022184           84 NGGCKLFEVY-GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----LDEPKAHKSVL  158 (301)
Q Consensus        84 d~~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~~i~  158 (301)
                      |..-++|... ++.-..     .+..+.++...+++.|+|.++.|++|+....|.||-++..+.-    ..-....+.|+
T Consensus        76 drnayVw~~~~~~~Wkp-----tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~  150 (361)
T KOG1523|consen   76 DRNAYVWTQPSGGTWKP-----TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT  150 (361)
T ss_pred             CCCccccccCCCCeecc-----ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence            9999999984 333222     2334457789999999999999999999999999987654432    11223446799


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEeCCC------------------CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184          159 DMDFSLDSEFLATTSTDGSARIWKTED------------------GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~i~d~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      +++|+|++-+|++|+.|+..+++..--                  |+.+..+. ...+.+..+.|+|+|..     ++-.
T Consensus       151 sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~-----lawv  224 (361)
T KOG1523|consen  151 SLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNR-----LAWV  224 (361)
T ss_pred             eeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCE-----eeEe
Confidence            999999999999999999999997421                  11122222 34557999999999998     7888


Q ss_pred             CCcceEEEEEccCce-EeeeeeccCCCcEEEEEcCC
Q 022184          221 GDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLD  255 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~  255 (301)
                      +.|..+.+-|..... .+.......-+..++.|-.+
T Consensus       225 ~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  225 GHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE  260 (361)
T ss_pred             cCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence            899999999977654 23333333456677776544

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.86  E-value=2.3e-19  Score=149.23  Aligned_cols=258  Identities=13%  Similarity=0.102  Sum_probs=183.9

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC--eEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~   80 (301)
                      ...+|+|+.|+|.  ..+++|.|.      ..|.+.+|+..........  ........|..++..+.|..+..  .+++
T Consensus       241 ~~s~v~~~~f~p~--~p~ll~gG~------y~GqV~lWD~~~~~~~~~s--~ls~~~~sh~~~v~~vvW~~~~~~~~f~s  310 (555)
T KOG1587|consen  241 SPSEVTCLKFCPF--DPNLLAGGC------YNGQVVLWDLRKGSDTPPS--GLSALEVSHSEPVTAVVWLQNEHNTEFFS  310 (555)
T ss_pred             cCCceeEEEeccC--CcceEEeec------cCceEEEEEccCCCCCCCc--ccccccccCCcCeEEEEEeccCCCCceEE
Confidence            3578999999965  366777666      5566788887665543211  11223457899999999976544  4999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCC-----CCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCC---cc-----e
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMP-----PLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS---LR-----I  146 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~---~~-----~  146 (301)
                      ++.||.|..|+++.-..+.........     .......+++++|.+ +...+++|+++|.|.--....   ..     .
T Consensus       311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~  390 (555)
T KOG1587|consen  311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG  390 (555)
T ss_pred             EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence            999999999988765543322211111     112335789999998 677899999999998743322   21     1


Q ss_pred             ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       147 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      ......|.++|+.+.++|-+..++..+.|.+++||... ...++..+..+.. .+++++|||...-+    ++++..+|.
T Consensus       391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpav----F~~~d~~G~  465 (555)
T KOG1587|consen  391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAV----FATVDGDGN  465 (555)
T ss_pred             cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceE----EEEEcCCCc
Confidence            22344567899999999977655554459999999988 6666666655433 59999999998753    577888999


Q ss_pred             EEEEEccCce--EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          226 LAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       226 i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      |.+||+....  ++..........+.+.|+++|+.|++|...|.+++|++..
T Consensus       466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            9999987543  3444444456677888999999999999999999999963

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=4.8e-20  Score=141.19  Aligned_cols=213  Identities=10%  Similarity=0.142  Sum_probs=160.7

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC-CeEEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~   81 (301)
                      ..+||..++|+|.  +...+|.|+      .|.++.||..-.+.... ........|.+|...|.-++|+|.. +.|+++
T Consensus        80 Ht~~vLDi~w~Pf--nD~vIASgS------eD~~v~vW~IPe~~l~~-~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa  150 (472)
T KOG0303|consen   80 HTAPVLDIDWCPF--NDCVIASGS------EDTKVMVWQIPENGLTR-DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA  150 (472)
T ss_pred             ccccccccccCcc--CCceeecCC------CCceEEEEECCCccccc-CcccceEEEeecceeEEEEeecccchhhHhhc
Confidence            4688999999965  356777765      77888999986544322 1223355689999999999999954 478899


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCc-cEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDM  160 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~  160 (301)
                      +.|.+|.+|++.+++.        +..+.|...|.++.|+.||.+|++.+.|..|+|||.++++.+..-..|.+ .-..+
T Consensus       151 g~Dn~v~iWnv~tgea--------li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra  222 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEA--------LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA  222 (472)
T ss_pred             cCCceEEEEeccCCce--------eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence            9999999999999986        33345889999999999999999999999999999999998877766664 44566


Q ss_pred             EecCCCcEEEEEe---CCCcEEEEeCCCCce-EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184          161 DFSLDSEFLATTS---TDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (301)
Q Consensus       161 ~~~~~~~~l~~~~---~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  236 (301)
                      .|-.++..+.||-   .+.++.+||...-+. +..........|.---|.+|.+.+|    +.|-.|+.|+.|.+....+
T Consensus       223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivY----l~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVY----LCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             EEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEE----EEecCCcceEEEEecCCCc
Confidence            6888888444443   467899999765433 2222223344466667888888643    5677899999999876553

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=1.9e-18  Score=139.82  Aligned_cols=253  Identities=10%  Similarity=0.105  Sum_probs=158.5

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      .++.|.+|+++.++ .+.    ....+. +.+.+..++++|++++|++++ .++.|.+|+++.... .....    ....
T Consensus        10 ~~~~I~~~~~~~~g-~l~----~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~----~~~~   78 (330)
T PRK11028         10 ESQQIHVWNLNHEG-ALT----LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAA----ESPL   78 (330)
T ss_pred             CCCCEEEEEECCCC-cee----eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEee----eecC
Confidence            56778999996432 211    111222 345677899999999887664 478899999973211 11111    1112


Q ss_pred             CCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcc-e---ecccccCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCC
Q 022184          112 AGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLR-I---ILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTED  185 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~-~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~  185 (301)
                      ......++|+|+++++++++. ++.|.+|++++.. .   +... .+......++++|+++++++++ .++.|.+||+++
T Consensus        79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            234678999999999888764 7899999986422 1   1111 2223567789999999886555 668999999976


Q ss_pred             CceEE-----EEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC--ce--EeeeeeccC------CCcEEE
Q 022184          186 GVAWT-----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WN--KIGHKRLLR------KPASVL  250 (301)
Q Consensus       186 ~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~--~~~~~~~~~------~~v~~~  250 (301)
                      ...+.     ............++|+|+++++|    ++...++.|.+||+..  ++  .+..+....      .....+
T Consensus       158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly----v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i  233 (330)
T PRK11028        158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY----CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI  233 (330)
T ss_pred             CCcccccCCCceecCCCCCCceEEECCCCCEEE----EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence            33221     11112233467899999999732    3334489999999973  22  222222111      123468


Q ss_pred             EEcCCCCEEEEeeC-CCcEEEEeCCCce-eeccccccccCccEEEEEEccCCC
Q 022184          251 SISLDGKYLAMGSK-DGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       251 ~~s~~~~~l~~~~~-d~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .++|++++++++.. ++.|.+|++.... ................++|+|||+
T Consensus       234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~  286 (330)
T PRK11028        234 HITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK  286 (330)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC
Confidence            89999999999854 6899999986432 111111101022456789999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.86  E-value=5.6e-19  Score=146.86  Aligned_cols=221  Identities=19%  Similarity=0.169  Sum_probs=147.5

Q ss_pred             cccCCcceEEEECCCCCeEEEEec---CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCC-
Q 022184           60 DESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDG-  134 (301)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg-  134 (301)
                      ..+...+.+.+|+|||+.|+..+.   +..|++|++.+++...      +..  ..+....+.|+|||+.|+.. +.+| 
T Consensus       195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~------l~~--~~~~~~~~~~SPDG~~La~~~~~~g~  266 (429)
T PRK03629        195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ------VAS--FPRHNGAPAFSPDGSKLAFALSKTGS  266 (429)
T ss_pred             ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE------ccC--CCCCcCCeEECCCCCEEEEEEcCCCC
Confidence            345678999999999999987643   3578999987765311      111  12334568999999988765 3344 


Q ss_pred             -eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC-Cc--EEEEeCCCCceEEEEeecCCCCeeEEEEccCCC
Q 022184          135 -HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-GS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (301)
Q Consensus       135 -~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (301)
                       .|++||+++++.. .+..+...+....|+|||+.|+..+.+ +.  |.++|+.+++.. .+... ........|+|||+
T Consensus       267 ~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~-~~~~~~~~~SpDG~  343 (429)
T PRK03629        267 LNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWE-GSQNQDADVSSDGK  343 (429)
T ss_pred             cEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecC-CCCccCEEECCCCC
Confidence             5889999887654 344444567889999999988877754 44  555567666543 33322 22356789999999


Q ss_pred             cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCc---EEEEeCCCceeecccccccc
Q 022184          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD---ICVVDVKKMEINHWSKRLHL  287 (301)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---i~i~~~~~~~~~~~~~~~~~  287 (301)
                      .+++  .........|.+||+.+++.. .+.. ........|+|||++|+.++.++.   +.++++..... +.+ ..| 
T Consensus       344 ~Ia~--~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~-~~l-~~~-  416 (429)
T PRK03629        344 FMVM--VSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARL-PAT-  416 (429)
T ss_pred             EEEE--EEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe-EEC-ccC-
Confidence            7321  122223456889999887643 2322 223346789999999999988764   67778754443 334 346 


Q ss_pred             CccEEEEEEcc
Q 022184          288 GTSIALVEFCP  298 (301)
Q Consensus       288 ~~~v~~~~~sp  298 (301)
                      .+.+...+|+|
T Consensus       417 ~~~~~~p~Wsp  427 (429)
T PRK03629        417 DGQVKFPAWSP  427 (429)
T ss_pred             CCCcCCcccCC
Confidence            67889999998

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.1e-19  Score=134.30  Aligned_cols=249  Identities=15%  Similarity=0.193  Sum_probs=161.7

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC-CCeEEEEecC
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTN   84 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d   84 (301)
                      .+..++|++.   ..-+|+++      .|..+++|+-........        -......|++++|-|. +..|+.+++.
T Consensus       100 dlr~~aWhqH---~~~fava~------nddvVriy~ksst~pt~L--------ks~sQrnvtclawRPlsaselavgCr~  162 (445)
T KOG2139|consen  100 DLRGVAWHQH---IIAFAVAT------NDDVVRIYDKSSTCPTKL--------KSVSQRNVTCLAWRPLSASELAVGCRA  162 (445)
T ss_pred             ceeeEeechh---hhhhhhhc------cCcEEEEeccCCCCCcee--------cchhhcceeEEEeccCCcceeeeeecc
Confidence            3567899975   45555554      566678876544221111        1123567999999994 4578888887


Q ss_pred             CcEEEEEEcCCcccccc----ccccCCCC--CCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcceecccccCCccE
Q 022184           85 GGCKLFEVYGGATDINL----LAKKMPPL--QDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKSV  157 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~----~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~i  157 (301)
                      | |.+|.........+.    .....+.+  ..+.+|+++.|++||..+++++. |..|.|||..++..+.-.....+.+
T Consensus       163 g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~  241 (445)
T KOG2139|consen  163 G-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGF  241 (445)
T ss_pred             e-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCce
Confidence            7 999998644332221    11112222  23478999999999999999875 6789999999988765554556789


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc---
Q 022184          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---  234 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---  234 (301)
                      .-+.|+||+.+|+.+.-|+..++|+.....-........ +.|....|+|+|+.+++    +.+....++-......   
T Consensus       242 slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf----~~sgsp~lysl~f~~~~~~  316 (445)
T KOG2139|consen  242 SLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLF----ACSGSPRLYSLTFDGEDSV  316 (445)
T ss_pred             eeEEEcCCCCEEEEecccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEE----EEcCCceEEEEeecCCCcc
Confidence            999999999999999999999999665443333333333 37999999999997532    2222222222111100   


Q ss_pred             -------eE---eeee---------eccCCCcEEEEEcCCCCEEEEeeCCC--------cEEEEeCCCce
Q 022184          235 -------NK---IGHK---------RLLRKPASVLSISLDGKYLAMGSKDG--------DICVVDVKKME  277 (301)
Q Consensus       235 -------~~---~~~~---------~~~~~~v~~~~~s~~~~~l~~~~~d~--------~i~i~~~~~~~  277 (301)
                             +.   +..+         ....+.+.+++|+|.|.+||+.-..+        .|.+||.+...
T Consensus       317 ~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp  386 (445)
T KOG2139|consen  317 FLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP  386 (445)
T ss_pred             ccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence                   00   0000         01135788999999999999975433        36778876543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.85  E-value=9.9e-19  Score=132.98  Aligned_cols=224  Identities=18%  Similarity=0.191  Sum_probs=167.6

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC--CeEEEEe
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMH  140 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~v~d  140 (301)
                      ...+..+.|+.+...|..|+.|| .++|+.+....       ..........|..+-|+.  .++|..+.+  ..+++++
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-------~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~   74 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-------CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVH   74 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHH-------hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEE
Confidence            45577777999999999999999 88998876543       111112334556666754  466665543  4589999


Q ss_pred             CCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      ++....+..+. ...+|.++.++.  +.|+++-.+ .|.|||+++.+.++++......+-.-++++|+...-+++ .-..
T Consensus        75 ~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA-yp~s  149 (391)
T KOG2110|consen   75 FKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA-YPGS  149 (391)
T ss_pred             cccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEE-ecCC
Confidence            98877776653 346899999874  456666554 499999999999998875433333345555554422221 1334


Q ss_pred             CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCc-EEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      ...|.|.+||..+-+++..+..|++++.+++|+++|.+||+++..|+ |+||.+.+++.+..++++-....|.+++|+||
T Consensus       150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD  229 (391)
T ss_pred             CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence            45789999999999999999999999999999999999999999987 78999999999999987764667999999999


Q ss_pred             CC
Q 022184          300 QR  301 (301)
Q Consensus       300 g~  301 (301)
                      ++
T Consensus       230 s~  231 (391)
T KOG2110|consen  230 SQ  231 (391)
T ss_pred             CC
Confidence            75

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.85  E-value=5.8e-20  Score=133.69  Aligned_cols=155  Identities=19%  Similarity=0.231  Sum_probs=122.1

Q ss_pred             CCeeEEEEee-CCC--EEEEeecCCeEEEEeCCCccee----------cccccCCccEEEEEecCCCcEEEEEeCCCcEE
Q 022184          113 GPQKCLSFSV-DGS--RFAAGGVDGHLRIMHWPSLRII----------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR  179 (301)
Q Consensus       113 ~~v~~~~~s~-~~~--~l~~~~~dg~i~v~d~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  179 (301)
                      +.+.+..+.. +++  ++++|.++|.+.+||+.++..+          .....|..++.++.+.+.-..=++++.+..+.
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV  230 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence            3455555433 233  3567888999999999987433          33345667999999988666667788888899


Q ss_pred             EEeCCCC--ce--EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCC
Q 022184          180 IWKTEDG--VA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD  255 (301)
Q Consensus       180 i~d~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~  255 (301)
                      .|++...  ..  .......+. .+..+..-||++.     +++++.|++|++|..++.+++..++.|...|.+++|+|+
T Consensus       231 ~~Sl~~s~gslq~~~e~~lknp-Gv~gvrIRpD~KI-----lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd  304 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLKNP-GVSGVRIRPDGKI-----LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD  304 (323)
T ss_pred             eeeeccccCcccccceEEecCC-CccceEEccCCcE-----EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence            9988643  21  112222333 3889999999997     899999999999999999999999999999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeC
Q 022184          256 GKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       256 ~~~l~~~~~d~~i~i~~~  273 (301)
                      ...+|+++.|++|.+|++
T Consensus       305 ~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  305 CELMAAASKDARISLWKL  322 (323)
T ss_pred             CchhhhccCCceEEeeec
Confidence            999999999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=1.1e-19  Score=139.66  Aligned_cols=229  Identities=14%  Similarity=0.176  Sum_probs=160.9

Q ss_pred             CCcceEEEECCCCC-eEEEEecCCcEEEEEEcCCccccc--cccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184           63 EGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (301)
Q Consensus        63 ~~~v~~~~~~~~~~-~l~~~~~d~~i~~w~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  139 (301)
                      ..+|.++.|.++.. .+++|+.|..|++|.+...+....  ...-......|...|+++.|+|+|.+|++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            56799999999776 999999999999999986654331  111112233578999999999999999999999999999


Q ss_pred             eCC--------C--------cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEE
Q 022184          140 HWP--------S--------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (301)
Q Consensus       140 d~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~  203 (301)
                      ...        +        ....+.+..|...|..++|+|++.++++++.|..+++||+..|.....+..|. ..+..+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~-~yvqgv  171 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE-HYVQGV  171 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc-ccccee
Confidence            765        2        11223445677899999999999999999999999999999999988887654 469999


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee-------------------cc----CCCcEEEEEcCCCCEEE
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------------LL----RKPASVLSISLDGKYLA  260 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------------------~~----~~~v~~~~~s~~~~~l~  260 (301)
                      +|.|-+++     +++-+.|...+.+.+...+.+....                   .|    ..-...++|+|||.+|+
T Consensus       172 awDpl~qy-----v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv  246 (434)
T KOG1009|consen  172 AWDPLNQY-----VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV  246 (434)
T ss_pred             ecchhhhh-----hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence            99999987     5666666666666554322211110                   01    12345689999999998


Q ss_pred             EeeC----C-----CcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          261 MGSK----D-----GDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       261 ~~~~----d-----~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      +...    .     +..++|+-...+....-.... ..++..+.|+|
T Consensus       247 tPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~-~k~~lavr~~p  292 (434)
T KOG1009|consen  247 TPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP-KKPALAVRFSP  292 (434)
T ss_pred             cccceeeeCCceeeceeEeeccccccCceeecCCC-CcceEEEEeee
Confidence            7642    1     234555544332221111233 55666676665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=7.3e-20  Score=141.27  Aligned_cols=195  Identities=20%  Similarity=0.208  Sum_probs=150.6

Q ss_pred             eEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce
Q 022184           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (301)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  146 (301)
                      ..++|+++|..+++++.||++|+|+......       ......|+..|.++.|+|||++|++.+.| ..+||+.+++..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh-------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence            5789999999999999999999999776654       23444588999999999999999999999 899999999976


Q ss_pred             ecccccCC--ccEEEEEecCCC---c--EEEEEeCCCcEEEEeCCCCce---E--EEEeecCCCCeeEEEEccCCCcceE
Q 022184          147 ILDEPKAH--KSVLDMDFSLDS---E--FLATTSTDGSARIWKTEDGVA---W--TFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       147 ~~~~~~~~--~~i~~~~~~~~~---~--~l~~~~~d~~i~i~d~~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      +.......  .....+.|+.|+   .  .++.....+.|+.||+...+.   +  .+.... ...|++++.+++|++   
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf---  295 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKF---  295 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcE---
Confidence            65554222  256677888776   3  233334556677777643222   1  111111 235999999999998   


Q ss_pred             EEEEEeCCcceEEEEEccCceEeeee-eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          215 FCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                        ++.++.+|.|.+++..+.+.+... +.|...|+.+.|+||.+++++.+.+....+..+.-
T Consensus       296 --~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  296 --LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             --EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence              788999999999999988776543 56788999999999999999999999988887754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=1.7e-17  Score=138.80  Aligned_cols=263  Identities=21%  Similarity=0.350  Sum_probs=193.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccC-CcceEEEE-CCCCC-eEEE
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAV-NPSGD-DFVC   80 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~-~l~~   80 (301)
                      ...+.++.+.+.   ...++.++      .++.+.+|.+.......       ..+..+. ..+..+.+ ++++. .++.
T Consensus        65 ~~~i~~~~~~~~---~~~~~~~~------~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (466)
T COG2319          65 EDSITSIAFSPD---GELLLSGS------SDGTIKLWDLDNGEKLI-------KSLEGLHDSSVSKLALSSPDGNSILLA  128 (466)
T ss_pred             cceEEEEEECCC---CcEEEEec------CCCcEEEEEcCCCceeE-------EEEeccCCCceeeEEEECCCcceEEec
Confidence            356777777755   34444433      56777888887654111       1233322 46777777 88887 5555


Q ss_pred             Eec-CCcEEEEEEcC-CccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcceecccccCCccE
Q 022184           81 STT-NGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKSV  157 (301)
Q Consensus        81 ~~~-d~~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~i  157 (301)
                      .+. |+.+.+|+... ....       .....|...+..++|+|++..+++++. ++.+++|+...+..+..+..|...+
T Consensus       129 ~~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  201 (466)
T COG2319         129 SSSLDGTVKLWDLSTPGKLI-------RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV  201 (466)
T ss_pred             cCCCCccEEEEEecCCCeEE-------EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence            444 89999999987 3221       222346678899999999998888885 9999999999877777777788899


Q ss_pred             EEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEE-EEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184          158 LDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       158 ~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  235 (301)
                      .+++|+|++. .+++++.|+.+++||...+.... .+..+.. .. ...|+|++..     +++++.++.+++||.+...
T Consensus       202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSL-----LASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCE-----EEEecCCCcEEEeeecCCC
Confidence            9999999998 55555899999999998777777 4554443 22 2289999954     5688999999999998766


Q ss_pred             E-eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc-ccccCccEEEEEEc
Q 022184          236 K-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFC  297 (301)
Q Consensus       236 ~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~~s  297 (301)
                      . ......|...+.++.|+|++..+++++.|+.+.+|+..+........ ..| ...+..+.|.
T Consensus       275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  337 (466)
T COG2319         275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFS  337 (466)
T ss_pred             cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEEC
Confidence            4 33345667899999999988888889999889999998876655543 356 5578888883

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.84  E-value=1.2e-20  Score=157.05  Aligned_cols=232  Identities=14%  Similarity=0.109  Sum_probs=177.4

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      ...+.+|..+|+|+.|...|.++++++.|..++||..++..+..       ..-.|.+.++.++.+.+..++++++.|..
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA-------s~rGhs~ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA-------SCRGHSGDITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc-------cCCCCccccchhccchhhhhhhhcccCce
Confidence            44578999999999999999999999999999999988877622       22347789999999999999999999999


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--------------eEEEEeec------
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV--------------AWTFLTRN------  195 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~------  195 (301)
                      |++|.+..+.++..+.+|.+.|++++|+|-.    +.+.||++++||.+-.-              ....+...      
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f  331 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF  331 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence            9999999999999999999999999999954    77899999999987111              00111000      


Q ss_pred             ---C------CCCeeEEEEccCCCcceE-------EEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcC-CCCE
Q 022184          196 ---S------DEKIELCRFSKDGTKPFL-------FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGKY  258 (301)
Q Consensus       196 ---~------~~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~  258 (301)
                         .      ......++|....-. |.       ...+++-.+..+++|++.++.....+.+|...+..+.++| +.+.
T Consensus       332 ~Tgs~d~ea~n~e~~~l~~~~~~li-f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri  410 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQLAWRSNLLI-FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI  410 (1113)
T ss_pred             ccccCCcccccchhhHhhhhccceE-EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence               0      000111112111110 00       0023344567788999999998888899999999999999 5566


Q ss_pred             EEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          259 LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       259 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..+++.||...|||+-.+.+++....+|  +.+..-+||+||+
T Consensus       411 ~msag~dgst~iwdi~eg~pik~y~~gh--~kl~d~kFSqdgt  451 (1113)
T KOG0644|consen  411 AMSAGYDGSTIIWDIWEGIPIKHYFIGH--GKLVDGKFSQDGT  451 (1113)
T ss_pred             hhhccCCCceEeeecccCCcceeeeccc--ceeeccccCCCCc
Confidence            7788999999999999988777766565  6677888999984

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2e-18  Score=124.43  Aligned_cols=221  Identities=15%  Similarity=0.194  Sum_probs=160.4

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccc---cccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL---AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  139 (301)
                      ...|.+-+|+|.+++|+++..+|.|.++.+.+-.......   ........|.++++.++|.  ..+|++|+ ||.|+-|
T Consensus        10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence            3457788899999999999999999999987533211111   1112224588999999998  34677777 6999999


Q ss_pred             eCCCcce------ec--ccccCC-----ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEE-
Q 022184          140 HWPSLRI------IL--DEPKAH-----KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF-  205 (301)
Q Consensus       140 d~~~~~~------~~--~~~~~~-----~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-  205 (301)
                      .++....      ..  +.+.+.     ..|+++-..|..+-+++++.|+.++-||+++|+....+.+|.+. +.++.- 
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY-vH~vv~R  165 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY-VHSVVGR  165 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce-eeeeeec
Confidence            8864322      11  111122     26889999998888888889999999999999999999988764 888877 


Q ss_pred             ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCC----------CcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK----------PASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      +.+++      ++++++||++++||.++++.+..+...+.          .|-++  .-+..+|++|+. ..+.+|++++
T Consensus       166 ~~~~q------ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgG-p~lslwhLrs  236 (325)
T KOG0649|consen  166 NANGQ------ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGG-PKLSLWHLRS  236 (325)
T ss_pred             ccCcc------eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecCC-CceeEEeccC
Confidence            55555      69999999999999999988766644332          23334  345668888865 5799999999


Q ss_pred             ceeeccccccccCccEEEEEEccC
Q 022184          276 MEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       276 ~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      .+....+.-   ..++..+.|-.|
T Consensus       237 se~t~vfpi---pa~v~~v~F~~d  257 (325)
T KOG0649|consen  237 SESTCVFPI---PARVHLVDFVDD  257 (325)
T ss_pred             CCceEEEec---ccceeEeeeecc
Confidence            887776631   455666666443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=5.4e-19  Score=142.26  Aligned_cols=199  Identities=12%  Similarity=0.080  Sum_probs=159.5

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      .-.|...|..+.|+..|+||++...+   ..|.|+++......       .......+.+.++.|+|...+|++++ ...
T Consensus       517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-------~PF~kskG~vq~v~FHPs~p~lfVaT-q~~  588 (733)
T KOG0650|consen  517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-------SPFRKSKGLVQRVKFHPSKPYLFVAT-QRS  588 (733)
T ss_pred             EEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc-------CchhhcCCceeEEEecCCCceEEEEe-ccc
Confidence            34688899999999999999988654   57889998776541       12223457899999999888888887 567


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-EEEEeecCCCCeeEEEEccCCCcceE
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      |++||+..++.+.++......|..++.+|.|..|+.++.|+.+..+|+.-... ...+. +|...++.++|++.-..   
T Consensus       589 vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr-~H~~avr~Va~H~ryPL---  664 (733)
T KOG0650|consen  589 VRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR-LHEKAVRSVAFHKRYPL---  664 (733)
T ss_pred             eEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh-hhhhhhhhhhhccccce---
Confidence            99999998888888887778999999999999999999999999999986544 44444 45567999999998775   


Q ss_pred             EEEEEeCCcceEEEEEcc------Cc---eEeeeeeccCC----CcEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184          215 FCTVQRGDKALLAVYDIS------TW---NKIGHKRLLRK----PASVLSISLDGKYLAMGSKDGDICVV  271 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~------~~---~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~d~~i~i~  271 (301)
                        +++++.|+.+.|+.-.      ..   -++..+.+|..    .|..+.|+|...+|++++.||+|++|
T Consensus       665 --fas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  665 --FASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             --eeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence              6888999999998532      11   12445566654    48888999999999999999999998

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=3.3e-18  Score=143.01  Aligned_cols=236  Identities=12%  Similarity=0.084  Sum_probs=156.1

Q ss_pred             eeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec---CCcEEEEEEcCCccccccccccCCCCCCCC
Q 022184           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (301)
Q Consensus        37 ~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  113 (301)
                      -+||.++.++...       ..+..|...+.+.+|+|||+.|+..+.   +..|++||+.+++...      +  ....+
T Consensus       182 ~~l~~~d~dg~~~-------~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~------l--~~~~g  246 (435)
T PRK05137        182 KRLAIMDQDGANV-------RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL------V--GNFPG  246 (435)
T ss_pred             eEEEEECCCCCCc-------EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE------e--ecCCC
Confidence            3566666554322       234567788999999999999988764   4689999998765411      1  11334


Q ss_pred             CeeEEEEeeCCCEEEE-eecCC--eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCc
Q 022184          114 PQKCLSFSVDGSRFAA-GGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGV  187 (301)
Q Consensus       114 ~v~~~~~s~~~~~l~~-~~~dg--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~  187 (301)
                      .+...+|+|||+.|+. .+.++  .|++||+.+++. ..+..+........|+|||+.|+..+. ++  .|.++|+..++
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence            5678899999998764 44454  477788887765 345445555677899999998887764 33  68888887665


Q ss_pred             eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC--
Q 022184          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD--  265 (301)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--  265 (301)
                      .. .+... ...+....|+|+|+.+++  ......+..|.+||+.++... .+. ....+..+.|+|||+.|+..+.+  
T Consensus       326 ~~-~lt~~-~~~~~~~~~SpdG~~ia~--~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~  399 (435)
T PRK05137        326 PR-RISFG-GGRYSTPVWSPRGDLIAF--TKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPG  399 (435)
T ss_pred             eE-EeecC-CCcccCeEECCCCCEEEE--EEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCC
Confidence            43 33322 234667889999997422  111223357889998655432 232 22346778999999998876543  


Q ss_pred             ----CcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          266 ----GDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       266 ----~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                          ..++++++..+.... +.  . .+.+...+|+|
T Consensus       400 ~~~~~~L~~~dl~g~~~~~-l~--~-~~~~~~p~Wsp  432 (435)
T PRK05137        400 SGGAPKLYTVDLTGRNERE-VP--T-PGDASDPAWSP  432 (435)
T ss_pred             CCCcceEEEEECCCCceEE-cc--C-CCCccCcccCC
Confidence                258888887765543 32  2 34577888887

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=4.6e-19  Score=141.04  Aligned_cols=191  Identities=17%  Similarity=0.207  Sum_probs=145.8

Q ss_pred             CCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee
Q 022184           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (301)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (301)
                      ....+.....|.+.+.+-.|+|+|.-|++++.||.|++|...+.-.        ....+...+|+|++|.|+.+.++.+.
T Consensus        93 ~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR--------Stl~Q~~~~v~c~~W~p~S~~vl~c~  164 (737)
T KOG1524|consen   93 SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR--------STVVQNEESIRCARWAPNSNSIVFCQ  164 (737)
T ss_pred             cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH--------HHHhhcCceeEEEEECCCCCceEEec
Confidence            3445667889999999999999999999999999999999765432        11112457899999999888777665


Q ss_pred             cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       132 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                       .+.+.+=.+.....+.+...|.+-|.++.|+|..+.+++|+.|-..++||-. |..+..-. .++.+|++++|.|+..+
T Consensus       165 -g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~~ey~ITSva~npd~~~  241 (737)
T KOG1524|consen  165 -GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA-AEEYAITSVAFNPEKDY  241 (737)
T ss_pred             -CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC-hhccceeeeeeccccce
Confidence             4567777777666677788999999999999999999999999999999974 44444333 34668999999999332


Q ss_pred             ceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~  271 (301)
                            +.++ -.+++           .-+...+.|..++||+||..+++|+..|.+.+=
T Consensus       242 ------~v~S-~nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  242 ------LLWS-YNTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ------eeee-eeeee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence                  2222 11222           122334789999999999999999998876653

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=6.8e-19  Score=132.52  Aligned_cols=224  Identities=14%  Similarity=0.213  Sum_probs=152.6

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  110 (301)
                      +.+.+++|++....  .      ...+++|...++.++|..  ....+.+++.||+|++||++......++.....    
T Consensus        48 Sngsv~lyd~~tg~--~------l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~----  115 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQ--L------LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ----  115 (376)
T ss_pred             cCCeEEEEeccchh--h------hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC----
Confidence            55677998876521  1      345788899999999976  456788999999999999998766444332211    


Q ss_pred             CCCCeeEEEEeeCCCEEEEeec----CCeEEEEeCCCcce-ecc-cccCCccEEEEEecC-CCcEEEEEeCCCcEEEEeC
Q 022184          111 DAGPQKCLSFSVDGSRFAAGGV----DGHLRIMHWPSLRI-ILD-EPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKT  183 (301)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~----dg~i~v~d~~~~~~-~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~  183 (301)
                      ...+..+++.+..++.++.|.+    +-.|.+||++..+. +.. ...|.+.|+++.|+| +.++|++|+.||-|.+||+
T Consensus       116 ~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  116 SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            1245677777777888888864    67899999987765 433 346778999999999 5679999999999999999


Q ss_pred             CCCce----EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce------------------------
Q 022184          184 EDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------------------------  235 (301)
Q Consensus       184 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------------------  235 (301)
                      +....    +..+.  +...|.++.|..++-.-    +..-+......+|+++.+.                        
T Consensus       196 ~~d~EeDaL~~viN--~~sSI~~igw~~~~ykr----I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  196 KKDNEEDALLHVIN--HGSSIHLIGWLSKKYKR----IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             CCCcchhhHHHhhc--ccceeeeeeeecCCcce----EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            75422    12222  23346777777666211    2222334445555543211                        


Q ss_pred             -------------------------------------Eeeeeec-cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          236 -------------------------------------KIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       236 -------------------------------------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                                                           .+..+.+ |..-|+++.|...+.++++|++||.+.+|..+
T Consensus       270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence                                                 1111222 23446677777778899999999999999954

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=2.8e-19  Score=142.26  Aligned_cols=225  Identities=16%  Similarity=0.189  Sum_probs=154.3

Q ss_pred             ccCCcceEEEECCCCCeEEEEecCCcEEEEE-EcCCcccc-ccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEE
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE-VYGGATDI-NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~-~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  138 (301)
                      .|...|.++.|+.+...+.++ .|..+.+|. +....... ..+....+...|..+ .+..=-.....++.++.||.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~-rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGG-RSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccc-cccCCCCCcceEEEEcCCceEEE
Confidence            456667899998776655555 555555554 43332211 111111111112110 00000112357888899999999


Q ss_pred             EeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      .+ +.++....+..|.+.+.+-.|+|||.-|++++.||.|++|.- +|-...++. ....+|+|++|.|+.+.+    +.
T Consensus        90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-Q~~~~v~c~~W~p~S~~v----l~  162 (737)
T KOG1524|consen   90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-QNEESIRCARWAPNSNSI----VF  162 (737)
T ss_pred             ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHh-hcCceeEEEEECCCCCce----EE
Confidence            87 566777778889999999999999999999999999999984 444333333 234579999999999872    22


Q ss_pred             EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                        +..+.+.+=.+.....+-..+.|++-|.++.|++...++++|++|-+.+|||.....+...  ..| ..+|++++|+|
T Consensus       163 --c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S--~~~-ey~ITSva~np  237 (737)
T KOG1524|consen  163 --CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS--AAE-EYAITSVAFNP  237 (737)
T ss_pred             --ecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC--Chh-ccceeeeeecc
Confidence              2345677767766666667889999999999999999999999999999999865444433  455 67777777777


Q ss_pred             C
Q 022184          299 T  299 (301)
Q Consensus       299 d  299 (301)
                      |
T Consensus       238 d  238 (737)
T KOG1524|consen  238 E  238 (737)
T ss_pred             c
Confidence            6

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=3.6e-18  Score=142.20  Aligned_cols=238  Identities=17%  Similarity=0.172  Sum_probs=149.3

Q ss_pred             eeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCC
Q 022184           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (301)
Q Consensus        37 ~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  113 (301)
                      -+||.++..+...       ..+..+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +     .  ...+
T Consensus       176 ~~L~~~D~dG~~~-------~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-----~--~~~g  240 (427)
T PRK02889        176 YQLQISDADGQNA-------QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-----A--NFKG  240 (427)
T ss_pred             cEEEEECCCCCCc-------eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-----e--cCCC
Confidence            3667666654321       1234567789999999999999877643   359999998775411 1     1  1223


Q ss_pred             CeeEEEEeeCCCEEEE-eecCCeEEEEe--CCCcceecccccCCccEEEEEecCCCcEEEEEeC-CCcEEEEeC--CCCc
Q 022184          114 PQKCLSFSVDGSRFAA-GGVDGHLRIMH--WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKT--EDGV  187 (301)
Q Consensus       114 ~v~~~~~s~~~~~l~~-~~~dg~i~v~d--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~--~~~~  187 (301)
                      .....+|+|||+.|+. .+.++...+|.  +..+. ...+..+........|+|||+.|+..+. ++...+|.+  .+++
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence            4567899999998864 56677666654  44444 3444444445567889999998886664 456666654  4444


Q ss_pred             eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC-
Q 022184          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG-  266 (301)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-  266 (301)
                      . ..+... .......+|+|+|+++++  ....+....|.+||+.+++... +.. ......+.|+|||++|+.++.++ 
T Consensus       320 ~-~~lt~~-g~~~~~~~~SpDG~~Ia~--~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g  393 (427)
T PRK02889        320 A-QRVTFT-GSYNTSPRISPDGKLLAY--ISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGG  393 (427)
T ss_pred             e-EEEecC-CCCcCceEECCCCCEEEE--EEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCC
Confidence            3 222222 222446789999997321  1111223479999998876543 222 22346789999999998887554 


Q ss_pred             --cEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          267 --DICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       267 --~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                        .+.+.++. +.....+ ..+ .+.+...+|+|-
T Consensus       394 ~~~l~~~~~~-g~~~~~l-~~~-~g~~~~p~wsp~  425 (427)
T PRK02889        394 RSVLAAVSSD-GRIKQRL-SVQ-GGDVREPSWGPF  425 (427)
T ss_pred             CEEEEEEECC-CCceEEe-ecC-CCCCCCCccCCC
Confidence              36666664 4444433 234 567888899883

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=8.4e-18  Score=140.43  Aligned_cols=222  Identities=18%  Similarity=0.164  Sum_probs=146.4

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEE-eecCC
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG  134 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg  134 (301)
                      +..+...+.+.+|+|||+.|+..+.+   ..|++|++.+++...      ..  ...+....++|+|||+.|+. .+.+|
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~------l~--~~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL------VA--SFRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE------ec--cCCCCccCceECCCCCEEEEEEeCCC
Confidence            44567789999999999999987643   469999997765311      11  11233457899999998764 44454


Q ss_pred             --eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CCc--EEEEeCCCCceEEEEeecCCCCeeEEEEccCC
Q 022184          135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (301)
Q Consensus       135 --~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (301)
                        .|++||+.+++. ..+..+......++|+|||+.|+..+. ++.  |.++|+.+++... +... .......+|+|+|
T Consensus       271 ~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~~~~~~~SpDG  347 (433)
T PRK04922        271 NPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNYNARASVSPDG  347 (433)
T ss_pred             CceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCCccCEEECCCC
Confidence              699999988765 344444444567899999998887763 444  6667776665433 3222 2234578999999


Q ss_pred             CcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeccccccc
Q 022184          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLH  286 (301)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~  286 (301)
                      +++++  ....+....|.+||+.+++.. .+. +......+.|+|||++|+..+.+   +.|.++++..... ..+ ..+
T Consensus       348 ~~Ia~--~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~-~~l-~~~  421 (433)
T PRK04922        348 KKIAM--VHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR-QRL-VSA  421 (433)
T ss_pred             CEEEE--EECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce-EEc-ccC
Confidence            97322  111122347999999887654 232 22234567999999988877653   4688888865443 333 233


Q ss_pred             cCccEEEEEEcc
Q 022184          287 LGTSIALVEFCP  298 (301)
Q Consensus       287 ~~~~v~~~~~sp  298 (301)
                       .+.+..++|+|
T Consensus       422 -~g~~~~p~wsp  432 (433)
T PRK04922        422 -DGEVREPAWSP  432 (433)
T ss_pred             -CCCCCCCccCC
Confidence             46678888987

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=1.2e-17  Score=128.06  Aligned_cols=224  Identities=13%  Similarity=0.115  Sum_probs=167.4

Q ss_pred             ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-CCEEEEeecC--CeEE
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVD--GHLR  137 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d--g~i~  137 (301)
                      ....+|..++..  ...|++|-.+|.+++|..+.+.....    .+..+....++..+.-++. ...+++|+..  ..+.
T Consensus       103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss----~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lk  176 (412)
T KOG3881|consen  103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSS----KLIKLATGPGLYDVRQTDTDPYIVATGGKENINELK  176 (412)
T ss_pred             cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccc----cceeeecCCceeeeccCCCCCceEecCchhccccee
Confidence            335566666553  33677888899999999986653211    1112223355666776774 4456678888  8899


Q ss_pred             EEeCCCcceecccccCCc---------cEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEE
Q 022184          138 IMHWPSLRIILDEPKAHK---------SVLDMDFSLD--SEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRF  205 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~~~---------~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~  205 (301)
                      +||+.+.+.+..-.....         .++++.|-+.  ...||+++.-+.+++||.+.+. ++..+... ..+++++..
T Consensus       177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l  255 (412)
T KOG3881|consen  177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGL  255 (412)
T ss_pred             eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-cCcceeeee
Confidence            999998866544332221         3667888886  7899999999999999998764 45555443 457999999


Q ss_pred             ccCCCcceEEEEEEeCCcceEEEEEccCceEeee-eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccc
Q 022184          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR  284 (301)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~  284 (301)
                      .|+++.     ++++...+.+..||+++++.... +.+..+.++++..+|..+++++++-|..|+|+|+++.+++...+.
T Consensus       256 ~p~gn~-----Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv  330 (412)
T KOG3881|consen  256 TPSGNF-----IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV  330 (412)
T ss_pred             cCCCcE-----EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence            999997     78889999999999999988766 778889999999999999999999999999999999777765432


Q ss_pred             cccCccEEEEEEccC
Q 022184          285 LHLGTSIALVEFCPT  299 (301)
Q Consensus       285 ~~~~~~v~~~~~spd  299 (301)
                         .+..+.+-+.++
T Consensus       331 ---Ks~lt~il~~~~  342 (412)
T KOG3881|consen  331 ---KSRLTFILLRDD  342 (412)
T ss_pred             ---hccccEEEecCC
Confidence               455666666543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=2e-18  Score=140.99  Aligned_cols=234  Identities=13%  Similarity=0.167  Sum_probs=176.6

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      +..|+|++|+.|   +..+|.|+      .|..+.+|.-..++. +         --.|.+.|.||.|+|-...|++++-
T Consensus        53 KDtVycVAys~d---GkrFASG~------aDK~VI~W~~klEG~-L---------kYSH~D~IQCMsFNP~~h~LasCsL  113 (1081)
T KOG1538|consen   53 KDTVYCVAYAKD---GKRFASGS------ADKSVIIWTSKLEGI-L---------KYSHNDAIQCMSFNPITHQLASCSL  113 (1081)
T ss_pred             cceEEEEEEccC---CceeccCC------CceeEEEecccccce-e---------eeccCCeeeEeecCchHHHhhhcch
Confidence            567999999988   67888877      556667776544331 1         1368999999999999999999876


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc---CCccEEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK---AHKSVLDM  160 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~i~~~  160 (301)
                      .. .-+|..+....         ........+.+++|..||++++.|-.+|+|.+-+- ++++...+..   ..++|+++
T Consensus       114 sd-FglWS~~qK~V---------~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi  182 (1081)
T KOG1538|consen  114 SD-FGLWSPEQKSV---------SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSI  182 (1081)
T ss_pred             hh-ccccChhhhhH---------HhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEE
Confidence            55 67888765432         11123467899999999999999999999999763 4444333332   44689999


Q ss_pred             EecCCC-----cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184          161 DFSLDS-----EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       161 ~~~~~~-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  235 (301)
                      +|+|..     ..+++.....++..|.+. |+.+..-.. -+....|+.+.++|.+     +..|+.|+.+++|-. .|-
T Consensus       183 ~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~-L~FdP~CisYf~NGEy-----~LiGGsdk~L~~fTR-~Gv  254 (1081)
T KOG1538|consen  183 CWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA-LNFDPCCISYFTNGEY-----ILLGGSDKQLSLFTR-DGV  254 (1081)
T ss_pred             EecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc-CCCCchhheeccCCcE-----EEEccCCCceEEEee-cCe
Confidence            999953     367888888888888874 443332111 1223678999999998     788999999999974 455


Q ss_pred             EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      .+.+.......|+.++..|++++++.|+.||+|..|++-.
T Consensus       255 rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  255 RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            6666666788999999999999999999999999999753

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=3.6e-19  Score=142.15  Aligned_cols=238  Identities=14%  Similarity=0.178  Sum_probs=172.0

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccc-cccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ..++..|.+.|+.++|+|....|++++.|++|.+|+++..... .....+......|.++|.|+++.+++..+++|+-||
T Consensus       287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence            3467889999999999999999999999999999999442211 111222334456889999999999999999999999


Q ss_pred             eEEEEeCCCcc----------eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-CCCeeEE
Q 022184          135 HLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELC  203 (301)
Q Consensus       135 ~i~v~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~  203 (301)
                      +|+.|++....          ....+.+|.+.++.+++++....|++++.||++++|+.....+ ..+.... .+...++
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV  445 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence            99999765221          1234567888999999999988999999999999999876665 3332221 1224455


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc-------CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      .+-......    .++...-+.-.++++.....+..+...       ...+..+.++|.+.+.+++..|+.|+++|..++
T Consensus       446 d~~ss~~a~----~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~  521 (577)
T KOG0642|consen  446 DRTSSRPAH----SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG  521 (577)
T ss_pred             eeccchhHh----hhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence            554433211    222222233334444443333222211       134677889999999999999999999999999


Q ss_pred             eeeccccccccCccEEEEEEccCC
Q 022184          277 EINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       277 ~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      +++... ..| ...++++++.|+|
T Consensus       522 ~~l~s~-~a~-~~svtslai~~ng  543 (577)
T KOG0642|consen  522 KILHSM-VAH-KDSVTSLAIDPNG  543 (577)
T ss_pred             ccchhe-eec-cceecceeecCCC
Confidence            999887 578 8899999999987

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.81  E-value=5.7e-17  Score=135.60  Aligned_cols=229  Identities=24%  Similarity=0.360  Sum_probs=180.5

Q ss_pred             cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCc-cccccccccCCCCCCCCCeeEEEE-eeCCC-EEEEeec-C
Q 022184           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSF-SVDGS-RFAAGGV-D  133 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~-~l~~~~~-d  133 (301)
                      .+..|...+..+.+.+.+..++.++.|+.+.+|+..... ....+...      +...+..+.+ ++++. .++..+. |
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~d  133 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL------HDSSVSKLALSSPDGNSILLASSSLD  133 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEecc------CCCceeeEEEECCCcceEEeccCCCC
Confidence            456889999999999999999999999999999998775 21111110      1135666666 77777 5555444 8


Q ss_pred             CeEEEEeCCC-cceecccccCCccEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          134 GHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       134 g~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      +.+.+|+... ......+..|...|..++|+|++..+++++. |+.+++|++..+..+..+..+ ...+.+++|+|++..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  212 (466)
T COG2319         134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDGGL  212 (466)
T ss_pred             ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcCCcce
Confidence            9999999987 6666778888889999999999998888885 999999999988887777764 457999999999883


Q ss_pred             ceEEEEEEeCCcceEEEEEccCceEee-eeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee-eccccccccCc
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGT  289 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~  289 (301)
                      .    +++.+.|+.|.+||...+.... .+..|.... ...|+|++.++++++.|+.+++|++..... .... ..| ..
T Consensus       213 ~----~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~-~~  285 (466)
T COG2319         213 L----IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGH-SS  285 (466)
T ss_pred             E----EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecC-Cc
Confidence            1    3445899999999988777766 566666654 338999999999999999999999987664 3333 567 88


Q ss_pred             cEEEEEEccCC
Q 022184          290 SIALVEFCPTQ  300 (301)
Q Consensus       290 ~v~~~~~spdg  300 (301)
                      .+.++.|+|++
T Consensus       286 ~v~~~~~~~~~  296 (466)
T COG2319         286 SVLSVAFSPDG  296 (466)
T ss_pred             cEEEEEECCCC
Confidence            99999999965

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.80  E-value=8.6e-18  Score=133.82  Aligned_cols=174  Identities=20%  Similarity=0.263  Sum_probs=132.8

Q ss_pred             CCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCC-------
Q 022184           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS-------  143 (301)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~-------  143 (301)
                      .|.+--++.+-.-|.+++.|....+. .++...  ........++++.|-| +...++++-.+|.+++||..-       
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~-sklfne--~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p  258 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEV-SKLFNE--ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP  258 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHH-HHhhhh--cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence            34566777887788899998876332 121111  1112347899999999 556677778899999997521       


Q ss_pred             -------cc--------------eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeE
Q 022184          144 -------LR--------------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL  202 (301)
Q Consensus       144 -------~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~  202 (301)
                             +.              ++....-..+.|..++|+|||++||+.+.||.+||||..+.+.+..++.-.. ...|
T Consensus       259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-GLLC  337 (636)
T KOG2394|consen  259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-GLLC  337 (636)
T ss_pred             cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-ceEE
Confidence                   00              0111111234788999999999999999999999999999888776665444 4899


Q ss_pred             EEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcC
Q 022184          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (301)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (301)
                      ++|||||++     ++++++|-.|.||.+...+.+..-.+|+..|+.++|+|
T Consensus       338 vcWSPDGKy-----IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  338 VCWSPDGKY-----IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEcCCccE-----EEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            999999998     89999999999999999999998999999999999983

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=7.1e-20  Score=143.02  Aligned_cols=218  Identities=11%  Similarity=0.138  Sum_probs=179.6

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      .-....+.++.+|++++.++..|.+-.+|..+.....        .+.....|..+.|-.+.+++|++- ...++||| .
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~--------Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~  198 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF--------EINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-N  198 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeee--------eeehhhhhhhhhhhcchHHHHhhh-hceEEEec-C
Confidence            4457789999999999999999999999999887622        223346788999988888777765 67899999 4


Q ss_pred             CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCC
Q 022184          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (301)
                      .|..+.-+. ...+|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+ .+..+.-+|-...     +-.|..
T Consensus       199 ~GtElHClk-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-~~~vm~qNP~NaV-----ih~Ghs  271 (545)
T KOG1272|consen  199 NGTELHCLK-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-RTDVMKQNPYNAV-----IHLGHS  271 (545)
T ss_pred             CCcEEeehh-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-ccchhhcCCccce-----EEEcCC
Confidence            565555554 346889999999999999999999999999999999988876543 5777888887664     688999


Q ss_pred             cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      .|+|.+|.....+++..+..|.++|.++++.++|+|+++.+.|..++|||++....+......|   +...++||.-|
T Consensus       272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg  346 (545)
T KOG1272|consen  272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG  346 (545)
T ss_pred             CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc
Confidence            9999999999999998899999999999999999999999999999999999988776664433   55666666543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.80  E-value=9.3e-18  Score=125.51  Aligned_cols=206  Identities=11%  Similarity=0.064  Sum_probs=162.6

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      ..+|+|.+|++|+..+|.+.....|.||...+...-..    .-....|...|++++|+|..+.|++++.|..-++|...
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~----~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP----AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee----ceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            67899999999999999999999999999987663111    11223477899999999999999999999999999984


Q ss_pred             Cc---ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE---EEEeecCCCCeeEEEEccCCCcceEEE
Q 022184          143 SL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW---TFLTRNSDEKIELCRFSKDGTKPFLFC  216 (301)
Q Consensus       143 ~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (301)
                      .+   ++...+..+....+++.|+|.++.||+++....|.||-.+..+.-   ..++.+....|.+++|+|++-.     
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL-----  160 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL-----  160 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce-----
Confidence            32   344455667788999999999999999999999999987655432   1233344556999999999886     


Q ss_pred             EEEeCCcceEEEEEccC------------------ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          217 TVQRGDKALLAVYDIST------------------WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       217 ~~~~~~~~~i~~~d~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      +++++.|+..++|..--                  ++.+.+.....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus       161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            78999999999986421                  11223333445789999999999999999999999999987664

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.80  E-value=7.3e-17  Score=134.45  Aligned_cols=250  Identities=13%  Similarity=0.120  Sum_probs=168.2

Q ss_pred             ceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCC
Q 022184           36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (301)
Q Consensus        36 ~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  114 (301)
                      .+.+|++.....     |..  .+ .-...|+++.|+| +..+++.|..+|.|.+||+..+........ ....-.|..+
T Consensus       223 ~~~vW~~~~p~~-----Pe~--~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l-s~~~~sh~~~  293 (555)
T KOG1587|consen  223 VLLVWSLKNPNT-----PEL--VL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL-SALEVSHSEP  293 (555)
T ss_pred             eEEEEecCCCCC-----ceE--EE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc-ccccccCCcC
Confidence            567777765421     111  12 2367899999999 455777788899999999988765321111 1233457889


Q ss_pred             eeEEEEeeCC--CEEEEeecCCeEEEEeCCCccee-----cccc-------cCCccEEEEEecC-CCcEEEEEeCCCcEE
Q 022184          115 QKCLSFSVDG--SRFAAGGVDGHLRIMHWPSLRII-----LDEP-------KAHKSVLDMDFSL-DSEFLATTSTDGSAR  179 (301)
Q Consensus       115 v~~~~~s~~~--~~l~~~~~dg~i~v~d~~~~~~~-----~~~~-------~~~~~i~~~~~~~-~~~~l~~~~~d~~i~  179 (301)
                      +..+.|-.+.  .-+++++.||.|..|+++.-...     ....       .....+++++|.+ +...|+.|+.+|.|.
T Consensus       294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~  373 (555)
T KOG1587|consen  294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY  373 (555)
T ss_pred             eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence            9999997743  44999999999999987543221     0111       1123688999988 556899999999987


Q ss_pred             EEeCC---CCc----eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc-CceEeeeeeccCCCcEEEE
Q 022184          180 IWKTE---DGV----AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLS  251 (301)
Q Consensus       180 i~d~~---~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~v~~~~  251 (301)
                      --+-.   .+.    ........+.++|+.+.++|=+..+|    .+++ |-++++|... ...++..+..+...+++++
T Consensus       374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f----ls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va  448 (555)
T KOG1587|consen  374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF----LSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA  448 (555)
T ss_pred             EEeccCCcccccccccccccccccCcceEeeecCCCcccee----eeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence            73322   222    01111223456899999999988743    2333 8899999988 6666766777777799999


Q ss_pred             EcCCC-CEEEEeeCCCcEEEEeCCCce--eeccccccccCccEEEEEEccCCC
Q 022184          252 ISLDG-KYLAMGSKDGDICVVDVKKME--INHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       252 ~s~~~-~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |||-. ..++++..||.|.+||+....  +.... ..+ ....+.+.|+++|+
T Consensus       449 WSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~-~~~-~~~l~~~~~s~~g~  499 (555)
T KOG1587|consen  449 WSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ-KVC-SPALTRVRWSPNGK  499 (555)
T ss_pred             EcCcCceEEEEEcCCCceehhhhhccccCCcccc-ccc-ccccceeecCCCCc
Confidence            99965 577788889999999997543  22222 222 45566777777664

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.7e-18  Score=138.27  Aligned_cols=218  Identities=10%  Similarity=0.042  Sum_probs=158.4

Q ss_pred             ceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEee
Q 022184           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGG  131 (301)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~  131 (301)
                      ..+.++.||++.|+++.|+.+|.+|++|+.|-.+.|||.-..+...      .....|...|.+++|-|  +.+.+++|.
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh------sI~TgHtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH------SISTGHTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceee------eeecccccceeEEeeeccCCCeEEEecc
Confidence            3466799999999999999999999999999999999997554421      22345889999999999  567889999


Q ss_pred             cCCeEEEEeCCCcc----------eecccccCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEE-------Ee
Q 022184          132 VDGHLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTF-------LT  193 (301)
Q Consensus       132 ~dg~i~v~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~-------~~  193 (301)
                      .|..|+++|+...+          .......|...|..++-.|++ ..+.+++.||+++-+|++.......       +.
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~  194 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV  194 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence            99999999997422          223344566788889999988 6899999999999999986432111       00


Q ss_pred             e--cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce------------------Eeeeee-cc----C----
Q 022184          194 R--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------------------KIGHKR-LL----R----  244 (301)
Q Consensus       194 ~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------------~~~~~~-~~----~----  244 (301)
                      .  ..--...++..+|...+.    ++.|+.+-..++||.+...                  ++..+. .|    .    
T Consensus       195 ny~~~lielk~ltisp~rp~~----laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  195 NYNPQLIELKCLTISPSRPYY----LAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             HhchhhheeeeeeecCCCCce----EEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence            0  011236789999998873    6889999999999954210                  111110 11    0    


Q ss_pred             ---CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecc
Q 022184          245 ---KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (301)
Q Consensus       245 ---~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~  281 (301)
                         ..++-+.|+|+|.-|++.-....|++||+..++....
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence               1256688999997776665556899999987665443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.8e-16  Score=120.68  Aligned_cols=251  Identities=14%  Similarity=0.111  Sum_probs=159.7

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee----CCce--eccccccCCcceEEEECCCCCe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT----SPLV--TYVFDESEGDPMTIAVNPSGDD   77 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~--~~~~~~h~~~v~~~~~~~~~~~   77 (301)
                      ...|+|++|-|..  ...+++|       ..+.|.||..+.....-..    ....  ...-.+| .+|+++.|.+||..
T Consensus       140 QrnvtclawRPls--aselavg-------Cr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~  209 (445)
T KOG2139|consen  140 QRNVTCLAWRPLS--ASELAVG-------CRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI  209 (445)
T ss_pred             hcceeEEEeccCC--cceeeee-------ecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCE
Confidence            3568999999664  4566663       4455689988764322110    1111  1223445 68999999999999


Q ss_pred             EEEEec-CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCcc
Q 022184           78 FVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS  156 (301)
Q Consensus        78 l~~~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  156 (301)
                      +++++. |..|.|||++++....-.       -...+.+.-+.||||+.+|+.+.-|+..++|+..+........-..+.
T Consensus       210 l~tAS~gsssi~iWdpdtg~~~pL~-------~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgr  282 (445)
T KOG2139|consen  210 LVTASFGSSSIMIWDPDTGQKIPLI-------PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGR  282 (445)
T ss_pred             EeecccCcceEEEEcCCCCCccccc-------ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCc
Confidence            999876 578999999988752211       124577889999999999999999999999965433222223334459


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEeCCCCc------------eE---EEEe-----ec---CCCCeeEEEEccCCCcce
Q 022184          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGV------------AW---TFLT-----RN---SDEKIELCRFSKDGTKPF  213 (301)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~---~~~~-----~~---~~~~v~~~~~~~~~~~~~  213 (301)
                      |...+|+|+|.+|+.... +.-++|.+.-..            ..   ..+.     .+   ..+.+.+++|.|.|.++.
T Consensus       283 vqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa  361 (445)
T KOG2139|consen  283 VQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA  361 (445)
T ss_pred             eeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence            999999999997665543 344455442100            00   0000     00   134588999999999732


Q ss_pred             EEEEEEeCC-----cceEEEEEccCceEeeeee---ccCCCcEEEEEcC---CCCEEEEeeCCCcEEEEeCC
Q 022184          214 LFCTVQRGD-----KALLAVYDISTWNKIGHKR---LLRKPASVLSISL---DGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       214 ~~~~~~~~~-----~~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~---~~~~l~~~~~d~~i~i~~~~  274 (301)
                        .+.-+..     ...|.+||.+..-.+....   ........++|+|   ++.+|..+=..|.+.-|++.
T Consensus       362 --v~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  362 --VIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             --EEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence              2333322     3457778877654432221   1123356678877   56778887777888877763

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.78  E-value=2.6e-17  Score=131.14  Aligned_cols=220  Identities=17%  Similarity=0.242  Sum_probs=157.8

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEE-----eeCCCEEEEeecCCeEEEEe
Q 022184           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-----SVDGSRFAAGGVDGHLRIMH  140 (301)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~v~d  140 (301)
                      +....++-.|++|+..-.+ .+++|+..........+.+  ..+.. ....|-+|     .|++--+++|-.-|.+++.|
T Consensus       126 ~~~~~~~~~gd~lcFnvg~-~lyv~~~~g~~~~~~pi~k--~~y~g-t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id  201 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVGR-ELYVYSYRGAADLSKPIDK--REYKG-TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID  201 (636)
T ss_pred             eeeccccCCCCEEEEecCC-eEEEEEccCcchhccchhh--hcccC-CCCceecccccccCCCCcceEEeeccCceEEec
Confidence            4455555577777765433 4899998864332221111  11111 22344444     34566788888889999998


Q ss_pred             CCCcceeccccc-----CCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCC--------------Cc-------------
Q 022184          141 WPSLRIILDEPK-----AHKSVLDMDFSLDS-EFLATTSTDGSARIWKTED--------------GV-------------  187 (301)
Q Consensus       141 ~~~~~~~~~~~~-----~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~--------------~~-------------  187 (301)
                      ....+. .++..     .+..++++.|-|.+ ..++.+-.+|.+.+||..-              +.             
T Consensus       202 p~~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r  280 (636)
T KOG2394|consen  202 PINFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR  280 (636)
T ss_pred             chhhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence            765332 22211     22589999999944 4666777899999997631              11             


Q ss_pred             -eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC
Q 022184          188 -AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG  266 (301)
Q Consensus       188 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  266 (301)
                       ++..+... ...|...+|+|||++     +++.+.||.++|||..+.+.+..++..-+...|++|||||+||++|++|.
T Consensus       281 NPv~~w~~~-~g~in~f~FS~DG~~-----LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD  354 (636)
T KOG2394|consen  281 NPVARWHIG-EGSINEFAFSPDGKY-----LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD  354 (636)
T ss_pred             CccceeEec-cccccceeEcCCCce-----EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence             11112111 235888999999998     79999999999999999888877777778899999999999999999999


Q ss_pred             cEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       267 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      .|.||.+...+.+..- ++| .+.|+.|+|.|
T Consensus       355 LVtVwSf~erRVVARG-qGH-kSWVs~VaFDp  384 (636)
T KOG2394|consen  355 LVTVWSFEERRVVARG-QGH-KSWVSVVAFDP  384 (636)
T ss_pred             eEEEEEeccceEEEec-ccc-ccceeeEeecc
Confidence            9999999999998877 789 99999999985

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.5e-16  Score=133.49  Aligned_cols=248  Identities=13%  Similarity=0.135  Sum_probs=169.1

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..+++|.+++|.   .+++|.|.      .+|.|.+|.=-....    .......+.-|.+.|++++|+++|.+|++|+.
T Consensus       205 tf~~t~~~~spn---~~~~Aa~d------~dGrI~vw~d~~~~~----~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~  271 (792)
T KOG1963|consen  205 TFNITCVALSPN---ERYLAAGD------SDGRILVWRDFGSSD----DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR  271 (792)
T ss_pred             cccceeEEeccc---cceEEEec------cCCcEEEEecccccc----ccccceEEEecccccceeEEecCCceEeeccc
Confidence            345799999988   78998877      667778886433111    11123457889999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc-----------
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK-----------  152 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-----------  152 (301)
                      .+.+.+|.+++++.  ++.    +.  -.++|..+.+|||+.+.+....|+.|.+....+.+....+.+           
T Consensus       272 E~VLv~Wq~~T~~k--qfL----PR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~  343 (792)
T KOG1963|consen  272 EGVLVLWQLETGKK--QFL----PR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR  343 (792)
T ss_pred             ceEEEEEeecCCCc--ccc----cc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence            99999999998873  221    11  347899999999999999999999999998755443222211           


Q ss_pred             CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---------------------------------------
Q 022184          153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT---------------------------------------  193 (301)
Q Consensus       153 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------------------------------------  193 (301)
                      ..+-.+.++++|.-+.++..+..+.|.+||+.+.+.+..+.                                       
T Consensus       344 ~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~  423 (792)
T KOG1963|consen  344 PQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKF  423 (792)
T ss_pred             ccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhh
Confidence            12335677888866777778888888888876544433321                                       


Q ss_pred             ----------------------------ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc----------e
Q 022184          194 ----------------------------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----------N  235 (301)
Q Consensus       194 ----------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----------~  235 (301)
                                                  .+|+..+...++.+..+..   ..++++.|+.+++|-+...          .
T Consensus       424 ~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~---~~vta~~dg~~KiW~~~~~~n~~k~~s~W~  500 (792)
T KOG1963|consen  424 NFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSV---RCVTASVDGDFKIWVFTDDSNIYKKSSNWT  500 (792)
T ss_pred             hccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccc---eeEEeccCCeEEEEEEecccccCcCccceE
Confidence                                        1111111111221111110   1568889999999987322          2


Q ss_pred             EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      +...-.-|+.+++.++|+.||..|+++ .++.|.+||..+.
T Consensus       501 c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  501 CKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTK  540 (792)
T ss_pred             EeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCCh
Confidence            222222367889999999999766655 5789999999883

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=1.9e-17  Score=138.10  Aligned_cols=195  Identities=20%  Similarity=0.126  Sum_probs=128.5

Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---CeEEEEeCCCcceecccccCCccEEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDM  160 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~  160 (301)
                      +..|++||.+....        .....+...+...+|||||+.|+..+.+   ..|++||+.+++... +....+....+
T Consensus       183 ~~~i~i~d~dg~~~--------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~  253 (429)
T PRK01742        183 PYEVRVADYDGFNQ--------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAP  253 (429)
T ss_pred             eEEEEEECCCCCCc--------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCce
Confidence            36899999876542        1112345678999999999999887654   479999998875422 22222334568


Q ss_pred             EecCCCcEEEEEe-CCCcEEEE--eCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-E
Q 022184          161 DFSLDSEFLATTS-TDGSARIW--KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-K  236 (301)
Q Consensus       161 ~~~~~~~~l~~~~-~d~~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~  236 (301)
                      +|+|||+.|+.++ .+|.+.||  |+.+++. ..+..+ ...+....|+|||+.+    ++++..++...+|++.... .
T Consensus       254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~-~~~~~~~~wSpDG~~i----~f~s~~~g~~~I~~~~~~~~~  327 (429)
T PRK01742        254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSG-AGNNTEPSWSPDGQSI----LFTSDRSGSPQVYRMSASGGG  327 (429)
T ss_pred             eECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccC-CCCcCCEEECCCCCEE----EEEECCCCCceEEEEECCCCC
Confidence            9999999888765 67765555  6665554 444433 3357889999999973    2344556777777764321 1


Q ss_pred             eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ...+ .+..  ..+.|+|||++|++.+.++ +.+||+.+++...... ..   ...+++|+|||+
T Consensus       328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~---~~~~~~~sPdG~  384 (429)
T PRK01742        328 ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF---LDESPSISPNGI  384 (429)
T ss_pred             eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC---CCCCceECCCCC
Confidence            2222 2222  4578999999999887754 6669999887554331 11   235678999985

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.78  E-value=7.4e-16  Score=124.74  Aligned_cols=223  Identities=15%  Similarity=0.174  Sum_probs=142.0

Q ss_pred             cceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCC
Q 022184           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS  143 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~  143 (301)
                      .-..+.|+|||+++++++.||.|.++|+.+.+...++        .......++++|+||++++++. .++.+.++|.++
T Consensus        38 ~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i--------~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t  109 (369)
T PF02239_consen   38 PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI--------KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET  109 (369)
T ss_dssp             EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE--------E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred             ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE--------ecCCCcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence            3345789999999999999999999999988763332        2334568899999999998775 589999999999


Q ss_pred             cceecccccC-------CccEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          144 LRIILDEPKA-------HKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       144 ~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      .+.+..+...       ...+..+..+|....++..-. -+.|.+.|....+.+...............|+|+++++   
T Consensus       110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~---  186 (369)
T PF02239_consen  110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF---  186 (369)
T ss_dssp             --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE---
T ss_pred             ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccccee---
Confidence            9887765432       235778888888885655554 48888889877655443333334457889999999973   


Q ss_pred             EEEEeCCcceEEEEEccCceEe-------------------------------------------------------eee
Q 022184          216 CTVQRGDKALLAVYDISTWNKI-------------------------------------------------------GHK  240 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~~-------------------------------------------------------~~~  240 (301)
                       +++...+..|.++|.++++.+                                                       ..+
T Consensus       187 -~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I  265 (369)
T PF02239_consen  187 -LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI  265 (369)
T ss_dssp             -EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred             -eecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence             233344456767776654332                                                       222


Q ss_pred             eccCCCcEEEEEcCCCCEEEEe----eCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          241 RLLRKPASVLSISLDGKYLAMG----SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l~~~----~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .....+ ..+..+|+++++.+.    ...+.|.++|.++.+....+.... ...+..+.|++||+
T Consensus       266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~  328 (369)
T PF02239_consen  266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGK  328 (369)
T ss_dssp             E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSS
T ss_pred             ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCC
Confidence            221222 446779999999998    345789999999998877764433 44699999999996

...

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=9.5e-16  Score=116.97  Aligned_cols=236  Identities=15%  Similarity=0.165  Sum_probs=170.6

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ..+..+.|+.+   ..++.+|..++       .+++..++.+.-.        ........|.-+-|+  ..++|..+.+
T Consensus         6 ~ti~~~~~Nqd---~~~lsvGs~~G-------yk~~~~~~~~k~~--------~~~~~~~~IvEmLFS--SSLvaiV~~~   65 (391)
T KOG2110|consen    6 PTINFIGFNQD---STLLSVGSKDG-------YKIFSCSPFEKCF--------SKDTEGVSIVEMLFS--SSLVAIVSIK   65 (391)
T ss_pred             cceeeeeeccc---eeEEEccCCCc-------eeEEecCchHHhh--------cccCCCeEEEEeecc--cceeEEEecC
Confidence            34666778866   56777766544       3788887765411        111123345566675  4466665554


Q ss_pred             --CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC---CccEEE
Q 022184           85 --GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---HKSVLD  159 (301)
Q Consensus        85 --~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~---~~~i~~  159 (301)
                        ..+++.+++.....-.        ..-..+|.++.++.  +.|+++-++. |+|||+++.+.+.++..-   ...+.+
T Consensus        66 qpr~Lkv~~~Kk~~~ICe--------~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~A  134 (391)
T KOG2110|consen   66 QPRKLKVVHFKKKTTICE--------IFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCA  134 (391)
T ss_pred             CCceEEEEEcccCceEEE--------EecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEe
Confidence              4588888876543211        12346788888864  4677776554 999999998887766543   345666


Q ss_pred             EEecCCCcEEEEEe--CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce-EEEEEccCceE
Q 022184          160 MDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTWNK  236 (301)
Q Consensus       160 ~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~  236 (301)
                      +++++.+.+++.-+  ..|.|.+||+.+-+....+..| .+.+.+++|+++|..     ++++++.|+ |+|+.+.+++.
T Consensus       135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-~~~lAalafs~~G~l-----lATASeKGTVIRVf~v~~G~k  208 (391)
T KOG2110|consen  135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-KGPLAALAFSPDGTL-----LATASEKGTVIRVFSVPEGQK  208 (391)
T ss_pred             eccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-CCceeEEEECCCCCE-----EEEeccCceEEEEEEcCCccE
Confidence            77777777888643  4689999999999999989865 557999999999998     788888876 78999999999


Q ss_pred             eeeeeccC--CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          237 IGHKRLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       237 ~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      +.+++...  ..|.+++|+|++++|++.+..++|+||.++...
T Consensus       209 l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  209 LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            88776443  468899999999999999999999999997644

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4e-17  Score=123.12  Aligned_cols=196  Identities=12%  Similarity=0.182  Sum_probs=148.5

Q ss_pred             CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCcceeccc--c
Q 022184           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDE--P  151 (301)
Q Consensus        76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~  151 (301)
                      ..+|++-..|.|++||..+++....+       ..+...++.+.|..  ....+.+++.||+|++||++.......+  .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~f-------k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEF-------KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhee-------cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence            56888888999999999987652222       22445667888876  4567899999999999999876554333  2


Q ss_pred             cCC-ccEEEEEecCCCcEEEEEe----CCCcEEEEeCCCCce-EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          152 KAH-KSVLDMDFSLDSEFLATTS----TDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       152 ~~~-~~i~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      .+. .+..+++.+..++.+++|.    .+-.|.+||.|..+. +..+...|...|+++.|+|....+    +++++.||.
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl----LlSGSvDGL  189 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL----LLSGSVDGL  189 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe----EEeecccce
Confidence            333 3677777777788888876    356799999998776 677766666679999999998874    799999999


Q ss_pred             EEEEEccCceE---eeeeeccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          226 LAVYDISTWNK---IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       226 i~~~d~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      |.+||++....   +.....+...|..+.|..++ +.|.+-+......+|+++.+.....+
T Consensus       190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            99999976532   22334456779999998876 55888888999999999987654443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.77  E-value=2.5e-16  Score=116.27  Aligned_cols=156  Identities=16%  Similarity=0.161  Sum_probs=108.9

Q ss_pred             eEEEEeeCCCEEEEeec----------CCeEEEEeCCCc-ceecccc-cCCccEEEEEecCCCcEEEEE--eCCCcEEEE
Q 022184          116 KCLSFSVDGSRFAAGGV----------DGHLRIMHWPSL-RIILDEP-KAHKSVLDMDFSLDSEFLATT--STDGSARIW  181 (301)
Q Consensus       116 ~~~~~s~~~~~l~~~~~----------dg~i~v~d~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~l~~~--~~d~~i~i~  181 (301)
                      ..+.|+|+|++|+.-..          -+...+|.++.. .....+. ...++|.+++|+|+|+.|++.  ..+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46889999988765433          134555555322 2222332 234579999999999987654  356799999


Q ss_pred             eCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEE
Q 022184          182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (301)
Q Consensus       182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  261 (301)
                      |++ ++.+..+.   ...+..+.|+|+|+++.+  ...+...|.|.+||.++.+.+....  ...++.++|+|||+++++
T Consensus        89 d~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~--~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   89 DVK-GKKIFSFG---TQPRNTISWSPDGRFLVL--AGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT  160 (194)
T ss_pred             cCc-ccEeEeec---CCCceEEEECCCCCEEEE--EEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence            996 56556554   235788999999997321  1123446789999999888876554  234789999999999999


Q ss_pred             eeC------CCcEEEEeCCCceeec
Q 022184          262 GSK------DGDICVVDVKKMEINH  280 (301)
Q Consensus       262 ~~~------d~~i~i~~~~~~~~~~  280 (301)
                      ++.      |+.++||+.. |+++.
T Consensus       161 a~t~~r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             EEeccceeccccEEEEEec-CeEeE
Confidence            874      7889999985 54444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=1.7e-18  Score=135.37  Aligned_cols=253  Identities=14%  Similarity=0.160  Sum_probs=191.2

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      -+.+.+..+   +.++++|+..+      .+..++|.  +..+...    ..   -...|.++.|-.+.+++|++ ....
T Consensus       132 PY~~~ytrn---GrhlllgGrKG------HlAa~Dw~--t~~L~~E----i~---v~Etv~Dv~~LHneq~~AVA-QK~y  192 (545)
T KOG1272|consen  132 PYHLDYTRN---GRHLLLGGRKG------HLAAFDWV--TKKLHFE----IN---VMETVRDVTFLHNEQFFAVA-QKKY  192 (545)
T ss_pred             CeeeeecCC---ccEEEecCCcc------ceeeeecc--cceeeee----ee---hhhhhhhhhhhcchHHHHhh-hhce
Confidence            345667655   77888888544      44555554  3333221    11   14679999999988888887 5666


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCC
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS  166 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  166 (301)
                      ++|||-.+.+.         .-+.....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+
T Consensus       193 ~yvYD~~GtEl---------HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N  263 (545)
T KOG1272|consen  193 VYVYDNNGTEL---------HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN  263 (545)
T ss_pred             EEEecCCCcEE---------eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc
Confidence            99999766543         222344678899999998889999999999999999999998888888899999999988


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCC
Q 022184          167 EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP  246 (301)
Q Consensus       167 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  246 (301)
                      ..+-+|...|+|.+|.....+++..+..|. ++|.++++.++|.+     +++.+.|..++|||+++...+..... ..+
T Consensus       264 aVih~GhsnGtVSlWSP~skePLvKiLcH~-g~V~siAv~~~G~Y-----MaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~  336 (545)
T KOG1272|consen  264 AVIHLGHSNGTVSLWSPNSKEPLVKILCHR-GPVSSIAVDRGGRY-----MATTGLDRKVKIWDLRNFYQLHTYRT-PHP  336 (545)
T ss_pred             ceEEEcCCCceEEecCCCCcchHHHHHhcC-CCcceEEECCCCcE-----EeecccccceeEeeeccccccceeec-CCC
Confidence            899999999999999999999888887664 57999999999998     79999999999999999887666655 567


Q ss_pred             cEEEEEcCCCCEEEEeeCCCcEEEEeCC-C----ceeeccccccccCccEEEEEEcc
Q 022184          247 ASVLSISLDGKYLAMGSKDGDICVVDVK-K----MEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       247 v~~~~~s~~~~~l~~~~~d~~i~i~~~~-~----~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      ...+++|..| +||.+ ....|.||.=. .    ++..+.. ... .++|..+.|.|
T Consensus       337 a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~-H~~-~~~V~~l~FcP  389 (545)
T KOG1272|consen  337 ASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMN-HRC-GGPVEDLRFCP  389 (545)
T ss_pred             cccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhh-hcc-Ccccccceecc
Confidence            7889998766 34444 34479999632 1    1222221 122 46888888877

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=3.3e-17  Score=133.30  Aligned_cols=219  Identities=12%  Similarity=0.178  Sum_probs=157.2

Q ss_pred             ccccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           57 YVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        57 ~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      ..+.+|.+.|+.+.|+| +..+||+++.|..|+||.+..+.. ..+.......-...-.+.++.|+|...-|+..+..|.
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~-q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~  151 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHS-QKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS  151 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcc-cccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence            35788999999999999 455889999999999999984432 2221111222223457889999996555655566899


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      +++||+.+++.+..+.+|.+.|.+..|+.||..|++++.|..|+|||.+. ++.++....|....-..+.|.-+-.++ +
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl-i  230 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL-I  230 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh-h
Confidence            99999999999999999999999999999999999999999999999985 566666666655455667787665551 1


Q ss_pred             EEEEEeCCcceEEEEEccCceE-eeeeec-cCCCcEEEEEcCCCCEEEEe-eCCCcEEEEeCCCce
Q 022184          215 FCTVQRGDKALLAVYDISTWNK-IGHKRL-LRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKME  277 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~~  277 (301)
                      ...+..-.-..|++||.+.... +..+.. ....+.-.-|.||.++|+.+ -.++++..+++...+
T Consensus       231 sTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q  296 (1012)
T KOG1445|consen  231 STGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ  296 (1012)
T ss_pred             hcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence            1122223446799999987543 222222 12345555689998766554 456788888887654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.1e-16  Score=121.64  Aligned_cols=251  Identities=9%  Similarity=0.074  Sum_probs=174.2

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccc-cccCCcceEEEECCCCCeEEE
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVC   80 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~   80 (301)
                      +..+.|.++.|+.+   ..++|.|+.+.      ..++|.++..-...  .|...... ..|...|.|++|....+++.+
T Consensus        54 ~H~GCiNAlqFS~N---~~~L~SGGDD~------~~~~W~~de~~~~k--~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S  122 (609)
T KOG4227|consen   54 EHTGCINALQFSHN---DRFLASGGDDM------HGRVWNVDELMVRK--TPKPIGVMEHPHRSNIFSLEFDLENRFLYS  122 (609)
T ss_pred             hhccccceeeeccC---CeEEeecCCcc------eeeeechHHHHhhc--CCCCceeccCccccceEEEEEccCCeeEec
Confidence            34678899999977   78999888544      44899887543222  22333333 345689999999999999999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce-e--cccccCCccE
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-I--LDEPKAHKSV  157 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~--~~~~~~~~~i  157 (301)
                      |..+++|.+.|+++.+......     .....+.|+.+..+|..+.|++.+.++.|.+||.+.... .  .-........
T Consensus       123 G~~~~~VI~HDiEt~qsi~V~~-----~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F  197 (609)
T KOG4227|consen  123 GERWGTVIKHDIETKQSIYVAN-----ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF  197 (609)
T ss_pred             CCCcceeEeeecccceeeeeec-----ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence            9999999999999877522111     111235899999999889999999999999999976542 1  1122233567


Q ss_pred             EEEEecCC-CcEEEEEeCCCcEEEEeCCCCceE-EE--------------------------------------------
Q 022184          158 LDMDFSLD-SEFLATTSTDGSARIWKTEDGVAW-TF--------------------------------------------  191 (301)
Q Consensus       158 ~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~-~~--------------------------------------------  191 (301)
                      ..+.|+|. ..+|++.+..+-+-+||.+..... ..                                            
T Consensus       198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R  277 (609)
T KOG4227|consen  198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR  277 (609)
T ss_pred             eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence            88899995 457888888888999998753210 00                                            


Q ss_pred             ---EeecC-C------CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-----------------------eEee
Q 022184          192 ---LTRNS-D------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-----------------------NKIG  238 (301)
Q Consensus       192 ---~~~~~-~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------------------~~~~  238 (301)
                         ++..+ .      ..+.+++|.-|..      +++++.+-.|++|.+...                       +.+.
T Consensus       278 ~~V~k~D~N~~GY~N~~T~KS~~F~~D~~------v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~  351 (609)
T KOG4227|consen  278 CFVLKSDHNPNGYCNIKTIKSMTFIDDYT------VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT  351 (609)
T ss_pred             ceeEeccCCCCcceeeeeeeeeeeeccee------eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence               00000 0      0122233332222      578888889999987421                       1234


Q ss_pred             eeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          239 HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       239 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      .+++|..-+..+.|+|...+|++.+-.+.++||.--
T Consensus       352 VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  352 VLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             EEecccccccceeecCCcceEeccchhhheeccccc
Confidence            567888899999999999999999999999999753

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=1.1e-15  Score=128.07  Aligned_cols=237  Identities=14%  Similarity=0.088  Sum_probs=149.4

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCC
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  114 (301)
                      +||..+.++...       ..+..+...+....|+|||+.|+..+.+   ..|.+|++.+++...      +.  ...+.
T Consensus       180 ~l~~~d~~g~~~-------~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~------l~--~~~g~  244 (430)
T PRK00178        180 TLQRSDYDGARA-------VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ------IT--NFEGL  244 (430)
T ss_pred             EEEEECCCCCCc-------eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE------cc--CCCCC
Confidence            566666554321       2234556788999999999999876643   368888987765311      11  11233


Q ss_pred             eeEEEEeeCCCEEEEe-ecCC--eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCce
Q 022184          115 QKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVA  188 (301)
Q Consensus       115 v~~~~~s~~~~~l~~~-~~dg--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~  188 (301)
                      .....|+|||+.|+.. ..+|  .|+++|+.+++.. .+..+........|+|||+.|+..+. ++  .|.++|+.+++.
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            4568999999988744 4444  6888899877653 34444445667889999998776653 33  577778877764


Q ss_pred             EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC---
Q 022184          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---  265 (301)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---  265 (301)
                      ..... . ........|+|+|+.+++  .........|.++|+.+++... +.. ........|+|||++++..+.+   
T Consensus       324 ~~lt~-~-~~~~~~~~~Spdg~~i~~--~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~  397 (430)
T PRK00178        324 ERVTF-V-GNYNARPRLSADGKTLVM--VHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGR  397 (430)
T ss_pred             EEeec-C-CCCccceEECCCCCEEEE--EEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCc
Confidence            33322 1 122446789999997422  1111223468899998876432 222 2222356899999999887654   


Q ss_pred             CcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          266 GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       266 ~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      ..|.++++...... .+ ..+ .+.+...+|+|-
T Consensus       398 ~~l~~~~~~g~~~~-~l-~~~-~g~~~~p~ws~~  428 (430)
T PRK00178        398 GVLMLVSINGRVRL-PL-PTA-QGEVREPSWSPY  428 (430)
T ss_pred             eEEEEEECCCCceE-EC-cCC-CCCcCCCccCCC
Confidence            35777787654432 23 223 456788888873

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=1.5e-15  Score=126.02  Aligned_cols=242  Identities=16%  Similarity=0.105  Sum_probs=146.4

Q ss_pred             eeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEE---EEecCC--cEEEEEEcCCccccccccccCCCCCC
Q 022184           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV---CSTTNG--GCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        37 ~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~---~~~~d~--~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      -+||..+.++...       ..+......+.+-+|+|||+.++   +...++  .|++.++.+++.. .     +.  ..
T Consensus       165 ~~l~~~d~dG~~~-------~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~-----lt--~~  229 (428)
T PRK01029        165 GELWSVDYDGQNL-------RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-K-----IL--AL  229 (428)
T ss_pred             ceEEEEcCCCCCc-------eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-E-----ee--cC
Confidence            3677776665432       12333455677889999998532   333443  5777777766431 1     11  12


Q ss_pred             CCCeeEEEEeeCCCEEEEeec-CC----eEEEEeCCCc--ceecccccCC-ccEEEEEecCCCcEEEEEe-CCCcEEEE-
Q 022184          112 AGPQKCLSFSVDGSRFAAGGV-DG----HLRIMHWPSL--RIILDEPKAH-KSVLDMDFSLDSEFLATTS-TDGSARIW-  181 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~-dg----~i~v~d~~~~--~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~d~~i~i~-  181 (301)
                      .+.....+|||||+.|+..+. +|    .+..|++..+  .....+.... ......+|+|||+.|+..+ .++...+| 
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~  309 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI  309 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence            234456899999998887653 22    3444676643  1222232222 3346789999999888766 46655555 


Q ss_pred             -eCCC-CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEE
Q 022184          182 -KTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL  259 (301)
Q Consensus       182 -d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  259 (301)
                       ++.. +.....+... ...+....|+|||+.+++  .........|.+||+.+++... +......+..+.|+|||++|
T Consensus       310 ~~~~~~g~~~~~lt~~-~~~~~~p~wSPDG~~Laf--~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L  385 (428)
T PRK01029        310 MQIDPEGQSPRLLTKK-YRNSSCPAWSPDGKKIAF--CSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHL  385 (428)
T ss_pred             EECcccccceEEeccC-CCCccceeECCCCCEEEE--EEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEE
Confidence             4432 2333444332 234678899999997322  1111224579999998887643 33233456789999999988


Q ss_pred             EEeeC---CCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          260 AMGSK---DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       260 ~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      +....   ...|+++|+.+++......  . .+.+...+|+|-.
T Consensus       386 ~f~~~~~g~~~L~~vdl~~g~~~~Lt~--~-~g~~~~p~Ws~~~  426 (428)
T PRK01029        386 VYSAGNSNESELYLISLITKKTRKIVI--G-SGEKRFPSWGAFP  426 (428)
T ss_pred             EEEECCCCCceEEEEECCCCCEEEeec--C-CCcccCceecCCC
Confidence            76543   3568899998887655542  2 4567788998853

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.4e-16  Score=132.76  Aligned_cols=179  Identities=21%  Similarity=0.197  Sum_probs=118.5

Q ss_pred             CCCCeeEEEEeeCCCEEEEeecC---CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEE-EEeCCCcEEEEe--CC
Q 022184          111 DAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWK--TE  184 (301)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d--~~  184 (301)
                      +...+.+.+|+|||+.|+..+.+   ..|++||+.+++.. .+....+.....+|+|||+.|+ +.+.++...||.  +.
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~  272 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD  272 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence            45678899999999999887643   45999999888653 2333334567899999999876 456777766665  44


Q ss_pred             CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEE--EccCceEeeeeeccCCCcEEEEEcCCCCEEEEe
Q 022184          185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY--DISTWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (301)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  262 (301)
                      .+. ...+..+ ........|+|||+.++    +++..++...+|  ++.+++.. .+..........+|||||++|+..
T Consensus       273 ~~~-~~~lt~~-~~~~~~~~wSpDG~~l~----f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~  345 (427)
T PRK02889        273 GSG-LRRLTQS-SGIDTEPFFSPDGRSIY----FTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYI  345 (427)
T ss_pred             CCC-cEECCCC-CCCCcCeEEcCCCCEEE----EEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEE
Confidence            443 3444332 23456788999999732    233334444555  54544432 222223334567899999999987


Q ss_pred             eCCC---cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          263 SKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       263 ~~d~---~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +.++   .|.+||+.+++......    ......+.|+|||+
T Consensus       346 s~~~g~~~I~v~d~~~g~~~~lt~----~~~~~~p~~spdg~  383 (427)
T PRK02889        346 SRVGGAFKLYVQDLATGQVTALTD----TTRDESPSFAPNGR  383 (427)
T ss_pred             EccCCcEEEEEEECCCCCeEEccC----CCCccCceECCCCC
Confidence            7654   59999999887654432    22346789999986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=9.7e-17  Score=123.48  Aligned_cols=221  Identities=11%  Similarity=0.017  Sum_probs=160.6

Q ss_pred             CceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec
Q 022184           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (301)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (301)
                      +.....+.+|.+.|+++.|+.++++|++|+.|..+++|.++..-.......-......|...|.|++|....+++++|..
T Consensus        46 ~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~  125 (609)
T KOG4227|consen   46 PFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER  125 (609)
T ss_pred             chhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence            44556678999999999999999999999999999999997532211111111222235588999999999999999999


Q ss_pred             CCeEEEEeCCCcceecccccCC---ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEE-EeecCCCCeeEEEEcc
Q 022184          133 DGHLRIMHWPSLRIILDEPKAH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTF-LTRNSDEKIELCRFSK  207 (301)
Q Consensus       133 dg~i~v~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~-~~~~~~~~v~~~~~~~  207 (301)
                      +++|..-|+++.+.+... .+.   +.|+.+..+|..+.|++.+.++.|.+||.+... .... +....+.....+.|+|
T Consensus       126 ~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             cceeEeeecccceeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            999999999998876544 333   489999999999999999999999999998755 2222 2223344578899999


Q ss_pred             CCCcceEEEEEEeCCcceEEEEEccCceEe-ee---eeccC---CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKI-GH---KRLLR---KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~---~~~~~---~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~  278 (301)
                      ....+    +++.+..+-+.+||.+..... ..   +.+..   ..-..+.|+|+|..+.+--....=.+||+-+..+
T Consensus       205 ~~P~L----i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~  278 (609)
T KOG4227|consen  205 ETPAL----ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC  278 (609)
T ss_pred             CCcee----EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence            88763    577777888999999865431 11   11111   1224578999998887765544555677665443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.75  E-value=1.4e-15  Score=132.12  Aligned_cols=269  Identities=12%  Similarity=0.105  Sum_probs=183.2

Q ss_pred             CCCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEE
Q 022184            1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (301)
Q Consensus         1 ~~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~   80 (301)
                      ||+...|..++-+++  ...++++|+      .||++++|+...-.+.. .....+.++.-...++.++...+.++.+|+
T Consensus      1045 ~Ehs~~v~k~a~s~~--~~s~FvsgS------~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSE--HTSLFVSGS------DDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred             hhccccccceeecCC--CCceEEEec------CCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence            355666666666643  357888866      78888999986543321 111223334445778999999999999999


Q ss_pred             EecCCcEEEEEEcCCccccccccc-cCCCCCCCCCe-eEEEEee-CCC-EEEEeecCCeEEEEeCCCcceeccc--ccCC
Q 022184           81 STTNGGCKLFEVYGGATDINLLAK-KMPPLQDAGPQ-KCLSFSV-DGS-RFAAGGVDGHLRIMHWPSLRIILDE--PKAH  154 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~v-~~~~~s~-~~~-~l~~~~~dg~i~v~d~~~~~~~~~~--~~~~  154 (301)
                      ++.||.|++.+++........... ........+.+ ..-+|.. ... .++.+..-+.|..||++.......+  ...+
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence            999999999999874322211111 12222223333 3334443 344 6888888899999999876654433  3456


Q ss_pred             ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC-CcceEEEEEccC
Q 022184          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDIST  233 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~  233 (301)
                      +.|++++.+|.+.+++.|+..|.+.+||+|-+.++..+..+...+++.+..+|-....-.. +.++. ..+.|.+|++.+
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~-vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS-VSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE-EEecccCCCceeeeeccc
Confidence            7899999999999999999999999999999999999987777788888887765521111 23333 678899999998


Q ss_pred             ceEeeeeecc-C----------------C--CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184          234 WNKIGHKRLL-R----------------K--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       234 ~~~~~~~~~~-~----------------~--~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                      +.....+... +                .  ......+...+..+.+|+.|..|+.||....+..
T Consensus      1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            8654444332 1                0  1112233334568999999999999999766544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=4.7e-16  Score=130.16  Aligned_cols=198  Identities=14%  Similarity=0.054  Sum_probs=133.3

Q ss_pred             cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec---CCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|.++|.++...        .....+...+...+|+|||+.|+..+.   +..|++||+.+++.. .+....+.+...+|
T Consensus       183 ~l~~~d~dg~~~--------~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~  253 (435)
T PRK05137        183 RLAIMDQDGANV--------RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRF  253 (435)
T ss_pred             EEEEECCCCCCc--------EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEE
Confidence            677777755432        111235568999999999999988764   468999999887653 34444556778999


Q ss_pred             cCCCcEEE-EEeCCCc--EEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184          163 SLDSEFLA-TTSTDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (301)
Q Consensus       163 ~~~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  239 (301)
                      +|||+.|+ +.+.++.  |.+||+.+++.. .+..+ ........|+|||+.+++  .........|+++|+.+++.. .
T Consensus       254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~-~~~~~~~~~spDG~~i~f--~s~~~g~~~Iy~~d~~g~~~~-~  328 (435)
T PRK05137        254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDS-PAIDTSPSYSPDGSQIVF--ESDRSGSPQLYVMNADGSNPR-R  328 (435)
T ss_pred             CCCCCEEEEEEecCCCceEEEEECCCCceE-EccCC-CCccCceeEcCCCCEEEE--EECCCCCCeEEEEECCCCCeE-E
Confidence            99999775 4555554  777798877653 34332 334667899999997321  111222347888998776543 3


Q ss_pred             eeccCCCcEEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          240 KRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +......+..+.|+|||++|+....+   ..|.+||+.++...... .   ...+..+.|+|||+
T Consensus       329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~---~~~~~~p~~spDG~  389 (435)
T PRK05137        329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-S---GFLVEGPTWAPNGR  389 (435)
T ss_pred             eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-C---CCCCCCCeECCCCC
Confidence            33334556678999999999887643   36888998665543222 2   23467889999986

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1.2e-15  Score=130.77  Aligned_cols=273  Identities=12%  Similarity=0.147  Sum_probs=173.2

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--CCCeEEEEecC
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTN   84 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d   84 (301)
                      -..+.|+|-   ...+++++      ....+++|+|..... +..  ...  -......|+.+.+-.  |...+++++.|
T Consensus      1067 pk~~~~hpf---~p~i~~ad------~r~~i~vwd~e~~~~-l~~--F~n--~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1067 PKTLKFHPF---EPQIAAAD------DRERIRVWDWEKGRL-LNG--FDN--GAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred             CceeeecCC---CceeEEcC------CcceEEEEecccCce-ecc--ccC--CCCCCCccceeeeecccchhheeeeccC
Confidence            344556654   33455533      234568999876542 111  000  012245688888855  45588999999


Q ss_pred             CcEEEEEEcCCc-cccccccc--cCCCC-C-CCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC-ccEE
Q 022184           85 GGCKLFEVYGGA-TDINLLAK--KMPPL-Q-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVL  158 (301)
Q Consensus        85 ~~i~~w~~~~~~-~~~~~~~~--~~~~~-~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~  158 (301)
                      |.|+||+-.... ...++...  .+... . ..+.-.-+.|.....+|+++++-..|+|||.........+.... ..++
T Consensus      1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred             ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence            999999864332 22222111  01100 0 11111456777765566666668899999998877776665443 3577


Q ss_pred             EEEecC-CCcEEEEEeCCCcEEEEeCCCCce---EEEEeecCC-CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          159 DMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       159 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      ++.-+- .|+.+++|..||.|++||.|....   +.....|.. .+|..+.+.+.|-..    +++++.+|.|++||++.
T Consensus      1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~e----lvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGE----LVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcc----eeeeccCCeEEEEeccc
Confidence            665543 578999999999999999986543   333333322 238888898876542    68999999999999998


Q ss_pred             ceEeee--eecc---CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc----ccccCccEEEEEEcc
Q 022184          234 WNKIGH--KRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----RLHLGTSIALVEFCP  298 (301)
Q Consensus       234 ~~~~~~--~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----~~~~~~~v~~~~~sp  298 (301)
                      ......  +..|   ++..+++..+++...+|+|+. +.|+||++...++.....    -+...+.+.+++|+|
T Consensus      1289 ~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred             CcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecc
Confidence            432221  1222   235899999999999999998 899999996543322111    111246789999998

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.7e-15  Score=126.57  Aligned_cols=221  Identities=15%  Similarity=0.144  Sum_probs=138.4

Q ss_pred             cccCCcceEEEECCCCCeEEEEecC-C--cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEE-eecCCe
Q 022184           60 DESEGDPMTIAVNPSGDDFVCSTTN-G--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGH  135 (301)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~d-~--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~  135 (301)
                      ..+...+.+..|+|||+.|+..+.+ +  .|++||+.+++...      +...  .+.....+|+|||+.|+. .+.++.
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~------lt~~--~g~~~~~~wSPDG~~La~~~~~~g~  285 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK------VTSF--PGINGAPRFSPDGKKLALVLSKDGQ  285 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE------ecCC--CCCcCCeeECCCCCEEEEEEeCCCC
Confidence            3456778899999999999876543 3  58888887664311      1111  123346899999998865 455564


Q ss_pred             --EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC
Q 022184          136 --LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (301)
Q Consensus       136 --i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (301)
                        |+++|+.+++. ..+..+.......+|+|||+.|+..+. ++  .|.++|+.+++... +... .......+|+|||+
T Consensus       286 ~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~-g~~~~~~~~SpDG~  362 (448)
T PRK04792        286 PEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE-GEQNLGGSITPDGR  362 (448)
T ss_pred             eEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-CCCCcCeeECCCCC
Confidence              77888877765 334444445677899999998876653 33  46677887776543 3211 12234578999999


Q ss_pred             cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCceeecccccccc
Q 022184          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLHL  287 (301)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~i~~~~~~~~~~~~~~~~~  287 (301)
                      ++++  .........|.++|+.+++... +... .......|+|||+.|+..+.+ +  .+++++.. +.....+ ..+ 
T Consensus       363 ~l~~--~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l-~~~-  435 (448)
T PRK04792        363 SMIM--VNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARL-PAG-  435 (448)
T ss_pred             EEEE--EEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC-cCC-
Confidence            7432  1122223367778888776432 2221 122345899999988876644 3  37777874 4444434 233 


Q ss_pred             CccEEEEEEcc
Q 022184          288 GTSIALVEFCP  298 (301)
Q Consensus       288 ~~~v~~~~~sp  298 (301)
                      .+.+...+|+|
T Consensus       436 ~g~~~~p~Wsp  446 (448)
T PRK04792        436 QGEVKSPAWSP  446 (448)
T ss_pred             CCCcCCCccCC
Confidence            45678889987

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=4.9e-16  Score=133.12  Aligned_cols=253  Identities=14%  Similarity=0.167  Sum_probs=168.5

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCc---ceeeeCCce-eccccccCCcceEEEECCCCCeEEE
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT---TSVYTSPLV-TYVFDESEGDPMTIAVNPSGDDFVC   80 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~~   80 (301)
                      ..|+.+.+..+.+ ..++.+|.      .||.|+||+--...   ..+...... .-.+.+..+.=.-+.|.....+|++
T Consensus      1110 t~Vs~l~liNe~D-~aLlLtas------~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~ 1182 (1387)
T KOG1517|consen 1110 TRVSDLELINEQD-DALLLTAS------SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLV 1182 (1387)
T ss_pred             Cccceeeeecccc-hhheeeec------cCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEe
Confidence            4566777764432 34444444      78889999754432   122111110 1111222222355778876667777


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcc---eecccccCCcc
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAHKS  156 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~  156 (301)
                      ++.-..|+|||.........+...      ....++++.-+- .|+.|++|..||.|++||.+...   .+.....|...
T Consensus      1183 tGd~r~IRIWDa~~E~~~~diP~~------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1183 TGDVRSIRIWDAHKEQVVADIPYG------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred             cCCeeEEEEEecccceeEeecccC------CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence            777889999999876653333221      234556655443 57999999999999999987543   24445566654


Q ss_pred             --EEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEE--eecC--CCCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184          157 --VLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFL--TRNS--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (301)
Q Consensus       157 --i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (301)
                        |..+.+.+.|- .|++++.||.|++||+|.......+  ..+.  +...+++..+++...     +++|+. +.|+||
T Consensus      1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapi-----iAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPI-----IASGSA-QLIKIY 1330 (1387)
T ss_pred             ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCe-----eeecCc-ceEEEE
Confidence              99999999775 5999999999999999985322222  2222  334889999999885     566665 899999


Q ss_pred             EccCceEeeeeec-------cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          230 DISTWNKIGHKRL-------LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       230 d~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      ++...+ +..++.       ....+.+++|+|..-++|+|+.|..|.||......
T Consensus      1331 ~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1331 SLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            987533 222222       12568999999999999999999999999987654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=1.5e-14  Score=108.56  Aligned_cols=193  Identities=19%  Similarity=0.253  Sum_probs=133.7

Q ss_pred             cEEE-ecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccc
Q 022184           20 NLVV-LGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (301)
Q Consensus        20 ~~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~   98 (301)
                      +++| +||+...-...|++.||+ |......     .+..   ...+|.++.+.++  +|++. ..+.|+||.....-..
T Consensus        59 N~laLVGGg~~pky~pNkviIWD-D~k~~~i-----~el~---f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~  126 (346)
T KOG2111|consen   59 NYLALVGGGSRPKYPPNKVIIWD-DLKERCI-----IELS---FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL  126 (346)
T ss_pred             ceEEEecCCCCCCCCCceEEEEe-cccCcEE-----EEEE---eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh
Confidence            4444 455544445778899998 3333221     1222   3678999999764  46655 4667999999854332


Q ss_pred             cccccccCCCCCCCCCeeEEEEeeCCCEEEE-eecCCeEEEEeCCCcce--ecccccCCccEEEEEecCCCcEEEEEeCC
Q 022184           99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTD  175 (301)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  175 (301)
                      .....    .........+++-..+..+||. |-.-|.|+|-|+...+.  ...+..|.+.|.+++.+.+|..+||+|..
T Consensus       127 l~~~e----t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStk  202 (346)
T KOG2111|consen  127 LHVIE----TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTK  202 (346)
T ss_pred             eeeee----cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccC
Confidence            22111    1111223333332223444444 33469999999976554  35677899999999999999999999998


Q ss_pred             Cc-EEEEeCCCCceEEEEeecC-CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          176 GS-ARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       176 ~~-i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      |+ |||||..+|+.+..+..+. ...+.+++|||+..+     ++.+++.|+|++|.++.
T Consensus       203 GTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~-----LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  203 GTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW-----LAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             cEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE-----EEEEcCCCeEEEEEeec
Confidence            87 8999999999999987543 346999999999998     78999999999998865

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=5.9e-16  Score=129.38  Aligned_cols=197  Identities=18%  Similarity=0.123  Sum_probs=130.7

Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---CeEEEEeCCCcceecccccCCccEEEEE
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      ..|.+||......        .....+...+...+|+|||+.|+..+.+   ..|++||+.+++.. .+....+....++
T Consensus       184 ~~l~i~D~~g~~~--------~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~  254 (433)
T PRK04922        184 YALQVADSDGYNP--------QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPS  254 (433)
T ss_pred             EEEEEECCCCCCc--------eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCce
Confidence            3588888764432        1122345678899999999999887643   46999999887653 2323334455789


Q ss_pred             ecCCCcEEE-EEeCCC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc--eEEEEEccCceE
Q 022184          162 FSLDSEFLA-TTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNK  236 (301)
Q Consensus       162 ~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~  236 (301)
                      |+|||+.|+ +.+.++  .|.+||+.+++... +..+ .......+|+|||+.++    ++...++  .|.++|+.+++.
T Consensus       255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~-~~~~~~~~~spDG~~l~----f~sd~~g~~~iy~~dl~~g~~  328 (433)
T PRK04922        255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNH-FGIDTEPTWAPDGKSIY----FTSDRGGRPQIYRVAASGGSA  328 (433)
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccC-CCCccceEECCCCCEEE----EEECCCCCceEEEEECCCCCe
Confidence            999999775 445555  59999998876533 3322 23356789999999732    2333333  477778776654


Q ss_pred             eeeeeccCCCcEEEEEcCCCCEEEEeeCCC---cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      . .+.........++|+|||++|+..+.++   .|.+||+.+++..... .   ........|+|||+
T Consensus       329 ~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~---~~~~~~p~~spdG~  391 (433)
T PRK04922        329 E-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-P---GSLDESPSFAPNGS  391 (433)
T ss_pred             E-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC-C---CCCCCCceECCCCC
Confidence            3 2322334455789999999998875443   5999999888765432 2   22345679999986

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.73  E-value=2.9e-15  Score=125.34  Aligned_cols=218  Identities=16%  Similarity=0.131  Sum_probs=139.7

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecC-
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVD-  133 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d-  133 (301)
                      +..+...+...+|+|+|++|+.+..+   ..|++|++.+++...      .  ..+...+.+++|+|||+.|+.. +.+ 
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~------~--~~~~~~~~~~~~spDg~~l~~~~~~~~  256 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK------V--ASFPGMNGAPAFSPDGSKLAVSLSKDG  256 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE------e--ecCCCCccceEECCCCCEEEEEECCCC
Confidence            34456678899999999999987654   479999998764311      1  1123445678999999877654 433 


Q ss_pred             -CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCC
Q 022184          134 -GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (301)
Q Consensus       134 -g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (301)
                       ..|++||+.+++.. .+..+........|+||++.|+..+. ++  .|.++|+.+++.. .+... ......+.|+|+|
T Consensus       257 ~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~-~~~~~~~~~spdg  333 (417)
T TIGR02800       257 NPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR-GGYNASPSWSPDG  333 (417)
T ss_pred             CccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccCeEECCCC
Confidence             35888998876543 33334444556789999998877654 33  5788888776643 33322 2346788999999


Q ss_pred             CcceEEEEEEeCCc---ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC---cEEEEeCCCceeecccc
Q 022184          210 TKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSK  283 (301)
Q Consensus       210 ~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~  283 (301)
                      +++     +....+   ..|.+||+.++... .+.. ........|+|||++|+..+.++   .+.+.+..... ...+ 
T Consensus       334 ~~i-----~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~-~~~~-  404 (417)
T TIGR02800       334 DLI-----AFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF-RARL-  404 (417)
T ss_pred             CEE-----EEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce-eeEC-
Confidence            973     222223   37999998875432 2222 22345568999999988887654   46666654433 3333 


Q ss_pred             ccccCccEEEEEEc
Q 022184          284 RLHLGTSIALVEFC  297 (301)
Q Consensus       284 ~~~~~~~v~~~~~s  297 (301)
                      ..+ .+.+..++|+
T Consensus       405 ~~~-~g~~~~~~ws  417 (417)
T TIGR02800       405 PLG-NGDVREPAWS  417 (417)
T ss_pred             CCC-CCCcCCCCCC
Confidence            223 4456666664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.5e-15  Score=126.43  Aligned_cols=221  Identities=12%  Similarity=0.064  Sum_probs=134.0

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE-e
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-T   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~   82 (301)
                      ..++.+.+|+||   ++.++.....   ....  .+|.++..+....       .+....+.+..++|+|||+.|+.. +
T Consensus       198 ~~~~~~p~wSPD---G~~la~~s~~---~g~~--~i~i~dl~~G~~~-------~l~~~~~~~~~~~~SPDG~~La~~~~  262 (429)
T PRK03629        198 PQPLMSPAWSPD---GSKLAYVTFE---SGRS--ALVIQTLANGAVR-------QVASFPRHNGAPAFSPDGSKLAFALS  262 (429)
T ss_pred             CCceeeeEEcCC---CCEEEEEEec---CCCc--EEEEEECCCCCeE-------EccCCCCCcCCeEECCCCCEEEEEEc
Confidence            346788999988   4555542210   0122  3444443332211       111223334568999999988865 3


Q ss_pred             cCC--cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC-C--eEEEEeCCCcceecccccCCccE
Q 022184           83 TNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-G--HLRIMHWPSLRIILDEPKAHKSV  157 (301)
Q Consensus        83 ~d~--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~i  157 (301)
                      .++  .|++||+++++.. .       ...+...+....|+|||+.|+..+.+ +  .|+++|+.+++. ..+.......
T Consensus       263 ~~g~~~I~~~d~~tg~~~-~-------lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~  333 (429)
T PRK03629        263 KTGSLNLYVMDLASGQIR-Q-------VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQN  333 (429)
T ss_pred             CCCCcEEEEEECCCCCEE-E-------ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCc
Confidence            444  5888888766431 1       11223456788999999998877754 4  455557666554 2333333455


Q ss_pred             EEEEecCCCcEEEEEeCC---CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184          158 LDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  234 (301)
                      ....|+|||++|+..+.+   ..|.+||+.+++.. .+...  .......|+|||+.+++  ....+....+.++++.. 
T Consensus       334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~--~s~~~~~~~l~~~~~~G-  407 (429)
T PRK03629        334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIY--SSSQGMGSVLNLVSTDG-  407 (429)
T ss_pred             cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEE--EEcCCCceEEEEEECCC-
Confidence            678999999998876643   35888999887643 34322  12456789999997321  11122234578888854 


Q ss_pred             eEeeeeeccCCCcEEEEEcC
Q 022184          235 NKIGHKRLLRKPASVLSISL  254 (301)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~  254 (301)
                      +....+..+.+.+...+|+|
T Consensus       408 ~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        408 RFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCeEECccCCCCcCCcccCC
Confidence            44445666777888899987

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.6e-15  Score=127.43  Aligned_cols=220  Identities=14%  Similarity=0.141  Sum_probs=164.5

Q ss_pred             eccccccCCcceEEEECCCCC---eEEEEecCCcEEEEEEcCCcc-----------------------------------
Q 022184           56 TYVFDESEGDPMTIAVNPSGD---DFVCSTTNGGCKLFEVYGGAT-----------------------------------   97 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~---~l~~~~~d~~i~~w~~~~~~~-----------------------------------   97 (301)
                      ...+.+|..++..+.+.|...   ++.+++.||.|++||...+..                                   
T Consensus        50 i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~  129 (792)
T KOG1963|consen   50 ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSI  129 (792)
T ss_pred             hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeeccccee
Confidence            447899999999999988554   677899999999999877654                                   


Q ss_pred             -----------------------------------------------------------cc--ccccccCCCCCCCCCee
Q 022184           98 -----------------------------------------------------------DI--NLLAKKMPPLQDAGPQK  116 (301)
Q Consensus        98 -----------------------------------------------------------~~--~~~~~~~~~~~~~~~v~  116 (301)
                                                                                 ..  +..........|.-.++
T Consensus       130 ~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t  209 (792)
T KOG1963|consen  130 LTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNIT  209 (792)
T ss_pred             eeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccce
Confidence                                                                       00  00000111122444578


Q ss_pred             EEEEeeCCCEEEEeecCCeEEEEeCCC--c--ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 022184          117 CLSFSVDGSRFAAGGVDGHLRIMHWPS--L--RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL  192 (301)
Q Consensus       117 ~~~~s~~~~~l~~~~~dg~i~v~d~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  192 (301)
                      +.++||+++++++|..||.|.+|.--.  .  .....+.-|+.+|.+++|+++|.+|++|+..+.+.+|.+.+++  ..+
T Consensus       210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqf  287 (792)
T KOG1963|consen  210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQF  287 (792)
T ss_pred             eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--ccc
Confidence            999999999999999999999995321  1  1223455688899999999999999999999999999999988  444


Q ss_pred             eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec-----------cCCCcEEEEEcCCCCEEEE
Q 022184          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-----------LRKPASVLSISLDGKYLAM  261 (301)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~  261 (301)
                      ...-+.+|..+.++||+..     ......|++|.+..+.+.+....+.+           ..+-.+.++++|.-+.++.
T Consensus       288 LPRLgs~I~~i~vS~ds~~-----~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl  362 (792)
T KOG1963|consen  288 LPRLGSPILHIVVSPDSDL-----YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL  362 (792)
T ss_pred             ccccCCeeEEEEEcCCCCe-----EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence            4445678999999999997     45556699999998765443322221           1344677899997778888


Q ss_pred             eeCCCcEEEEeCCCceeeccc
Q 022184          262 GSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       262 ~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      .+..|.|.+||+.+.+.+..+
T Consensus       363 n~~~g~vQ~ydl~td~~i~~~  383 (792)
T KOG1963|consen  363 NGHPGHVQFYDLYTDSTIYKL  383 (792)
T ss_pred             cCCCceEEEEeccccceeeeE
Confidence            889999999999887655443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=3.4e-17  Score=136.85  Aligned_cols=240  Identities=15%  Similarity=0.203  Sum_probs=173.6

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ..|+|+.|-..   +.++++|.      .|..++||..+...        ......||.+.|+.++.+.+..++++++.|
T Consensus       191 naVyca~fDrt---g~~Iitgs------dd~lvKiwS~et~~--------~lAs~rGhs~ditdlavs~~n~~iaaaS~D  253 (1113)
T KOG0644|consen  191 NAVYCAIFDRT---GRYIITGS------DDRLVKIWSMETAR--------CLASCRGHSGDITDLAVSSNNTMIAAASND  253 (1113)
T ss_pred             hheeeeeeccc---cceEeecC------ccceeeeeeccchh--------hhccCCCCccccchhccchhhhhhhhcccC
Confidence            45899999866   77888877      55567999854322        234578999999999999999999999999


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc-----ccCCc----
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-----PKAHK----  155 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-----~~~~~----  155 (301)
                      ..|++|.+..+....       -..+|.+.|++++|+|-.    +.+.||++++||.+ .......     ....+    
T Consensus       254 ~vIrvWrl~~~~pvs-------vLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s  321 (1113)
T KOG0644|consen  254 KVIRVWRLPDGAPVS-------VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDS  321 (1113)
T ss_pred             ceEEEEecCCCchHH-------HHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceee
Confidence            999999999887522       223588999999999954    67789999999986 1110000     00001    


Q ss_pred             ----------------------cEEEEEecCCCcEEEEEe-----------CCCcEEEEeCCCCceEEEEeecCCCCeeE
Q 022184          156 ----------------------SVLDMDFSLDSEFLATTS-----------TDGSARIWKTEDGVAWTFLTRNSDEKIEL  202 (301)
Q Consensus       156 ----------------------~i~~~~~~~~~~~l~~~~-----------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~  202 (301)
                                            .+..++|....-.+++.+           .+-.+++|++.++...+.+.++.. .+..
T Consensus       322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~~yv  400 (1113)
T KOG0644|consen  322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-EVYV  400 (1113)
T ss_pred             eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-ceee
Confidence                                  122333333333333333           233467777777777776665544 5889


Q ss_pred             EEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~  278 (301)
                      +.++|-...+    ..+++.||...|||+-.+.+++........+..-+||+||..++....-|.++|.....++.
T Consensus       401 Ld~Hpfn~ri----~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  401 LDVHPFNPRI----AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             eeecCCCcHh----hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            9999987764    57789999999999998888766655556677789999999999998889999998765543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.72  E-value=2.1e-15  Score=111.33  Aligned_cols=158  Identities=15%  Similarity=0.223  Sum_probs=110.1

Q ss_pred             eEEEECCCCCeEEEEec----------CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe--ecCC
Q 022184           67 MTIAVNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG--GVDG  134 (301)
Q Consensus        67 ~~~~~~~~~~~l~~~~~----------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg  134 (301)
                      ..+.|+|+|++|+.-..          -+...+|.++.......     ...+...++|.+++|+|+|+.|++.  ..++
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~-----~i~l~~~~~I~~~~WsP~g~~favi~g~~~~   83 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE-----SIELKKEGPIHDVAWSPNGNEFAVIYGSMPA   83 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc-----eeeccCCCceEEEEECcCCCEEEEEEccCCc
Confidence            36889999998775432          23466777754433211     1122234579999999999987654  4567


Q ss_pred             eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      .|.+||++ ++.+..+.  ...+..+.|+|+|++|++++.+   |.+.+||.++.+.+....  +. .+..++|+|+|++
T Consensus        84 ~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr~  157 (194)
T PF08662_consen   84 KVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSPDGRY  157 (194)
T ss_pred             ccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcCCCCE
Confidence            99999996 55555553  4577899999999999998754   569999999888877664  22 3789999999998


Q ss_pred             ceEEEEEE---eCCcceEEEEEccCceEee
Q 022184          212 PFLFCTVQ---RGDKALLAVYDISTWNKIG  238 (301)
Q Consensus       212 ~~~~~~~~---~~~~~~i~~~d~~~~~~~~  238 (301)
                      +..  ..+   -..|+.++||+.. |+.+.
T Consensus       158 ~~t--a~t~~r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  158 LAT--ATTSPRLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             EEE--EEeccceeccccEEEEEec-CeEeE
Confidence            321  111   1247889999985 45443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.72  E-value=3.7e-13  Score=109.23  Aligned_cols=255  Identities=15%  Similarity=0.204  Sum_probs=160.2

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-CCcEEEEEEcCCccccccc--c----c-
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLL--A----K-  104 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~~w~~~~~~~~~~~~--~----~-  104 (301)
                      ..+.+..|.++.+...+...    ............++++|++++|+++.. +|.+.++++..........  .    . 
T Consensus        60 ~~g~v~~~~i~~~~g~L~~~----~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g  135 (345)
T PF10282_consen   60 DSGGVSSYRIDPDTGTLTLL----NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSG  135 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEE----EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEE
T ss_pred             CCCCEEEEEECCCcceeEEe----eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCC
Confidence            45677888888774444221    111113445678999999999998874 7999999998742211111  0    0 


Q ss_pred             cCCCCCCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcc--ee--ccc-ccCCccEEEEEecCCCcEEEEEe-CCCc
Q 022184          105 KMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLR--II--LDE-PKAHKSVLDMDFSLDSEFLATTS-TDGS  177 (301)
Q Consensus       105 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~--~~--~~~-~~~~~~i~~~~~~~~~~~l~~~~-~d~~  177 (301)
                      .....+......++.|+|+++++++... ...|.+|++....  ..  ..+ .........++|+|++++++... .+++
T Consensus       136 ~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~  215 (345)
T PF10282_consen  136 PNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT  215 (345)
T ss_dssp             SSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             CcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc
Confidence            0011123356789999999998887643 4579999987654  21  111 12334678999999999776554 6778


Q ss_pred             EEEEeCC--CCce--EEEEeec---C--CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC--c--eEeeeeeccC
Q 022184          178 ARIWKTE--DGVA--WTFLTRN---S--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--W--NKIGHKRLLR  244 (301)
Q Consensus       178 i~i~d~~--~~~~--~~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~--~~~~~~~~~~  244 (301)
                      |.++++.  ++..  +..+...   .  ......++++|||+++|    ++......|.+|++..  +  +.+.......
T Consensus       216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly----vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G  291 (345)
T PF10282_consen  216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY----VSNRGSNSISVFDLDPATGTLTLVQTVPTGG  291 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE----EEECTTTEEEEEEECTTTTTEEEEEEEEESS
T ss_pred             EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEE----EEeccCCEEEEEEEecCCCceEEEEEEeCCC
Confidence            9999988  4432  2222211   1  11477899999999743    4555678999999832  3  3344444445


Q ss_pred             CCcEEEEEcCCCCEEEEeeC-CCcEEEEeC--CCceeeccccccccCccEEEEEE
Q 022184          245 KPASVLSISLDGKYLAMGSK-DGDICVVDV--KKMEINHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~--~~~~~~~~~~~~~~~~~v~~~~~  296 (301)
                      ...+.++++|+|++|+++.. ++.|.+|++  ++|.+........ -....++.|
T Consensus       292 ~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~-~~~p~ci~f  345 (345)
T PF10282_consen  292 KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVP-IPSPVCIVF  345 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEE-SSSEEEEEE
T ss_pred             CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccccc-CCCCEEEeC
Confidence            56899999999999999874 568999876  5676655432222 445667766

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.72  E-value=1.6e-15  Score=114.30  Aligned_cols=253  Identities=14%  Similarity=0.152  Sum_probs=166.3

Q ss_pred             EeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE-ecCCcEE
Q 022184           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNGGCK   88 (301)
Q Consensus        10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~d~~i~   88 (301)
                      ++|+|+   ++++|.....         ++..-|.++-++.      +.+ .--+.|.-+.|..|..+++++ ..++.|+
T Consensus        14 c~fSp~---g~yiAs~~~y---------rlviRd~~tlq~~------qlf-~cldki~yieW~ads~~ilC~~yk~~~vq   74 (447)
T KOG4497|consen   14 CSFSPC---GNYIASLSRY---------RLVIRDSETLQLH------QLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQ   74 (447)
T ss_pred             eeECCC---CCeeeeeeee---------EEEEeccchhhHH------HHH-HHHHHhhheeeeccceeeeeeeeccceEE
Confidence            578888   7788874321         3333343332221      111 114568889999988877654 6688999


Q ss_pred             EEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEE-EEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCc
Q 022184           89 LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE  167 (301)
Q Consensus        89 ~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  167 (301)
                      +|++...+---       ....+..++..++|||||+.| .+...+-.|.+|.+.+.+... ++-....+..++|+|||+
T Consensus        75 vwsl~Qpew~c-------kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~  146 (447)
T KOG4497|consen   75 VWSLVQPEWYC-------KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQ  146 (447)
T ss_pred             EEEeecceeEE-------EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCc
Confidence            99998776522       222356789999999999665 555668999999998876532 323334568899999999


Q ss_pred             EEEEEeC------------------------------------CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          168 FLATTST------------------------------------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       168 ~l~~~~~------------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      +.+.+++                                    +..+.+||.--.-.+..+.  .+-.+..++|+|.++.
T Consensus       147 f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe--~~lG~k~v~wsP~~qf  224 (447)
T KOG4497|consen  147 FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE--RGLGLKFVEWSPCNQF  224 (447)
T ss_pred             eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee--eccceeEEEeccccce
Confidence            8776653                                    1234455432222222222  2234788999999987


Q ss_pred             ceEEEEEEeCCcceEEEEEccCceE-------------------------------------------------------
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWNK-------------------------------------------------------  236 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~~-------------------------------------------------------  236 (301)
                           ++.|+.|+.+++.+--+++.                                                       
T Consensus       225 -----lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~  299 (447)
T KOG4497|consen  225 -----LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ  299 (447)
T ss_pred             -----EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence                 78899999888865322111                                                       


Q ss_pred             -----eeeee------ccCCCcEEEEEcCCCCEEEEeeCC--CcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          237 -----IGHKR------LLRKPASVLSISLDGKYLAMGSKD--GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       237 -----~~~~~------~~~~~v~~~~~s~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                           +..++      .....+.-++|++|..++++-...  +.+-+||++..++-..+.+   ..+|....|.|.
T Consensus       300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ---k~piraf~WdP~  372 (447)
T KOG4497|consen  300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ---KHPIRAFEWDPG  372 (447)
T ss_pred             hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh---ccceeEEEeCCC
Confidence                 00001      112346679999999999988643  6799999999888777655   458999999985

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.70  E-value=1.1e-14  Score=109.81  Aligned_cols=261  Identities=13%  Similarity=0.092  Sum_probs=169.4

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEE-EEecCC
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNG   85 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~d~   85 (301)
                      |.-+.|..|   .-++.++.     ..++.+++|++....        -...++.-...+.+++|||||+.++ +...+-
T Consensus        51 i~yieW~ad---s~~ilC~~-----yk~~~vqvwsl~Qpe--------w~ckIdeg~agls~~~WSPdgrhiL~tseF~l  114 (447)
T KOG4497|consen   51 IVYIEWKAD---SCHILCVA-----YKDPKVQVWSLVQPE--------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDL  114 (447)
T ss_pred             hhheeeecc---ceeeeeee-----eccceEEEEEeecce--------eEEEeccCCCcceeeeECCCcceEeeeeccee
Confidence            445667766   33444433     366788999886433        2344566678899999999997655 666788


Q ss_pred             cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC--------------------------------
Q 022184           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------------------------------  133 (301)
Q Consensus        86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------------------------  133 (301)
                      +|.+|.+.+......      +  .....+..++|+|||++.+..+..                                
T Consensus       115 riTVWSL~t~~~~~~------~--~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW  186 (447)
T KOG4497|consen  115 RITVWSLNTQKGYLL------P--HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW  186 (447)
T ss_pred             EEEEEEeccceeEEe------c--ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence            999999987765111      1  122345788899999887765421                                


Q ss_pred             ----CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE--------------------
Q 022184          134 ----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW--------------------  189 (301)
Q Consensus       134 ----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------------------  189 (301)
                          ..+.+||-.-.-.+... ...-.+..++|+|.+++|+.|+.|+.+|+.+--+-+..                    
T Consensus       187 sPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke  265 (447)
T KOG4497|consen  187 SPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE  265 (447)
T ss_pred             CCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence                22333432111111111 11236888999999999999999999887653221100                    


Q ss_pred             ----------------------------------------EEEeec-----CCCCeeEEEEccCCCcceEEEEEEe--CC
Q 022184          190 ----------------------------------------TFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQR--GD  222 (301)
Q Consensus       190 ----------------------------------------~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~--~~  222 (301)
                                                              ..++..     ....+..++|++|..+     +++.  ..
T Consensus       266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y-----~aTrnd~~  340 (447)
T KOG4497|consen  266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY-----AATRNDKY  340 (447)
T ss_pred             hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE-----EeeecCCC
Confidence                                                    000000     0113567899999986     3443  34


Q ss_pred             cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      -+.+.+||++..+.. ..-....+|....|+|....|+.+....++++|.......+..  ... .-.|..+.|+-+|.
T Consensus       341 PnalW~Wdlq~l~l~-avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v--P~~-GF~i~~l~W~~~g~  415 (447)
T KOG4497|consen  341 PNALWLWDLQNLKLH-AVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV--PKK-GFNIQKLQWLQPGE  415 (447)
T ss_pred             CceEEEEechhhhhh-hhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec--CCC-CceeeeEEecCCCc
Confidence            478999999876543 3334568899999999988888887778899999877555544  223 56789999987763

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=1.9e-14  Score=107.91  Aligned_cols=237  Identities=12%  Similarity=0.171  Sum_probs=156.3

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEE-EEec
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTT   83 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~   83 (301)
                      .+...++|+.|   ..-+++|.       +...+||..+|-......      .+....-.+..|-|  -.++|+ +|+.
T Consensus         6 ~~~lsvs~NQD---~ScFava~-------~~Gfriyn~~P~ke~~~r------~~~~~G~~~veMLf--R~N~laLVGGg   67 (346)
T KOG2111|consen    6 PKTLSVSFNQD---HSCFAVAT-------DTGFRIYNCDPFKESASR------QFIDGGFKIVEMLF--RSNYLALVGGG   67 (346)
T ss_pred             CceeEEEEccC---CceEEEEe-------cCceEEEecCchhhhhhh------ccccCchhhhhHhh--hhceEEEecCC
Confidence            45667999988   56666644       455699999984432211      11111122333333  234554 3333


Q ss_pred             C------CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC-cceecccccCC--
Q 022184           84 N------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAH--  154 (301)
Q Consensus        84 d------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~--  154 (301)
                      +      ..+.|||=.....        ...+.-..+|.++.++++  .|++.- .+.|+||...+ .+.+..+....  
T Consensus        68 ~~pky~pNkviIWDD~k~~~--------i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NP  136 (346)
T KOG2111|consen   68 SRPKYPPNKVIIWDDLKERC--------IIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP  136 (346)
T ss_pred             CCCCCCCceEEEEecccCcE--------EEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCC
Confidence            2      4799999332222        223334578999999776  566665 67899999873 34433333222  


Q ss_pred             ccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCce--EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce-EEEEE
Q 022184          155 KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYD  230 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d  230 (301)
                      ..+.+++-+.+...||.-+ .-|.|+|-|+...+.  ...+.. |...|.+++.+.+|..     +++++..|+ |+|||
T Consensus       137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~s~Iacv~Ln~~Gt~-----vATaStkGTLIRIFd  210 (346)
T KOG2111|consen  137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA-HDSDIACVALNLQGTL-----VATASTKGTLIRIFD  210 (346)
T ss_pred             CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc-ccCceeEEEEcCCccE-----EEEeccCcEEEEEEE
Confidence            2343333333444565544 568999999986655  244444 4557999999999997     788888776 78999


Q ss_pred             ccCceEeeeeecc--CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          231 ISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       231 ~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      ..+++.+.+++..  ...|.+++||||+.+||+++..|+++||.++..
T Consensus       211 t~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  211 TEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             cCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            9999998777543  357999999999999999999999999998763

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.70  E-value=5e-13  Score=108.45  Aligned_cols=255  Identities=16%  Similarity=0.224  Sum_probs=165.6

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec----CCcEEEEEEcCCccccccccccCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMPP  108 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----d~~i~~w~~~~~~~~~~~~~~~~~~  108 (301)
                      ..+.|.++.+|.....+.....     .........++++|++++|.++..    ++.|..|++..............  
T Consensus        11 ~~~gI~~~~~d~~~g~l~~~~~-----~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~--   83 (345)
T PF10282_consen   11 KGGGIYVFRFDEETGTLTLVQT-----VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP--   83 (345)
T ss_dssp             SSTEEEEEEEETTTTEEEEEEE-----EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE--
T ss_pred             CCCcEEEEEEcCCCCCceEeee-----ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec--
Confidence            4477889999887776643111     113455778999999999998876    47899999987522222211110  


Q ss_pred             CCCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCC-cceecc--cc-----------cCCccEEEEEecCCCcEEEEEe
Q 022184          109 LQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPS-LRIILD--EP-----------KAHKSVLDMDFSLDSEFLATTS  173 (301)
Q Consensus       109 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~-~~~~~~--~~-----------~~~~~i~~~~~~~~~~~l~~~~  173 (301)
                       ........++++|++++|+++.. +|.|.++++.. +.....  ..           .......++.++|+++++++..
T Consensus        84 -~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d  162 (345)
T PF10282_consen   84 -SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD  162 (345)
T ss_dssp             -ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred             -cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence             02345578999999999988874 89999999976 332111  11           1224578999999999888765


Q ss_pred             -CCCcEEEEeCCCCc--e--EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc--CceE--eeeeecc-
Q 022184          174 -TDGSARIWKTEDGV--A--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNK--IGHKRLL-  243 (301)
Q Consensus       174 -~d~~i~i~d~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~--~~~~~~~-  243 (301)
                       ....|.+|++....  .  ...+..+.....+.++|+|+++++|    +....++.|.++++.  ++..  +...... 
T Consensus       163 lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y----v~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~  238 (345)
T PF10282_consen  163 LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY----VVNELSNTVSVFDYDPSDGSLTEIQTISTLP  238 (345)
T ss_dssp             TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEE----EEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred             cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEE----EecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence             34579999997654  3  2334445555689999999999743    456678899999988  4322  2222211 


Q ss_pred             -----CCCcEEEEEcCCCCEEEEee-CCCcEEEEeCC--Cce--eeccccccccCccEEEEEEccCCC
Q 022184          244 -----RKPASVLSISLDGKYLAMGS-KDGDICVVDVK--KME--INHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       244 -----~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~--~~~--~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                           ......++++|||++|+++. .++.|.+|++.  +++  .+..+. .. ....+.++++|||+
T Consensus       239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~-G~~Pr~~~~s~~g~  304 (345)
T PF10282_consen  239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TG-GKFPRHFAFSPDGR  304 (345)
T ss_dssp             TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ES-SSSEEEEEE-TTSS
T ss_pred             ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CC-CCCccEEEEeCCCC
Confidence                 12578899999999988876 45689999993  233  233332 12 34589999999986

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.69  E-value=4.6e-16  Score=113.62  Aligned_cols=171  Identities=16%  Similarity=0.229  Sum_probs=129.8

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee--CCceeccccccCCcceEEEECCCCCeEEEE
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (301)
                      .+.++|..|-.+-+..-+++.|-      .++.+.+|+.+..+..+..  ..........|..+|.++.+.+.-..=+++
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGy------Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg  223 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGY------ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG  223 (323)
T ss_pred             cCceeeeeccccccceEEEEEec------cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence            46688888765543333444433      6677899999876443321  223344456799999999999876677788


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      +.+..+..|+++...........  .. -.+..+..+..-||++.+|+++.|+.|+||+.++.+++..+..|...|.+++
T Consensus       224 ga~dkl~~~Sl~~s~gslq~~~e--~~-lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA  300 (323)
T KOG0322|consen  224 GADDKLVMYSLNHSTGSLQIRKE--IT-LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA  300 (323)
T ss_pred             CccccceeeeeccccCcccccce--EE-ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE
Confidence            88888999998755332211110  01 1235688899999999999999999999999999999999989999999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeC
Q 022184          162 FSLDSEFLATTSTDGSARIWKT  183 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~  183 (301)
                      |+|+.+.+|.++.|++|.+|++
T Consensus       301 fspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  301 FSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999986

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=7.5e-15  Score=121.44  Aligned_cols=275  Identities=15%  Similarity=0.150  Sum_probs=189.5

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCC-------ceeccccccCCcceEEEECCC
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-------LVTYVFDESEGDPMTIAVNPS   74 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~   74 (301)
                      +...+..|++|+..   ..++|+||      .+|.+++..++..+......+       ...+.+.||++.|.-+.|+.+
T Consensus        12 PnnvkL~c~~WNke---~gyIAcgG------~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~   82 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKE---SGYIACGG------ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN   82 (1189)
T ss_pred             CCCceEEEEEEccc---CCeEEecc------ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc
Confidence            45678899999977   67999988      777889999887665544333       335678999999999999999


Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  154 (301)
                      .+.|-++..+|.|.+|-+-.+.-......     ....+-|.+++|+.||..|+....||.|.+=.++..+. ....-..
T Consensus        83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiN-----nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg  156 (1189)
T KOG2041|consen   83 NQKLTTSDTSGLIIVWMLYKGSWCEEMIN-----NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKG  156 (1189)
T ss_pred             cccccccCCCceEEEEeeecccHHHHHhh-----CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcch
Confidence            99999999999999999987764322221     12346789999999999999999999998877654332 2111112


Q ss_pred             ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-------ceEEEEee---cCCCCeeEEEEc--------cCCCcceEEE
Q 022184          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-------VAWTFLTR---NSDEKIELCRFS--------KDGTKPFLFC  216 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~---~~~~~v~~~~~~--------~~~~~~~~~~  216 (301)
                      .....+.|++|.+.++.+-.+|.+.+||....       .+.....+   ..+..+..+.|.        |+...     
T Consensus       157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~-----  231 (1189)
T KOG2041|consen  157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR-----  231 (1189)
T ss_pred             heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE-----
Confidence            24557889999999988889999999997532       11111111   112234455553        34444     


Q ss_pred             EEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC---------CcEEEEeCCCceeecccccccc
Q 022184          217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---------GDICVVDVKKMEINHWSKRLHL  287 (301)
Q Consensus       217 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------~~i~i~~~~~~~~~~~~~~~~~  287 (301)
                      ++..-.+|.+.+..-.+......+ .....+..+.|+++|..|++++.+         +.|++|.. -|+.+..+. .. 
T Consensus       232 lavcy~nGr~QiMR~eND~~Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlk-vp-  307 (1189)
T KOG2041|consen  232 LAVCYANGRMQIMRSENDPEPVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLK-VP-  307 (1189)
T ss_pred             EEEEEcCceehhhhhcCCCCCeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEe-cC-
Confidence            455666777777654443322222 223567889999999999999864         35666654 455555553 33 


Q ss_pred             CccEEEEEEccCC
Q 022184          288 GTSIALVEFCPTQ  300 (301)
Q Consensus       288 ~~~v~~~~~spdg  300 (301)
                      ...|++++|-..|
T Consensus       308 g~~It~lsWEg~g  320 (1189)
T KOG2041|consen  308 GSCITGLSWEGTG  320 (1189)
T ss_pred             CceeeeeEEcCCc
Confidence            6789999886543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.9e-15  Score=119.90  Aligned_cols=231  Identities=13%  Similarity=0.127  Sum_probs=165.9

Q ss_pred             ccCCcceEEEECCCCCeEE-EEecCCcEEEEEEcCCccccc---------c--cc-----------ccC----------C
Q 022184           61 ESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDIN---------L--LA-----------KKM----------P  107 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~-~~~~d~~i~~w~~~~~~~~~~---------~--~~-----------~~~----------~  107 (301)
                      +|...-+.|..+|||+|++ +|..-..|++||+..-.....         +  +.           ...          .
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            4677788999999999876 555678999999976543100         0  00           000          0


Q ss_pred             CCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 022184          108 PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV  187 (301)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  187 (301)
                      .+.....-..++++.-..-|+.++....|+-++++.|.-+..+....+.++++..++-..+|++|+.+|.|..||.+...
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence            00001223455555433345555556778889999999887777666899999999999999999999999999999887


Q ss_pred             eEEEEeecCC----------CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee-eccCCCcEEEEEcCC-
Q 022184          188 AWTFLTRNSD----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLD-  255 (301)
Q Consensus       188 ~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~-  255 (301)
                      .+..+.....          ..|+++.|+.+|-.     ++.|..+|.+.+||+++.+++... ....-+|..+.|.+. 
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-----~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~  283 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-----VAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD  283 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCcee-----EEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence            7666543211          24899999999877     788999999999999998876432 223457889999775 


Q ss_pred             -CCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          256 -GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       256 -~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                       ++.+++.. ...++|||-.+|+....+..   ...++.+++-|++
T Consensus       284 ~q~~v~S~D-k~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~s  325 (703)
T KOG2321|consen  284 QQNKVVSMD-KRILKIWDECTGKPMASIEP---TSDLNDFCFVPGS  325 (703)
T ss_pred             CCceEEecc-hHHhhhcccccCCceeeccc---cCCcCceeeecCC
Confidence             34555553 46899999999998887754   4468888888774

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.66  E-value=3.1e-14  Score=119.22  Aligned_cols=196  Identities=16%  Similarity=0.103  Sum_probs=129.7

Q ss_pred             cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---CeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|.++|......        .....+...+...+|+|||++|+.+..+   ..|++||+.+++... +......+..++|
T Consensus       171 ~l~~~d~~g~~~--------~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~  241 (417)
T TIGR02800       171 ELQVADYDGANP--------QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF  241 (417)
T ss_pred             eEEEEcCCCCCC--------EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence            577777654332        1112234567888999999999887644   479999998876532 3334455677899


Q ss_pred             cCCCcEEEE-EeCCC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC--CcceEEEEEccCceEe
Q 022184          163 SLDSEFLAT-TSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNKI  237 (301)
Q Consensus       163 ~~~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~  237 (301)
                      +||++.|+. .+.++  .|.+||+.++.... +..+ ........|+|+|+.++    +...  ....|.++|+.+++..
T Consensus       242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~~~~~s~dg~~l~----~~s~~~g~~~iy~~d~~~~~~~  315 (417)
T TIGR02800       242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNG-PGIDTEPSWSPDGKSIA----FTSDRGGSPQIYMMDADGGEVR  315 (417)
T ss_pred             CCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCC-CCCCCCEEECCCCCEEE----EEECCCCCceEEEEECCCCCEE
Confidence            999997764 44444  58889988775433 3322 23345678999999732    2222  2346888888876543


Q ss_pred             eeeeccCCCcEEEEEcCCCCEEEEeeCCC---cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          238 GHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                       .+.........+.|+|+|++++.++.++   .|.+||+.++.......    .......+|+|||+
T Consensus       316 -~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~----~~~~~~p~~spdg~  377 (417)
T TIGR02800       316 -RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD----TGLDESPSFAPNGR  377 (417)
T ss_pred             -EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC----CCCCCCceECCCCC
Confidence             3443455667889999999999988775   79999998865443321    12234568999985

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.66  E-value=3.2e-14  Score=107.95  Aligned_cols=252  Identities=14%  Similarity=0.179  Sum_probs=162.1

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccccc------------CCcceEEEECC
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES------------EGDPMTIAVNP   73 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~~~~~~   73 (301)
                      -|.++.|...   +.++|+|.+++.+      .++.-+.....   .......++.|            ...|..+.|.+
T Consensus        27 iis~vef~~~---Ge~LatGdkgGRV------v~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~   94 (433)
T KOG1354|consen   27 IISAVEFDHY---GERLATGDKGGRV------VLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD   94 (433)
T ss_pred             ceeeEEeecc---cceEeecCCCCeE------EEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence            4678888877   7899999866543      44433322210   00011112222            34599999998


Q ss_pred             CCC--eEEEEecCCcEEEEEEcCCccccc-----------------cc------------cccCCCCCCCCCeeEEEEee
Q 022184           74 SGD--DFVCSTTNGGCKLFEVYGGATDIN-----------------LL------------AKKMPPLQDAGPQKCLSFSV  122 (301)
Q Consensus        74 ~~~--~l~~~~~d~~i~~w~~~~~~~~~~-----------------~~------------~~~~~~~~~~~~v~~~~~s~  122 (301)
                      +++  .++..+.|.+|++|.+........                 ++            .+..-.-.|.--|++++++.
T Consensus        95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns  174 (433)
T KOG1354|consen   95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS  174 (433)
T ss_pred             CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence            665  666777999999999975443210                 00            00111123455688999999


Q ss_pred             CCCEEEEeecCCeEEEEeCCCcce---ecccccCC-----ccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEE--
Q 022184          123 DGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTF--  191 (301)
Q Consensus       123 ~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~--  191 (301)
                      |...++++. |=.|.+|+++-...   +..+..+.     .-|++..|+| ..+.|+-.+..|+|++-|+|.....-.  
T Consensus       175 D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs  253 (433)
T KOG1354|consen  175 DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS  253 (433)
T ss_pred             ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence            999888876 78899999853222   22222222     2488899999 456788888899999999995432111  


Q ss_pred             --EeecC-----------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc-CceEeeeeeccC------------C
Q 022184          192 --LTRNS-----------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLR------------K  245 (301)
Q Consensus       192 --~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~------------~  245 (301)
                        +..+.           -..|..+.|+++|++     +++.. =-+|++||+. ..+++.....|.            .
T Consensus       254 KlfEepedp~~rsffseiIsSISDvKFs~sGry-----ilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD  327 (433)
T KOG1354|consen  254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-----ILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND  327 (433)
T ss_pred             hhhccccCCcchhhHHHHhhhhhceEEccCCcE-----EEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence              11100           124788999999997     44433 3589999984 444555555443            1


Q ss_pred             C---cEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          246 P---ASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       246 ~---v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      .   -..++|+.++.++++|+..+.+++|++..+
T Consensus       328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             chhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            1   245789999999999999999999996554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=5.1e-14  Score=118.10  Aligned_cols=198  Identities=17%  Similarity=0.131  Sum_probs=126.8

Q ss_pred             cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---CeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|.++|.++...        .....+...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+......|
T Consensus       180 ~l~~~d~~g~~~--------~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~  250 (430)
T PRK00178        180 TLQRSDYDGARA--------VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAW  250 (430)
T ss_pred             EEEEECCCCCCc--------eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEE
Confidence            366666665432        1112345678899999999999876643   469999998876532 3333344557899


Q ss_pred             cCCCcEEEE-EeCCC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184          163 SLDSEFLAT-TSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (301)
Q Consensus       163 ~~~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  239 (301)
                      +|||+.|+. .+.++  .|.+||+.+++... +..+ ........|+|||+.+++  .........|.++|+.+++... 
T Consensus       251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~-~~~~~~~~~spDg~~i~f--~s~~~g~~~iy~~d~~~g~~~~-  325 (430)
T PRK00178        251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNH-PAIDTEPFWGKDGRTLYF--TSDRGGKPQIYKVNVNGGRAER-  325 (430)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccC-CCCcCCeEECCCCCEEEE--EECCCCCceEEEEECCCCCEEE-
Confidence            999998774 44454  58888998876543 3322 234567889999997322  1111223468888887776432 


Q ss_pred             eeccCCCcEEEEEcCCCCEEEEeeCCC---cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          240 KRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +...........|+|||++|+..+.++   .|.++|+.+++.......    .......|+|||+
T Consensus       326 lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~----~~~~~p~~spdg~  386 (430)
T PRK00178        326 VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT----SLDESPSVAPNGT  386 (430)
T ss_pred             eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC----CCCCCceECCCCC
Confidence            222223344678999999998876542   588999988865443321    1223568999986

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=5.9e-12  Score=96.64  Aligned_cols=274  Identities=10%  Similarity=0.149  Sum_probs=173.8

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-   83 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-   83 (301)
                      +..+-++|+++   .+.+.++..   .+.++.+..|.+|++...+..  .....+.+  .+...++++++|++++++.. 
T Consensus        40 ~nptyl~~~~~---~~~LY~v~~---~~~~ggvaay~iD~~~G~Lt~--ln~~~~~g--~~p~yvsvd~~g~~vf~AnY~  109 (346)
T COG2706          40 GNPTYLAVNPD---QRHLYVVNE---PGEEGGVAAYRIDPDDGRLTF--LNRQTLPG--SPPCYVSVDEDGRFVFVANYH  109 (346)
T ss_pred             CCCceEEECCC---CCEEEEEEe---cCCcCcEEEEEEcCCCCeEEE--eeccccCC--CCCeEEEECCCCCEEEEEEcc
Confidence            34566788876   434444332   124778899999998665532  11222332  23488999999999998875 


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCC----------CCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcceeccc--
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDA----------GPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDE--  150 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~--  150 (301)
                      .|.|.++.++........    .....|.          ..+....+.|++++|++..- --.|.+|++..++.....  
T Consensus       110 ~g~v~v~p~~~dG~l~~~----v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~  185 (346)
T COG2706         110 SGSVSVYPLQADGSLQPV----VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA  185 (346)
T ss_pred             CceEEEEEcccCCccccc----eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc
Confidence            488999999764322211    1111222          22788999999999988753 346999999876643221  


Q ss_pred             -ccCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCC-ceEEEEee--------cCCCCeeEEEEccCCCcceEEEEEE
Q 022184          151 -PKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VAWTFLTR--------NSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       151 -~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                       .......+.|.|+|++++..... -+++|.+|..... ..+..++.        ........+..+|||++++    ++
T Consensus       186 ~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY----as  261 (346)
T COG2706         186 EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY----AS  261 (346)
T ss_pred             ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE----Ee
Confidence             12234678999999999776655 6899999998763 22232221        1123567899999999743    33


Q ss_pred             eCCcceEEEEEccC--ceE--eeeeeccCCCcEEEEEcCCCCEEEEeeCC-CcEEEEeCC--CceeeccccccccCccEE
Q 022184          220 RGDKALLAVYDIST--WNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD-GDICVVDVK--KMEINHWSKRLHLGTSIA  292 (301)
Q Consensus       220 ~~~~~~i~~~d~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~i~i~~~~--~~~~~~~~~~~~~~~~v~  292 (301)
                      ......|.+|.+..  ++.  +.....+....+.+.++|.|++|+++..+ ..|.+|..+  +|++-....... .....
T Consensus       262 NRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~-~p~Pv  340 (346)
T COG2706         262 NRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAV-VPEPV  340 (346)
T ss_pred             cCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccC-CCCcE
Confidence            33344788887653  322  22233344557899999999999999876 458888765  565544433233 34455


Q ss_pred             EEEEc
Q 022184          293 LVEFC  297 (301)
Q Consensus       293 ~~~~s  297 (301)
                      ++.|.
T Consensus       341 cv~f~  345 (346)
T COG2706         341 CVKFL  345 (346)
T ss_pred             EEEEc
Confidence            67664

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.64  E-value=3.3e-14  Score=123.82  Aligned_cols=226  Identities=11%  Similarity=0.082  Sum_probs=158.0

Q ss_pred             CCceeccccccCCcceEEEECCCC-CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe
Q 022184           52 SPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG  130 (301)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  130 (301)
                      .......+..|...|..++.++.. .++++|+.||+|++|+...-..................++.++...+.+..+|++
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            344556788899999999988755 8999999999999999976554322111111222245788999999999999999


Q ss_pred             ecCCeEEEEeCCCcce-------ecccccCC-ccE-EEEEecC-CCc-EEEEEeCCCcEEEEeCCCCceEEEEee-cCCC
Q 022184          131 GVDGHLRIMHWPSLRI-------ILDEPKAH-KSV-LDMDFSL-DSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NSDE  198 (301)
Q Consensus       131 ~~dg~i~v~d~~~~~~-------~~~~~~~~-~~i-~~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~  198 (301)
                      +.||.|++.+++..+.       .+....+. +.+ ..-+|.. ... .++.+..-+.|..||++.......++. ...+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            9999999999865211       11111111 233 3333433 233 678888889999999998776555432 1234


Q ss_pred             CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee-ccCCCcEEEEEcCC---CCEEEEee--CCCcEEEEe
Q 022184          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLD---GKYLAMGS--KDGDICVVD  272 (301)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~---~~~l~~~~--~d~~i~i~~  272 (301)
                      .|++++.+|.+.+     ++.|...|.+.+||++=+.++.... .+..++..+..+|-   ....++++  ..+.|.+|+
T Consensus      1197 ~vTSi~idp~~~W-----lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNW-----LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             ceeEEEecCCceE-----EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            6999999999998     7899999999999999777664432 33467777777663   34555554  467899999


Q ss_pred             CCCceeeccc
Q 022184          273 VKKMEINHWS  282 (301)
Q Consensus       273 ~~~~~~~~~~  282 (301)
                      +.+|...+.+
T Consensus      1272 ~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1272 METGLRQTVL 1281 (1431)
T ss_pred             cccCcceEEE
Confidence            9998655544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.1e-13  Score=115.89  Aligned_cols=198  Identities=16%  Similarity=0.112  Sum_probs=123.1

Q ss_pred             cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---CeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|.++|.+.....        ....+...+....|+|||+.|+..+.+   ..|++||+.+++... +....+.....+|
T Consensus       199 ~l~i~d~dG~~~~--------~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~w  269 (448)
T PRK04792        199 QLMIADYDGYNEQ--------MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRF  269 (448)
T ss_pred             EEEEEeCCCCCce--------EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeE
Confidence            4666676554321        112244577889999999998876543   368889998776532 2222233457899


Q ss_pred             cCCCcEEEE-EeCCCc--EEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184          163 SLDSEFLAT-TSTDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (301)
Q Consensus       163 ~~~~~~l~~-~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  239 (301)
                      +|||+.|+. .+.++.  |.++|+.+++... +..+ .......+|+|||+.+++  .........|.++|+.+++... 
T Consensus       270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~-~~~~~~p~wSpDG~~I~f--~s~~~g~~~Iy~~dl~~g~~~~-  344 (448)
T PRK04792        270 SPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRH-RAIDTEPSWHPDGKSLIF--TSERGGKPQIYRVNLASGKVSR-  344 (448)
T ss_pred             CCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccC-CCCccceEECCCCCEEEE--EECCCCCceEEEEECCCCCEEE-
Confidence            999997765 455664  7788888776433 3322 234567899999997422  1111233567778887766432 


Q ss_pred             eeccCCCcEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          240 KRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +..........+|+|||++|+..+.+ +  .|.++|+.+++...... ..   ......|+|||+
T Consensus       345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~-~~---~d~~ps~spdG~  405 (448)
T PRK04792        345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS-TR---LDESPSVAPNGT  405 (448)
T ss_pred             EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC-CC---CCCCceECCCCC
Confidence            22222333457899999998887653 3  46667888876544321 11   123457999985

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2.2e-13  Score=113.25  Aligned_cols=227  Identities=17%  Similarity=0.113  Sum_probs=133.2

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-C
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-N   84 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d   84 (301)
                      +...=+|+||.....++.+....      +.-+||..+..+....       .+....+.....+|+|||+.|+..+. +
T Consensus       186 ~~~sP~wSPDG~~~~~~y~S~~~------g~~~I~~~~l~~g~~~-------~lt~~~g~~~~p~wSPDG~~Laf~s~~~  252 (428)
T PRK01029        186 LSITPTWMHIGSGFPYLYVSYKL------GVPKIFLGSLENPAGK-------KILALQGNQLMPTFSPRKKLLAFISDRY  252 (428)
T ss_pred             CcccceEccCCCceEEEEEEccC------CCceEEEEECCCCCce-------EeecCCCCccceEECCCCCEEEEEECCC
Confidence            44555799884322233343322      2236777766553221       12223444567899999999887653 2


Q ss_pred             C----cEEEEEEcCCc--cccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEE--eCCC-cceecccccCC
Q 022184           85 G----GCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIM--HWPS-LRIILDEPKAH  154 (301)
Q Consensus        85 ~----~i~~w~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~--d~~~-~~~~~~~~~~~  154 (301)
                      |    .+.+|++..+.  ....+..      .........+|+|||+.|+..+ .+|...+|  ++.. +.....+....
T Consensus       253 g~~di~~~~~~~~~g~~g~~~~lt~------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~  326 (428)
T PRK01029        253 GNPDLFIQSFSLETGAIGKPRRLLN------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY  326 (428)
T ss_pred             CCcceeEEEeecccCCCCcceEeec------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC
Confidence            3    23346665431  1111110      0112335679999999887765 45654444  4432 22233343344


Q ss_pred             ccEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184          155 KSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  231 (301)
                      ..+....|+|||+.|+..+.+   ..|.+||+.+++... +... ...+....|+|||+.+++  .........|.++|+
T Consensus       327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~-~~~~~~p~wSpDG~~L~f--~~~~~g~~~L~~vdl  402 (428)
T PRK01029        327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTS-PENKESPSWAIDSLHLVY--SAGNSNESELYLISL  402 (428)
T ss_pred             CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCC-CCCccceEECCCCCEEEE--EECCCCCceEEEEEC
Confidence            566788999999988877643   369999998887643 3322 234678999999997432  223334568999999


Q ss_pred             cCceEeeeeeccCCCcEEEEEcCCC
Q 022184          232 STWNKIGHKRLLRKPASVLSISLDG  256 (301)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~~~~s~~~  256 (301)
                      .+++... +....+.+...+|+|-.
T Consensus       403 ~~g~~~~-Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        403 ITKKTRK-IVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCEEE-eecCCCcccCceecCCC
Confidence            8776543 33344556778898753

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=4.4e-15  Score=119.12  Aligned_cols=161  Identities=15%  Similarity=0.209  Sum_probs=123.7

Q ss_pred             CCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc-ccCCccEEEEEecC--CCcEEEEEeCCCcEEEEeCC
Q 022184          108 PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PKAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTE  184 (301)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~  184 (301)
                      ...|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-|  +.+++++|..|..|+++|+.
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~  125 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD  125 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence            3468899999999999999999999999999998766665554 46668999999999  56689999999999999997


Q ss_pred             CC----------ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe----------eeeeccC
Q 022184          185 DG----------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----------GHKRLLR  244 (301)
Q Consensus       185 ~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----------~~~~~~~  244 (301)
                      ..          +....+..| ...|..++-.|++.+.    +.++++||+|+-||++....-          ..+...-
T Consensus       126 ~~~~~~~d~~~~~~~~~~~ch-t~rVKria~~p~~Pht----fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  126 SSKEGGMDHGMEETTRCWSCH-TDRVKRIATAPNGPHT----FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             cccccccccCccchhhhhhhh-hhhhhheecCCCCCce----EEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            42          122223333 3468889999999763    588899999999999863211          0111111


Q ss_pred             CCcEEEEEcCC-CCEEEEeeCCCcEEEEeC
Q 022184          245 KPASVLSISLD-GKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       245 ~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~  273 (301)
                      -...++..+|. ..+|++|+.|-..++||.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            24567889995 578999999999999994

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=2.4e-13  Score=109.83  Aligned_cols=185  Identities=13%  Similarity=0.145  Sum_probs=143.5

Q ss_pred             EEEEecCCcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc-----
Q 022184           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-----  151 (301)
Q Consensus        78 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----  151 (301)
                      |++++....|+-++++.+..        +..+. ..+.++++..++-..+|++|+.+|.|..||.+....+..+.     
T Consensus       148 ly~~gsg~evYRlNLEqGrf--------L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v  219 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRF--------LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV  219 (703)
T ss_pred             EEEeecCcceEEEEcccccc--------ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccccc
Confidence            44444445588888887765        33333 23789999999988899999999999999998765443322     


Q ss_pred             -cCC-----ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          152 -KAH-----KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       152 -~~~-----~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                       .+.     ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-......+|..+.|.+.+...    .+...+...
T Consensus       220 ~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~----~v~S~Dk~~  295 (703)
T KOG2321|consen  220 NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN----KVVSMDKRI  295 (703)
T ss_pred             CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc----eEEecchHH
Confidence             122     2499999999999999999999999999999999887776666789999998774332    345566778


Q ss_pred             EEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      ++|||-.+++....+.. ...+..+|+-|++-+++++-.+..+..|=+..
T Consensus       296 ~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  296 LKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             hhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            99999999998766654 45589999999999999999888888776654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=2.5e-14  Score=113.13  Aligned_cols=268  Identities=15%  Similarity=0.142  Sum_probs=189.4

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--CCCeEEEE
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCS   81 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~   81 (301)
                      .+.|..+.|+..   +..++.|+      .+-.+.+|+|......+.       -..+|...|....|-|  +.+.++++
T Consensus       142 ~GcVntV~FN~~---Gd~l~SgS------DD~~vv~WdW~~~~~~l~-------f~SGH~~NvfQaKFiP~s~d~ti~~~  205 (559)
T KOG1334|consen  142 KGCVNTVHFNQR---GDVLASGS------DDLQVVVWDWVSGSPKLS-------FESGHCNNVFQAKFIPFSGDRTIVTS  205 (559)
T ss_pred             CCccceeeeccc---CceeeccC------ccceEEeehhhccCcccc-------cccccccchhhhhccCCCCCcCceec
Confidence            466778888866   56777765      556678999976654432       2468999999999988  44589999


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCeEEEEeCCCcceecccc---cCCc--
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEP---KAHK--  155 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~--  155 (301)
                      +.||.+++=.+.........    ....+|.++|..++.-|+ ...|.+++.|+.+.-+|+++..+...+.   .+..  
T Consensus       206 s~dgqvr~s~i~~t~~~e~t----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~  281 (559)
T KOG1334|consen  206 SRDGQVRVSEILETGYVENT----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER  281 (559)
T ss_pred             cccCceeeeeeccccceecc----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence            99999999887654432211    223358899999999995 4568999999999999998765533322   2222  


Q ss_pred             -cEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCce------EEEEee-----cCCCCeeEEEEccCCCcceEEEEEEeCC
Q 022184          156 -SVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVA------WTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (301)
Q Consensus       156 -~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (301)
                       ....++.+|... .+++++.|..+++||.+.-..      +..+..     .....|++++|+.++..     +.++-.
T Consensus       282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-----lLaSYn  356 (559)
T KOG1334|consen  282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-----LLASYN  356 (559)
T ss_pred             eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-----eeeeec
Confidence             577899999655 899999999999999875321      122221     22345899999988877     566667


Q ss_pred             cceEEEEEccC--c----------eEee-eeeccCC--CcEEEE-EcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184          223 KALLAVYDIST--W----------NKIG-HKRLLRK--PASVLS-ISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (301)
Q Consensus       223 ~~~i~~~d~~~--~----------~~~~-~~~~~~~--~v~~~~-~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~  286 (301)
                      |-.|+++....  +          ..+. .+++|..  .|-.+- |-|...|+++|+.=|.|.||+-.++++++.+... 
T Consensus       357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-  435 (559)
T KOG1334|consen  357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-  435 (559)
T ss_pred             ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-
Confidence            77899985332  1          1112 2566653  355555 4788899999999999999999999998877533 


Q ss_pred             cCccEEEEEEcc
Q 022184          287 LGTSIALVEFCP  298 (301)
Q Consensus       287 ~~~~v~~~~~sp  298 (301)
                       ..-|+|+.=+|
T Consensus       436 -r~VVNCLEpHP  446 (559)
T KOG1334|consen  436 -RHVVNCLEPHP  446 (559)
T ss_pred             -cceEeccCCCC
Confidence             34777776554

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.59  E-value=6.3e-14  Score=120.15  Aligned_cols=199  Identities=13%  Similarity=0.149  Sum_probs=151.9

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc
Q 022184           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (301)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  145 (301)
                      |....+..+..+++.+..++.+.+||........+........+   ....-+.++++.-++++|+.-+.|.+|+....+
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l---~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL---YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEE---EeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence            44444455667888888889999999987665322221111000   122233456667789999999999999987444


Q ss_pred             eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      ....+.+|.+.|.++.|+-||.++++.|+|.++++|++.+.+.....-..|..++..+.|.|+  .     +++++.|.+
T Consensus       167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~-----i~t~gedct  239 (967)
T KOG0974|consen  167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R-----IITVGEDCT  239 (967)
T ss_pred             CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e-----eEEeccceE
Confidence            434577899999999999999999999999999999999988776333445678999999999  3     799999999


Q ss_pred             EEEEEccCceEeeeeeccC-CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          226 LAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      .++|+... +.+..+..|. ..+..++..++...+++++.|+.+++|++..
T Consensus       240 crvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  240 CRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99997654 4444566654 5799999999999999999999999999864

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.58  E-value=2.4e-12  Score=102.08  Aligned_cols=144  Identities=17%  Similarity=0.243  Sum_probs=112.8

Q ss_pred             ccCCcceEEEECCCCCeEEEEecCC-cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  139 (301)
                      +|.+.|.-..+..+++-++.|..|| .+-++|.++++..        .....-+.|.++..+|+|++++.+.....+.+.
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k--------r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vi  428 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK--------RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVI  428 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE--------EeeCCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence            5777899999988888899999998 8999999988752        122344789999999999999999999999999


Q ss_pred             eCCCcceecccccCCccEEEEEecCCCcEEEEEeCCC----cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      |+.+++....-....+-|+.++|+|+++++|-+--+|    .|+++|+..++....... .. .-.+-+|.|+++++++
T Consensus       429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta-~DfsPaFD~d~ryLYf  505 (668)
T COG4946         429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TA-YDFSPAFDPDGRYLYF  505 (668)
T ss_pred             EecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cc-cccCcccCCCCcEEEE
Confidence            9999987554445557899999999999999877665    699999988776554432 11 1345677777776554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.56  E-value=2.4e-11  Score=96.62  Aligned_cols=210  Identities=13%  Similarity=0.088  Sum_probs=139.7

Q ss_pred             ECCCCCeEEEEec----------CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-c-CCeEEE
Q 022184           71 VNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-V-DGHLRI  138 (301)
Q Consensus        71 ~~~~~~~l~~~~~----------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-dg~i~v  138 (301)
                      ++||++.|+++..          +..|.+||..+.+...++.....+.+........++++|||++|++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998876654          688999999998875554432221212233445789999999998776 3 689999


Q ss_pred             EeCCCcceecccccCC------------------c-------------cEEEE--------------EecC-CCcEEEEE
Q 022184          139 MHWPSLRIILDEPKAH------------------K-------------SVLDM--------------DFSL-DSEFLATT  172 (301)
Q Consensus       139 ~d~~~~~~~~~~~~~~------------------~-------------~i~~~--------------~~~~-~~~~l~~~  172 (301)
                      .|+.+++.+..+....                  +             .....              .|.+ +|+++...
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            9998776543221100                  0             00111              1233 66666665


Q ss_pred             eCCCcEEEEeCCCC-----ceEEEEeec------CCCCeeEEEEccCCCcceEEEEEEe-----CCcceEEEEEccCceE
Q 022184          173 STDGSARIWKTEDG-----VAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQR-----GDKALLAVYDISTWNK  236 (301)
Q Consensus       173 ~~d~~i~i~d~~~~-----~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~d~~~~~~  236 (301)
                      .. |+|.+.|+...     +....+...      .......++++|+++++|+++.--+     ...+.|.++|..+++.
T Consensus       213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv  291 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR  291 (352)
T ss_pred             cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence            55 99999996443     222222111      1223445999999998654221000     1225899999999998


Q ss_pred             eeeeeccCCCcEEEEEcCCCC-EEEEee-CCCcEEEEeCCCceeeccc
Q 022184          237 IGHKRLLRKPASVLSISLDGK-YLAMGS-KDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~i~~~~~~~~~~~~  282 (301)
                      +..+.. ...+..++++||++ +|++.. .++.|.++|..+++.+..+
T Consensus       292 i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       292 LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            887765 56789999999999 887776 5788999999999988876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.55  E-value=7.7e-11  Score=90.64  Aligned_cols=255  Identities=16%  Similarity=0.234  Sum_probs=166.0

Q ss_pred             cCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec---CCcEEEEEEcCCccccccccccCCCCC
Q 022184           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQ  110 (301)
Q Consensus        34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~~w~~~~~~~~~~~~~~~~~~~~  110 (301)
                      ...|.+|.++.....+..     ..+-.+.+.++-++|+|+++.|.++-.   +|.|-.|.++.......+..+..  . 
T Consensus        15 s~gI~v~~ld~~~g~l~~-----~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~--~-   86 (346)
T COG2706          15 SQGIYVFNLDTKTGELSL-----LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT--L-   86 (346)
T ss_pred             CCceEEEEEeCcccccch-----hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc--c-
Confidence            556789999866654422     234456788999999999999988754   47888998886433233322211  1 


Q ss_pred             CCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCC-cceec--ccccCCc----------cEEEEEecCCCcEEEEEeC-C
Q 022184          111 DAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPS-LRIIL--DEPKAHK----------SVLDMDFSLDSEFLATTST-D  175 (301)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~-~~~~~--~~~~~~~----------~i~~~~~~~~~~~l~~~~~-d  175 (301)
                      ...+...+++++++++++++.. .|.|.++-++. |....  ....|.+          .+....+.|++++|++..- -
T Consensus        87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~  166 (346)
T COG2706          87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT  166 (346)
T ss_pred             CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence            1233388999999999998875 58999998865 32211  1122222          2788899999999998873 3


Q ss_pred             CcEEEEeCCCCceEEE--EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-eEeeeeec---------c
Q 022184          176 GSARIWKTEDGVAWTF--LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRL---------L  243 (301)
Q Consensus       176 ~~i~i~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~---------~  243 (301)
                      ..|.+|++..++....  .....+...+-+.|+|+++..|    +..--+++|.+|..... ..+..++.         .
T Consensus       167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY----~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g  242 (346)
T COG2706         167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY----LVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG  242 (346)
T ss_pred             ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE----EEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence            4799999997765322  1123344578999999999754    34456788999988763 12222211         1


Q ss_pred             CCCcEEEEEcCCCCEEEEeeC-CCcEEEEeCCC--ceeecccc-ccccCccEEEEEEccCCC
Q 022184          244 RKPASVLSISLDGKYLAMGSK-DGDICVVDVKK--MEINHWSK-RLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~~--~~~~~~~~-~~~~~~~v~~~~~spdg~  301 (301)
                      ......+..+|||++|+++.. ...|.+|.+..  +++..... ..+ ....+.+.|+|+|+
T Consensus       243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~g~  303 (346)
T COG2706         243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPSGR  303 (346)
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCCCC
Confidence            245678899999999999853 24788888763  33222111 122 33467777777764

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.55  E-value=1.2e-12  Score=106.02  Aligned_cols=192  Identities=17%  Similarity=0.146  Sum_probs=148.4

Q ss_pred             CCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEe--------------------eCCCEEEEee
Q 022184           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS--------------------VDGSRFAAGG  131 (301)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------------------~~~~~l~~~~  131 (301)
                      .|...++|....||.+++|+...++....+..    ...-.+...+..|.                    .|-..++-|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p----~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP----IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeecc----chhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            34567999999999999999998876433321    11122334444442                    1223677788


Q ss_pred             cCCeEEEEeCCCcceecccc--cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCC
Q 022184          132 VDGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (301)
Q Consensus       132 ~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (301)
                      ..|.|.+|+...++...++.  .|.+.|.++.++.+-..|.+++.|..+..|+...+..++.+..... .+.+++.+|||
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~  156 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDG  156 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCC
Confidence            89999999999988776665  4667999999999999999999999999999999998888876654 58999999998


Q ss_pred             CcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCC-----CCEEEEe-eCCCcEEEEeCCC
Q 022184          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GKYLAMG-SKDGDICVVDVKK  275 (301)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~-~~d~~i~i~~~~~  275 (301)
                      ..     +++++  ++|++||+++.+.+..+.+|.++|++++|-.+     |.++.++ ..+.-+.+|-+..
T Consensus       157 ~~-----l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  157 KI-----LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CE-----EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            86     44444  47999999999999999999999999999776     6666554 4455677777654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=7.9e-12  Score=103.34  Aligned_cols=199  Identities=10%  Similarity=-0.000  Sum_probs=125.4

Q ss_pred             cceEEEECCCCCe-EEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-c--CCeEE
Q 022184           65 DPMTIAVNPSGDD-FVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-V--DGHLR  137 (301)
Q Consensus        65 ~v~~~~~~~~~~~-l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~--dg~i~  137 (301)
                      ......|+|||+. ++..+.+   ..|+++|+.+++....        ....+......|+|||+.++... .  +..|.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l--------t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  260 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI--------ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIY  260 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE--------ecCCCcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence            6788999999985 6644433   5688888877654111        11234456678999998776543 2  35788


Q ss_pred             EEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      ++|+.+++. ..+..+........|+|||+.|+..+. .+  .|.+.|+.+++........ .   ....|+|+|+.+.+
T Consensus       261 ~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPDG~~Ia~  335 (419)
T PRK04043        261 LYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTYKNYIVY  335 (419)
T ss_pred             EEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCCCCEEEE
Confidence            888877764 334333333345689999998777663 23  5888888877764433221 1   12489999998432


Q ss_pred             EEEEEeC------CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC---cEEEEeCCCceeec
Q 022184          215 FCTVQRG------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINH  280 (301)
Q Consensus       215 ~~~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~~~~~~~~~~  280 (301)
                      .  ....      ....|.+.|+.+++.. .+... .......|+|||+.|+..+.++   .+.+.++.......
T Consensus       336 ~--~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~  406 (419)
T PRK04043        336 S--SRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFL  406 (419)
T ss_pred             E--EcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEE
Confidence            1  1111      1147899999887653 23322 2334589999999888776442   47777886654443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.54  E-value=1.1e-11  Score=98.42  Aligned_cols=245  Identities=19%  Similarity=0.159  Sum_probs=168.4

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCc--ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD--PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  110 (301)
                      .++.-++|+.+..++.+          +.|+.-  -.+-..+.||+.++.. ..|.|.+||.++.....--.........
T Consensus       244 ~eG~GnlYSvdldGkDl----------rrHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~  312 (668)
T COG4946         244 HEGVGNLYSVDLDGKDL----------RRHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKK  312 (668)
T ss_pred             ccCccceEEeccCCchh----------hhcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCcccccc
Confidence            44555777777766554          233321  2233346789888764 6678999999876652221110010000


Q ss_pred             ----CCCCeeEEE-Eee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCC-cEEEEeC
Q 022184          111 ----DAGPQKCLS-FSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-SARIWKT  183 (301)
Q Consensus       111 ----~~~~v~~~~-~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~  183 (301)
                          ...+..-+. |++ +|.+++..+ .|...+.+...+-.++ + ++.+.|.-..+.-+++-++.|..|| .+-|+|.
T Consensus       313 k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~  389 (668)
T COG4946         313 KQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK  389 (668)
T ss_pred             ccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEec
Confidence                011222222 555 788998888 5778887765554432 2 4555688788888888899999999 8999999


Q ss_pred             CCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee
Q 022184          184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS  263 (301)
Q Consensus       184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  263 (301)
                      ++++...... .- +.|.++..+|+|++     ++.+.....|.+.|+.+++....-+...+-|+.+.|||+++++|.+-
T Consensus       390 ~~~e~kr~e~-~l-g~I~av~vs~dGK~-----~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf  462 (668)
T COG4946         390 DGGEVKRIEK-DL-GNIEAVKVSPDGKK-----VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF  462 (668)
T ss_pred             CCceEEEeeC-Cc-cceEEEEEcCCCcE-----EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec
Confidence            8887544333 33 35999999999998     68888889999999999987655555667899999999999999986


Q ss_pred             CCC----cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          264 KDG----DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       264 ~d~----~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      -+|    .|+++|+..++......  . .+.-.+.+|.|||+
T Consensus       463 P~gy~tq~Iklydm~~~Kiy~vTT--~-ta~DfsPaFD~d~r  501 (668)
T COG4946         463 PEGYYTQSIKLYDMDGGKIYDVTT--P-TAYDFSPAFDPDGR  501 (668)
T ss_pred             CcceeeeeEEEEecCCCeEEEecC--C-cccccCcccCCCCc
Confidence            665    69999999988776542  1 33455678888875

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.54  E-value=1.6e-12  Score=105.41  Aligned_cols=169  Identities=18%  Similarity=0.123  Sum_probs=138.5

Q ss_pred             eCCCEEEEeecCCeEEEEeCCCcceecccccCC---ccEEEEEec------C--------------CCcEEEEEeCCCcE
Q 022184          122 VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH---KSVLDMDFS------L--------------DSEFLATTSTDGSA  178 (301)
Q Consensus       122 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---~~i~~~~~~------~--------------~~~~l~~~~~d~~i  178 (301)
                      |...++|....||.+++|+...++....+....   +..++..|.      |              |-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            345688999999999999998877654443211   233333332      2              23367778889999


Q ss_pred             EEEeCCCCceEEEEe-ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCC
Q 022184          179 RIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK  257 (301)
Q Consensus       179 ~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  257 (301)
                      .+|+...++....+. ..+.+.|.++.++.+-..     +.+++.|+.+..|+......+......+..+.+++.+|||+
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c-----iyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC-----IYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCc-----eEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            999999999888886 566778999998888776     79999999999999999998888888888999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          258 YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       258 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      .+++++  +.|++||+++++.+..+ .+| .++|++++|.-+
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~f-tgh-~s~v~t~~f~~~  195 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITF-TGH-GSPVRTLSFTTL  195 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEe-cCC-CcceEEEEEEEe
Confidence            999997  47999999999999988 789 999999999764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=1.7e-12  Score=100.20  Aligned_cols=212  Identities=10%  Similarity=0.043  Sum_probs=149.1

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeE-EEEecC--CcEEEEEEcCCccccccccccCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTN--GGCKLFEVYGGATDINLLAKKMPPL  109 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d--~~i~~w~~~~~~~~~~~~~~~~~~~  109 (301)
                      .+|.+++|........  ..+..  .+.. ...+..+.-++..+++ ++|+..  ..+.+||++..+....-.......+
T Consensus       123 ~sG~l~~~~~k~~d~h--ss~l~--~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L  197 (412)
T KOG3881|consen  123 SSGNLQVRHDKSGDLH--SSKLI--KLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL  197 (412)
T ss_pred             cCCcEEEEeccCCccc--cccce--eeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence            4566677776533311  11111  1221 2456667777755555 558877  7899999988754322221111111


Q ss_pred             C--CCCCeeEEEEeeC--CCEEEEeecCCeEEEEeCCCcc-eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 022184          110 Q--DAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE  184 (301)
Q Consensus       110 ~--~~~~v~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  184 (301)
                      .  ..-.++++.|-+.  ...|++++.-+.+++||.+.+. ++..+.-...+++++...|++++++++..-+.+..||++
T Consensus       198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r  277 (412)
T KOG3881|consen  198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR  277 (412)
T ss_pred             cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence            1  2234678889886  7889999999999999998654 455555556799999999999999999999999999999


Q ss_pred             CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCC
Q 022184          185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD  255 (301)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~  255 (301)
                      .++..........+.++++..+|.++.     +++++-|..|+|+|+++.+.+.... .+..++++-+.++
T Consensus       278 ~~kl~g~~~kg~tGsirsih~hp~~~~-----las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  278 GGKLLGCGLKGITGSIRSIHCHPTHPV-----LASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             CceeeccccCCccCCcceEEEcCCCce-----EEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence            999887744455567999999999997     7999999999999999866553322 2455677777554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=9.1e-12  Score=100.50  Aligned_cols=202  Identities=12%  Similarity=0.139  Sum_probs=134.3

Q ss_pred             cCCcceEEEECCCCC--eEEE-----EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEE-EEeec-
Q 022184           62 SEGDPMTIAVNPSGD--DFVC-----STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGV-  132 (301)
Q Consensus        62 h~~~v~~~~~~~~~~--~l~~-----~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~-  132 (301)
                      |...|..+.++|.+.  .+|+     .+.-..++||............  ....+  ...-..+.|++-|+-| +.++. 
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a--~ksFF--kadkvqm~WN~~gt~LLvLastd  239 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVA--NKSFF--KADKVQMKWNKLGTALLVLASTD  239 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhh--hcccc--ccceeEEEeccCCceEEEEEEEe
Confidence            577899999999744  4442     2344689999987332211111  01111  1223467888866543 33321 


Q ss_pred             -C---------CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEE--eCCCcEEEEeCCCCceEEEEeecCCCCe
Q 022184          133 -D---------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT--STDGSARIWKTEDGVAWTFLTRNSDEKI  200 (301)
Q Consensus       133 -d---------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~v  200 (301)
                       |         .+++++++........+ ...++|.++.|+|+++.++++  -.-..+.|||++ +.++..+.   .++-
T Consensus       240 VDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egpR  314 (566)
T KOG2315|consen  240 VDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGPR  314 (566)
T ss_pred             ecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCCc
Confidence             2         46888887733333333 346899999999999877664  366789999986 55555553   3356


Q ss_pred             eEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeC------CCcEEEEeCC
Q 022184          201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK------DGDICVVDVK  274 (301)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~i~~~~  274 (301)
                      +++-|+|.|+++.+  .-.+.-.|.+-+||..+.+++..+....  -+-+.|+|||+++++++.      |+.++||+..
T Consensus       315 N~~~fnp~g~ii~l--AGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  315 NTAFFNPHGNIILL--AGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             cceEECCCCCEEEE--eecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            78999999997432  3345567999999999988887766544  355799999999999975      6789999985


Q ss_pred             Cc
Q 022184          275 KM  276 (301)
Q Consensus       275 ~~  276 (301)
                      ..
T Consensus       391 G~  392 (566)
T KOG2315|consen  391 GS  392 (566)
T ss_pred             Cc
Confidence            43

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.51  E-value=5.6e-12  Score=93.94  Aligned_cols=244  Identities=12%  Similarity=0.121  Sum_probs=154.2

Q ss_pred             ccEEEecCCccccC------CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC---CCC-eEEEEecCCcEE
Q 022184           19 VNLVVLGKSSRASS------SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGD-DFVCSTTNGGCK   88 (301)
Q Consensus        19 ~~~~~~g~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-~l~~~~~d~~i~   88 (301)
                      .+++|+|+-.-.-+      ..+.+.+|.+....  +  .+... ....-+..+..+.|..   +|. .++-+..+|.|.
T Consensus        24 ~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~--~--~~l~~-~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~   98 (339)
T KOG0280|consen   24 RNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMK--L--SPLDT-LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQ   98 (339)
T ss_pred             cceEEEeeEEecCCCCchheeccceEEEeecccc--c--Cccce-eeeecccccceeeeeeccCCccceeeeccccceEE
Confidence            45888877522111      23445555554322  2  12111 1122355678888864   555 556677789999


Q ss_pred             EEEEcCCccccccccccCCCCCCC-CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce--ecccccCCccEEEEEecC-
Q 022184           89 LFEVYGGATDINLLAKKMPPLQDA-GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSL-  164 (301)
Q Consensus        89 ~w~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~-  164 (301)
                      ++.....+....+..  +....-. ....++.|++.+..++++..+|.+.+-+......  .+..+.|.-+++...|+. 
T Consensus        99 ~~r~~~~~ss~~L~~--ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~  176 (339)
T KOG0280|consen   99 LYRNDEDESSVHLRG--LSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK  176 (339)
T ss_pred             EEeeccceeeeeecc--cchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC
Confidence            999876554322211  1111111 1356788999999999999999998665544332  346777888899899876 


Q ss_pred             CCcEEEEEeCCCcEEEEeCC-CCceEEE-EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC-ceEeeeee
Q 022184          165 DSEFLATTSTDGSARIWKTE-DGVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKR  241 (301)
Q Consensus       165 ~~~~l~~~~~d~~i~i~d~~-~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~  241 (301)
                      +.+.+.+|++|+.+..||+| .++.+.. .+.|+. .|.++.-+|.....    +++|+.|-.|++||.++ ++++.. .
T Consensus       177 ~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~----I~TGsYDe~i~~~DtRnm~kPl~~-~  250 (339)
T KOG0280|consen  177 EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPKPTY----IATGSYDECIRVLDTRNMGKPLFK-A  250 (339)
T ss_pred             CCceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCCCce----EEEeccccceeeeehhcccCcccc-C
Confidence            45689999999999999999 3444433 233444 48888777764431    79999999999999995 444432 2


Q ss_pred             ccCCCcEEEEEcCC--CCEEEEeeCCCcEEEEeCCCc
Q 022184          242 LLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       242 ~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      ...+.|+.+.++|.  .+.|+++ .-+-.+|-+.+..
T Consensus       251 ~v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~  286 (339)
T KOG0280|consen  251 KVGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDK  286 (339)
T ss_pred             ccccceEEEEecchhhhHHHHHH-HhcCceEEEeccc
Confidence            33578999999994  3344444 3344667776654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.50  E-value=6.1e-12  Score=93.76  Aligned_cols=254  Identities=14%  Similarity=0.062  Sum_probs=157.3

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ..++.|.|..-+..+.+ +++    .....+.++++..+.........+.....+.  .....++.|++.+..++++..+
T Consensus        70 s~~~dm~w~~~~~~g~~-~l~----~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~--~~~~lslD~~~~~~~i~vs~s~  142 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDF-NLL----DAHARGQIQLYRNDEDESSVHLRGLSSKKIS--VVEALSLDISTSGTKIFVSDSR  142 (339)
T ss_pred             cccceeeeeeccCCccc-eee----eccccceEEEEeeccceeeeeecccchhhhh--heeeeEEEeeccCceEEEEcCC
Confidence            34667778766554542 111    1235677788887765544433333222221  1145688899999999999889


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCC-Ccceecc-cccCCccEEEEE
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP-SLRIILD-EPKAHKSVLDMD  161 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~-~~~~~~~-~~~~~~~i~~~~  161 (301)
                      |.+.+-+........     ......|.-+.....|+. +.+++.+|++|+.+..||++ .++.+.. ...|+..|.+|.
T Consensus       143 G~~~~v~~t~~~le~-----vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~  217 (339)
T KOG0280|consen  143 GSISGVYETEMVLEK-----VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY  217 (339)
T ss_pred             CcEEEEecceeeeee-----cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence            988855543332211     012223666778888877 56789999999999999998 3333333 455777899998


Q ss_pred             ecC-CCcEEEEEeCCCcEEEEeCCC-CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce----
Q 022184          162 FSL-DSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----  235 (301)
Q Consensus       162 ~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----  235 (301)
                      -+| .+.+++||+.|..|++||.|+ ++++..-.  ..+.|..+.++|.-....    ..+..-+-.++-+.....    
T Consensus       218 ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~l----L~~CMh~G~ki~~~~~~~~e~~  291 (339)
T KOG0280|consen  218 SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRL----LAACMHNGAKILDSSDKVLEFQ  291 (339)
T ss_pred             cCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHH----HHHHHhcCceEEEecccccchh
Confidence            877 677999999999999999994 55554443  235699999999765422    222222234555544322    


Q ss_pred             -EeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEE-EEeCCCc
Q 022184          236 -KIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDIC-VVDVKKM  276 (301)
Q Consensus       236 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~-i~~~~~~  276 (301)
                       .....+.|..-...-.|......|++++ .|+.++ +|-.-++
T Consensus       292 ~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  292 IVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             eeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence             2233445555555556644445688765 456544 6654443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.49  E-value=1.7e-12  Score=98.80  Aligned_cols=219  Identities=11%  Similarity=0.210  Sum_probs=144.7

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceee----------------eC-----------Cc
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY----------------TS-----------PL   54 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~----------------~~-----------~~   54 (301)
                      |...+|..+.|.++.+...+++.       ..+.++++|..........                ..           ..
T Consensus        82 eieEKinkIrw~~~~n~a~FLls-------tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~  154 (433)
T KOG1354|consen   82 EIEEKINKIRWLDDGNLAEFLLS-------TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEAS  154 (433)
T ss_pred             hhhhhhhhceecCCCCccEEEEe-------cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeee
Confidence            44567888999987654444443       3677789998765433220                00           01


Q ss_pred             eeccc-cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEee-CCCEEEEee
Q 022184           55 VTYVF-DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSV-DGSRFAAGG  131 (301)
Q Consensus        55 ~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~  131 (301)
                      +...+ .+|+--|+++.++.|++.++++ .|=.|.+|+++-......+..-....+. -..-|++..|+| ..+.++..+
T Consensus       155 prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  155 PRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence            12222 5688889999999999999987 5677999999765443322211111110 123578889999 566788888


Q ss_pred             cCCeEEEEeCCCccee------cccc----------cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCceEEEEee
Q 022184          132 VDGHLRIMHWPSLRII------LDEP----------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTR  194 (301)
Q Consensus       132 ~dg~i~v~d~~~~~~~------~~~~----------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~  194 (301)
                      ..|+|++-|++.....      ...+          .--..|.++.|+++|+++++-+. -+|++||+. ..+++..++.
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v  312 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV  312 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence            8999999999843221      1111          11136889999999999998643 689999994 4566666654


Q ss_pred             cCC-----------C---CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184          195 NSD-----------E---KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (301)
Q Consensus       195 ~~~-----------~---~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  234 (301)
                      |..           .   .-..++|+.++.+     +.+|+....+++|+...+
T Consensus       313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~-----v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  313 HEYLRSKLCSLYENDAIFDKFECSWSGNDSY-----VMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             hHhHHHHHHHHhhccchhheeEEEEcCCcce-----EecccccceEEEecCCCC
Confidence            421           1   1235789998887     799999999999996543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=2.9e-11  Score=100.01  Aligned_cols=176  Identities=11%  Similarity=0.034  Sum_probs=114.6

Q ss_pred             CeeEEEEeeCCCE-EEEeec---CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEE-eCC--CcEEEEeCCCC
Q 022184          114 PQKCLSFSVDGSR-FAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STD--GSARIWKTEDG  186 (301)
Q Consensus       114 ~v~~~~~s~~~~~-l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d--~~i~i~d~~~~  186 (301)
                      ......|+|||+. ++..+.   +..|+++|+.+++... +....+......|+|||+.++.. +.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            5678999999985 665443   3569999998887643 33344556678899999876644 333  46888898777


Q ss_pred             ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC-
Q 022184          187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-  265 (301)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-  265 (301)
                      +. ..+..... ......|+|||+.+++  .........|.++|+.+++..+.... ..  ....|||||++|+..... 
T Consensus       268 ~~-~~LT~~~~-~d~~p~~SPDG~~I~F--~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~  340 (419)
T PRK04043        268 TL-TQITNYPG-IDVNGNFVEDDKRIVF--VSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRET  340 (419)
T ss_pred             cE-EEcccCCC-ccCccEECCCCCEEEE--EECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCC
Confidence            64 33433222 2345689999998432  12222334788889987765432221 11  234899999998877653 


Q ss_pred             --------CcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          266 --------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       266 --------~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                              ..|.+.|+.+++.......    .......|+|||+
T Consensus       341 ~~~~~~~~~~I~v~d~~~g~~~~LT~~----~~~~~p~~SPDG~  380 (419)
T PRK04043        341 NNEFGKNTFNLYLISTNSDYIRRLTAN----GVNQFPRFSSDGG  380 (419)
T ss_pred             CcccCCCCcEEEEEECCCCCeEECCCC----CCcCCeEECCCCC
Confidence                    3688889988876554422    2233689999996

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.48  E-value=1.7e-11  Score=99.63  Aligned_cols=170  Identities=16%  Similarity=0.159  Sum_probs=116.3

Q ss_pred             CEEE-EeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEE
Q 022184          125 SRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (301)
Q Consensus       125 ~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~  203 (301)
                      ++++ +-..++.|.+.|..+.+.+.++......-..+.++|||+++++++.|+.|.++|+.+++.+.++....  ....+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~--~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG--NPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS--EEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC--CcceE
Confidence            3443 44568999999999998888876655444567899999999999999999999999999999987543  47899


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc-------CCCcEEEEEcCCCCEEEEeeC-CCcEEEEeCCC
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMGSK-DGDICVVDVKK  275 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~~  275 (301)
                      ++++||+++    +++...++.+.++|.++.+++..+...       ...+..+..+|....+++.-. .+.|.+.|...
T Consensus        84 ~~s~DG~~~----~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   84 AVSPDGKYV----YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EE--TTTEE----EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             EEcCCCCEE----EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            999999973    345556889999999999888766543       235677888888885555544 48888889876


Q ss_pred             ceeeccccccccCccEEEEEEccCCC
Q 022184          276 MEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       276 ~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+.+....... ........|+|+||
T Consensus       160 ~~~~~~~~i~~-g~~~~D~~~dpdgr  184 (369)
T PF02239_consen  160 PKNLKVTTIKV-GRFPHDGGFDPDGR  184 (369)
T ss_dssp             SSCEEEEEEE---TTEEEEEE-TTSS
T ss_pred             ccccceeeecc-cccccccccCcccc
Confidence            54332211112 45677899999986

...

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=7.6e-13  Score=104.89  Aligned_cols=209  Identities=14%  Similarity=0.109  Sum_probs=157.6

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecC
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD  133 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d  133 (301)
                      ...|..|.+.|..+.|+..|..|++++.|..|.+||.........+..      .|...|....|-|  +.+.+++++.|
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S------GH~~NvfQaKFiP~s~d~ti~~~s~d  208 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES------GHCNNVFQAKFIPFSGDRTIVTSSRD  208 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc------ccccchhhhhccCCCCCcCceecccc
Confidence            456789999999999999999999999999999999988766433322      3666777777888  45679999999


Q ss_pred             CeEEEEeCCC-cce--ecccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEee--cCCC---CeeEEE
Q 022184          134 GHLRIMHWPS-LRI--ILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR--NSDE---KIELCR  204 (301)
Q Consensus       134 g~i~v~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~---~v~~~~  204 (301)
                      |.+++=.+.. +..  ...+..|.++|..++.-|+.. .|.+++.|+.+.-+|++.+.+...+..  ....   ....++
T Consensus       209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            9999877643 222  344567888999999999654 699999999999999998766544432  1121   356788


Q ss_pred             EccCCCcceEEEEEEeCCcceEEEEEccCceEe------eeee------ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI------GHKR------LLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      ..|...+.    +++++.|..+++||.+.-...      ..+.      ...-.|++++|+.++.-|.++-.|-.|++|+
T Consensus       289 ~~P~nt~~----faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  289 VDPRNTNE----FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             cCCCCccc----cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence            88887753    588999999999998753321      1111      1234699999998887777777888899996


Q ss_pred             CC
Q 022184          273 VK  274 (301)
Q Consensus       273 ~~  274 (301)
                      -.
T Consensus       365 ~~  366 (559)
T KOG1334|consen  365 KS  366 (559)
T ss_pred             cc
Confidence            44

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.47  E-value=3e-13  Score=122.04  Aligned_cols=203  Identities=16%  Similarity=0.236  Sum_probs=156.3

Q ss_pred             cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (301)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  139 (301)
                      ..|-..|.++.=+|...+.++|+.||.+++|....++.....-      ......|+.+.|+.+|+.+.++..||.+.+|
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~r------t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFR------TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEee------ccCcchhhhhhhcccCCceeeeccCCceeec
Confidence            4445668888889999999999999999999987665422211      1234788999999999999999999999999


Q ss_pred             eCCCcceecccccCCccEEEEEecCCCcEEEEEe---CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEE
Q 022184          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (301)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (301)
                      ... .++....+.|.....++.|-.  ..+++++   .++.+.+||..-......+...|.+.++++++.|....     
T Consensus      2279 q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ql----- 2350 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQL----- 2350 (2439)
T ss_pred             ccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceE-----
Confidence            976 455566667777888888874  5667654   56789999975432222222345556999999999987     


Q ss_pred             EEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184          217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (301)
Q Consensus       217 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~  286 (301)
                      +++|+.+|.|++||++..+.+..++.         ++ ...++++|+..|.++||++....+++.+...|
T Consensus      2351 lisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             EEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence            79999999999999998776655543         44 56799999999999999999887777665443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=4.4e-12  Score=109.09  Aligned_cols=150  Identities=15%  Similarity=0.162  Sum_probs=126.6

Q ss_pred             EEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec
Q 022184           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (301)
Q Consensus        69 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~  148 (301)
                      +.++++.-++++|+.-+.|.+|+......+       .....|.+.|..+.|+-||+++++.++|.++++|++++.+...
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p-------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~  211 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKP-------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG  211 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCc-------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC
Confidence            344666668999999999999999844332       2345688999999999999999999999999999999988765


Q ss_pred             -ccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184          149 -DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (301)
Q Consensus       149 -~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (301)
                       ...+|...++.++|.|+  .+++++.|-+.++|+. .++.+..+..|....+..++..++...     .++++.|+.++
T Consensus       212 ~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~-----~vT~g~Ds~lk  283 (967)
T KOG0974|consen  212 CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVII-----KVTGGNDSTLK  283 (967)
T ss_pred             cccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceE-----EEeeccCcchh
Confidence             56788899999999998  8999999999999976 455566777787778999999988876     79999999999


Q ss_pred             EEEccC
Q 022184          228 VYDIST  233 (301)
Q Consensus       228 ~~d~~~  233 (301)
                      +||+..
T Consensus       284 ~~~l~~  289 (967)
T KOG0974|consen  284 LWDLNG  289 (967)
T ss_pred             hhhhhc
Confidence            999764

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.44  E-value=2.9e-11  Score=92.16  Aligned_cols=200  Identities=9%  Similarity=0.159  Sum_probs=129.2

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      .|++++++.++   ...+.+|-..+      .+.-+.....-.+    .........|...|..+.|+...+.+++.+.|
T Consensus        69 ~~~~~~~y~~e---~~~L~vg~~ng------tvtefs~sedfnk----m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d  135 (404)
T KOG1409|consen   69 SPCSAMEYVSE---SRRLYVGQDNG------TVTEFALSEDFNK----MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD  135 (404)
T ss_pred             CCceEeeeecc---ceEEEEEEecc------eEEEEEhhhhhhh----cchhhhhhhhhcceeeEEecCCceeEEEeccc
Confidence            46777888765   44555554333      2223322221111    11233456799999999999999999999999


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC--CcceecccccCCccEEEEEe
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~i~~~~~  162 (301)
                      ..+.---.+.+.......        -.....++.+.-.  +...|...|.|.+..+.  .-..+..+.+|.+++.+++|
T Consensus       136 k~~~~hc~e~~~~lg~Y~--------~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~W  205 (404)
T KOG1409|consen  136 KQFAWHCTESGNRLGGYN--------FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKW  205 (404)
T ss_pred             cceEEEeeccCCcccceE--------eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEE
Confidence            866544444443311110        0111122222222  45556666766665543  44566778889999999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  232 (301)
                      .|....|.++..|..+.+||+-..+-+......+...|..+...+.-+.     +.+.+.||.|.+||++
T Consensus       206 d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~-----l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  206 DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ-----LISCGEDGGIVVWNMN  270 (404)
T ss_pred             cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee-----eeeccCCCeEEEEecc
Confidence            9999999999999999999997665544333333446887777776666     7889999999999986

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.43  E-value=3.3e-10  Score=90.27  Aligned_cols=199  Identities=12%  Similarity=-0.011  Sum_probs=131.5

Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec----------CCeEEEEeCCCcceecccccCC
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----------DGHLRIMHWPSLRIILDEPKAH  154 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~  154 (301)
                      ++|.+.|.++.+....+...        .....+ +|||++.|+++..          +..|.+||..+.+.+.++.-..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G--------~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~   97 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGG--------FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE   97 (352)
T ss_pred             ceEEEEECCCCEEEEEEEcc--------CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence            78999999887753333221        122334 9999999887765          7899999999999887665322


Q ss_pred             c-------cEEEEEecCCCcEEEEEe-C-CCcEEEEeCCCCceEEEEeecCCCC--------------------------
Q 022184          155 K-------SVLDMDFSLDSEFLATTS-T-DGSARIWKTEDGVAWTFLTRNSDEK--------------------------  199 (301)
Q Consensus       155 ~-------~i~~~~~~~~~~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~--------------------------  199 (301)
                      +       ....++++|||++|+... . +..|.+.|+.+++.+..+..+....                          
T Consensus        98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~  177 (352)
T TIGR02658        98 GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTK  177 (352)
T ss_pred             CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCC
Confidence            2       334789999999888766 3 6889999999887766543221100                          


Q ss_pred             ----eeEE--------------EEcc-CCCcceEEEEEEeCCcceEEEEEccCce-----Eeeeeec-------cCCCcE
Q 022184          200 ----IELC--------------RFSK-DGTKPFLFCTVQRGDKALLAVYDISTWN-----KIGHKRL-------LRKPAS  248 (301)
Q Consensus       200 ----v~~~--------------~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~~~~~-------~~~~v~  248 (301)
                          ....              .|.+ +|++     ++... .|.|.+.|+....     ....+..       ......
T Consensus       178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~-----~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q  251 (352)
T TIGR02658       178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRL-----VWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ  251 (352)
T ss_pred             CceEEeeeeeecCCccccccCCceEcCCCcE-----EEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence                0000              1122 4544     22223 3889999854322     2222111       112344


Q ss_pred             EEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          249 VLSISLDGKYLAMGS----------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       249 ~~~~s~~~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      -++++|+++.+++..          ..+.|.++|..+++.+..+..   ...+..++++|||+
T Consensus       252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgk  311 (352)
T TIGR02658       252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAK  311 (352)
T ss_pred             eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCC
Confidence            599999999888853          125799999999999988754   45899999999986

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=1.8e-10  Score=93.27  Aligned_cols=228  Identities=17%  Similarity=0.186  Sum_probs=137.9

Q ss_pred             CcceEEEECCCCCeEEEEec-----------CCcEEEEEEcCCccccccccccCCCCCCCCC-eeEEEEeeCCCEEEEee
Q 022184           64 GDPMTIAVNPSGDDFVCSTT-----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGG  131 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~-----------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~  131 (301)
                      ..|.-+.|||+.+||++=+.           ...+.|||+.++.....+...     ..... -.-..||.|++++|--.
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~-----~~~~~~WP~frWS~DdKy~Arm~  324 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI-----KSPYLKWPIFRWSHDDKYFARMT  324 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc-----CCCccccceEEeccCCceeEEec
Confidence            34889999999999998652           257999999999864433221     11111 23468999999998766


Q ss_pred             cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC-----CcEEEEeCC----------------------
Q 022184          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTE----------------------  184 (301)
Q Consensus       132 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~----------------------  184 (301)
                      . ..|.||+..+...+-...-.-..|....|+|.++.||.=...     ..+.+-.+.                      
T Consensus       325 ~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk  403 (698)
T KOG2314|consen  325 G-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK  403 (698)
T ss_pred             c-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc
Confidence            5 568899876644332222223467778888877777642210     011121111                      


Q ss_pred             CCceEEEE---------------------e--------ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC-c
Q 022184          185 DGVAWTFL---------------------T--------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-W  234 (301)
Q Consensus       185 ~~~~~~~~---------------------~--------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~  234 (301)
                      +|..+...                     .        ..-...+...+|-|.|....  .+.......++.+|.+++ .
T Consensus       404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~--vi~g~~~k~tvsfY~~e~~~  481 (698)
T KOG2314|consen  404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFA--VISGNTVKNTVSFYAVETNI  481 (698)
T ss_pred             CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEE--EEEccccccceeEEEeecCC
Confidence            11111100                     0        00123466789999999722  233334456788898873 2


Q ss_pred             eEeeee-eccCCCcEEEEEcCCCCEEEEee---CCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          235 NKIGHK-RLLRKPASVLSISLDGKYLAMGS---KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       235 ~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .....+ .......+.+.|+|.|++++++.   ..|.+.++|+.-..........|  ...+.+.|.|.||
T Consensus       482 ~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWDPtGR  550 (698)
T KOG2314|consen  482 KKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWDPTGR  550 (698)
T ss_pred             CchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceECCCCC
Confidence            221111 12235678899999999998874   56889999998544333332334  4577889999886

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.40  E-value=3.8e-10  Score=90.41  Aligned_cols=267  Identities=10%  Similarity=0.081  Sum_probs=168.0

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      +.-|+..++|+|.   +.+++....       ..|++|...... .+.       .+  ....|..+.|+|.+++|.+=+
T Consensus        31 ~~~p~~~~~~SP~---G~~l~~~~~-------~~V~~~~g~~~~-~l~-------~~--~~~~V~~~~fSP~~kYL~tw~   90 (561)
T COG5354          31 ENWPVAYVSESPL---GTYLFSEHA-------AGVECWGGPSKA-KLV-------RF--RHPDVKYLDFSPNEKYLVTWS   90 (561)
T ss_pred             cCcchhheeecCc---chheehhhc-------cceEEccccchh-hee-------ee--ecCCceecccCcccceeeeec
Confidence            3567888889977   556665332       334666543332 221       11  145688899999999998765


Q ss_pred             cCC---------------cEEEEEEcCCccccccccccC--------------------------------CCCCC----
Q 022184           83 TNG---------------GCKLFEVYGGATDINLLAKKM--------------------------------PPLQD----  111 (301)
Q Consensus        83 ~d~---------------~i~~w~~~~~~~~~~~~~~~~--------------------------------~~~~~----  111 (301)
                      ..+               .+.+||+.++.....+.....                                ....+    
T Consensus        91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~  170 (561)
T COG5354          91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKN  170 (561)
T ss_pred             cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhh
Confidence            433               489999887765111100000                                00000    


Q ss_pred             --CCCeeEEEEeeC--CCEEEE-----eecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEe---------
Q 022184          112 --AGPQKCLSFSVD--GSRFAA-----GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---------  173 (301)
Q Consensus       112 --~~~v~~~~~s~~--~~~l~~-----~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---------  173 (301)
                        ...+....|+|.  +..|+.     ....+++++|.+..+..+....-..-.=..+.|++.|++|+.--         
T Consensus       171 lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs  250 (561)
T COG5354         171 LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS  250 (561)
T ss_pred             ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccc
Confidence              145677788885  334443     34578899999876655433221122234688999999766421         


Q ss_pred             --CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEE
Q 022184          174 --TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS  251 (301)
Q Consensus       174 --~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~  251 (301)
                        ....+.|++++........  ...++|...+|.|.++..   .++.|-.+..+.++|++.. ..  +......=..+.
T Consensus       251 yfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F---~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~  322 (561)
T COG5354         251 YFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRF---AVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIF  322 (561)
T ss_pred             eeccceEEEEeecccccceec--cccccceeeeecccCCce---eEEecccccceeecccccc-eE--EecCCccccccc
Confidence              1245788888744433332  335679999999999972   2566778899999999875 33  233344556788


Q ss_pred             EcCCCCEEEEeeCC---CcEEEEeCCCceeec-cccccccCccEEEEEEccCCC
Q 022184          252 ISLDGKYLAMGSKD---GDICVVDVKKMEINH-WSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       252 ~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~-~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |+|.+++++.++.|   |.+.+||........ .+ .   ....+-+.|+|||+
T Consensus       323 fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~-~---~~n~s~~~wspd~q  372 (561)
T COG5354         323 FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF-N---GLNTSYCDWSPDGQ  372 (561)
T ss_pred             ccCcccEEEEecCCccccceEEeccCCceEEEEEe-e---cCCceEeeccCCce
Confidence            99999999998766   679999998776554 33 2   33456678999985

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.40  E-value=1.1e-09  Score=100.25  Aligned_cols=209  Identities=13%  Similarity=0.050  Sum_probs=136.3

Q ss_pred             CcceEEEECCCCCeEEEEec-CCcEEEEEEcCCccccccccccCC--CC--------CCCCCeeEEEEee-CCCEEEEee
Q 022184           64 GDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMP--PL--------QDAGPQKCLSFSV-DGSRFAAGG  131 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~-d~~i~~w~~~~~~~~~~~~~~~~~--~~--------~~~~~v~~~~~s~-~~~~l~~~~  131 (301)
                      .....++++++++.|+++.. .+.|+++|+.++.... +......  ..        ..-.....++++| ++.++++.+
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~t-lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRT-LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEE-EeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            45789999998887766654 4679999986654311 1000000  00        0012346899999 565666667


Q ss_pred             cCCeEEEEeCCCcceecc--------ccc------CCccEEEEEecCCCcE-EEEEeCCCcEEEEeCCCCceEEEEee--
Q 022184          132 VDGHLRIMHWPSLRIILD--------EPK------AHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTR--  194 (301)
Q Consensus       132 ~dg~i~v~d~~~~~~~~~--------~~~------~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~--  194 (301)
                      .++.|++||..++.....        ..+      .-.....++++|+++. +++-+.++.|++||+.++........  
T Consensus       703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~  782 (1057)
T PLN02919        703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP  782 (1057)
T ss_pred             CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence            789999999876643210        000      0124567999999984 45555678999999987653211100  


Q ss_pred             ----------cC--------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec-------------c
Q 022184          195 ----------NS--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-------------L  243 (301)
Q Consensus       195 ----------~~--------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------~  243 (301)
                                ..        -.....++++++|..     .++...++.|++||..++........             .
T Consensus       783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L-----YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~  857 (1057)
T PLN02919        783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI-----YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ  857 (1057)
T ss_pred             ccCcccccccCCCCchhhhhccCCceeeEeCCCcE-----EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence                      00        012468899999974     46677889999999987765422110             1


Q ss_pred             CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~  278 (301)
                      -.....++++++|+++++-+.++.|++||+.+++.
T Consensus       858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            12567899999999888888899999999988764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=3.3e-10  Score=91.75  Aligned_cols=212  Identities=15%  Similarity=0.133  Sum_probs=142.2

Q ss_pred             eEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC--CEEEE-----eecCCeEEEE
Q 022184           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAA-----GGVDGHLRIM  139 (301)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~-----~~~dg~i~v~  139 (301)
                      .+..|++|..+.+- -..+.+++|+..+.....        ..-|...+..+.+||.+  ..+|+     .+.-..++||
T Consensus       129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~--------~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~  199 (566)
T KOG2315|consen  129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ--------HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIY  199 (566)
T ss_pred             cccccccchhhhhh-hhcceEEEEecCCcccee--------eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEe
Confidence            47778877654432 234569999998744311        11145778899999863  33443     3456789999


Q ss_pred             eCCCccee-----cccccCCccEEEEEecCCCcE-E--EEEeCCC---------cEEEEeCCCCceEEEEeecCCCCeeE
Q 022184          140 HWPSLRII-----LDEPKAHKSVLDMDFSLDSEF-L--ATTSTDG---------SARIWKTEDGVAWTFLTRNSDEKIEL  202 (301)
Q Consensus       140 d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~-l--~~~~~d~---------~i~i~d~~~~~~~~~~~~~~~~~v~~  202 (301)
                      ........     +.+. ..+. ..+.|++-|+- |  ++...|.         ++++.++....+...+  ...++|.+
T Consensus       200 ~~~~~~~~~~~a~ksFF-kadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhd  275 (566)
T KOG2315|consen  200 KYPEEGQHQPVANKSFF-KADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHD  275 (566)
T ss_pred             ccccccccchhhhcccc-ccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceE
Confidence            87632211     1111 1123 35789987773 2  2232333         5888888744443333  34678999


Q ss_pred             EEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC---CcEEEEeCCCceee
Q 022184          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEIN  279 (301)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~  279 (301)
                      +.|+|+++.   ++++.|-.-..+.+||++. .++  +....++-+++-|+|.|++|+.++.+   |.|.|||+.+.+++
T Consensus       276 v~W~~s~~E---F~VvyGfMPAkvtifnlr~-~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  276 VTWSPSGRE---FAVVYGFMPAKVTIFNLRG-KPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             EEECCCCCE---EEEEEecccceEEEEcCCC-CEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence            999999987   3357777888999999974 444  33446677889999999999998765   78999999998888


Q ss_pred             ccccccccCccEEEEEEccCCC
Q 022184          280 HWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       280 ~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..+.    ...-+-++|+|||+
T Consensus       350 ~~~~----a~~tt~~eW~PdGe  367 (566)
T KOG2315|consen  350 AKFK----AANTTVFEWSPDGE  367 (566)
T ss_pred             cccc----cCCceEEEEcCCCc
Confidence            7764    34466789999995

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.38  E-value=1.1e-11  Score=96.08  Aligned_cols=165  Identities=15%  Similarity=0.128  Sum_probs=120.6

Q ss_pred             cceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee---cCCeEEEEeC
Q 022184           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---VDGHLRIMHW  141 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~v~d~  141 (301)
                      .+..+..++.+++||++..+....++++.......++..    ........+.+.|..+......+.   +...+.+|..
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~----~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLD----VSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeee----EeecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            355566788999999998888888888876543122111    111223345556655555554443   4455566665


Q ss_pred             CCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                      ..+.. ..+.+|-+.+++++|+||+++|+++.+|..|++-....-..+..+..+|...|..++.-++..      +++++
T Consensus       140 ~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~------LlS~s  212 (390)
T KOG3914|consen  140 DSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL------LLSGS  212 (390)
T ss_pred             cccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce------eeecC
Confidence            55444 345578889999999999999999999999999998888888888776777899999988766      68999


Q ss_pred             CcceEEEEEccCceEeeee
Q 022184          222 DKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~~~~~  240 (301)
                      .|++|++||+++++.+..+
T Consensus       213 GD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  213 GDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             CCCcEEEEecccCCccccc
Confidence            9999999999999876444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.38  E-value=1.8e-09  Score=80.81  Aligned_cols=211  Identities=13%  Similarity=0.058  Sum_probs=118.2

Q ss_pred             cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC------CCEEEEeecCCe
Q 022184           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD------GSRFAAGGVDGH  135 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~dg~  135 (301)
                      ....=..++||||+..||.+...|+|++||+.+.+........ .....-...|..+.|-+.      ...|++-..+|.
T Consensus        42 ~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~-~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~  120 (282)
T PF15492_consen   42 PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM-SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ  120 (282)
T ss_pred             CCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccc-ccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence            3445678999999999999999999999999875542211111 111122356777777552      224666677888


Q ss_pred             EEEEeCCCcc-----eecc--ccc-CCccEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceEEEEeecCCCCeeEEEEc
Q 022184          136 LRIMHWPSLR-----IILD--EPK-AHKSVLDMDFSLDSEFLATTSTDGS-ARIWKTEDGVAWTFLTRNSDEKIELCRFS  206 (301)
Q Consensus       136 i~v~d~~~~~-----~~~~--~~~-~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  206 (301)
                      ++-|-+..+.     ....  +.. ....|.++.++|..++|+.|+.... -.... ....-+..+..-.+.+-.....+
T Consensus       121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~-a~~~GLtaWRiL~~~Pyyk~v~~  199 (282)
T PF15492_consen  121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK-ASSCGLTAWRILSDSPYYKQVTS  199 (282)
T ss_pred             eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc-ccccCceEEEEcCCCCcEEEccc
Confidence            8777653221     1111  212 2358999999999888877764322 00000 00000111111111111111111


Q ss_pred             cCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      .+...     ....   .+..+|.+-+.+...........|..+..||||+.||+...+|.|.+|++.+..+....
T Consensus       200 ~~~~~-----~~~~---~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  200 SEDDI-----TASS---KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             cCccc-----cccc---cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            11110     0010   11233433332222222334567999999999999999999999999999987766544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.36  E-value=6.8e-10  Score=82.11  Aligned_cols=186  Identities=13%  Similarity=0.080  Sum_probs=128.8

Q ss_pred             eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCC--CeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc-eecc--cc
Q 022184           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG--PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILD--EP  151 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~--~~  151 (301)
                      .+..++.|.++++++++.+......         |..  .+.++.+++|++++++.+....|..|.++... .+..  ..
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~---------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a  200 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAV---------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA  200 (344)
T ss_pred             ceeeccCCcceeEEEEecCccccee---------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec
Confidence            4566778999999999876542111         222  37889999999999999999999999886532 2222  11


Q ss_pred             cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE----EEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (301)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (301)
                      ...+.-.+..|+.....+|++..||++.|||+|......    ....++.+.++.+.|++-|..-+   ++....-+.+.
T Consensus       201 ~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL---Lf~sEhfs~~h  277 (344)
T KOG4532|consen  201 PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL---LFISEHFSRVH  277 (344)
T ss_pred             ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE---EEEecCcceEE
Confidence            222455678899999999999999999999998754332    22345677899999999776533   34556678899


Q ss_pred             EEEccCceEeeeeeccC--------CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          228 VYDISTWNKIGHKRLLR--------KPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       228 ~~d~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      +.|++++...+.+....        ..+..-.|+.++..+.+.+++ .+.=|++.+
T Consensus       278 v~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  278 VVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             EEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence            99999886544333222        336677777777666666554 344555544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.33  E-value=5.8e-10  Score=82.47  Aligned_cols=222  Identities=11%  Similarity=0.044  Sum_probs=142.4

Q ss_pred             EEEECC-----CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeC
Q 022184           68 TIAVNP-----SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHW  141 (301)
Q Consensus        68 ~~~~~~-----~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~  141 (301)
                      .+.|.|     ...+||.++..|...+|...+.+....+...      +...|.-+.=.. ...-+..++.|.++++.++
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~------snn~v~~~~r~cd~~~~~~i~sndht~k~~~~  145 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDV------SNNDVTLVKRYCDLKFPLNIASNDHTGKTMVV  145 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecc------cccchhhhhhhcccccceeeccCCcceeEEEE
Confidence            355555     3348889999999999999877653332221      111111111001 1224667788888888887


Q ss_pred             CCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEE-EeecCCCCeeEEEEccCCCcceEEEEEE
Q 022184          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                      .-+..........-.+.++++++|++++++.++...|-.|.+.... .+.. ........-.+..|+.....     .++
T Consensus       146 ~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~-----FAv  220 (344)
T KOG4532|consen  146 SGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ-----FAV  220 (344)
T ss_pred             ecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce-----EEE
Confidence            6443322221111237899999999999999999999999987533 2222 22233333567888888776     688


Q ss_pred             eCCcceEEEEEccCceEe-----eeeeccCCCcEEEEEcCCC--CEEEEeeCCCcEEEEeCCCceeeccccc------cc
Q 022184          220 RGDKALLAVYDISTWNKI-----GHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKKMEINHWSKR------LH  286 (301)
Q Consensus       220 ~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~i~~~~~~~~~~~~~~------~~  286 (301)
                      +..||++.|||++.....     .....|++.++.+.|++.|  .+|+..-.-+.+.+.|++++...+.+..      .|
T Consensus       221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~  300 (344)
T KOG4532|consen  221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH  300 (344)
T ss_pred             EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence            999999999999875432     2334577899999999866  3566665668899999998865444321      12


Q ss_pred             cCccEEEEEEccCC
Q 022184          287 LGTSIALVEFCPTQ  300 (301)
Q Consensus       287 ~~~~v~~~~~spdg  300 (301)
                      ....|....|+.++
T Consensus       301 ~tq~ifgt~f~~~n  314 (344)
T KOG4532|consen  301 NTQHIFGTNFNNEN  314 (344)
T ss_pred             cccccccccccCCC
Confidence            12346666666554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.33  E-value=1.4e-10  Score=87.47  Aligned_cols=253  Identities=15%  Similarity=0.172  Sum_probs=154.4

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccC------------CcceEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTIA   70 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~   70 (301)
                      ....|+++.|-..   +.++++|..++.+      .++.-.... ..  .......+++|.            ..|..+.
T Consensus        25 ead~ItaVefd~t---g~YlatGDkgGRV------vlfer~~s~-~c--eykf~teFQshe~EFDYLkSleieEKin~I~   92 (460)
T COG5170          25 EADKITAVEFDET---GLYLATGDKGGRV------VLFEREKSY-GC--EYKFFTEFQSHELEFDYLKSLEIEEKINAIE   92 (460)
T ss_pred             ccceeeEEEeccc---cceEeecCCCceE------EEeeccccc-cc--chhhhhhhcccccchhhhhhccHHHHhhhee
Confidence            3456888888766   7899998854432      344322211 11  111122344443            3488899


Q ss_pred             ECCCCC--eEEEEecCCcEEEEEEcCCcccc----------------------ccc--------------cccCCCCCCC
Q 022184           71 VNPSGD--DFVCSTTNGGCKLFEVYGGATDI----------------------NLL--------------AKKMPPLQDA  112 (301)
Q Consensus        71 ~~~~~~--~l~~~~~d~~i~~w~~~~~~~~~----------------------~~~--------------~~~~~~~~~~  112 (301)
                      |..++.  .++..+.|.+|++|.+.......                      .+.              ......-.|.
T Consensus        93 w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~  172 (460)
T COG5170          93 WFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP  172 (460)
T ss_pred             eecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence            876543  56666799999999987552200                      000              0001112344


Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce---ecccccCC-----ccEEEEEecCC-CcEEEEEeCCCcEEEEeC
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSLD-SEFLATTSTDGSARIWKT  183 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~  183 (301)
                      ..+.++.|+.|...++++. |=.|.+|++.-...   +..+..|.     .-|++..|+|. ...+.-.+..|.|++-|+
T Consensus       173 yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl  251 (460)
T COG5170         173 YHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL  251 (460)
T ss_pred             eEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence            5678889998888887765 77899998853221   22233333     24788899994 446677778899999999


Q ss_pred             CCCceEE------EEee---------cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-EeeeeeccC---
Q 022184          184 EDGVAWT------FLTR---------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLR---  244 (301)
Q Consensus       184 ~~~~~~~------~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~---  244 (301)
                      |+.....      ....         .--..|..+.|+++|++     +++ ..--+|++||.+..+ ++.++..|.   
T Consensus       252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry-----Ils-RdyltvkiwDvnm~k~pikTi~~h~~l~  325 (460)
T COG5170         252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY-----ILS-RDYLTVKIWDVNMAKNPIKTIPMHCDLM  325 (460)
T ss_pred             hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcE-----EEE-eccceEEEEecccccCCceeechHHHHH
Confidence            8543211      1110         01124788999999997     343 445689999987643 344443331   


Q ss_pred             ---------CCc---EEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          245 ---------KPA---SVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       245 ---------~~v---~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                               ..|   ..+.||.|.+.+.+|+..+..-+|-..
T Consensus       326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                     122   357889999999999988887777643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.33  E-value=7.7e-09  Score=80.20  Aligned_cols=211  Identities=15%  Similarity=0.105  Sum_probs=136.4

Q ss_pred             EEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEe-eCCCEEEEeecCCeEEEEeCCCcc
Q 022184           68 TIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSLR  145 (301)
Q Consensus        68 ~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~v~d~~~~~  145 (301)
                      ++.|.+ ++.++++--..+.|..|+..++.....         .. .....+++. +++ .|+.+...+ +.++|+.+++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~---------~~-~~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI---------DL-PGPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGK   71 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE---------ES-SSEEEEEEECTTS-EEEEEETTC-EEEEETTTTE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE---------ec-CCCceEEEEccCC-EEEEEEcCc-eEEEecCCCc
Confidence            678888 565556655678899999877654211         01 126778888 564 555555444 5666988875


Q ss_pred             eeccccc-----CCccEEEEEecCCCcEEEEEeCC--------CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc
Q 022184          146 IILDEPK-----AHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (301)
Q Consensus       146 ~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (301)
                      .......     .....+.+++.|+|++.++....        |.+..++.. ++.......  -...+.++|+|+++.+
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTSSEE
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcchhe
Confidence            4322221     23478899999999977776543        456667766 444333332  2347899999999973


Q ss_pred             eEEEEEEeCCcceEEEEEccCceE----eeee-eccC--CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccc
Q 022184          213 FLFCTVQRGDKALLAVYDISTWNK----IGHK-RLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (301)
Q Consensus       213 ~~~~~~~~~~~~~i~~~d~~~~~~----~~~~-~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~  285 (301)
                          .++.+..+.|..|++.....    ...+ ....  .....++++.+|++.++....+.|.+++.+ ++.+..+...
T Consensus       149 ----yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p  223 (246)
T PF08450_consen  149 ----YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP  223 (246)
T ss_dssp             ----EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred             ----eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence                35667788899999863221    1112 1122  237789999999988887788999999988 8777766433


Q ss_pred             ccCccEEEEEEc-cCC
Q 022184          286 HLGTSIALVEFC-PTQ  300 (301)
Q Consensus       286 ~~~~~v~~~~~s-pdg  300 (301)
                        ...+++++|. ||.
T Consensus       224 --~~~~t~~~fgg~~~  237 (246)
T PF08450_consen  224 --VPRPTNCAFGGPDG  237 (246)
T ss_dssp             --SSSEEEEEEESTTS
T ss_pred             --CCCEEEEEEECCCC
Confidence              3589999994 543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.31  E-value=4.1e-10  Score=86.00  Aligned_cols=219  Identities=13%  Similarity=0.157  Sum_probs=157.4

Q ss_pred             CCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC--CCCCeeEEEEeeCCCEEEE
Q 022184           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ--DAGPQKCLSFSVDGSRFAA  129 (301)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~  129 (301)
                      .|.....++||.+.|++...-|..+-+++.+.|.++++|--.+...-       -+.+.  -..+++++.+.++...|+.
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~-------wpsI~~~mP~~~~~~~y~~e~~~L~v   85 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY-------WPSIYHYMPSPCSAMEYVSESRRLYV   85 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc-------CchhhhhCCCCceEeeeeccceEEEE
Confidence            45556678999999999999998889999999999999976544331       11222  2467899999999999999


Q ss_pred             eecCCeEEEEeCC----CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEE
Q 022184          130 GGVDGHLRIMHWP----SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (301)
Q Consensus       130 ~~~dg~i~v~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  205 (301)
                      |-..|++.-+.+.    .....+....|...+..+-|+-..+++++.+.|..+.---.+.+..+..+.....  ..++.+
T Consensus        86 g~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~  163 (404)
T KOG1409|consen   86 GQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP--ASALQF  163 (404)
T ss_pred             EEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc--CCCCce
Confidence            9999999988653    3444556677888999999999899999999998876655555554433321111  111111


Q ss_pred             ccCCCcceEEEEEEeCCcceEEEEEc--cCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          206 SKDGTKPFLFCTVQRGDKALLAVYDI--STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~d~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      .-.       +...+...+.|.+-.+  ..-.++..+.+|...+++++|.|..+.|.+|..|..+.+||+...+-.....
T Consensus       164 d~~-------~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el  236 (404)
T KOG1409|consen  164 DAL-------YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL  236 (404)
T ss_pred             eeE-------EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee
Confidence            111       1455555666665544  3345677889999999999999999999999999999999997654443333


Q ss_pred             ccc
Q 022184          284 RLH  286 (301)
Q Consensus       284 ~~~  286 (301)
                      .+|
T Consensus       237 ~gh  239 (404)
T KOG1409|consen  237 QGH  239 (404)
T ss_pred             ccc
Confidence            444

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=1.8e-11  Score=99.24  Aligned_cols=215  Identities=14%  Similarity=0.117  Sum_probs=150.4

Q ss_pred             eeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ....+.||+..|..++--.+.+.+++++.|++|++|.++..........-......|..+|..+.|-.+-++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            3456789999999998877888899999999999999975433222211123344588899999999888777765  78


Q ss_pred             eEEEEeCCCcceeccccc--CCccEEEEEecC--CCcEE-EEEeCCCcEEEEeCCCCceEEEEeec----CCCCeeEEEE
Q 022184          135 HLRIMHWPSLRIILDEPK--AHKSVLDMDFSL--DSEFL-ATTSTDGSARIWKTEDGVAWTFLTRN----SDEKIELCRF  205 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~  205 (301)
                      -|.+||.--+..+.++..  .++.+..+.--|  +...+ +-++...+|+++|.+.++....++..    ....+++++.
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            899999866666543332  122333333333  33333 44478899999999998877776532    2245889999


Q ss_pred             ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEE-EeCCCce
Q 022184          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV-VDVKKME  277 (301)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i-~~~~~~~  277 (301)
                      .+.|++     ++.+-.+|.|.+.|.++++.+......+.....++ .|..+.|+....|..+.+ |...++.
T Consensus       885 a~~GN~-----lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  885 ADKGNK-----LAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             ccCcch-----hhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence            999998     67788899999999999998766655554444433 345566666667777777 7655543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.30  E-value=3.3e-11  Score=100.58  Aligned_cols=248  Identities=11%  Similarity=0.085  Sum_probs=165.1

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEEecCC
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTNG   85 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~   85 (301)
                      |-..+|++.+.... -++....      ....+|.+.....     ...+..+.+|...|+.+.|+|... .+++++.|-
T Consensus        70 vad~qws~h~a~~~-wiVsts~------qkaiiwnlA~ss~-----~aIef~lhghsraitd~n~~~q~pdVlatcsvdt  137 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPY-WIVSTSN------QKAIIWNLAKSSS-----NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT  137 (1081)
T ss_pred             hcceecccCCCCce-eEEecCc------chhhhhhhhcCCc-----cceEEEEecCccceeccccCCCCCcceeeccccc
Confidence            34567887765333 3333322      2225777754432     223567899999999999999665 778999999


Q ss_pred             cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc-eecccccCCccEEEEEecC
Q 022184           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSL  164 (301)
Q Consensus        86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~  164 (301)
                      .+..||+.+.........      .-......++|+-....+++.+....|++||++.+. ++..+.+|...|..++|+.
T Consensus       138 ~vh~wd~rSp~~p~ys~~------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr  211 (1081)
T KOG0309|consen  138 YVHAWDMRSPHRPFYSTS------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR  211 (1081)
T ss_pred             cceeeeccCCCcceeeee------cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh
Confidence            999999988765332221      123455778998744445555667889999998654 4556667777888888876


Q ss_pred             -CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC----------
Q 022184          165 -DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST----------  233 (301)
Q Consensus       165 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----------  233 (301)
                       -...+.+++.|++|+.||................++..-.+-|-|....+  ....+ +..+.+++.++          
T Consensus       212 ~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~--mp~~G-~n~v~~~~c~n~d~e~n~~~~  288 (1081)
T KOG0309|consen  212 FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI--MPMVG-GNMVPQLRCENSDLEWNVFDL  288 (1081)
T ss_pred             hhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe--ccccC-CeeeeeccccchhhhhccccC
Confidence             33468899999999999987654333333334567888888887775322  12222 22555554332          


Q ss_pred             ceEeeeeeccCCCcEEEEEcCCC----------CEEEEeeCCCcEEEEeCCC
Q 022184          234 WNKIGHKRLLRKPASVLSISLDG----------KYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~~~d~~i~i~~~~~  275 (301)
                      .+++..+.+|...|-...|-..+          -.|++-+.|..+++|-+.+
T Consensus       289 ~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  289 NTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            34577888888877666664322          2689999999999999864

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.29  E-value=5.2e-10  Score=89.65  Aligned_cols=227  Identities=14%  Similarity=0.123  Sum_probs=157.2

Q ss_pred             cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC------
Q 022184           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------  133 (301)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------  133 (301)
                      ....-++..++|||.|.+|++....+ |.+|.-.......        .+ ....|..+.|||++++|.+=+..      
T Consensus        29 ~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~--------~~-~~~~V~~~~fSP~~kYL~tw~~~pi~~pe   98 (561)
T COG5354          29 ESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV--------RF-RHPDVKYLDFSPNEKYLVTWSREPIIEPE   98 (561)
T ss_pred             cccCcchhheeecCcchheehhhccc-eEEccccchhhee--------ee-ecCCceecccCcccceeeeeccCCccChh
Confidence            33567899999999999999987777 9999877665321        12 23568899999999999986533      


Q ss_pred             ---------CeEEEEeCCCcceecccccCCcc--EE-EEEecCCCcEEEEEeCCCcEEEEeCCCCce-EEEEeecCCCCe
Q 022184          134 ---------GHLRIMHWPSLRIILDEPKAHKS--VL-DMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKI  200 (301)
Q Consensus       134 ---------g~i~v~d~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v  200 (301)
                               ..+.+||..++..+..+.....+  .+ -+.|+.+.++.|-. ....++++++ ++.. ...+..-....+
T Consensus        99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi  176 (561)
T COG5354          99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGI  176 (561)
T ss_pred             hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccce
Confidence                     35999999999988777655544  44 67888888876655 3467999997 3221 111111122348


Q ss_pred             eEEEEccCCCcceEEEEE--EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee-----------CCCc
Q 022184          201 ELCRFSKDGTKPFLFCTV--QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-----------KDGD  267 (301)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~d~~  267 (301)
                      ....|+|.+++.-++...  ..+..+++++|.+.....+......+..-..+.|.+.|++|++--           ....
T Consensus       177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn  256 (561)
T COG5354         177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN  256 (561)
T ss_pred             eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence            889999987664422211  346788999999987777655554454556789999999877532           1246


Q ss_pred             EEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       268 i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++|+++.........  .- .++|..++|.|+++
T Consensus       257 Lyl~~~~e~~i~V~~--~~-~~pVhdf~W~p~S~  287 (561)
T COG5354         257 LYLLRITERSIPVEK--DL-KDPVHDFTWEPLSS  287 (561)
T ss_pred             EEEEeecccccceec--cc-cccceeeeecccCC
Confidence            888888744433321  22 68999999999874

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=2.4e-10  Score=95.45  Aligned_cols=228  Identities=12%  Similarity=0.130  Sum_probs=160.9

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcccccc--------ccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINL--------LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      .....+++|+....++++|+.||.+++..+.+.....+.        .........|.+.|.-+.|+.+.+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            345789999999999999999999999998765432221        111223345788999999999999999999999


Q ss_pred             eEEEEeCCCcceeccccc--CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE-EEeecCCCCeeEEEEccCCCc
Q 022184          135 HLRIMHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      .|.+|-+-.+.....+..  ..+-|.+++|+.||..+...-.||.|.+=.+....... .+++   .....+.|++|.+.
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg---~~l~hv~ws~D~~~  170 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG---QLLAHVLWSEDLEQ  170 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch---heccceeecccHHH
Confidence            999999877765443332  33568999999999999999999999887775443221 1222   12457889999987


Q ss_pred             ceEEEEEEeCCcceEEEEEccCce-------E-e---eeeeccCCCcEEEEE--------cCCCCEEEEeeCCCcEEEEe
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWN-------K-I---GHKRLLRKPASVLSI--------SLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~-------~-~---~~~~~~~~~v~~~~~--------s~~~~~l~~~~~d~~i~i~~  272 (301)
                           +..+-..|.+++||....-       + +   ..+......+..+.|        -||...|+++-.+|.+.|..
T Consensus       171 -----~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR  245 (1189)
T KOG2041|consen  171 -----ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR  245 (1189)
T ss_pred             -----HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence                 4555667899999975321       1 1   011111223555555        35778999999999999887


Q ss_pred             CCCceeeccccccccCccEEEEEEccCCC
Q 022184          273 VKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      -.+......+..   ...+....|+|+|.
T Consensus       246 ~eND~~Pvv~dt---gm~~vgakWnh~G~  271 (1189)
T KOG2041|consen  246 SENDPEPVVVDT---GMKIVGAKWNHNGA  271 (1189)
T ss_pred             hcCCCCCeEEec---ccEeecceecCCCc
Confidence            766554444432   35788889998873

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.28  E-value=9.3e-09  Score=94.41  Aligned_cols=228  Identities=11%  Similarity=0.080  Sum_probs=144.4

Q ss_pred             ceEEEECCC-CCeEEEEecCCcEEEEEEcCCcccccccc-ccCCC------CCCCCCeeEEEEeeCCCEEEEee-cCCeE
Q 022184           66 PMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLA-KKMPP------LQDAGPQKCLSFSVDGSRFAAGG-VDGHL  136 (301)
Q Consensus        66 v~~~~~~~~-~~~l~~~~~d~~i~~w~~~~~~~~~~~~~-~~~~~------~~~~~~v~~~~~s~~~~~l~~~~-~dg~i  136 (301)
                      ...+++++. ++.+++-...+.|+++|..+... ..... .....      ...-.....++++++++.|+++. .++.|
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            356888875 55556666678899999765422 11111 00000      00113468899999888766655 45789


Q ss_pred             EEEeCCCcceeccccc----------C-------CccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeec---
Q 022184          137 RIMHWPSLRIILDEPK----------A-------HKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRN---  195 (301)
Q Consensus       137 ~v~d~~~~~~~~~~~~----------~-------~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---  195 (301)
                      +++|+.++... .+.+          .       -.....++++| ++..+++.+.++.|++||..++.... +...   
T Consensus       649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~  726 (1057)
T PLN02919        649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE  726 (1057)
T ss_pred             EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence            99998765432 1110          0       11346899999 56667777788999999998765432 2110   


Q ss_pred             -----------CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee-------------c--------c
Q 022184          196 -----------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------L--------L  243 (301)
Q Consensus       196 -----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------------~--------~  243 (301)
                                 .-.....++++|++..+    .++...++.|++||+.++.......             .        .
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~L----YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~  802 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKEL----YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL  802 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEE----EEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence                       01235679999999863    3566778899999998754321000             0        0


Q ss_pred             CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccc------------ccCccEEEEEEccCCC
Q 022184          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL------------HLGTSIALVEFCPTQR  301 (301)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~------------~~~~~v~~~~~spdg~  301 (301)
                      -.....++++++|+++++-..+++|++||..++........+            . -.....+++++||+
T Consensus       803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~-l~~P~GIavd~dG~  871 (1057)
T PLN02919        803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ-LSEPAGLALGENGR  871 (1057)
T ss_pred             ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc-cCCceEEEEeCCCC
Confidence            113468899999998888888999999999887765432111            1 12567899999885

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=5.9e-10  Score=90.32  Aligned_cols=223  Identities=13%  Similarity=0.112  Sum_probs=150.9

Q ss_pred             cceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-----------C
Q 022184           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------D  133 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------d  133 (301)
                      .=+-+.|||-|.||++--..| |.+|-=++-..        ...+.| ..|.-+.|||+.++|++-+.           .
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r--------~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~  281 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDR--------IQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG  281 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHH--------HHhccC-CCceeeecCCccceEEEecCCccccCcccCCC
Confidence            356789999999999998888 99997655443        233333 46888999999999998542           2


Q ss_pred             CeEEEEeCCCcceecccccCC--ccE-EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC
Q 022184          134 GHLRIMHWPSLRIILDEPKAH--KSV-LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~~--~~i-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (301)
                      ..++|||+.+|...+.+....  ..+ .-+.|+.|++++|-... ..|.||+..+...+..-.... ..|....|+|.+.
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki-~gIr~FswsP~~~  359 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI-SGIRDFSWSPTSN  359 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCC-ccccCcccCCCcc
Confidence            579999999998877665422  222 23679999999987765 679999987644433222222 2488999999988


Q ss_pred             cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeec
Q 022184          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS----------KDGDICVVDVKKMEINH  280 (301)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~~~~~~~~~~  280 (301)
                      .+.+..--+...-..+.+..+.+++.++....++-.-..+-|-.+|.+|+.--          .-..+.|+.++......
T Consensus       360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv  439 (698)
T KOG2314|consen  360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV  439 (698)
T ss_pred             eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence            53221111222335677788877777766655554445677888899888642          12246677777665443


Q ss_pred             cccccccCccEEEEEEccCCC
Q 022184          281 WSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       281 ~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .... - ...|-.++|-|.|.
T Consensus       440 e~ve-l-ke~vi~FaWEP~gd  458 (698)
T KOG2314|consen  440 EVVE-L-KESVIAFAWEPHGD  458 (698)
T ss_pred             eeee-c-chheeeeeeccCCC
Confidence            3212 2 67899999999873

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.28  E-value=9.9e-09  Score=92.63  Aligned_cols=246  Identities=11%  Similarity=0.131  Sum_probs=145.1

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCC--CcceeeeCCceeccccccCCcceEEEECCCCCeEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP--KTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~   80 (301)
                      ....|.++.+.++.+ ...+++.        .|.|-+..+++  ......       ....-...|.+++||||++.|+.
T Consensus        74 ~~~~ivs~~yl~d~~-~l~~~~~--------~Gdi~~~~~~~~~~~~~~E-------~VG~vd~GI~a~~WSPD~Ella~  137 (928)
T PF04762_consen   74 PNDKIVSFQYLADSE-SLCIALA--------SGDIILVREDPDPDEDEIE-------IVGSVDSGILAASWSPDEELLAL  137 (928)
T ss_pred             CCCcEEEEEeccCCC-cEEEEEC--------CceEEEEEccCCCCCceeE-------EEEEEcCcEEEEEECCCcCEEEE
Confidence            346788888887732 2333442        23334444433  222211       11223678999999999999999


Q ss_pred             EecCCcEEEEEEcCCcc-----------------------cccccccc---------C--------CCCCCCCCeeEEEE
Q 022184           81 STTNGGCKLFEVYGGAT-----------------------DINLLAKK---------M--------PPLQDAGPQKCLSF  120 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~-----------------------~~~~~~~~---------~--------~~~~~~~~v~~~~~  120 (301)
                      ++.++++.+...+-.-.                       ...+....         .        ..+.....-..++|
T Consensus       138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW  217 (928)
T PF04762_consen  138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW  217 (928)
T ss_pred             EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE
Confidence            99898888765320000                       00100000         0        00112234567889


Q ss_pred             eeCCCEEEEeec---C---CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCceEEE
Q 022184          121 SVDGSRFAAGGV---D---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTF  191 (301)
Q Consensus       121 s~~~~~l~~~~~---d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~  191 (301)
                      -.||.++|+.+-   .   ..++||+-+ |......+.-.+--.+++|.|.|++||+.-.   ...|.+|. ++|-.-..
T Consensus       218 RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhge  295 (928)
T PF04762_consen  218 RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGE  295 (928)
T ss_pred             CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeee
Confidence            999999998764   2   579999954 6554443333333457899999999998764   23466666 44544444


Q ss_pred             Eee---cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe--eeeecc-CCCcEEEEEcCCC-CEEEEeeC
Q 022184          192 LTR---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI--GHKRLL-RKPASVLSISLDG-KYLAMGSK  264 (301)
Q Consensus       192 ~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~-~~~v~~~~~s~~~-~~l~~~~~  264 (301)
                      +..   +....+..+.|++|+..+     +..-.| .|.+|-..+..-.  +.+... ...+..+.|+|.. ..|...+.
T Consensus       296 F~l~~~~~~~~v~~l~Wn~ds~iL-----Av~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~  369 (928)
T PF04762_consen  296 FTLRFDPEEEKVIELAWNSDSEIL-----AVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTS  369 (928)
T ss_pred             EecCCCCCCceeeEEEECCCCCEE-----EEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEec
Confidence            433   234579999999999962     332233 4999998876522  222221 2344559999953 45666666


Q ss_pred             CCcEEEEe
Q 022184          265 DGDICVVD  272 (301)
Q Consensus       265 d~~i~i~~  272 (301)
                      +|.+..++
T Consensus       370 ~g~~~~~~  377 (928)
T PF04762_consen  370 NGQYEIYD  377 (928)
T ss_pred             CCcEEEEE
Confidence            56665544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.28  E-value=7.7e-09  Score=93.32  Aligned_cols=273  Identities=13%  Similarity=0.112  Sum_probs=163.4

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcc--eeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT--SVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      .++...+|.+..+ ..+++++...    .+..+++..+.....  .+..-+..  ......+.|.++.+-++...++.+.
T Consensus        22 ~~~~~~~~d~~sd-~i~~~~~~~~----~~~~i~~~~~~~~~~~~~l~s~~~~--~~~~~~~~ivs~~yl~d~~~l~~~~   94 (928)
T PF04762_consen   22 LPITATAFDSDSD-SIYFVLGPNE----IDYVIELDRFSQDGSVEVLASWDAP--LPDDPNDKIVSFQYLADSESLCIAL   94 (928)
T ss_pred             cccceEEEecCCC-eEEEEECCCC----cceEEEEEeeccCCceeEEEecccc--CCcCCCCcEEEEEeccCCCcEEEEE
Confidence            3566777765421 3445554321    223455555554431  11110000  0023467899999999999999999


Q ss_pred             cCCcEEEE----EEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC---------------C
Q 022184           83 TNGGCKLF----EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP---------------S  143 (301)
Q Consensus        83 ~d~~i~~w----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~---------------~  143 (301)
                      .+|.|.+.    +......  ...    .  .-...|.+++||||+..|+..+.++++.+..-.               .
T Consensus        95 ~~Gdi~~~~~~~~~~~~~~--E~V----G--~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~  166 (928)
T PF04762_consen   95 ASGDIILVREDPDPDEDEI--EIV----G--SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGE  166 (928)
T ss_pred             CCceEEEEEccCCCCCcee--EEE----E--EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCC
Confidence            99999999    3333222  110    0  134689999999999999999989988776420               0


Q ss_pred             --------cceeccccc------------------------CCccEEEEEecCCCcEEEEEeC---C---CcEEEEeCCC
Q 022184          144 --------LRIILDEPK------------------------AHKSVLDMDFSLDSEFLATTST---D---GSARIWKTED  185 (301)
Q Consensus       144 --------~~~~~~~~~------------------------~~~~i~~~~~~~~~~~l~~~~~---d---~~i~i~d~~~  185 (301)
                              |+...++.+                        ..+.-..++|-.||+++|+.+.   .   ..++||+-+ 
T Consensus       167 ~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-  245 (928)
T PF04762_consen  167 SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-  245 (928)
T ss_pred             CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-
Confidence                    000011100                        1123457889999999998774   2   469999954 


Q ss_pred             CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee----ccCCCcEEEEEcCCCCEEEE
Q 022184          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR----LLRKPASVLSISLDGKYLAM  261 (301)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~  261 (301)
                      |.....-. ...+--..++|.|.|+.+  +..-.-.....|.+|..+. -.-..+.    .....+..+.|++|+..||.
T Consensus       246 G~L~stSE-~v~gLe~~l~WrPsG~lI--A~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv  321 (928)
T PF04762_consen  246 GELQSTSE-PVDGLEGALSWRPSGNLI--ASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAV  321 (928)
T ss_pred             ceEEeccc-cCCCccCCccCCCCCCEE--EEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEE
Confidence            55433333 333345688999999962  1111222345677777543 2222222    23467899999999999999


Q ss_pred             eeCCCcEEEEeCCCceee--ccccccccCccEEEEEEccC
Q 022184          262 GSKDGDICVVDVKKMEIN--HWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       262 ~~~d~~i~i~~~~~~~~~--~~~~~~~~~~~v~~~~~spd  299 (301)
                      .-.|. |.+|-..+....  +.+.-.. ...+..+.|+|.
T Consensus       322 ~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe  359 (928)
T PF04762_consen  322 WLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPE  359 (928)
T ss_pred             EecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCC
Confidence            87665 999999876422  1111111 334555888874

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.23  E-value=6.8e-11  Score=107.44  Aligned_cols=175  Identities=9%  Similarity=0.091  Sum_probs=127.7

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  112 (301)
                      .|+.+++|.|.......      .....+. ..|+.+.|+.+|+.+..+..||.+.+|.....-.        .....|.
T Consensus      2228 ~dgsv~~~~w~~~~~v~------~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~--------~s~qchn 2292 (2439)
T KOG1064|consen 2228 QDGSVRMFEWGHGQQVV------CFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY--------TSWQCHN 2292 (2439)
T ss_pred             CCceEEEEeccCCCeEE------EeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcce--------eccccCC
Confidence            67778999997655332      1222333 8899999999999999999999999999872211        2222366


Q ss_pred             CCeeEEEEeeCCCEEEEee---cCCeEEEEeCCCc-ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 022184          113 GPQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~---~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  188 (301)
                      .....+.|-.  ..+++++   .++.+.+||..-. ..-.....|.+.++++++-|..+.|++|+++|.|++||++..+.
T Consensus      2293 k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2293 KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred             ccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence            6667777754  5666654   4689999996321 11122267888999999999999999999999999999998887


Q ss_pred             EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      ++.++.          +. ...+     +++++..|.++||++.....+..+
T Consensus      2371 ~h~~~~----------~~-~~~~-----f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2371 RHTFQA----------LD-TREY-----FVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             HHHhhh----------hh-hhhe-----eeccCcccceEEEEccccchhhcC
Confidence            766653          22 2222     588899999999999877665444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.21  E-value=2.8e-10  Score=88.52  Aligned_cols=155  Identities=16%  Similarity=0.220  Sum_probs=103.5

Q ss_pred             ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC---cEEEEEEcCC
Q 022184           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG---GCKLFEVYGG   95 (301)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~---~i~~w~~~~~   95 (301)
                      +.++|++.+.      ....++.+..+....  .......+   ....+++.|..+......+..-|   .+.+|....+
T Consensus        74 ~~llAv~~~~------K~~~~f~~~~~~~~~--kl~~~~~v---~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   74 GRLVAVATSS------KQRAVFDYRENPKGA--KLLDVSCV---PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             ceEEEEEeCC------CceEEEEEecCCCcc--eeeeEeec---ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            6788886632      222466665544311  11111122   23345555555555555544444   4444444433


Q ss_pred             ccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc-cCCccEEEEEecCCCcEEEEEeC
Q 022184           96 ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTST  174 (301)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~  174 (301)
                      ..        ...+.|...+..++|+||+++|+++..|..|++-....--.+..+. +|..-|..++.-++ ..|++++.
T Consensus       143 ~~--------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG  213 (390)
T KOG3914|consen  143 RC--------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG  213 (390)
T ss_pred             Cc--------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC
Confidence            32        4566788999999999999999999999999998887655555544 57778999998864 45999999


Q ss_pred             CCcEEEEeCCCCceEEEEe
Q 022184          175 DGSARIWKTEDGVAWTFLT  193 (301)
Q Consensus       175 d~~i~i~d~~~~~~~~~~~  193 (301)
                      |+++++||+++++.+..+.
T Consensus       214 D~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCcEEEEecccCCcccccc
Confidence            9999999999999886654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=1.3e-10  Score=97.10  Aligned_cols=225  Identities=13%  Similarity=0.125  Sum_probs=152.6

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC--CEEEEeecCCeEEEEe
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMH  140 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~v~d  140 (301)
                      .+.+.++..+|.|+-++.+++-| +.+.|+...-.+.+.....     ..-.+-...|+|..  .+-++......-.+|+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~-----tpw~vad~qws~h~a~~~wiVsts~qkaiiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHI-----TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN   97 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeecc-----CcchhcceecccCCCCceeEEecCcchhhhhh
Confidence            56788899999999999999888 8888887665433322211     11345677888843  3344444455566888


Q ss_pred             CCCc---ceecccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceE-EEEeecCCCCeeEEEEccCCCcceEE
Q 022184          141 WPSL---RIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       141 ~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      +...   .....+-+|...|+.+.|+|+.. .+++++.|..+..||+++.... ..+..- ......++|+-....    
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-~s~asqVkwnyk~p~----  172 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-RSAASQVKWNYKDPN----  172 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc-cccCceeeecccCcc----
Confidence            7432   22233456777999999999654 8999999999999999986543 333322 234678899876665    


Q ss_pred             EEEEeCCcceEEEEEccCce-EeeeeeccCCCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE
Q 022184          216 CTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~  293 (301)
                       +.+.+....|.+||++.+. ++..++.|-..+..+.|.. ....+.+.+.|++|++||.............- ..+|+.
T Consensus       173 -vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~  250 (1081)
T KOG0309|consen  173 -VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWR  250 (1081)
T ss_pred             -hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCccee
Confidence             5666777889999998764 5566777777888888865 34568888999999999987543221111112 456666


Q ss_pred             EEEccCC
Q 022184          294 VEFCPTQ  300 (301)
Q Consensus       294 ~~~spdg  300 (301)
                      -.+.|=|
T Consensus       251 ~r~~Pfg  257 (1081)
T KOG0309|consen  251 GRYLPFG  257 (1081)
T ss_pred             ccccccC
Confidence            6665543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=2e-08  Score=84.95  Aligned_cols=237  Identities=13%  Similarity=0.090  Sum_probs=161.0

Q ss_pred             EEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC------------
Q 022184            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG------------   75 (301)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------   75 (301)
                      .++.|+|.    .++|.|.+.-         +..+|....+.      ...+..|...|+.+.|.|..            
T Consensus        19 ~A~Dw~~~----GLiAygshsl---------V~VVDs~s~q~------iqsie~h~s~V~~VrWap~~~p~~llS~~~~~   79 (1062)
T KOG1912|consen   19 NAADWSPS----GLIAYGSHSL---------VSVVDSRSLQL------IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQ   79 (1062)
T ss_pred             cccccCcc----ceEEEecCce---------EEEEehhhhhh------hhccccCccceeEEEeccCCCchhccCccccc
Confidence            45678765    3788866422         33444443322      45577889999999997621            


Q ss_pred             CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee---CC-CEEEEeecCCeEEEEeCCCcceecccc
Q 022184           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV---DG-SRFAAGGVDGHLRIMHWPSLRIILDEP  151 (301)
Q Consensus        76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~  151 (301)
                      -.||++...|.|.+||.......       ....++..++..++|-+   +. ..|++-.....+.+|+..+|+...+..
T Consensus        80 lliAsaD~~GrIil~d~~~~s~~-------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~  152 (1062)
T KOG1912|consen   80 LLIASADISGRIILVDFVLASVI-------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD  152 (1062)
T ss_pred             eeEEeccccCcEEEEEehhhhhh-------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence            15667777899999999876542       22223567888888877   34 456666778899999999999988877


Q ss_pred             cCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCC-------CceEEEEeecCC----------------CC--------
Q 022184          152 KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED-------GVAWTFLTRNSD----------------EK--------  199 (301)
Q Consensus       152 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~----------------~~--------  199 (301)
                      ..+....|+.+.| |.+.+...+..|.+.+-+.-.       ++..+....+.+                .+        
T Consensus       153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity  232 (1062)
T KOG1912|consen  153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY  232 (1062)
T ss_pred             cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence            7777888899999 667777767677776665421       122221111110                00        


Q ss_pred             eeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCC--CEEEEeeCCCcEEEEeCCC
Q 022184          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~i~~~~~  275 (301)
                      ...++|+|.-+.+.+     ......+.++|++-..++.......+.+--+.+-|++  ..|++.-.||.+.+|-.+.
T Consensus       233 ~a~faf~p~~rn~lf-----i~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  233 CAQFAFSPHWRNILF-----ITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             HHhhhcChhhhceEE-----EEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            123567888776332     2235569999999888887777777777778887765  5799999999999997664

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.17  E-value=7.2e-08  Score=74.51  Aligned_cols=210  Identities=18%  Similarity=0.139  Sum_probs=135.2

Q ss_pred             cceEEEECC-CCCeEEEEecCC-cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-----cCCeEE
Q 022184           65 DPMTIAVNP-SGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-----VDGHLR  137 (301)
Q Consensus        65 ~v~~~~~~~-~~~~l~~~~~d~-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~  137 (301)
                      ....++.+| ....++.+-+-| ...+||..+++....+....-..+.     =.-.||+||++|++.-     ..|.|-
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFy-----GHg~fs~dG~~LytTEnd~~~g~G~Ig   80 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFY-----GHGVFSPDGRLLYTTENDYETGRGVIG   80 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEe-----cCEEEcCCCCEEEEeccccCCCcEEEE
Confidence            445788888 455666666655 5778899888765444332211111     1358999999998863     358999


Q ss_pred             EEeCC-CcceecccccCCccEEEEEecCCCcEEEEEe------------------CCCcEEEEeCCCCceEEEEee---c
Q 022184          138 IMHWP-SLRIILDEPKAHKSVLDMDFSLDSEFLATTS------------------TDGSARIWKTEDGVAWTFLTR---N  195 (301)
Q Consensus       138 v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~~~---~  195 (301)
                      |||.. +.+.+.++..+.-....+.+.|||+.|+.+-                  .+..+.+.|.++|+.+.....   .
T Consensus        81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~  160 (305)
T PF07433_consen   81 VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL  160 (305)
T ss_pred             EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence            99998 5566666666555667788999997777652                  233567778888888777442   2


Q ss_pred             CCCCeeEEEEccCCCcceEEEEEEeC---CcceEEEEEccCceEeeee-------eccCCCcEEEEEcCCCCEEEEee-C
Q 022184          196 SDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNKIGHK-------RLLRKPASVLSISLDGKYLAMGS-K  264 (301)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~-~  264 (301)
                      +...++-+++.++|.-.+ .+-..+.   .--.|.+++...  .+..+       ....+.+-++++++++.++++.+ .
T Consensus       161 ~~lSiRHLa~~~~G~V~~-a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr  237 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGTVAF-AMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR  237 (305)
T ss_pred             cccceeeEEecCCCcEEE-EEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence            334689999999987411 0000010   011233333322  12111       23346789999999998887666 4


Q ss_pred             CCcEEEEeCCCceeeccc
Q 022184          265 DGDICVVDVKKMEINHWS  282 (301)
Q Consensus       265 d~~i~i~~~~~~~~~~~~  282 (301)
                      -+.+.+||..+++.+...
T Consensus       238 Gg~~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  238 GGRVAVWDAATGRLLGSV  255 (305)
T ss_pred             CCEEEEEECCCCCEeecc
Confidence            578999999999888765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.17  E-value=2.2e-07  Score=72.11  Aligned_cols=224  Identities=15%  Similarity=0.134  Sum_probs=134.0

Q ss_pred             EEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEEC-CCCCeEEEEecCCcE
Q 022184            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN-PSGDDFVCSTTNGGC   87 (301)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~d~~i   87 (301)
                      +..|.+.  .+.++.+....+        +|+.+++.+.....       +.  ......+++. +++ .|+.+...+ +
T Consensus         4 gp~~d~~--~g~l~~~D~~~~--------~i~~~~~~~~~~~~-------~~--~~~~~G~~~~~~~g-~l~v~~~~~-~   62 (246)
T PF08450_consen    4 GPVWDPR--DGRLYWVDIPGG--------RIYRVDPDTGEVEV-------ID--LPGPNGMAFDRPDG-RLYVADSGG-I   62 (246)
T ss_dssp             EEEEETT--TTEEEEEETTTT--------EEEEEETTTTEEEE-------EE--SSSEEEEEEECTTS-EEEEEETTC-E
T ss_pred             ceEEECC--CCEEEEEEcCCC--------EEEEEECCCCeEEE-------Ee--cCCCceEEEEccCC-EEEEEEcCc-e
Confidence            4567742  245555532211        67778777654321       11  1227778887 565 555555555 6


Q ss_pred             EEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC--------CeEEEEeCCCcceecccccCCccEEE
Q 022184           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHLRIMHWPSLRIILDEPKAHKSVLD  159 (301)
Q Consensus        88 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~i~~  159 (301)
                      .++|..+++.......  ..........+.+++.|+|++.++....        |.|..++.. ++. ......-.....
T Consensus        63 ~~~d~~~g~~~~~~~~--~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNG  138 (246)
T PF08450_consen   63 AVVDPDTGKVTVLADL--PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNG  138 (246)
T ss_dssp             EEEETTTTEEEEEEEE--ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEE
T ss_pred             EEEecCCCcEEEEeec--cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccc
Confidence            6678777654222211  1111133567899999999977765533        557777766 443 223333356789


Q ss_pred             EEecCCCcEEE-EEeCCCcEEEEeCCCCce----EEEEeecCC--CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184          160 MDFSLDSEFLA-TTSTDGSARIWKTEDGVA----WTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (301)
Q Consensus       160 ~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~----~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  232 (301)
                      ++|+|+++.|+ +-+..+.|..+++.....    ...+.....  .....+++..+|+.     .++....+.|.++|.+
T Consensus       139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l-----~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL-----WVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E-----EEEEETTTEEEEEETT
T ss_pred             eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE-----EEEEcCCCEEEEECCC
Confidence            99999998665 556778899999864322    122221122  23778999999985     3444467899999988


Q ss_pred             CceEeeeeeccCCCcEEEEEc-CCCCEEEEee
Q 022184          233 TWNKIGHKRLLRKPASVLSIS-LDGKYLAMGS  263 (301)
Q Consensus       233 ~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  263 (301)
                       ++.+..+......+++++|. ++.+.|++.+
T Consensus       214 -G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  214 -GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             -ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence             77777777665689999994 6666665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.17  E-value=2.9e-09  Score=78.49  Aligned_cols=211  Identities=12%  Similarity=0.133  Sum_probs=125.8

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      |+.+.+..+    ..++.+.......+-|..+....++........+..  .+..|.++-.+-+.+-.++.++++..||.
T Consensus        39 ~~~~~~v~~----~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~--~~a~~sep~p~~~~s~~~t~V~~~~~dg~  112 (319)
T KOG4714|consen   39 LSKVSLSAE----YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFK--VLAKNSEIDPNDACTMTDNRVCIGYADGS  112 (319)
T ss_pred             EEEeechhh----heeecccchhheeeeccceEEEechhhcccCcCcee--eeeccCCCCCcccccccCCceEecCCCce
Confidence            555555544    244555544443455555655555544333222222  23344444444444556778999999999


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-----cCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-----VDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      +.+++.+.......    ..+. .+ ..-.+.++...++.+.++.     .-+..+.|+++..+....-......|.+++
T Consensus       113 ~~v~s~~~~~~~~~----~i~~-~~-~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~  186 (319)
T KOG4714|consen  113 LAVFSTDKDLALMS----RIPS-IH-SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALC  186 (319)
T ss_pred             EEEEechHHHhhhh----hccc-cc-ccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhh
Confidence            99999876322110    0110 01 1112223333455555443     234566777655443322222234599999


Q ss_pred             ecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          162 FSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       162 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      -+|..+ .+++|+.||.+.+||.+.......+...++.++..+-|+|.....    ++++++||.+.-||..+
T Consensus       187 ~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~----Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  187 SHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH----LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh----eeEecCCCcEEEEcCCC
Confidence            999544 677788999999999998866666655566789999999965432    68899999999999874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.16  E-value=7.1e-10  Score=83.80  Aligned_cols=208  Identities=13%  Similarity=0.156  Sum_probs=137.2

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc-ccccccc----c-----CCCCCCCCCeeEEEEeeCC--CEEEEe
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-DINLLAK----K-----MPPLQDAGPQKCLSFSVDG--SRFAAG  130 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~-~~~~~~~----~-----~~~~~~~~~v~~~~~s~~~--~~l~~~  130 (301)
                      .+.|+++.|...|.+|++|...|+|.+|..+.... ..++...    .     +..+.....|..+.|-.++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            56799999999999999999999999998765432 1211111    0     1122233568888887643  346677


Q ss_pred             ecCCeEEEEeCCCcce-------------------ec----------------------c-c-ccCCccEEEEEecCCCc
Q 022184          131 GVDGHLRIMHWPSLRI-------------------IL----------------------D-E-PKAHKSVLDMDFSLDSE  167 (301)
Q Consensus       131 ~~dg~i~v~d~~~~~~-------------------~~----------------------~-~-~~~~~~i~~~~~~~~~~  167 (301)
                      +.|.+|++|.+.....                   +.                      + . ..|.-.|.++.++.|.+
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            7799999998743210                   00                      0 0 12333577889998888


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEE---eecC----CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE----
Q 022184          168 FLATTSTDGSARIWKTEDGVAWTFL---TRNS----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----  236 (301)
Q Consensus       168 ~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----  236 (301)
                      .++++ .|=.|.+|++.-......+   +.+.    ...|++..|+|.....|    ..++..|.|++-|++....    
T Consensus       186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f----mYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF----MYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE----EEecCCCcEEehhhhhhhhccCc
Confidence            77765 5678999998643322222   2111    12478889999877643    4456788999999984321    


Q ss_pred             --ee----------eeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          237 --IG----------HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       237 --~~----------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                        +.          -+......|..+.|+++|+++++-+. .+|+|||++..
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence              10          01111246888999999999999876 58999999864

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.14  E-value=5.3e-11  Score=101.47  Aligned_cols=213  Identities=15%  Similarity=0.136  Sum_probs=152.3

Q ss_pred             ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC--
Q 022184           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--  134 (301)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--  134 (301)
                      ..+..|+...+|++|+-+.++|+.|+..|.|+++++.++...       .....|..+++-+.-+.||..+++.+.-.  
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-------~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-------ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-------ccccccccccccccccCCcceeeeeccccCc
Confidence            457788899999999999999999999999999999988752       23335778899999899999877765433  


Q ss_pred             eEEEEeCCC-cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC---CCCeeEEEEccCCC
Q 022184          135 HLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDGT  210 (301)
Q Consensus       135 ~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~  210 (301)
                      ...+|++.+ +.....+    ..-.++.|+..-..-+.|.......+||+.++.++.++....   ...-+...|+|+..
T Consensus      1168 lsaLW~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             hHHHhccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence            467898754 2222222    344678888765555555556778999999998877643221   12236788999998


Q ss_pred             cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCcc
Q 022184          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (301)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~  290 (301)
                      .     ++.   ||  .+||.+..+.++.+......+.. .|+|+|..++.-+.     |||+++.++++....    -.
T Consensus      1244 L-----Iln---dG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~----Ld 1303 (1516)
T KOG1832|consen 1244 L-----ILN---DG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINSE-----IWDMRTFKLLHSVPS----LD 1303 (1516)
T ss_pred             e-----Eee---Cc--eeeeeccHHHHhhhhhheecccc-cccCCCceEEeech-----hhhhHHHHHHhcCcc----cc
Confidence            5     332   33  38999988777666555433333 69999998888775     999999998887642    23


Q ss_pred             EEEEEEccCC
Q 022184          291 IALVEFCPTQ  300 (301)
Q Consensus       291 v~~~~~spdg  300 (301)
                      -..+.|+..|
T Consensus      1304 qc~VtFNstG 1313 (1516)
T KOG1832|consen 1304 QCAVTFNSTG 1313 (1516)
T ss_pred             ceEEEeccCc
Confidence            4466777665

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=5.7e-10  Score=85.33  Aligned_cols=151  Identities=9%  Similarity=0.091  Sum_probs=111.6

Q ss_pred             EEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc----eecccccCC
Q 022184           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR----IILDEPKAH  154 (301)
Q Consensus        79 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~  154 (301)
                      ++.+.+..+-+-+++++..         +.+...+.|.++.|.-.++++..|+.+|.|..+|++...    ......-|.
T Consensus       228 fs~G~sqqv~L~nvetg~~---------qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~  298 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ---------QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD  298 (425)
T ss_pred             ecccccceeEEEEeecccc---------cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC
Confidence            4445666688889888753         344456788999999889999999999999999998652    122233567


Q ss_pred             ccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCce---EEEEeecCCCC-eeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184          155 KSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (301)
Q Consensus       155 ~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (301)
                      +.|+++..-. ++++|++.+.+|+|++||++.-++   +..+.+|.... ..-+-..+....     ++++++|...++|
T Consensus       299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~-----I~s~GdDcytRiW  373 (425)
T KOG2695|consen  299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGS-----IFSVGDDCYTRIW  373 (425)
T ss_pred             cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccce-----EEEccCeeEEEEE
Confidence            7888888766 788999999999999999997666   77777664321 111223344443     6779999999999


Q ss_pred             EccCceEeeeeecc
Q 022184          230 DISTWNKIGHKRLL  243 (301)
Q Consensus       230 d~~~~~~~~~~~~~  243 (301)
                      .++.+..+.+++..
T Consensus       374 sl~~ghLl~tipf~  387 (425)
T KOG2695|consen  374 SLDSGHLLCTIPFP  387 (425)
T ss_pred             ecccCceeeccCCC
Confidence            99999888766544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=6.9e-10  Score=90.23  Aligned_cols=167  Identities=11%  Similarity=0.181  Sum_probs=124.1

Q ss_pred             CCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC-------cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEE
Q 022184          109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIW  181 (301)
Q Consensus       109 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  181 (301)
                      ..|...|+.++--.+.+.+++++.|.+|++|.++.       ..+..+...|..+|.++.|-.+.++++++  |+-|.+|
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW  809 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW  809 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence            34566777776666777899999999999999853       22455677888999999999998888876  7899999


Q ss_pred             eCCCCceEEEEe-ecCCCCeeEEEEccC-CCcceEEEEEEeCCcceEEEEEccCceEeeeeec-----cCCCcEEEEEcC
Q 022184          182 KTEDGVAWTFLT-RNSDEKIELCRFSKD-GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-----LRKPASVLSISL  254 (301)
Q Consensus       182 d~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~s~  254 (301)
                      |.--+..+..+. .+..+.+..+..-++ .+. .+  ++..+...+|+++|.+..+-....+.     .+..+++++..+
T Consensus       810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~-il--iAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRH-IL--IAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             cccccchhHhhhcCcccCCCceeEecccCcch-he--eeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            987777665442 222233445555555 333 22  34446788999999998765544433     345688999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCceeec
Q 022184          255 DGKYLAMGSKDGDICVVDVKKMEINH  280 (301)
Q Consensus       255 ~~~~l~~~~~d~~i~i~~~~~~~~~~  280 (301)
                      .|++++++-.+|.|.+.|.++|+.+.
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVIN  912 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceec
Confidence            99999999999999999999998665

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.99  E-value=5.6e-06  Score=68.66  Aligned_cols=112  Identities=19%  Similarity=0.264  Sum_probs=80.1

Q ss_pred             EEEEEecC-CCcEEEEE----eCCCc----EEEEeCCCCce--EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          157 VLDMDFSL-DSEFLATT----STDGS----ARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       157 i~~~~~~~-~~~~l~~~----~~d~~----i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      ..++.|+- +...+.+.    +.+|.    -.+|++...+.  +.....+....+.+++++|+...     ++.|+.||.
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k-----LvlGC~DgS  282 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK-----LVLGCEDGS  282 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce-----EEEEecCCe
Confidence            35667765 34455543    23443    35666654432  23333445567999999999998     789999999


Q ss_pred             EEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      |.+||...+...  .....-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus       283 iiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  283 IILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            999998776433  333445678899999999999999999999999864

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=5.8e-09  Score=82.66  Aligned_cols=211  Identities=10%  Similarity=0.043  Sum_probs=145.2

Q ss_pred             cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-CCeEEEEe
Q 022184           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMH  140 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d  140 (301)
                      |.+.|+.+... -.+++.+++.||.++.|.-..-.. ..+   ......|...+.+++.+-++.++.+.+. |..++++|
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG-vEf---VKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG-VEF---VKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccc-eee---hhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence            67777777654 467999999999999998654222 111   1122235577888888999999999887 99999999


Q ss_pred             CCCcceecccc--cCCccEEEEEecCCC-c-EEEE-EeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          141 WPSLRIILDEP--KAHKSVLDMDFSLDS-E-FLAT-TSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       141 ~~~~~~~~~~~--~~~~~i~~~~~~~~~-~-~l~~-~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      +.+...+..+.  .-.+.+. ...+|.. . .++. .-.++.+.++|-.... +...+..-+..+|..+.+.+.+..   
T Consensus        83 vEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds---  158 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS---  158 (558)
T ss_pred             eeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc---
Confidence            98765432221  1112222 2223321 1 3333 3367899999987554 444455556678999999999986   


Q ss_pred             EEEEEeCCcceEEEEEccC-ce-----E---------eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184          215 FCTVQRGDKALLAVYDIST-WN-----K---------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~-~~-----~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                        ..+....|.|..|.... .+     .         +..+...+....++.|+|++..+.+-+.|.+|++++.+++++.
T Consensus       159 --~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  159 --AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             --eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence              67777789999998763 11     1         1112223456789999999999999999999999999999887


Q ss_pred             cccc
Q 022184          280 HWSK  283 (301)
Q Consensus       280 ~~~~  283 (301)
                      +.+.
T Consensus       237 qeiD  240 (558)
T KOG0882|consen  237 QEID  240 (558)
T ss_pred             hhhh
Confidence            7653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.99  E-value=1.7e-07  Score=83.20  Aligned_cols=203  Identities=11%  Similarity=0.077  Sum_probs=134.8

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      .+.|.++.|..+...++.+..+|.|.+-|.++.....        .-.....|.+++||||...++..+.++++.+..-.
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--------vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~  139 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--------VGNVDNGISAASWSPDEELLALITGRQTLLFMTKD  139 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee--------eeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc
Confidence            4689999999999999999999999999877665311        11134789999999999999999888877665420


Q ss_pred             ----Cccee-------------------ccccc---------------------CCccEEEEEecCCCcEEEEEe----C
Q 022184          143 ----SLRII-------------------LDEPK---------------------AHKSVLDMDFSLDSEFLATTS----T  174 (301)
Q Consensus       143 ----~~~~~-------------------~~~~~---------------------~~~~i~~~~~~~~~~~l~~~~----~  174 (301)
                          ..+.+                   ..+.+                     .++.=+.|.|--||+++|+..    .
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET  219 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence                00000                   01110                     011123589999999998843    2


Q ss_pred             C-CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce---EeeeeeccCCCcEEE
Q 022184          175 D-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKRLLRKPASVL  250 (301)
Q Consensus       175 d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~v~~~  250 (301)
                      + ..|++||-+ |. +.....+..+.-.+++|-|.|..  ++.+-..+.++.|.+|..+.-+   ..-........+..+
T Consensus       220 ~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~--iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L  295 (1265)
T KOG1920|consen  220 GTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSL--IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL  295 (1265)
T ss_pred             CceeEEEeccc-ch-hhcccCcccccccceeecCCCCe--EeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence            3 789999976 33 23332233334568999999885  2333444567789999854322   111222233458999


Q ss_pred             EEcCCCCEEEE---eeCCCcEEEEeCCCce
Q 022184          251 SISLDGKYLAM---GSKDGDICVVDVKKME  277 (301)
Q Consensus       251 ~~s~~~~~l~~---~~~d~~i~i~~~~~~~  277 (301)
                      +|+.++..||+   ......|++|-+.+..
T Consensus       296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  296 AWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             eecCCCCceeeeecccccceEEEEEecCeE
Confidence            99999999998   4455569999987643

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=3.4e-09  Score=81.23  Aligned_cols=169  Identities=9%  Similarity=0.028  Sum_probs=120.2

Q ss_pred             EEee--CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-----ceEEE
Q 022184          119 SFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-----VAWTF  191 (301)
Q Consensus       119 ~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~  191 (301)
                      +|+-  .+.. ++.+.+-.+-+-|+.++-. ..+ ...+.|.++.|...++++..|..+|.|..+|++.+     .+...
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeecccc-ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            5654  2334 4444466788888887754 233 35578899999988899999999999999999864     33444


Q ss_pred             EeecCCCCeeEEEEcc-CCCcceEEEEEEeCCcceEEEEEccCceE---eeeeeccCCCcEE--EEEcCCCCEEEEeeCC
Q 022184          192 LTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKPASV--LSISLDGKYLAMGSKD  265 (301)
Q Consensus       192 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~v~~--~~~s~~~~~l~~~~~d  265 (301)
                      +.  |+..|+++..-. ++.+     +.+++.+|+|++||++--+.   +....+|-..-.-  +-..+....+++++.|
T Consensus       295 ly--h~Ssvtslq~Lq~s~q~-----LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD  367 (425)
T KOG2695|consen  295 LY--HDSSVTSLQILQFSQQK-----LMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD  367 (425)
T ss_pred             EE--cCcchhhhhhhccccce-----EeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence            44  445688887766 5665     68889999999999987666   6666666543222  3345667789999999


Q ss_pred             CcEEEEeCCCceeeccccccc--cCccEEEEEEc
Q 022184          266 GDICVVDVKKMEINHWSKRLH--LGTSIALVEFC  297 (301)
Q Consensus       266 ~~i~i~~~~~~~~~~~~~~~~--~~~~v~~~~~s  297 (301)
                      -..+||.+++++++..++-..  .+..+.+++|.
T Consensus       368 cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  368 CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             eEEEEEecccCceeeccCCCCccccccccceehh
Confidence            999999999999988764221  02245566664

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.94  E-value=8.8e-07  Score=68.36  Aligned_cols=188  Identities=19%  Similarity=0.194  Sum_probs=119.2

Q ss_pred             CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc-cc
Q 022184           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PK  152 (301)
Q Consensus        74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~  152 (301)
                      ++..+++++.++.+..||..+++...+....        ..+.... ..++..+++++.++.++.+|..+|+.+.+. ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~--------~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~  105 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP--------GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT  105 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECS--------SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecc--------cccccee-eecccccccccceeeeEecccCCcceeeeeccc
Confidence            5667777789999999999888764443321        1111111 235567777778889999999999987763 22


Q ss_pred             CC---ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCC---------eeEEEEccCCCcceEEEEEEe
Q 022184          153 AH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK---------IELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       153 ~~---~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      ..   ..........++..++.+..++.|..+|+++|+.+-.........         +..-....++ .     +...
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----v~~~  179 (238)
T PF13360_consen  106 SSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-R-----VYVS  179 (238)
T ss_dssp             SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-E-----EEEE
T ss_pred             cccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-E-----EEEE
Confidence            21   111222222237788888889999999999999988776533211         1112222233 3     4555


Q ss_pred             CCcce-EEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeec
Q 022184          221 GDKAL-LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (301)
Q Consensus       221 ~~~~~-i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~  280 (301)
                      ..++. +.+ |+.+++.+-...  ...+.. ...+++..|++++.++.|..||+++++..-
T Consensus       180 ~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  180 SGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             CCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             cCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            55664 555 999998663222  222222 145677888888899999999999998753

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.94  E-value=4.8e-07  Score=74.92  Aligned_cols=183  Identities=12%  Similarity=0.044  Sum_probs=110.2

Q ss_pred             CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCcceecccccC
Q 022184           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (301)
Q Consensus        76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  153 (301)
                      ..++.+..++.+..+|.++++.....................+.-+|  .+..+++++.+|.++.+|..+++.+..... 
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-  269 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-  269 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-
Confidence            36677777888999998877653322110000000000000011111  355788888899999999999987655431 


Q ss_pred             CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                       .....+.  .++..++.++.||.+..+|..+++.+-...............  .+..     ++.++.+|.|.++|..+
T Consensus       270 -~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~-----l~~~~~~G~l~~~d~~t  339 (377)
T TIGR03300       270 -SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGY-----LVVGDFEGYLHWLSRED  339 (377)
T ss_pred             -CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCE-----EEEEeCCCEEEEEECCC
Confidence             1111222  246678888899999999999998765542211111222222  2444     56778899999999999


Q ss_pred             ceEeeeeeccCCCcE-EEEEcCCCCEEEEeeCCCcEEEE
Q 022184          234 WNKIGHKRLLRKPAS-VLSISLDGKYLAMGSKDGDICVV  271 (301)
Q Consensus       234 ~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~i~  271 (301)
                      ++.+.....+...+. ...+. + ..|+.++.||.|+.|
T Consensus       340 G~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       340 GSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             CCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            998877766554322 22332 3 358888899998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.94  E-value=2.3e-07  Score=76.73  Aligned_cols=191  Identities=19%  Similarity=0.182  Sum_probs=117.7

Q ss_pred             ccccCCcceEEEECCCCCeEEEEec---C-CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cC
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTT---N-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD  133 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~---d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d  133 (301)
                      +......+..-+|+|+++.++....   . ..+.++++..++......        ..+.-...+|+|||+.|+.+. .|
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------~~g~~~~P~fspDG~~l~f~~~rd  259 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------FNGNNGAPAFSPDGSKLAFSSSRD  259 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------cCCccCCccCCCCCCEEEEEECCC
Confidence            3334566888899999998775532   2 458899998877533222        223345579999999887654 45


Q ss_pred             C--eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccC
Q 022184          134 G--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (301)
Q Consensus       134 g--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (301)
                      |  .|+++|+..++. .++....+.-..-.|+|||+.++..+. .|  .|.+++++.+.. ..+...... -..-.|+||
T Consensus       260 g~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-~~~p~~Spd  336 (425)
T COG0823         260 GSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-NSNPVWSPD  336 (425)
T ss_pred             CCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-CcCccCCCC
Confidence            5  466667776663 334444444447789999998887663 44  466667766554 334333222 237789999


Q ss_pred             CCcceEEEEEEeCCcc--eEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC
Q 022184          209 GTKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD  265 (301)
Q Consensus       209 ~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  265 (301)
                      |+++.+    ....+|  .|.+.|+.++...+.+ ..........|.|+++.+...+..
T Consensus       337 G~~i~~----~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         337 GDKIVF----ESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CCEEEE----EeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEeccC
Confidence            998422    222233  3777777665533222 223334456788898877766543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.93  E-value=2.6e-08  Score=85.66  Aligned_cols=183  Identities=14%  Similarity=0.131  Sum_probs=130.8

Q ss_pred             CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC
Q 022184           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (301)
Q Consensus        74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  153 (301)
                      ++..++-|+-...+..+|+.+.+......      . ..+.+.-+..  +++.+.+|...|+|.+-|.++.+.+.++..|
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~------v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH  216 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN------V-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAH  216 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeee------c-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecc
Confidence            34566677666777788877655311110      0 1123444443  6789999999999999999999999999999


Q ss_pred             CccEEEEEecCCCcEEEEEeC---------CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc
Q 022184          154 HKSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (301)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  224 (301)
                      .+.|.++..  .|+.|++++.         |..|+|||+|..+.+..+..+.+  ..-+.|.|.-...    ++..+..|
T Consensus       217 s~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~----~~V~S~sG  288 (1118)
T KOG1275|consen  217 SGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTR----LAVTSQSG  288 (1118)
T ss_pred             ccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccce----EEEEeccc
Confidence            999987665  4889999875         45689999999887776654433  4567788865432    46667778


Q ss_pred             eEEEEEccCce-E---eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          225 LLAVYDISTWN-K---IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       225 ~i~~~d~~~~~-~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                      +..+-|..+.. +   +..+......+..+++|+++..|+.|..+|.|.+|.-
T Consensus       289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            88888833221 1   2223333455899999999999999999999999983

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.92  E-value=5.7e-09  Score=55.50  Aligned_cols=39  Identities=33%  Similarity=0.360  Sum_probs=36.3

Q ss_pred             ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      ++++..+..|...|++++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356778999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=7.7e-08  Score=75.40  Aligned_cols=81  Identities=9%  Similarity=0.034  Sum_probs=64.6

Q ss_pred             cccccCCcceEEEECCCCC-eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC-CEEEEeecCCe
Q 022184           58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGH  135 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~  135 (301)
                      .+.+|...|..++|+|..+ ++..++.+.+|+|.|+++.....        .......+.+++|.-|. .+|..|..+|.
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs--------sy~a~~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS--------SYIAYNQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee--------heeccCCceeeeeccCCcceeEEeccCce
Confidence            4677888999999999877 77888999999999999876522        22233788999998854 56777888999


Q ss_pred             EEEEeCCCcce
Q 022184          136 LRIMHWPSLRI  146 (301)
Q Consensus       136 i~v~d~~~~~~  146 (301)
                      |.+||++..+.
T Consensus       260 VlvyD~R~~~~  270 (463)
T KOG1645|consen  260 VLVYDMRQPEG  270 (463)
T ss_pred             EEEEEccCCCc
Confidence            99999986543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.91  E-value=1.4e-06  Score=72.21  Aligned_cols=193  Identities=13%  Similarity=0.108  Sum_probs=117.4

Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  154 (301)
                      +..++.++.++.+..+|.++++...+...... ....... .....  .+..++.+..++.+..+|.++++.+.......
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~-~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~  220 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALTLRGS-ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL  220 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCC-ceeecCC-CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence            45677777889999999988876444322110 0000000 11111  12467788888999999999887654332110


Q ss_pred             ----c---cEEEEEecC--CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          155 ----K---SVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       155 ----~---~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                          .   ....+.-+|  .+..++.++.++.+..+|.++++.+-.....  . .....  .++..     ++..+.++.
T Consensus       221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~-~~~p~--~~~~~-----vyv~~~~G~  290 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--S-YQGPA--VDDNR-----LYVTDADGV  290 (377)
T ss_pred             CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--C-ccCce--EeCCE-----EEEECCCCe
Confidence                0   001111112  3557777888999999999999876555421  1 11222  23444     455678999


Q ss_pred             EEEEEccCceEeeeeeccC-CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          226 LAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      +..+|..+++.+-...... ........  .+..|++++.+|.|+++|..+++.+....
T Consensus       291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       291 VVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             EEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            9999999988764442211 22222222  46689999999999999999998876653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=1.6e-07  Score=79.95  Aligned_cols=180  Identities=12%  Similarity=0.205  Sum_probs=120.6

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      ++|++++..     ++++|+..+      .+.++..+.+..          ....|...      ..+|.++++|+.||+
T Consensus        42 is~~av~~~-----~~~~GtH~g------~v~~~~~~~~~~----------~~~~~s~~------~~~Gey~asCS~DGk   94 (846)
T KOG2066|consen   42 ISCCAVHDK-----FFALGTHRG------AVYLTTCQGNPK----------TNFDHSSS------ILEGEYVASCSDDGK   94 (846)
T ss_pred             HHHHHhhcc-----eeeeccccc------eEEEEecCCccc----------cccccccc------ccCCceEEEecCCCc
Confidence            566777743     888988544      335555543321          01122222      668999999999999


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-----CCEEEEeecCCeEEEEeCC--CcceecccccCCccEEE
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-----GSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSVLD  159 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~i~~  159 (301)
                      |.|..+-+.+.        .....-..++.+++++|+     .+.+++|+..| +.++.-+  ..+....+....++|.+
T Consensus        95 v~I~sl~~~~~--------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~  165 (846)
T KOG2066|consen   95 VVIGSLFTDDE--------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHS  165 (846)
T ss_pred             EEEeeccCCcc--------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEE
Confidence            99999877764        222334578899999997     56799999888 7776532  11111124445679999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC-----CeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-----KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  232 (301)
                      +.|.  |+++|-++.+| |++||+.+++.+..+..++..     ....+.|.++.+      ++.| ...+|++..++
T Consensus       166 i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~------LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  166 IKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR------LVIG-WGDSVKICSIK  233 (846)
T ss_pred             EEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe------EEEe-cCCeEEEEEEe
Confidence            9997  78888887655 799999999888877654422     234577877776      3443 34468887776

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=3e-07  Score=78.13  Aligned_cols=221  Identities=11%  Similarity=0.106  Sum_probs=145.3

Q ss_pred             cceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC------------CEEEEeec
Q 022184           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG------------SRFAAGGV  132 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~  132 (301)
                      .-.++.|+|.| .||.|+.. .|.+-|..+-+....       ...|...|+.+.|.|..            -.|+++.-
T Consensus        17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqs-------ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~   87 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQS-------IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI   87 (1062)
T ss_pred             cccccccCccc-eEEEecCc-eEEEEehhhhhhhhc-------cccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence            36788999987 67776554 488888876654211       12356889999997731            14667777


Q ss_pred             CCeEEEEeCCCcceecccccCCccEEEEEecC---CC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccC
Q 022184          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL---DS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (301)
Q Consensus       133 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (301)
                      .|.|.+||...+..+..+..+.+++..++|-|   +. ..|+.-....++.+|+..+|+..-.....+. ...++.+.|-
T Consensus        88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DPf  166 (1062)
T KOG1912|consen   88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDPF  166 (1062)
T ss_pred             cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCCC
Confidence            89999999999888888888888999999976   34 4677777778999999999998776654443 5677888885


Q ss_pred             CCcceEEEEEEeCCcceEEEEEccC-------ceEeeeeeccCC-----------------C--------cEEEEEcCCC
Q 022184          209 GTKPFLFCTVQRGDKALLAVYDIST-------WNKIGHKRLLRK-----------------P--------ASVLSISLDG  256 (301)
Q Consensus       209 ~~~~~~~~~~~~~~~~~i~~~d~~~-------~~~~~~~~~~~~-----------------~--------v~~~~~s~~~  256 (301)
                      ....    +..-+..|.+.+-+.-.       ++..+....|..                 +        ...++|+|.-
T Consensus       167 d~rh----~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~  242 (1062)
T KOG1912|consen  167 DSRH----FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW  242 (1062)
T ss_pred             Ccce----EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence            5442    23334455555554321       111111111100                 0        1235778987


Q ss_pred             CEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          257 KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       257 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +.++.......+.++|++-...+..+ ... .+.+.=+.|-||++
T Consensus       243 rn~lfi~~prellv~dle~~~~l~vv-pie-r~~akfv~vlP~~~  285 (1062)
T KOG1912|consen  243 RNILFITFPRELLVFDLEYECCLAVV-PIE-RGGAKFVDVLPDPR  285 (1062)
T ss_pred             hceEEEEeccceEEEcchhhceeEEE-Eec-cCCcceeEeccCCC
Confidence            77777777788999999876666554 222 44455566666653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.89  E-value=1.1e-05  Score=62.79  Aligned_cols=233  Identities=15%  Similarity=0.133  Sum_probs=139.4

Q ss_pred             EEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee--CCceeccccccCCcceEEEECCCCCeEEEEec--
Q 022184            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT--   83 (301)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--   83 (301)
                      ..++.+|  .....++++..-+.       ..+.+|..+.....  .+.....|.+|      -.||+||++|++.-.  
T Consensus         8 H~~a~~p--~~~~avafaRRPG~-------~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~   72 (305)
T PF07433_consen    8 HGVAAHP--TRPEAVAFARRPGT-------FALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDY   72 (305)
T ss_pred             cceeeCC--CCCeEEEEEeCCCc-------EEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEecccc
Confidence            3455564  23566676654332       24445544433321  22223344555      679999999998743  


Q ss_pred             ---CCcEEEEEEcCC-ccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee------------------cCCeEEEEeC
Q 022184           84 ---NGGCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------------------VDGHLRIMHW  141 (301)
Q Consensus        84 ---d~~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------------~dg~i~v~d~  141 (301)
                         .|.|-|||.... +....+.       .+.-....+.+.|||+.|+++.                  .+-++...|.
T Consensus        73 ~~g~G~IgVyd~~~~~~ri~E~~-------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~  145 (305)
T PF07433_consen   73 ETGRGVIGVYDAARGYRRIGEFP-------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA  145 (305)
T ss_pred             CCCcEEEEEEECcCCcEEEeEec-------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence               489999999833 2211111       1223346688999998888763                  1234556677


Q ss_pred             CCcceecc--c--ccCCccEEEEEecCCCcEEEEEeCCCc-------EEEEeCCCCceEEEEeec------CCCCeeEEE
Q 022184          142 PSLRIILD--E--PKAHKSVLDMDFSLDSEFLATTSTDGS-------ARIWKTEDGVAWTFLTRN------SDEKIELCR  204 (301)
Q Consensus       142 ~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~d~~-------i~i~d~~~~~~~~~~~~~------~~~~v~~~~  204 (301)
                      .+|+.+.+  +  ..|+..|..+++.++|..++..-..|.       +-+++  .++.+..+...      -...+-+++
T Consensus       146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa  223 (305)
T PF07433_consen  146 RSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIA  223 (305)
T ss_pred             CCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEE
Confidence            77876655  3  225568999999999876655433332       33333  33333333221      124588999


Q ss_pred             EccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      +++++..+    ++++-..+.+.+||..+++.+.....  ..+..++-.+++ ++++.+ .|.+....
T Consensus       224 ~~~~g~~i----a~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG-~G~~~~~~  283 (305)
T PF07433_consen  224 ADRDGRLI----AVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSG-QGQLIRLS  283 (305)
T ss_pred             EeCCCCEE----EEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCC-CccEEEcc
Confidence            99999862    57777889999999999988765543  345667766666 555544 45544433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.89  E-value=6.4e-09  Score=55.29  Aligned_cols=38  Identities=29%  Similarity=0.546  Sum_probs=35.3

Q ss_pred             ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEe
Q 022184          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK  182 (301)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  182 (301)
                      +++..+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56677888999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.89  E-value=6.8e-06  Score=67.28  Aligned_cols=231  Identities=15%  Similarity=0.129  Sum_probs=129.6

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCC-CC----------CCCCeeEEEEeeCCCEEEEee
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-LQ----------DAGPQKCLSFSVDGSRFAAGG  131 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~-~~----------~~~~v~~~~~s~~~~~l~~~~  131 (301)
                      ...+....|+|+|+.++... ++.|.+++..++.. .++....... ..          --+.-..+.||||+++|+...
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCe-EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            56789999999999999874 56799998766532 1111110000 00          012336789999999988653


Q ss_pred             cC-C-----------------------------------eEEEEeCCCcceec-cc----ccCCccEEEEEecCCCcEEE
Q 022184          132 VD-G-----------------------------------HLRIMHWPSLRIIL-DE----PKAHKSVLDMDFSLDSEFLA  170 (301)
Q Consensus       132 ~d-g-----------------------------------~i~v~d~~~~~~~~-~~----~~~~~~i~~~~~~~~~~~l~  170 (301)
                      .| .                                   .+.|+|+.+++... ..    ......+..+.|.++++.|+
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence            22 1                                   13345555444311 11    12234688999999998444


Q ss_pred             EE--eCCC---cEEEEeCCCCceEEEEeecCCCCe---eEEEEc-cCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          171 TT--STDG---SARIWKTEDGVAWTFLTRNSDEKI---ELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       171 ~~--~~d~---~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      ..  .++.   .+.+.|..++.............+   ....|. +++..+ +. +.....-..|.+++...+... .+.
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~-l~-~s~~~G~~hly~~~~~~~~~~-~lT  276 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEF-LW-ISERDGYRHLYLYDLDGGKPR-QLT  276 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEE-EE-EEETTSSEEEEEEETTSSEEE-ESS
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEE-EE-EEEcCCCcEEEEEccccccee-ccc
Confidence            43  3333   367778877766555544443333   355555 777763 22 223334456777787776643 444


Q ss_pred             ccCCCcEE-EEEcCCCCEEE-EeeC----CCcEEEEeCC-CceeeccccccccCccEEEEEEccCCC
Q 022184          242 LLRKPASV-LSISLDGKYLA-MGSK----DGDICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       242 ~~~~~v~~-~~~s~~~~~l~-~~~~----d~~i~i~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ...-.|.. +.|+++++.|+ ++..    ...|+.-++. .++.......   ...-..+.|||||+
T Consensus       277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~---~~~~~~~~~Spdg~  340 (353)
T PF00930_consen  277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE---DGDHYSASFSPDGK  340 (353)
T ss_dssp             -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT---SSTTEEEEE-TTSS
T ss_pred             cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC---CCCceEEEECCCCC
Confidence            44556644 77888877655 4433    2357777777 6665554422   12226999999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.86  E-value=1.7e-08  Score=74.54  Aligned_cols=148  Identities=10%  Similarity=0.060  Sum_probs=100.9

Q ss_pred             CCCEEEEeecCCeEEEEeCCCccee-cccccCCccEEEEEecCCCcEEEEEeC-----CCcEEEEeCCCCceEEEEeecC
Q 022184          123 DGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTEDGVAWTFLTRNS  196 (301)
Q Consensus       123 ~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~  196 (301)
                      .++.++++..||.+.+++.+.-..+ .+....+..-.+.+....++.+.++.-     -+..+.|+++..+....-....
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            4667999999999999987652111 111111222233334445555555432     2346677766544332222222


Q ss_pred             CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-EeeeeeccCCCcEEEEEcC-CCCEEEEeeCCCcEEEEeCC
Q 022184          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~  274 (301)
                      . .+.+++-+|..+++    ++.+++||.+.+||.++.. +...++.|+.+++.+-|+| ++..|+++++||.+.-||..
T Consensus       180 ~-~v~~l~~hp~qq~~----v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  180 D-AVTALCSHPAQQHL----VCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             c-cchhhhCCcccccE----EEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            2 38899999988874    6788999999999998864 3456788999999999999 57899999999999999987


Q ss_pred             C
Q 022184          275 K  275 (301)
Q Consensus       275 ~  275 (301)
                      +
T Consensus       255 ~  255 (319)
T KOG4714|consen  255 T  255 (319)
T ss_pred             C
Confidence            4

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=1.6e-07  Score=74.78  Aligned_cols=232  Identities=13%  Similarity=0.057  Sum_probs=154.5

Q ss_pred             CcCceeEeeeCC-CcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-CCcEEEEEEcCCccccccccccCCCCC
Q 022184           33 SPSVLEIFSFDP-KTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQ  110 (301)
Q Consensus        33 ~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~  110 (301)
                      .|+.++.|.-.. .+..      ....+..|...|.+++.+-++..+.+.+. |..++++|+++-....-+.   +..+ 
T Consensus        28 lDGh~KFWkKs~isGvE------fVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK---L~~l-   97 (558)
T KOG0882|consen   28 LDGHKKFWKKSRISGVE------FVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK---LVDL-   97 (558)
T ss_pred             cchhhhhcCCCCcccee------ehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc---cccC-
Confidence            666667775544 2222      23457788999999999999999999777 9999999998765421111   1111 


Q ss_pred             CCCCeeEEEEeeC-C-CEEEEe-ecCCeEEEEeCCCcc--eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 022184          111 DAGPQKCLSFSVD-G-SRFAAG-GVDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (301)
Q Consensus       111 ~~~~v~~~~~s~~-~-~~l~~~-~~dg~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  185 (301)
                        ....+...+|. . ..|+++ -.++.+.++|-....  ......-|..+|..+.++|-+..+++....|.|..|....
T Consensus        98 --Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~  175 (558)
T KOG0882|consen   98 --PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG  175 (558)
T ss_pred             --CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence              11112222331 1 133333 357899999965432  2333345668999999999999999999999999998863


Q ss_pred             ------CceEEEEee--------cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec---------
Q 022184          186 ------GVAWTFLTR--------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL---------  242 (301)
Q Consensus       186 ------~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---------  242 (301)
                            .+....++.        .......++.|+|++..     +.+-+.|..|++++.++++.++.+..         
T Consensus       176 ~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-----istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~  250 (558)
T KOG0882|consen  176 PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-----ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQP  250 (558)
T ss_pred             cccCccccccccccccchhhcccccccCccceEEccccCc-----ccccCcccEEEEEEeccchhhhhhhccchhhhhcc
Confidence                  111111110        11234789999999998     67777999999999988765322211         


Q ss_pred             -----------------------cC-CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          243 -----------------------LR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       243 -----------------------~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                                             ++ ..-+.+.|...|++|+.++.=| |++.++.++...+.+
T Consensus       251 ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  251 KSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             ccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence                                   11 1234578999999999998765 899999988777654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=1.5e-06  Score=74.84  Aligned_cols=205  Identities=13%  Similarity=0.036  Sum_probs=128.1

Q ss_pred             EEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC-----eEEEEeCCC
Q 022184           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPS  143 (301)
Q Consensus        69 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~v~d~~~  143 (301)
                      -+|++++..++.|+.+|.|.+.+-.-... .     ..+...+ +.+..+....+.++|++.++|+     .+++|+++.
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~~-~-----~fqa~~~-siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSSFQLI-R-----GFQAYEQ-SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecccceee-e-----hheecch-hhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence            34678888999999999887776432210 0     0111111 1233333333446777777664     589999864


Q ss_pred             cc------ee--ccccc-----CCccEEEEEecCCCcEEEEEeCCCcEEEEeC---CCCceEEEEeecCCCCeeEEEEcc
Q 022184          144 LR------II--LDEPK-----AHKSVLDMDFSLDSEFLATTSTDGSARIWKT---EDGVAWTFLTRNSDEKIELCRFSK  207 (301)
Q Consensus       144 ~~------~~--~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~~~v~~~~~~~  207 (301)
                      .+      +.  ..+..     ...++.+++.+.+-+.+|.|-.+|.|..+.-   |.......+......+|+.+++..
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS  181 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence            31      11  01111     2357889999999889999999999998852   222223344444567899999999


Q ss_pred             CCCcceEEEEEEeCCcceEEEEEccCceE-eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184          208 DGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (301)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~  286 (301)
                      ++... ++ +++   ..+|.+|.+....+ ...+..++.++.|-.+++....+++++. ..+.+|+.+...+...+..+|
T Consensus       182 d~~s~-lF-v~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~  255 (933)
T KOG2114|consen  182 DGKSV-LF-VAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGE  255 (933)
T ss_pred             CCcee-EE-EEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCC
Confidence            99863 11 222   34699999885442 3335667778888888876554555543 469999987655554443343

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.80  E-value=7e-06  Score=73.41  Aligned_cols=204  Identities=12%  Similarity=0.127  Sum_probs=115.5

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEc----CCccc----------cc-cccccCCCCC-----------------
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY----GGATD----------IN-LLAKKMPPLQ-----------------  110 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~----~~~~~----------~~-~~~~~~~~~~-----------------  110 (301)
                      ...|.+++|+||++.++..+..+++.+..-.    ..+..          .. -+.+....+.                 
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence            6789999999999999988887777665431    00000          00 0000000000                 


Q ss_pred             -----CCCCeeEEEEeeCCCEEEEee----cC-CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEe---CCCc
Q 022184          111 -----DAGPQKCLSFSVDGSRFAAGG----VD-GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TDGS  177 (301)
Q Consensus       111 -----~~~~v~~~~~s~~~~~l~~~~----~d-g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~  177 (301)
                           -...=..+.|--||.++++..    .+ ..|+|||-+ |..-..-....+.-.+++|-|.|..+++-.   .|+.
T Consensus       189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~  267 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD  267 (1265)
T ss_pred             ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc
Confidence                 111224589999999998842    23 789999976 443222222233456899999999988854   4557


Q ss_pred             EEEEeCCCCceEEEE--eecCCC-CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe--eeeeccCCCcEEEEE
Q 022184          178 ARIWKTEDGVAWTFL--TRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI--GHKRLLRKPASVLSI  252 (301)
Q Consensus       178 i~i~d~~~~~~~~~~--~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~v~~~~~  252 (301)
                      |.+|.-+ |-.-..+  ..+.+. .+..++|+.++..+  +..........|.+|-+.+..-.  ..+...+...  +.|
T Consensus       268 IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiL--Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W  342 (1265)
T KOG1920|consen  268 IVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDIL--AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMW  342 (1265)
T ss_pred             EEEEecC-CccccccccCCcccccchheeeecCCCCce--eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccc
Confidence            8888743 3222222  111222 38999999999962  22223455556999998775422  2222222222  677


Q ss_pred             cCCC-CEEEEeeCCCcEEEEe
Q 022184          253 SLDG-KYLAMGSKDGDICVVD  272 (301)
Q Consensus       253 s~~~-~~l~~~~~d~~i~i~~  272 (301)
                      +|.. ..|.+-..+|...+++
T Consensus       343 ~p~~~~~L~v~~~sG~~~v~~  363 (1265)
T KOG1920|consen  343 DPVTEKTLHVLRESGQRLVRD  363 (1265)
T ss_pred             cCCCceeEEEEecCCcEEEEE
Confidence            7732 2233333455544444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=7.1e-06  Score=67.72  Aligned_cols=207  Identities=12%  Similarity=0.124  Sum_probs=143.5

Q ss_pred             CcceEEEECCCCCeEEEE-ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec---CCeEEEE
Q 022184           64 GDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIM  139 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~v~  139 (301)
                      .....++.++.+..+... ..++.|.+.|...........        .......++++|+++.+.++..   ++.+.+.
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--------vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvi  145 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--------VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVI  145 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee--------eccCCceEEECCCCCEEEEEecccCCceEEEE
Confidence            345577888888855544 445889999966554422111        1125578999999988877765   6889999


Q ss_pred             eCCCcceecccccCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCceEEEEe----ecCCCCeeEEEEccCCCcceE
Q 022184          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      |-.+.+..........+ ..++++|+|+.++... .++.+.+.|........ -.    .........+.++|+|.+.++
T Consensus       146 d~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV  223 (381)
T COG3391         146 DAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYV  223 (381)
T ss_pred             eCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEE
Confidence            98888877765544445 8999999999666555 78899999977665553 11    112223578899999997543


Q ss_pred             EEEEEeCCcceEEEEEccCceEeeeeeccCC-CcEEEEEcCCCCEEEEeeCC-CcEEEEeCCCceeeccc
Q 022184          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSKD-GDICVVDVKKMEINHWS  282 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d-~~i~i~~~~~~~~~~~~  282 (301)
                        ....+.++.+...|..++........... ....+..+|+|+.+.+.... +.+.+.|..+.......
T Consensus       224 --~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~  291 (381)
T COG3391         224 --ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG  291 (381)
T ss_pred             --EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence              23333357999999998776654222222 45678999999999988544 88999999887766654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.78  E-value=1.8e-07  Score=77.18  Aligned_cols=118  Identities=12%  Similarity=0.148  Sum_probs=81.7

Q ss_pred             CcceEEEECC-CCCeEEEE----ecCCc----EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           64 GDPMTIAVNP-SGDDFVCS----TTNGG----CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        64 ~~v~~~~~~~-~~~~l~~~----~~d~~----i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ....++.|+. +...+.+.    +.+|.    -.+|++..++.. .   .....+.....+.+++++|+.+.++.|+.||
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-r---vsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg  281 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-R---VSVTSIPLPSQVICCARSPSEDKLVLGCEDG  281 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-E---EEEEEEecCCcceEEecCcccceEEEEecCC
Confidence            3456777776 33344433    23332    345666544321 1   1123344667899999999999999999999


Q ss_pred             eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 022184          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV  187 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  187 (301)
                      +|.+||...+...  .....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       282 SiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  282 SIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             eEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            9999998765432  22333457889999999999999999999999986543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.76  E-value=2.4e-06  Score=69.88  Aligned_cols=217  Identities=15%  Similarity=0.110  Sum_probs=118.2

Q ss_pred             CCCCCeEEEEe---------cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           72 NPSGDDFVCST---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        72 ~~~~~~l~~~~---------~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      |||+++++...         ..+.+.++|+++++......        ....+....|||+|+.++... ++.|.+.+..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~--------~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~   71 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP--------PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA   71 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---------EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC--------CccccccceeecCCCeeEEEe-cCceEEEECC
Confidence            57888777642         34678999998865421111        145678899999999999887 6789999987


Q ss_pred             CcceecccccC-----------------CccEEEEEecCCCcEEEEEeCC-Cc---------------------------
Q 022184          143 SLRIILDEPKA-----------------HKSVLDMDFSLDSEFLATTSTD-GS---------------------------  177 (301)
Q Consensus       143 ~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~d-~~---------------------------  177 (301)
                      +++..+.....                 -+.-..+-|+||+++|+....| ..                           
T Consensus        72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~  151 (353)
T PF00930_consen   72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA  151 (353)
T ss_dssp             TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT
T ss_pred             CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC
Confidence            66543222111                 1122467899999998876432 22                           


Q ss_pred             --------EEEEeCCCCceEE-EEe---ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee-ccC
Q 022184          178 --------ARIWKTEDGVAWT-FLT---RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLR  244 (301)
Q Consensus       178 --------i~i~d~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~  244 (301)
                              +.++|+.+++... ...   ......+..+.|.+++..+++..+--......+.++|..++....... ...
T Consensus       152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~  231 (353)
T PF00930_consen  152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD  231 (353)
T ss_dssp             TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred             CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence                    2334444333211 111   112334678899999885443332223334556677876654322222 122


Q ss_pred             C---CcEEEEEc-CCCC-EEEEeeCCC--cEEEEeCCCceeeccccccccCccEEE-EEEccCC
Q 022184          245 K---PASVLSIS-LDGK-YLAMGSKDG--DICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQ  300 (301)
Q Consensus       245 ~---~v~~~~~s-~~~~-~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~v~~-~~~spdg  300 (301)
                      .   .-....|. +++. ++.....+|  .|.+++...+...... .+  .-.|.. +.|++++
T Consensus       232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT-~G--~~~V~~i~~~d~~~  292 (353)
T PF00930_consen  232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT-SG--DWEVTSILGWDEDN  292 (353)
T ss_dssp             SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS--S--SS-EEEEEEEECTS
T ss_pred             cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc-cC--ceeecccceEcCCC
Confidence            2   22355554 6554 455555666  4666777777655433 22  345644 6666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=5.5e-07  Score=76.74  Aligned_cols=151  Identities=17%  Similarity=0.148  Sum_probs=111.6

Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL  192 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  192 (301)
                      ..++|++++  +++|+.|+.+|.|++++... .. .+...|...      .-+|.++++|+.||+|.|-.+-+.+...++
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            456677775  67899999999999998653 33 333333322      568999999999999999999888877777


Q ss_pred             eecCCCCeeEEEEccC-----CCcceEEEEEEeCCcceEEEEEccC---ceEeeeeeccCCCcEEEEEcCCCCEEEEeeC
Q 022184          193 TRNSDEKIELCRFSKD-----GTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLRKPASVLSISLDGKYLAMGSK  264 (301)
Q Consensus       193 ~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  264 (301)
                      ..+  .++.+++++|+     .+.     .++|+..| +.++..+-   ...+ ......++|.++.|.  |.++|-++.
T Consensus       110 df~--rpiksial~Pd~~~~~sk~-----fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  110 DFK--RPIKSIALHPDFSRQQSKQ-----FVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             ecC--CcceeEEeccchhhhhhhh-----eeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecC
Confidence            643  46999999998     233     57788877 77776432   1122 345556899999995  779999987


Q ss_pred             CCcEEEEeCCCceeecccccc
Q 022184          265 DGDICVVDVKKMEINHWSKRL  285 (301)
Q Consensus       265 d~~i~i~~~~~~~~~~~~~~~  285 (301)
                      +| |++||+.+.+.+..++..
T Consensus       179 ~G-v~vyd~~~~~~l~~i~~p  198 (846)
T KOG2066|consen  179 DG-VKVYDTPTRQRLTNIPPP  198 (846)
T ss_pred             CC-cEEEeccccceeeccCCC
Confidence            76 999999998877766543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.73  E-value=2.8e-05  Score=61.21  Aligned_cols=233  Identities=14%  Similarity=0.196  Sum_probs=124.9

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe----------cCCcEEEEEEcCCccccccccccCC
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMP  107 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~~w~~~~~~~~~~~~~~~~~  107 (301)
                      +++.+|.+..++.-.      +.  .+-.-.+..+|+++.+++++          +.-.|.+||.++......+.....+
T Consensus        18 rv~viD~d~~k~lGm------i~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~   89 (342)
T PF06433_consen   18 RVYVIDADSGKLLGM------ID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP   89 (342)
T ss_dssp             EEEEEETTTTEEEEE------EE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred             eEEEEECCCCcEEEE------ee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence            677777766555321      11  22334477899999888753          3457999999887654433222111


Q ss_pred             CCCCCCCeeEEEEeeCCCEEEEeec--CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC-
Q 022184          108 PLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-  184 (301)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-  184 (301)
                      ..........++++.|++++++...  ...|.|.|+...+.+..+... + +..+--.++ +.|.+.+.||.+.-..+. 
T Consensus        90 R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~  166 (342)
T PF06433_consen   90 RAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSGN-RGFSMLCGDGSLLTVTLDA  166 (342)
T ss_dssp             B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEET-TEEEEEETTSCEEEEEETS
T ss_pred             hheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecCC-CceEEEecCCceEEEEECC
Confidence            1111123455688999998887643  467888888877765443211 1 111111111 224444444544444443 


Q ss_pred             CCceEEEE-------------------------------------------------eecC---------CCCeeEEEEc
Q 022184          185 DGVAWTFL-------------------------------------------------TRNS---------DEKIELCRFS  206 (301)
Q Consensus       185 ~~~~~~~~-------------------------------------------------~~~~---------~~~v~~~~~~  206 (301)
                      .|+.....                                                 ..-.         ++.-.-++++
T Consensus       167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~  246 (342)
T PF06433_consen  167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYH  246 (342)
T ss_dssp             TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred             CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeec
Confidence            22221110                                                 0000         0012235566


Q ss_pred             cCCCcceEEEEEEeCCc-------ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCC-EEEEe-eCCCcEEEEeCCCce
Q 022184          207 KDGTKPFLFCTVQRGDK-------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLAMG-SKDGDICVVDVKKME  277 (301)
Q Consensus       207 ~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~d~~i~i~~~~~~~  277 (301)
                      +..+++|++  .-.+.+       ..|.++|+.+++.+..+.. +.++.+++.+.+.+ +|++. ..++.+.+||..+++
T Consensus       247 ~~~~rlyvL--Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  247 AASGRLYVL--MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             TTTTEEEEE--EEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             cccCeEEEE--ecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            655554542  222222       3588899999998877765 34577899998765 55544 457899999999999


Q ss_pred             eeccccc
Q 022184          278 INHWSKR  284 (301)
Q Consensus       278 ~~~~~~~  284 (301)
                      +++.+..
T Consensus       324 ~~~~~~~  330 (342)
T PF06433_consen  324 LVRSIEQ  330 (342)
T ss_dssp             EEEEE--
T ss_pred             EEeehhc
Confidence            9887754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=1.6e-08  Score=86.89  Aligned_cols=214  Identities=13%  Similarity=0.145  Sum_probs=144.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ....-+|++|+-+   .+.+++|.      ..|.++++..+....        +.....|..+|+-+.-+.+|..+++.+
T Consensus      1100 ~~~~fTc~afs~~---~~hL~vG~------~~Geik~~nv~sG~~--------e~s~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGG---TNHLAVGS------HAGEIKIFNVSSGSM--------EESVNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred             cccceeeEEeecC---CceEEeee------ccceEEEEEccCccc--------cccccccccccccccccCCcceeeeec
Confidence            3456789999977   67999988      445568887765432        334678999999999999999777654


Q ss_pred             cC--CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC----cc
Q 022184           83 TN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH----KS  156 (301)
Q Consensus        83 ~d--~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----~~  156 (301)
                      .-  .-..+|+.......       ..   .-..-.++.|+.....-+.|+......+||+.++....++....    -.
T Consensus      1163 s~S~PlsaLW~~~s~~~~-------~H---sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASSTGGP-------RH---SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYS 1232 (1516)
T ss_pred             cccCchHHHhccccccCc-------cc---cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhh
Confidence            43  35779998653221       11   11345678898765555666666789999999988776643221    12


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (301)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  236 (301)
                      =....|+|+.++++-   ||  .+||.+..+.++.+..-..  -..=.|+|.|..     ++..+     .|||+++.+.
T Consensus      1233 ~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~e-----VIINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNE-----VIINS-----EIWDMRTFKL 1295 (1516)
T ss_pred             ccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhee--cccccccCCCce-----EEeec-----hhhhhHHHHH
Confidence            367889999887764   44  4899998877777653221  223359999997     34433     3899999887


Q ss_pred             eeeeeccCCCcEEEEEcCCCCEEEEe
Q 022184          237 IGHKRLLRKPASVLSISLDGKYLAMG  262 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~  262 (301)
                      ++.....+.  ..+.|+..|..++..
T Consensus      1296 Lh~VP~Ldq--c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1296 LHSVPSLDQ--CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             HhcCccccc--eEEEeccCccchhhh
Confidence            765544332  557787777765544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.71  E-value=1.6e-06  Score=71.84  Aligned_cols=159  Identities=16%  Similarity=0.072  Sum_probs=102.3

Q ss_pred             CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEe---CC-CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCC
Q 022184          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (301)
                      ..+.+-|.+ +.....+......+..-+|+|+++.++..+   .. ..+.++|+.+++.......  ...-...+|+|||
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG  249 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDG  249 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCC
Confidence            345555544 444444544556788889999998766543   22 4699999998877666652  2234567899999


Q ss_pred             CcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCceeeccccccc
Q 022184          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLH  286 (301)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~i~~~~~~~~~~~~~~~~  286 (301)
                      +++.+  .......-.|.++|+.+....+ +....+.-+.-.|+|||++|+..+.. |  .|.+++++.....+......
T Consensus       250 ~~l~f--~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~  326 (425)
T COG0823         250 SKLAF--SSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG  326 (425)
T ss_pred             CEEEE--EECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC
Confidence            97422  2333344567788888776433 44334444477899999998887643 3  58888888776654443222


Q ss_pred             cCccEEEEEEccCCC
Q 022184          287 LGTSIALVEFCPTQR  301 (301)
Q Consensus       287 ~~~~v~~~~~spdg~  301 (301)
                         .-....|+|||+
T Consensus       327 ---~~~~p~~SpdG~  338 (425)
T COG0823         327 ---GNSNPVWSPDGD  338 (425)
T ss_pred             ---CCcCccCCCCCC
Confidence               222788899885

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=1.3e-05  Score=69.33  Aligned_cols=202  Identities=10%  Similarity=0.087  Sum_probs=122.9

Q ss_pred             ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCc-ceEEEECCCCCeEEEEecCC-----cEEEEEE
Q 022184           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNPSGDDFVCSTTNG-----GCKLFEV   92 (301)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~~~~~d~-----~i~~w~~   92 (301)
                      +..+|.|+..+        +||.++..-.       ....+..+... |..+-...+..+|++.+.|+     .+++|++
T Consensus        35 ~~~vvigt~~G--------~V~~Ln~s~~-------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l   99 (933)
T KOG2114|consen   35 TGSVVIGTADG--------RVVILNSSFQ-------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL   99 (933)
T ss_pred             CceEEEeeccc--------cEEEecccce-------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence            44677766444        4555543221       12345666666 44444444446777777664     5899999


Q ss_pred             cCCcccc--ccc-cccC-C-CC-CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC----CcceecccccCCccEEEEEe
Q 022184           93 YGGATDI--NLL-AKKM-P-PL-QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP----SLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        93 ~~~~~~~--~~~-~~~~-~-~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~----~~~~~~~~~~~~~~i~~~~~  162 (301)
                      +..+...  ... .... . .. ....++.+++.+.+-+.+|.|-.+|.|..+.-+    .+....-......+|+.+++
T Consensus       100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence            7653211  111 0001 1 11 134678999999998999999999999988432    12221122234469999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      ..+++.++....-..|.+|.+....+......+++....|..+++....     ++. +.+..+.+||.....+-..+.
T Consensus       180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-----fIc-a~~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-----FIC-AGSEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-----EEE-ecCceEEEEcCCCcceeeeec
Confidence            9998874444455789999998555444444566667888888877663     122 234479999987555443443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.69  E-value=4e-05  Score=61.57  Aligned_cols=253  Identities=12%  Similarity=0.097  Sum_probs=119.3

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  112 (301)
                      .++.-++|.++..+.....      ...+..+......++|+.+.++.......++-.|+++.+......  .     ..
T Consensus        56 ~dg~~nly~lDL~t~~i~Q------LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~--~-----p~  122 (386)
T PF14583_consen   56 FDGNRNLYLLDLATGEITQ------LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE--V-----PD  122 (386)
T ss_dssp             TTSS-EEEEEETTT-EEEE---------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE---------T
T ss_pred             cCCCcceEEEEcccCEEEE------CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE--C-----Cc
Confidence            4556688888887765522      122222334456678888888776666678888887765421111  0     11


Q ss_pred             CCeeEEEEee--CCCEEEEee----------------------cCCeEEEEeCCCcceecccccCCccEEEEEecCC-Cc
Q 022184          113 GPQKCLSFSV--DGSRFAAGG----------------------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD-SE  167 (301)
Q Consensus       113 ~~v~~~~~s~--~~~~l~~~~----------------------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~  167 (301)
                      .-+-...|..  |+..++-.-                      -...|...|+.+|+... +.....-+..+.|+|. ..
T Consensus       123 ~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~-v~~~~~wlgH~~fsP~dp~  201 (386)
T PF14583_consen  123 DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV-VFEDTDWLGHVQFSPTDPT  201 (386)
T ss_dssp             TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE-EEEESS-EEEEEEETTEEE
T ss_pred             ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE-EEecCccccCcccCCCCCC
Confidence            2233355543  455543221                      11345556777776533 3334456778899994 45


Q ss_pred             EEEEEeCC---C-cEEEEeCCC-CceEEEEeecC-CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          168 FLATTSTD---G-SARIWKTED-GVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       168 ~l~~~~~d---~-~i~i~d~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      .|+.|-+.   . .-|||-+++ +.....+..+. ...+.-=-|.|||..++......++.+..|.-+|+.+++......
T Consensus       202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~  281 (386)
T PF14583_consen  202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME  281 (386)
T ss_dssp             EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE
T ss_pred             EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe
Confidence            66666532   1 124554442 33333332222 223455579999998665544456667788899999876543222


Q ss_pred             ccCCCcEEEEEcCCCCEEEEeeCCC----------------cEEEEeCCCceeecccc--------ccccCccEEEEEEc
Q 022184          242 LLRKPASVLSISLDGKYLAMGSKDG----------------DICVVDVKKMEINHWSK--------RLHLGTSIALVEFC  297 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~d~----------------~i~i~~~~~~~~~~~~~--------~~~~~~~v~~~~~s  297 (301)
                      .  .....+--++||++++-=+.|.                -|++++++.+.......        .++..-.=..+.|+
T Consensus       282 ~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FS  359 (386)
T PF14583_consen  282 M--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFS  359 (386)
T ss_dssp             E---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-
T ss_pred             C--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccC
Confidence            1  2345566688998776544432                46678887765432211        11101112468999


Q ss_pred             cCCC
Q 022184          298 PTQR  301 (301)
Q Consensus       298 pdg~  301 (301)
                      ||||
T Consensus       360 PDgk  363 (386)
T PF14583_consen  360 PDGK  363 (386)
T ss_dssp             TTSS
T ss_pred             CCCC
Confidence            9996

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.63  E-value=5.3e-06  Score=64.01  Aligned_cols=181  Identities=17%  Similarity=0.115  Sum_probs=108.2

Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      +|+|..||..+++.........     ......+. ..+++..+++++.++.|+.||..+|+.+.+.... .++.... .
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-----~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-----GIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-V   73 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-----SCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-E
T ss_pred             CCEEEEEECCCCCEEEEEECCC-----CCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-e
Confidence            5677777777666544432110     01111111 3346677888889999999999999887665432 2211111 2


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEE-eecCC-C-CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSD-E-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      .++..++.++.++.+..+|.++|+.+-.. ....+ . .........++..     ++.+..++.|..+|+++++.+-..
T Consensus        74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR-----LYVGTSSGKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE-----EEEEETCSEEEEEETTTTEEEEEE
T ss_pred             ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCE-----EEEEeccCcEEEEecCCCcEEEEe
Confidence            23556666778889999999999998874 32211 1 1122223333554     455666899999999999987666


Q ss_pred             eccCCCc-----------EEEEEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184          241 RLLRKPA-----------SVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       241 ~~~~~~v-----------~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                      .......           ..+.+. ++ .++.++.++.+.-+|+.+++.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~  196 (238)
T PF13360_consen  149 PVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKL  196 (238)
T ss_dssp             ESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEE
T ss_pred             ecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEE
Confidence            5533221           222222 44 7777777776444499999855

...

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.63  E-value=2.7e-05  Score=58.98  Aligned_cols=209  Identities=10%  Similarity=0.094  Sum_probs=109.8

Q ss_pred             EEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee-CCceeccccccCCcceEEEECCCC------CeEEE
Q 022184            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT-SPLVTYVFDESEGDPMTIAVNPSG------DDFVC   80 (301)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~------~~l~~   80 (301)
                      .-++|+||   ..++|++.      +.++|+++++-.  ..+.. .|.... ...-..+|..+.|-+..      ..|++
T Consensus        47 Rkl~WSpD---~tlLa~a~------S~G~i~vfdl~g--~~lf~I~p~~~~-~~d~~~Aiagl~Fl~~~~s~~ws~ELlv  114 (282)
T PF15492_consen   47 RKLAWSPD---CTLLAYAE------STGTIRVFDLMG--SELFVIPPAMSF-PGDLSDAIAGLIFLEYKKSAQWSYELLV  114 (282)
T ss_pred             eEEEECCC---CcEEEEEc------CCCeEEEEeccc--ceeEEcCccccc-CCccccceeeeEeeccccccccceeEEE
Confidence            45899988   77888866      455667776543  22211 121111 11234667888885532      24566


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCC-CCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEE
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~  159 (301)
                      -..+|.++-|-+..+....-........ ......|.++.|+|..++|++|+....      +.+.    .......+++
T Consensus       115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLta  184 (282)
T PF15492_consen  115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTA  184 (282)
T ss_pred             EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceE
Confidence            6788888888774332111000000111 113568999999999888887764321      0000    0011112222


Q ss_pred             EEecCCCcE--EEEEeCCC------cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184          160 MDFSLDSEF--LATTSTDG------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (301)
Q Consensus       160 ~~~~~~~~~--l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  231 (301)
                      -..-.+..+  .++...|+      +..+|.+-+.+.. .........|..+..||||..     +++...+|.|.+|++
T Consensus       185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~f-s~~~~~~d~i~kmSlSPdg~~-----La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFF-SRQGQEQDGIFKMSLSPDGSL-----LACIHFSGSLSLWEI  258 (282)
T ss_pred             EEEcCCCCcEEEccccCccccccccccceeeccceeee-eccccCCCceEEEEECCCCCE-----EEEEEcCCeEEEEec
Confidence            222211111  11222221      1223333222111 112223446999999999997     788889999999999


Q ss_pred             cCceEeeeeeccC
Q 022184          232 STWNKIGHKRLLR  244 (301)
Q Consensus       232 ~~~~~~~~~~~~~  244 (301)
                      .+-+........+
T Consensus       259 PsL~~~~~W~~~e  271 (282)
T PF15492_consen  259 PSLRLQRSWKQDE  271 (282)
T ss_pred             Ccchhhcccchhh
Confidence            8776655544433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.62  E-value=1.5e-08  Score=83.98  Aligned_cols=198  Identities=15%  Similarity=0.077  Sum_probs=128.6

Q ss_pred             CCcceEEEECCCCC--eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEee----cCCe
Q 022184           63 EGDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGG----VDGH  135 (301)
Q Consensus        63 ~~~v~~~~~~~~~~--~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~  135 (301)
                      ...+.|+++.-+.+  .++.|..+|.|-+-.+........     ...-.+..+.++++|++ |.+.||+|-    .|..
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~-----E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~  130 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA-----EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS  130 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccc-----eecccccccccccccccccHHHHHhhhhhhcccCC
Confidence            45577888766443  677888899999988875543211     11123457889999999 677788774    3578


Q ss_pred             EEEEeCCCc--ce--eccccc-CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE-EEEeecCCCCeeEEEEcc-C
Q 022184          136 LRIMHWPSL--RI--ILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSK-D  208 (301)
Q Consensus       136 i~v~d~~~~--~~--~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~-~  208 (301)
                      +.|||+.++  .+  ...+.. ......+++|..+.+.+.+|.....++++|+|..... ..+.   ...+..+...| .
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~  207 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFS  207 (783)
T ss_pred             ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCC
Confidence            999999876  11  111222 2235668999988899999999999999999843322 2222   11356677777 5


Q ss_pred             CCcceEEEEEEeCCcceEEEEE-ccCceE-eeeeecc----CCCcEEEEEcCCC-CEEEEee-CCCcEEEEeCC
Q 022184          209 GTKPFLFCTVQRGDKALLAVYD-ISTWNK-IGHKRLL----RKPASVLSISLDG-KYLAMGS-KDGDICVVDVK  274 (301)
Q Consensus       209 ~~~~~~~~~~~~~~~~~i~~~d-~~~~~~-~~~~~~~----~~~v~~~~~s~~~-~~l~~~~-~d~~i~i~~~~  274 (301)
                      +.+      +....|+.|.+|| .++-+. +..+...    ...+..++|.|.. ..+++.. ..++|++|++.
T Consensus       208 ~nY------~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  208 PNY------FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCc------eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            555      4455699999999 443332 2222111    2348899999953 2444444 44789999986

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=2.5e-06  Score=73.57  Aligned_cols=112  Identities=16%  Similarity=0.209  Sum_probs=86.4

Q ss_pred             CcceEEEECCCCCeEEEEec----CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184           64 GDPMTIAVNPSGDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~----d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  139 (301)
                      +..+-..|+|...++++++.    .|.|.||-- +++....        ..-+-.+.+++|+|..-.|+.|-.-|.+.+|
T Consensus        16 avsti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~--------Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~   86 (1416)
T KOG3617|consen   16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRD--------VTYPVHATSLCWHPEEFVLAQGWEMGVSDVQ   86 (1416)
T ss_pred             ccccccccCCCCceeEEEEecCCCCceEEEEec-CCCCCcc--------cccceehhhhccChHHHHHhhccccceeEEE
Confidence            33455789999999998864    478888753 3332111        1112235679999998889999999999999


Q ss_pred             eCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 022184          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE  184 (301)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  184 (301)
                      ...+.+.......|..+|..+.|+|+|..++++..-|.+.+|...
T Consensus        87 ~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   87 KTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            987777655566788899999999999999999999999999875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.56  E-value=7.7e-05  Score=57.11  Aligned_cols=200  Identities=12%  Similarity=0.122  Sum_probs=107.8

Q ss_pred             ccccCCcceEEEECCCCCeEEE-EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEE
Q 022184           59 FDESEGDPMTIAVNPSGDDFVC-STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~-~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (301)
                      +.+-...+..++|+|+.+.|++ ....+.|..++.+ ++...++.      +...+..-.+++..++.++++.-.++.+.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~------l~g~~D~EgI~y~g~~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP------LDGFGDYEGITYLGNGRYVLSEERDQRLY   89 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-------SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe------CCCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence            4455666999999998765554 4455666655543 33322211      12345677888887776666555689999


Q ss_pred             EEeCCCcce------ec--c--cc-cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC---CceEEEEee-------cC
Q 022184          138 IMHWPSLRI------IL--D--EP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLTR-------NS  196 (301)
Q Consensus       138 v~d~~~~~~------~~--~--~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~-------~~  196 (301)
                      ++++.....      ..  .  +. .+...+..++|+|.++.|+.+-...-..+|.++.   ...+.....       ..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            998843211      01  1  11 2334689999999887777776666667776654   222222110       11


Q ss_pred             CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC---------CCcEEEEEcCCCCEEEEeeCCCc
Q 022184          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLAMGSKDGD  267 (301)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~d~~  267 (301)
                      -..+.+++++|....+    ++.+.....|..+| .+++.+..+....         ...-.++|+++|++.++. +-+.
T Consensus       170 ~~d~S~l~~~p~t~~l----liLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNl  243 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHL----LILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNL  243 (248)
T ss_dssp             SS---EEEEETTTTEE----EEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTE
T ss_pred             eccccceEEcCCCCeE----EEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCce
Confidence            2247889999988774    35577888999999 5566655443332         246789999999655544 5666


Q ss_pred             EEEE
Q 022184          268 ICVV  271 (301)
Q Consensus       268 i~i~  271 (301)
                      .++|
T Consensus       244 fy~f  247 (248)
T PF06977_consen  244 FYRF  247 (248)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.56  E-value=0.0001  Score=56.48  Aligned_cols=202  Identities=11%  Similarity=0.091  Sum_probs=109.8

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ..+..++|.|+.  ..++++.....        .|+.++.++..+.     ...+.+ .+..-.|++..++.++++.-++
T Consensus        22 ~e~SGLTy~pd~--~tLfaV~d~~~--------~i~els~~G~vlr-----~i~l~g-~~D~EgI~y~g~~~~vl~~Er~   85 (248)
T PF06977_consen   22 DELSGLTYNPDT--GTLFAVQDEPG--------EIYELSLDGKVLR-----RIPLDG-FGDYEGITYLGNGRYVLSEERD   85 (248)
T ss_dssp             S-EEEEEEETTT--TEEEEEETTTT--------EEEEEETT--EEE-----EEE-SS--SSEEEEEE-STTEEEEEETTT
T ss_pred             CCccccEEcCCC--CeEEEEECCCC--------EEEEEcCCCCEEE-----EEeCCC-CCCceeEEEECCCEEEEEEcCC
Confidence            348899999663  56777755322        5777877654332     233444 4568899998888777776678


Q ss_pred             CcEEEEEEcCCccccccc---cccCCC-CCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC---cceec-----c---
Q 022184           85 GGCKLFEVYGGATDINLL---AKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---LRIIL-----D---  149 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~---~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~---~~~~~-----~---  149 (301)
                      +.+.++++..........   .-.+.. ..++..+-.++|+|.++.|+++-+..-..+|.++.   .....     .   
T Consensus        86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~  165 (248)
T PF06977_consen   86 QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD  165 (248)
T ss_dssp             TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred             CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence            999999995433211111   001111 23456789999999888888887776666666543   11110     0   


Q ss_pred             cccCCccEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeecC--------CCCeeEEEEccCCCcceEEEEEEe
Q 022184          150 EPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS--------DEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       150 ~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      .......+.+++++|. +.+++....+..+..+| .+|+.+..+....        -.....++|.++|+.      ...
T Consensus       166 ~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L------YIv  238 (248)
T PF06977_consen  166 DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL------YIV  238 (248)
T ss_dssp             HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E------EEE
T ss_pred             ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE------EEE
Confidence            1112235788999995 45666667788899999 6777766654332        124789999999973      444


Q ss_pred             CCcceEEEE
Q 022184          221 GDKALLAVY  229 (301)
Q Consensus       221 ~~~~~i~~~  229 (301)
                      ++.+..++|
T Consensus       239 sEpNlfy~f  247 (248)
T PF06977_consen  239 SEPNLFYRF  247 (248)
T ss_dssp             ETTTEEEEE
T ss_pred             cCCceEEEe
Confidence            555555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.55  E-value=1.7e-05  Score=66.10  Aligned_cols=184  Identities=12%  Similarity=0.060  Sum_probs=107.2

Q ss_pred             eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCcceecccccCC
Q 022184           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  154 (301)
                      .++.++.++.+..+|.++++.....................+.-+|  .+..++.++.+|.+..+|..+++.+.+.... 
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-  285 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG-  285 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC-
Confidence            4555667788888888777654332110000000000011111122  3456777778999999999999876544321 


Q ss_pred             ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  234 (301)
                       ....+..  .+..++.++.++.+..+|..+++.+-................ ++ .     ++.++.+|.|...|..++
T Consensus       286 -~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g-~-----l~v~~~~G~l~~ld~~tG  355 (394)
T PRK11138        286 -SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NG-Y-----LVVGDSEGYLHWINREDG  355 (394)
T ss_pred             -CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CC-E-----EEEEeCCCEEEEEECCCC
Confidence             1112222  456777788899999999999876543321111112222221 33 3     566788999999999999


Q ss_pred             eEeeeeeccCCCcEE-EEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          235 NKIGHKRLLRKPASV-LSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       235 ~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                      +.+...+.....+.+ ..+  .+..|++++.||.|+.++.
T Consensus       356 ~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        356 RFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            887666543333322 222  2457888899999988765

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.55  E-value=1.3e-05  Score=68.17  Aligned_cols=184  Identities=9%  Similarity=0.021  Sum_probs=112.0

Q ss_pred             ECCCCCeEEEE-ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC----eEEEEeCCCcc
Q 022184           71 VNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSLR  145 (301)
Q Consensus        71 ~~~~~~~l~~~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~v~d~~~~~  145 (301)
                      ++|||+.+... -..+.+.+.|.++.+...++.        -.+....+.++|+|+++++.+.+.    ++...+.....
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~--------Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d  271 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVM--------VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD  271 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEE--------eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc
Confidence            45566655322 223566666766554422221        123446678999999988876322    22222221111


Q ss_pred             eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-----CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      ....+..  ..+  -++.++|++...  .++.|.+.|.++     .+.+..+..+  .....+.++|||+++    ++++
T Consensus       272 ~~vvfni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkyl----yVan  339 (635)
T PRK02888        272 WVVVFNI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYF----IANG  339 (635)
T ss_pred             eEEEEch--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEE----EEeC
Confidence            1100000  000  023457776555  367899999988     3445555433  358899999999984    4677


Q ss_pred             CCcceEEEEEccCceE------------eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          221 GDKALLAVYDISTWNK------------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      ..+.++.++|+.+.+.            ..+... .......+|+++|+...+---|..|..||+..
T Consensus       340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            7799999999987553            233333 23345678999998888888899999999876

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.53  E-value=4.3e-08  Score=81.31  Aligned_cols=207  Identities=14%  Similarity=0.180  Sum_probs=127.7

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEe--
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST--   82 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~--   82 (301)
                      -+.|++|+-+.+ .-++++|.      ..|.|-+..+......      ......+|....++++|++ |.+.||+|-  
T Consensus        58 y~kcva~~y~~d-~cIlavG~------atG~I~l~s~r~~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldk  124 (783)
T KOG1008|consen   58 YVKCVASFYGND-RCILAVGS------ATGNISLLSVRHPHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDK  124 (783)
T ss_pred             CceeehhhcCCc-hhhhhhcc------ccCceEEeecCCcccc------cceecccccccccccccccccHHHHHhhhhh
Confidence            467888876532 24556655      3355556555332211      0123567888999999998 566777662  


Q ss_pred             --cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184           83 --TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (301)
Q Consensus        83 --~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  160 (301)
                        .|..+.|||+.+.-..+..... +.. .......+++|-.+.+++.+|.....+.++|++...... ..-....+..+
T Consensus       125 hrnds~~~Iwdi~s~ltvPke~~~-fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~  201 (783)
T KOG1008|consen  125 HRNDSSLKIWDINSLLTVPKESPL-FSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGI  201 (783)
T ss_pred             hcccCCccceecccccCCCccccc-ccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccc
Confidence              3568999999876331111111 111 122445688888888899999999999999998443211 11223456777


Q ss_pred             EecC-CCcEEEEEeCCCcEEEEe-CCCCce-EEEEee---cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184          161 DFSL-DSEFLATTSTDGSARIWK-TEDGVA-WTFLTR---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (301)
Q Consensus       161 ~~~~-~~~~l~~~~~d~~i~i~d-~~~~~~-~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  232 (301)
                      ...| .++++++-. |+.|.+|| .+.-+. +..+..   .....+..++|+|....+.   +......++|++||+.
T Consensus       202 tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgll---a~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  202 TVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLL---AVLSRDSITIRLYDIC  275 (783)
T ss_pred             eecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchh---hhhccCcceEEEeccc
Confidence            8888 777887766 89999999 333222 221111   1112488999999876532   2334556789999975

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=98.49  E-value=0.00019  Score=58.29  Aligned_cols=241  Identities=11%  Similarity=0.093  Sum_probs=106.7

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEEC-----------CCCCeEEEEe-cCCcEEEEEEcCCccccc
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN-----------PSGDDFVCST-TNGGCKLFEVYGGATDIN  100 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----------~~~~~l~~~~-~d~~i~~w~~~~~~~~~~  100 (301)
                      ....+...+++++....- +......+..-.++....-|+           .+.++|+..+ .+++|+++|+.+.....+
T Consensus        35 ~pD~LatVDvdP~S~tYg-qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~  113 (461)
T PF05694_consen   35 KPDYLATVDVDPDSPTYG-QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR  113 (461)
T ss_dssp             ---EEEEEE--TTSTTTT-SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E
T ss_pred             CCCeEEEEECCCCCCCcc-cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc
Confidence            344556667777653321 111222233223456666665           2456777766 678999999986554333


Q ss_pred             cccccCC-CCC---CCCCeeEEEEeeCCCEEEEeec------CCeEEEEeCCCcceecccccCC---ccEEEEEecCCCc
Q 022184          101 LLAKKMP-PLQ---DAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAH---KSVLDMDFSLDSE  167 (301)
Q Consensus       101 ~~~~~~~-~~~---~~~~v~~~~~s~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~  167 (301)
                      +...... .+.   .-.....+-.-|+|+.++++-.      -|-+.++|-++.+.........   ..-..+-|.|..+
T Consensus       114 l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n  193 (461)
T PF05694_consen  114 LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN  193 (461)
T ss_dssp             EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT
T ss_pred             eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC
Confidence            3221110 000   1122233444568888887632      2567788877766655443322   2456788889888


Q ss_pred             EEEEEeC--------------------CCcEEEEeCCCCceEEEEeecCCC-CeeEEEEccCCCcceEEEEEEeCCcceE
Q 022184          168 FLATTST--------------------DGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALL  226 (301)
Q Consensus       168 ~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~i  226 (301)
                      .++|...                    ..++.+||+.+.+.++++....++ .+..+.|..+-...+-++.++  -.++|
T Consensus       194 vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~i  271 (461)
T PF05694_consen  194 VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSSI  271 (461)
T ss_dssp             EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEE
T ss_pred             EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccceE
Confidence            8887642                    357999999999999999865443 355677765544322222222  23344


Q ss_pred             EEEEc-cCce----Eeeeeec-----------------cCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCc
Q 022184          227 AVYDI-STWN----KIGHKRL-----------------LRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKM  276 (301)
Q Consensus       227 ~~~d~-~~~~----~~~~~~~-----------------~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~  276 (301)
                      ..|-. +.++    .+-.+..                 ...-++.+..|.|.++|++.+ .+|.|+.||+...
T Consensus       272 ~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  272 WRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             EEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence            44433 3322    1111111                 123478999999999998887 4799999999864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.46  E-value=4.9e-05  Score=62.54  Aligned_cols=217  Identities=17%  Similarity=0.130  Sum_probs=117.8

Q ss_pred             cceEEEECCCCCeEEEEecCCcEEEEEEcCCcccc------cc-------------------ccccCCC-----------
Q 022184           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI------NL-------------------LAKKMPP-----------  108 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~------~~-------------------~~~~~~~-----------  108 (301)
                      .|+.+.|.++...|+++...|.|.||.....+...      ..                   ..+....           
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47899999998899999999999999886543211      00                   0000000           


Q ss_pred             CCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc--cc------CCccEEEEEecC-----CC---cEEEEE
Q 022184          109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE--PK------AHKSVLDMDFSL-----DS---EFLATT  172 (301)
Q Consensus       109 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~------~~~~i~~~~~~~-----~~---~~l~~~  172 (301)
                      ....++|++++.|. =-++++|.++|.+.|.|++....+...  ..      ....++++.|..     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            01147889999874 449999999999999999876654431  11      123688888863     33   368888


Q ss_pred             eCCCcEEEEeCCC---CceEEEEe---ecCCCCeeEEE-EccCCCcceEE---------------EEEEeCCcceEEEEE
Q 022184          173 STDGSARIWKTED---GVAWTFLT---RNSDEKIELCR-FSKDGTKPFLF---------------CTVQRGDKALLAVYD  230 (301)
Q Consensus       173 ~~d~~i~i~d~~~---~~~~~~~~---~~~~~~v~~~~-~~~~~~~~~~~---------------~~~~~~~~~~i~~~d  230 (301)
                      ...|.+.+|.+.-   +.....+.   .....++..+. ++.+......+               .++....+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999998751   22211111   12233444443 43221110000               012223356799999


Q ss_pred             ccCceEeeeeeccCCCcEEEEEc-----CCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          231 ISTWNKIGHKRLLRKPASVLSIS-----LDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      ..+.+..............+.+-     ..+..|++-..+|.|++|.+...+.+...
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~  298 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV  298 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence            88777654444221223334442     35667888899999999999988776554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.43  E-value=3.7e-05  Score=64.10  Aligned_cols=193  Identities=10%  Similarity=0.088  Sum_probs=106.6

Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccCC-CCCCC--CCee-EEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQDA--GPQK-CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~-~~~~~--~~v~-~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  150 (301)
                      +..+++++.++.+.-+|.++++...+....... .....  ..+. .+..  ++..++.++.+|.++-+|.++|+.+.+.
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            557777778888888888887765443221100 00000  0010 1111  4557778888999999999999987665


Q ss_pred             ccCCccEEE-EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCC----eeEEEEccCCCcceEEEEEEeCCcce
Q 022184          151 PKAHKSVLD-MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       151 ~~~~~~i~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      .... .+.+ ...  .+..++.+..++.+..+|.++|+.+-.........    ....... ++ .     ++.+..++.
T Consensus       147 ~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-~-----v~~~~~~g~  216 (394)
T PRK11138        147 KVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG-G-----AIVGGDNGR  216 (394)
T ss_pred             cCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-E-----EEEEcCCCE
Confidence            4332 2221 111  24456677788999999999999877665321100    0011111 12 2     345567788


Q ss_pred             EEEEEccCceEeeeeeccCC-------CcEEEEEcC--CCCEEEEeeCCCcEEEEeCCCceee
Q 022184          226 LAVYDISTWNKIGHKRLLRK-------PASVLSISL--DGKYLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~-------~v~~~~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                      +..+|..+++.+-.......       ....+.-+|  .+..+++++.+|.+..+|..+++.+
T Consensus       217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~  279 (394)
T PRK11138        217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV  279 (394)
T ss_pred             EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence            88888888765432211100       000111122  2345555666677777777766544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=0.00057  Score=56.58  Aligned_cols=222  Identities=11%  Similarity=0.171  Sum_probs=142.9

Q ss_pred             cceEEEECCCCCeEEEEecC-CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEE-eecCCeEEEEeCC
Q 022184           65 DPMTIAVNPSGDDFVCSTTN-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWP  142 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~v~d~~  142 (301)
                      ....+...+++..+...... ..+...+........  .    ... .......++.++.++.++. ...++.|.+.|..
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~--~----~~~-g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~  104 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQ--S----LSV-GGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA  104 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeee--e----ccC-CCccccceeeCCCCCeEEEecCCCCeEEEEcCc
Confidence            56678888888655544322 234444443111100  0    000 1133467788888875544 4456899999977


Q ss_pred             CcceecccccCCccEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEE
Q 022184          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                      +.+......... ....++++|+++.+..+..   ++++.+.|..+.+......... .+ ..++++|+|..++    .+
T Consensus       105 ~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vy----v~  177 (381)
T COG3391         105 TNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVY----VT  177 (381)
T ss_pred             ccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEE----EE
Confidence            766654443333 5678999999987766654   6889999999888888754332 23 8999999999743    44


Q ss_pred             eCCcceEEEEEccCceEee-e---eeccCCCcEEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeccccccccCccEE
Q 022184          220 RGDKALLAVYDISTWNKIG-H---KRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIA  292 (301)
Q Consensus       220 ~~~~~~i~~~d~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~v~  292 (301)
                      ...++.|.+.|.......+ .   ..........+.++|+|.++.+....   +.+...|..++............ ...
T Consensus       178 ~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~  256 (381)
T COG3391         178 NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APR  256 (381)
T ss_pred             ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCC
Confidence            4678999999977665542 1   01112345678999999977776544   58999999988777652222202 456


Q ss_pred             EEEEccCCC
Q 022184          293 LVEFCPTQR  301 (301)
Q Consensus       293 ~~~~spdg~  301 (301)
                      .+..+|+|+
T Consensus       257 ~v~~~p~g~  265 (381)
T COG3391         257 GVAVDPAGK  265 (381)
T ss_pred             ceeECCCCC
Confidence            677888774

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.5e-06  Score=72.37  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=79.2

Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEE-EEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  191 (301)
                      ..+.-+.|+|.-.+||.+..+|.|.+..++ .+.+..+.-+...++ +++|.|||+.||.|-.||+|++.|..++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            467889999999999999999999999887 666777765666666 999999999999999999999999999988877


Q ss_pred             EeecCCCCeeEEEEcc
Q 022184          192 LTRNSDEKIELCRFSK  207 (301)
Q Consensus       192 ~~~~~~~~v~~~~~~~  207 (301)
                      ........|.++-|++
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            5433445688888874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.41  E-value=2.4e-05  Score=67.76  Aligned_cols=70  Identities=13%  Similarity=0.138  Sum_probs=59.0

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      +++++|+|..-.|+.+-.-|.+.+|...+.+.       ..-...|..+|..+.|||+|..++++..-|.+.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCcee-------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            66799999888888888889999999877654       22334578899999999999999999999999999875

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.40  E-value=1.8e-05  Score=67.29  Aligned_cols=135  Identities=10%  Similarity=0.013  Sum_probs=86.1

Q ss_pred             EeeCCCEEEEeecCCeEEEEeCCC----cceecccccCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCce------
Q 022184          120 FSVDGSRFAAGGVDGHLRIMHWPS----LRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA------  188 (301)
Q Consensus       120 ~s~~~~~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------  188 (301)
                      +.++|++...+  ++.|.+.|..+    +..+.....-......++++|||+++++++ .+.++.|.|+.+.+.      
T Consensus       284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            34577776653  67899999887    333333334445678999999999877766 588999999987553      


Q ss_pred             ------EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC----------ceEeeeeeccCCCcEEE--
Q 022184          189 ------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST----------WNKIGHKRLLRKPASVL--  250 (301)
Q Consensus       189 ------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~v~~~--  250 (301)
                            ......  +......+|.++|..     ..+---|.+|..||+.+          ...+..+..|-.+..-.  
T Consensus       362 ~~~~~vvaevev--GlGPLHTaFDg~G~a-----ytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~  434 (635)
T PRK02888        362 KPRDAVVAEPEL--GLGPLHTAFDGRGNA-----YTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHAS  434 (635)
T ss_pred             CccceEEEeecc--CCCcceEEECCCCCE-----EEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeec
Confidence                  233332  223567789998863     23344577899999876          23333333333221111  


Q ss_pred             ---EEcCCCCEEEEee
Q 022184          251 ---SISLDGKYLAMGS  263 (301)
Q Consensus       251 ---~~s~~~~~l~~~~  263 (301)
                         .-.|||++|++..
T Consensus       435 ~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        435 MGETKEADGKWLVSLN  450 (635)
T ss_pred             CCCcCCCCCCEEEEcc
Confidence               2267888888874

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.40  E-value=0.00055  Score=54.40  Aligned_cols=188  Identities=13%  Similarity=0.017  Sum_probs=107.5

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-----------CC
Q 022184           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------DG  134 (301)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg  134 (301)
                      +.++..-..+..|+++ ..+ +.+++++.+.....+. . ...-......+.+...|+|.+.+.-..           -|
T Consensus        68 ~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~-~-~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G  143 (307)
T COG3386          68 FSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLA-E-PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG  143 (307)
T ss_pred             cccceeecCCCeEEEE-ccc-cEEEeccCCceeEEec-c-ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence            4444443344455544 444 7777775444311111 1 111112245678888999987665433           13


Q ss_pred             eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CCcEEEEeCCC--C----ceEEEEeecCCCCeeEEEEcc
Q 022184          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTED--G----VAWTFLTRNSDEKIELCRFSK  207 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~----~~~~~~~~~~~~~v~~~~~~~  207 (301)
                      .|+.+|. .+..+.....+-..-+.++|+||++.|..+.. .+.|.-|++..  +    +..........+..-.++...
T Consensus       144 ~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa  222 (307)
T COG3386         144 SLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA  222 (307)
T ss_pred             eEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence            3444443 34444444343445678999999987766654 47788887752  1    111122222334566778888


Q ss_pred             CCCcceEEEEEEeCCc-ceEEEEEccCceEeeeeeccCCCcEEEEEc-CCCCEEEEeeC
Q 022184          208 DGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKRLLRKPASVLSIS-LDGKYLAMGSK  264 (301)
Q Consensus       208 ~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~  264 (301)
                      +|..     -+.+..+ +.|..|+.. ++++..+......+++++|- |+.+.|++.+.
T Consensus       223 dG~l-----w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         223 DGNL-----WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCCE-----EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            8884     1133333 389999998 88888888776788888884 45555555443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.37  E-value=1.1e-05  Score=68.15  Aligned_cols=118  Identities=13%  Similarity=0.072  Sum_probs=89.2

Q ss_pred             cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC
Q 022184           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~  141 (301)
                      |...|.--+++..+++++.|+.-|.+++|+...+......      .....+.+..+..|++..++|+|+..|.|.++-+
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~------~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql  105 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK------NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL  105 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccc------ccCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence            3455666677778999999999999999998777642111      1113456677788999889999999999999987


Q ss_pred             CCcceecc---c---ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 022184          142 PSLRIILD---E---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (301)
Q Consensus       142 ~~~~~~~~---~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  185 (301)
                      ....+...   .   ..|...|++++|++++..+++|...|+|.+-.+..
T Consensus       106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            65432111   1   12456899999999999999999999999888876

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.34  E-value=0.00046  Score=56.96  Aligned_cols=205  Identities=14%  Similarity=0.138  Sum_probs=106.3

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcccccccccc-CCCCCCCCCeeEEEEee-----CC---CEEEE
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSV-----DG---SRFAA  129 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-----~~---~~l~~  129 (301)
                      ++...++|++++.|.-| ++|.|..+|.+.|.|+++........... .........++++.|+.     |+   -.+++
T Consensus        82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            34457889999998544 89999999999999998776543322211 11222346788898874     22   35788


Q ss_pred             eecCCeEEEEeCC--Ccc-ee----cccccCCccEEEEE-ecCC-----------------C---cEEEEEeCCCcEEEE
Q 022184          130 GGVDGHLRIMHWP--SLR-II----LDEPKAHKSVLDMD-FSLD-----------------S---EFLATTSTDGSARIW  181 (301)
Q Consensus       130 ~~~dg~i~v~d~~--~~~-~~----~~~~~~~~~i~~~~-~~~~-----------------~---~~l~~~~~d~~i~i~  181 (301)
                      |...|.+.+|.+.  .+. -.    .....+.++|..+. ++.+                 +   ..++....+..++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            8999999999874  111 11    11113344554444 3221                 0   123344446889999


Q ss_pred             eCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC----CCcEEEEEcCCCC
Q 022184          182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----KPASVLSISLDGK  257 (301)
Q Consensus       182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~s~~~~  257 (301)
                      ...+.+...... ........+.+-+-.....-.+++.-..+|.+++|.+..-+.+.......    ..+....++++|.
T Consensus       241 ~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd  319 (395)
T PF08596_consen  241 KPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD  319 (395)
T ss_dssp             -TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred             eCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence            998887766555 22223344455321101112235666679999999999888776665532    2344567789998


Q ss_pred             EEEEeeCC
Q 022184          258 YLAMGSKD  265 (301)
Q Consensus       258 ~l~~~~~d  265 (301)
                      .++..+..
T Consensus       320 i~~~~gps  327 (395)
T PF08596_consen  320 IFYWTGPS  327 (395)
T ss_dssp             EEEE-SSS
T ss_pred             EEEEeCcc
Confidence            77766543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.33  E-value=0.0002  Score=62.26  Aligned_cols=187  Identities=13%  Similarity=0.087  Sum_probs=105.3

Q ss_pred             CcceEEEECCCCCeEEEEe------cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC----
Q 022184           64 GDPMTIAVNPSGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----  133 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~------~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----  133 (301)
                      ..+.+.+++|+|+.++...      .|..-.||-...+.....+.       .. .....-.|+|||+.|.+....    
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-------~g-~~~t~PsWspDG~~lw~v~dg~~~~  421 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-------EG-HSLTRPSWSLDADAVWVVVDGNTVV  421 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-------cC-CCCCCceECCCCCceEEEecCcceE
Confidence            4688999999999888765      24444555444322211111       11 236778999998877766432    


Q ss_pred             --------CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEE---EeCCCCce-E---EEEeecCCC
Q 022184          134 --------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI---WKTEDGVA-W---TFLTRNSDE  198 (301)
Q Consensus       134 --------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i---~d~~~~~~-~---~~~~~~~~~  198 (301)
                              +.+.+.+++.++...   .....|..+.|+|||..++... +++|.+   -....|.. +   ..+......
T Consensus       422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~  497 (591)
T PRK13616        422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD  497 (591)
T ss_pred             EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence                    334444544443322   2345799999999999888776 477776   44444541 1   112222233


Q ss_pred             CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec--cCCCcEEEEEcCCCCEEEEeeCCCcEE
Q 022184          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDIC  269 (301)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~  269 (301)
                      .+..+.|..++.. +   +...+.+..+...++...... .+..  ...++..++=+++  .++....++.+.
T Consensus       498 ~~~~l~W~~~~~L-~---V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        498 TAVSLDWRTGDSL-V---VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ccccceEecCCEE-E---EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            3578999999984 1   223344444555555533221 1122  2355666766653  455666666333

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.31  E-value=0.0011  Score=56.84  Aligned_cols=192  Identities=13%  Similarity=0.112  Sum_probs=110.6

Q ss_pred             CCcEEEEEEcCCccccccccccCC--CCCCC-----------CCe-eEEEEeeCCCEEEEeecCC---------------
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMP--PLQDA-----------GPQ-KCLSFSVDGSRFAAGGVDG---------------  134 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~--~~~~~-----------~~v-~~~~~s~~~~~l~~~~~dg---------------  134 (301)
                      ++.+..+|.++++...+.......  .....           ..+ ...++.+.+..++.++.++               
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence            567888888877765544321100  00000           111 1345555566777776554               


Q ss_pred             ---eEEEEeCCCcceecccccCCccEE------EEEec----CCCc---EEEEEeCCCcEEEEeCCCCceEEEEeecCCC
Q 022184          135 ---HLRIMHWPSLRIILDEPKAHKSVL------DMDFS----LDSE---FLATTSTDGSARIWKTEDGVAWTFLTRNSDE  198 (301)
Q Consensus       135 ---~i~v~d~~~~~~~~~~~~~~~~i~------~~~~~----~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  198 (301)
                         .|.-+|.++++...+.........      ...+.    -++.   .++.++.+|.+...|.++|+.+-......  
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--  331 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--  331 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence               799999999998766532211111      00111    1333   57778889999999999999877654321  


Q ss_pred             CeeEEEEccCCCcceEEE-------------EEEeCCcceEEEEEccCceEeeeeeccC--------CCc--EEEEEcCC
Q 022184          199 KIELCRFSKDGTKPFLFC-------------TVQRGDKALLAVYDISTWNKIGHKRLLR--------KPA--SVLSISLD  255 (301)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~v--~~~~~s~~  255 (301)
                        ..++.+|  ..+|+..             ......++.+.-.|+.+++.+-......        .+.  ..+.  -.
T Consensus       332 --~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~  405 (488)
T cd00216         332 --QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TA  405 (488)
T ss_pred             --cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ec
Confidence              1123333  2211100             0012346789999999988764443321        111  1122  24


Q ss_pred             CCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          256 GKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       256 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      +..|++++.||.|+.+|.++|+.+-...
T Consensus       406 g~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         406 GNLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             CCeEEEECCCCeEEEEECCCCceeeEEE
Confidence            6789999999999999999999886653

The alignment model contains an 8-bladed beta-propeller.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=5.2e-06  Score=69.22  Aligned_cols=93  Identities=23%  Similarity=0.200  Sum_probs=77.7

Q ss_pred             CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcE-EEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPAS-VLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      .+..+.|+|.-..     ++.+..+|.|.+..+. ++.+-.+..++..++ +++|.|||+.||+|-.||+|++.|+.++.
T Consensus        22 ~i~~~ewnP~~dL-----iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   22 NIKRIEWNPKMDL-----IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ceEEEEEcCccch-----hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            4788999999887     6888899999999988 677777777777777 99999999999999999999999999998


Q ss_pred             eeccccccccCccEEEEEEcc
Q 022184          278 INHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       278 ~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      .+....... ...|..+-|.|
T Consensus        96 ~l~~~~~s~-e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSV-ETDISKGIWDR  115 (665)
T ss_pred             ceecccccc-ccchheeeccc
Confidence            777643233 67788888764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.28  E-value=0.00021  Score=60.77  Aligned_cols=150  Identities=15%  Similarity=0.197  Sum_probs=93.6

Q ss_pred             ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccc
Q 022184           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (301)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~   98 (301)
                      ..++++|...+        .+|-|+..++....     ....+-.+.+..+..+++..++|.|+..|.|.++.+..... 
T Consensus        45 ~~~l~~GsS~G--------~lyl~~R~~~~~~~-----~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-  110 (726)
T KOG3621|consen   45 EEYLAMGSSAG--------SVYLYNRHTGEMRK-----LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-  110 (726)
T ss_pred             CceEEEecccc--------eEEEEecCchhhhc-----ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-
Confidence            45888877544        35555555443321     12233456677788899998999999999999999887433 


Q ss_pred             cccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc----eecccccCCccEEEEEecCCCcEEEEEeC
Q 022184           99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTST  174 (301)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  174 (301)
                      ............|...|++++|++++..+++|...|.|..-.+.+..    ....+....++|-.++.. ++..|++...
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~  189 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT  189 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh
Confidence            32222112223367899999999999999999999999988877621    112222334567667665 3333333322


Q ss_pred             CCcEEEEeCCC
Q 022184          175 DGSARIWKTED  185 (301)
Q Consensus       175 d~~i~i~d~~~  185 (301)
                        .-.+++++.
T Consensus       190 --r~~Lc~tE~  198 (726)
T KOG3621|consen  190 --RCILCQTEA  198 (726)
T ss_pred             --hhheeecch
Confidence              234455543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.27  E-value=0.0018  Score=54.55  Aligned_cols=222  Identities=17%  Similarity=0.167  Sum_probs=116.9

Q ss_pred             cceEEEECCCCCeEEEE-ecCC----cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC------
Q 022184           65 DPMTIAVNPSGDDFVCS-TTNG----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------  133 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~-~~d~----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------  133 (301)
                      .+....++|+|+++|.+ +..|    .++++|+++++........        .....+.|.++++.|+....+      
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--------~~~~~~~W~~d~~~~~y~~~~~~~~~~  196 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--------PKFSSVSWSDDGKGFFYTRFDEDQRTS  196 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--------EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--------cccceEEEeCCCCEEEEEEeCcccccc
Confidence            34467899999999865 3334    5999999888653221111        112349999998887766433      


Q ss_pred             -----CeEEEEeCCCccee--cccccCCc-c-EEEEEecCCCcEEEEEeC---C-CcEEEEeCCCC----ceEEEEeecC
Q 022184          134 -----GHLRIMHWPSLRII--LDEPKAHK-S-VLDMDFSLDSEFLATTST---D-GSARIWKTEDG----VAWTFLTRNS  196 (301)
Q Consensus       134 -----g~i~v~d~~~~~~~--~~~~~~~~-~-i~~~~~~~~~~~l~~~~~---d-~~i~i~d~~~~----~~~~~~~~~~  196 (301)
                           ..|+.|.+.+....  ..+..... . ...+..++|+++|+....   + ..+.+.|+..+    .....+....
T Consensus       197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~  276 (414)
T PF02897_consen  197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE  276 (414)
T ss_dssp             CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred             cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence                 23777887665432  22222222 2 668889999998765432   2 35788888764    2344444333


Q ss_pred             CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE---eeeeeccCCCcEEEEEcCCCCEEEEe-eCCC--cEEE
Q 022184          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKPASVLSISLDGKYLAMG-SKDG--DICV  270 (301)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~--~i~i  270 (301)
                      ......+...  +..+++. .--....+.|...++.....   ...+..+...+.--.+...+.+|+.. ..++  .|++
T Consensus       277 ~~~~~~v~~~--~~~~yi~-Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v  353 (414)
T PF02897_consen  277 DGVEYYVDHH--GDRLYIL-TNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRV  353 (414)
T ss_dssp             SS-EEEEEEE--TTEEEEE-E-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CceEEEEEcc--CCEEEEe-eCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEE
Confidence            3333334333  4432221 11223457788888876552   22344444433333344445455554 3343  6899


Q ss_pred             EeCC-CceeeccccccccCccEEEEEEccC
Q 022184          271 VDVK-KMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       271 ~~~~-~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      +++. +....... ... .+.|..+...++
T Consensus       354 ~~~~~~~~~~~~~-~p~-~g~v~~~~~~~~  381 (414)
T PF02897_consen  354 YDLDDGKESREIP-LPE-AGSVSGVSGDFD  381 (414)
T ss_dssp             EETT-TEEEEEEE-SSS-SSEEEEEES-TT
T ss_pred             EECCCCcEEeeec-CCc-ceEEeccCCCCC
Confidence            9998 44433332 222 444555554443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.27  E-value=2e-05  Score=68.59  Aligned_cols=167  Identities=16%  Similarity=0.199  Sum_probs=116.5

Q ss_pred             CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeE
Q 022184          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL  202 (301)
Q Consensus       123 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~  202 (301)
                      ++..++.|+-...+..+|+++.+..+...-..+.+.-+..  +++.+.+|...|+|.+-|.++.+.++++..|.+ .+. 
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~-siS-  221 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG-SIS-  221 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecccc-cee-
Confidence            3456777777778888999988776555444445555544  588999999999999999999999999988765 354 


Q ss_pred             EEEccCCCcceEEEEEEeC---------CcceEEEEEccCceEeeeeeccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEe
Q 022184          203 CRFSKDGTKPFLFCTVQRG---------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVD  272 (301)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~  272 (301)
                       +|+-.|+.     +++.|         .|.-|+|||++..+.+..+..+.++ .-+.|.|. ...+++++..|...+-|
T Consensus       222 -DfDv~GNl-----LitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  222 -DFDVQGNL-----LITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             -eeeccCCe-----EEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence             45666665     33333         3567899999998877665555444 55788885 45788888899999999


Q ss_pred             CCC---ceeeccccccccCccEEEEEEccCCC
Q 022184          273 VKK---MEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       273 ~~~---~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..+   ...-....... ...+.++++|++|+
T Consensus       295 ~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~  325 (1118)
T KOG1275|consen  295 TATLSNPPAGVKMVNPN-GSGISAFDISSNGD  325 (1118)
T ss_pred             ccccCCCccceeEEccC-CCcceeEEecCCCc
Confidence            433   21111111222 44588999998874

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=9.8e-06  Score=64.00  Aligned_cols=94  Identities=16%  Similarity=0.165  Sum_probs=75.4

Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      +++.+..+.+...-+..+...|.+++|+|..+ ++..++.+..|+|.|+++......+..+  ..+++++|.-+..+.  
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~--  250 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHV--  250 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcce--
Confidence            55555555555554555667899999999777 7888999999999999999888888765  469999999998762  


Q ss_pred             EEEEEeCCcceEEEEEccCce
Q 022184          215 FCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~  235 (301)
                        +..|-..|.|.+||++..+
T Consensus       251 --IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  251 --IYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             --eEEeccCceEEEEEccCCC
Confidence              6778889999999998754

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.26  E-value=0.0018  Score=54.12  Aligned_cols=138  Identities=12%  Similarity=0.107  Sum_probs=82.4

Q ss_pred             EEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC
Q 022184          119 SFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE  198 (301)
Q Consensus       119 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  198 (301)
                      .++.+....+....++.+.+.+-...+.   + ...+++..++.||+++++|.-..+|.+.+.+..-.+....+......
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~  260 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS  260 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence            3445555555555566666554332211   2 23468999999999999999999999999987777777777655445


Q ss_pred             CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~  278 (301)
                      ....+.|.-+...      +..- ...+.+...           ...   .+.|.-++..++..-.|| ++|+.-..-+.
T Consensus       261 ~p~~~~WCG~dav------~l~~-~~~l~lvg~-----------~~~---~~~~~~~~~~~l~~E~DG-~riit~~~~~~  318 (410)
T PF04841_consen  261 PPKQMAWCGNDAV------VLSW-EDELLLVGP-----------DGD---SISFWYDGPVILVSEIDG-VRIITSTSHEF  318 (410)
T ss_pred             CCcEEEEECCCcE------EEEe-CCEEEEECC-----------CCC---ceEEeccCceEEeccCCc-eEEEeCCceEE
Confidence            6777888766442      1111 222333321           111   134444444555555666 77777666665


Q ss_pred             eccc
Q 022184          279 NHWS  282 (301)
Q Consensus       279 ~~~~  282 (301)
                      ++.+
T Consensus       319 l~~V  322 (410)
T PF04841_consen  319 LQRV  322 (410)
T ss_pred             EEEC
Confidence            5544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.26  E-value=0.00011  Score=61.29  Aligned_cols=168  Identities=13%  Similarity=0.143  Sum_probs=88.0

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEE
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  138 (301)
                      +....-.+..+.++|+|++++.+ .||...++.....+.            ...+......|.+.+ .+|+-...+.|.+
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~------------k~~G~g~~~vw~~~n-~yAv~~~~~~I~I   93 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN------------KAFGSGLSFVWSSRN-RYAVLESSSTIKI   93 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE------------EEEEE-SEEEE-TSS-EEEEE-TTS-EEE
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc------------cccCceeEEEEecCc-cEEEEECCCeEEE
Confidence            33445568999999999999884 677777877322211            012345678898854 5666666888999


Q ss_pred             E-eCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE
Q 022184          139 M-HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       139 ~-d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (301)
                      + +++ .+....+... ..+..+-.   |..|...+. +.|.+||..+++.+..+...   +|..+.|++++.+     +
T Consensus        94 ~kn~~-~~~~k~i~~~-~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~-----v  159 (443)
T PF04053_consen   94 YKNFK-NEVVKSIKLP-FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS---AVKYVIWSDDGEL-----V  159 (443)
T ss_dssp             EETTE-E-TT-----S-S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTSSE-----E
T ss_pred             EEcCc-cccceEEcCC-cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC---CCcEEEEECCCCE-----E
Confidence            6 432 2221222221 12333322   777777665 48999999999999988633   3899999999997     3


Q ss_pred             EEeCCcceEEEEEccCc-----------eEeeeeeccCCCcEEEEEcCC
Q 022184          218 VQRGDKALLAVYDISTW-----------NKIGHKRLLRKPASVLSISLD  255 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~-----------~~~~~~~~~~~~v~~~~~s~~  255 (301)
                      +..+ +..+.+++....           ............|.+.+|..|
T Consensus       160 al~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  160 ALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             EEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             EEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence            3333 335666654332           012222222456777788665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.26  E-value=0.0012  Score=55.43  Aligned_cols=186  Identities=15%  Similarity=0.191  Sum_probs=99.0

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      .+.-....|.+.+ .+|+-....+|.++.--+...        ...+.....+..+-.   |.+|+..+. +.|.+||+.
T Consensus        68 ~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~--------~k~i~~~~~~~~If~---G~LL~~~~~-~~i~~yDw~  134 (443)
T PF04053_consen   68 FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV--------VKSIKLPFSVEKIFG---GNLLGVKSS-DFICFYDWE  134 (443)
T ss_dssp             EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T--------T-----SS-EEEEE----SSSEEEEET-TEEEEE-TT
T ss_pred             cCceeEEEEecCc-cEEEEECCCeEEEEEcCcccc--------ceEEcCCcccceEEc---CcEEEEECC-CCEEEEEhh
Confidence            4556778999855 466666688899973221111        011111112333322   777777764 489999999


Q ss_pred             CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-----------ceEEEEeecCCCCeeEEEEccCCCc
Q 022184          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-----------VAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      +++.+.++...  +|..+.|++++++++..+.+ .+.+++.+..           .....+..- ...|.+..|..+  .
T Consensus       135 ~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~  208 (443)
T PF04053_consen  135 TGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--C  208 (443)
T ss_dssp             T--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--E
T ss_pred             HcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--E
Confidence            99988877533  48999999999999988754 6777664433           123333221 335889999877  2


Q ss_pred             ceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                       |   +.+.. . +|+.  +-.|+. ..+.....++.=+.+.|+.+.++....|+.|..+.+...
T Consensus       209 -f---iYtT~-~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  209 -F---IYTTS-N-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             -E---EEE-T-T-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             -E---EEEcC-C-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence             2   23322 3 6666  444443 234444567788888888788999999999999988643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.14  E-value=0.0011  Score=52.82  Aligned_cols=211  Identities=12%  Similarity=0.052  Sum_probs=118.7

Q ss_pred             EEEECCCCCeEEEE-ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce
Q 022184           68 TIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (301)
Q Consensus        68 ~~~~~~~~~~l~~~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  146 (301)
                      +..|.++...|+-+ -..+.|.-|+..+++..         .+.....+.++..-..+..|+++. . -+.+++.+++..
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---------~~~~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~   97 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR---------VFPSPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGK   97 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceE---------EEECCCCcccceeecCCCeEEEEc-c-ccEEEeccCCce
Confidence            34577777755544 45677888887755431         111223334444433444454443 2 355666655544


Q ss_pred             ecccc---cC--CccEEEEEecCCCcEEEEEeC-----C----CcEEEEeCC-CCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          147 ILDEP---KA--HKSVLDMDFSLDSEFLATTST-----D----GSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       147 ~~~~~---~~--~~~i~~~~~~~~~~~l~~~~~-----d----~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      +..+.   ..  ....+.+...|+|.+.++...     .    ..-.+|-+. .+.....+..+ -...+.++||||++.
T Consensus        98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~-~~~~NGla~SpDg~t  176 (307)
T COG3386          98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD-LTIPNGLAFSPDGKT  176 (307)
T ss_pred             eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc-EEecCceEECCCCCE
Confidence            22111   11  135677888999986665443     0    112344444 44444444332 234678999999986


Q ss_pred             ceEEEEEEeCCcceEEEEEccC--ceE-----eeeeeccCCCcEEEEEcCCCCEEEEeeCCC-cEEEEeCCCceeecccc
Q 022184          212 PFLFCTVQRGDKALLAVYDIST--WNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDG-DICVVDVKKMEINHWSK  283 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~--~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~  283 (301)
                      +    .++-+..+.|.-|++..  +..     ........+..-.++...+|.+.+++..+| .|.+|+.+ ++++..+.
T Consensus       177 l----y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~  251 (307)
T COG3386         177 L----YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK  251 (307)
T ss_pred             E----EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence            3    35556667888887752  111     111222345566788888898876555554 89999998 77777663


Q ss_pred             ccccCccEEEEEEc
Q 022184          284 RLHLGTSIALVEFC  297 (301)
Q Consensus       284 ~~~~~~~v~~~~~s  297 (301)
                      . + ...+++++|-
T Consensus       252 l-P-~~~~t~~~Fg  263 (307)
T COG3386         252 L-P-VKRPTNPAFG  263 (307)
T ss_pred             C-C-CCCCccceEe
Confidence            2 2 2556666663

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.12  E-value=0.0006  Score=60.47  Aligned_cols=144  Identities=15%  Similarity=0.087  Sum_probs=99.2

Q ss_pred             CCCEEEEe-ecCCeEEEEeCCCcceecccccCCc-cEEEEEecC-----CCcEEEEEeCCCcEEEEeCCCCc-eEEEEe-
Q 022184          123 DGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSL-----DSEFLATTSTDGSARIWKTEDGV-AWTFLT-  193 (301)
Q Consensus       123 ~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~-  193 (301)
                      +.++|+.- .....|+-.|++.|+.+.....+.. +|..++-..     +....+.|-.+..+..||.|-.. .+..-. 
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            34444443 3467899999999999888776654 355543321     13345667778899999998643 221111 


Q ss_pred             --ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184          194 --RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (301)
Q Consensus       194 --~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~  271 (301)
                        -.......|++-+.+|.      ++.|+.+|.|++||.-..+....+.+.+.+|..+..+.||+||++.+. ..+.++
T Consensus       572 k~Y~~~~~Fs~~aTt~~G~------iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi  644 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDGY------IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLI  644 (794)
T ss_pred             cccccCCCceEEEecCCce------EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence              11233577888888888      699999999999995443333455667899999999999999988875 467777


Q ss_pred             eC
Q 022184          272 DV  273 (301)
Q Consensus       272 ~~  273 (301)
                      +.
T Consensus       645 ~t  646 (794)
T PF08553_consen  645 DT  646 (794)
T ss_pred             EE
Confidence            75

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.12  E-value=0.0059  Score=54.52  Aligned_cols=132  Identities=14%  Similarity=0.233  Sum_probs=80.4

Q ss_pred             cEEEEEecCC-CcEEEEEeC----------CCcEEEEeCCCCceEEEEeec-CCCCeeEEEEccCCCcceEEEEEEeCCc
Q 022184          156 SVLDMDFSLD-SEFLATTST----------DGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (301)
Q Consensus       156 ~i~~~~~~~~-~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~  223 (301)
                      .+.++.|..| +.++++|..          .|.|.+|.....+.+.....+ -.+.+.++.- -+|+       ..++-.
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngk-------llA~In  847 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGK-------LLAGIN  847 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCe-------EEEecC
Confidence            3455568777 667777652          467888877764444333221 1223333322 1344       223445


Q ss_pred             ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC--ceeeccccccccCccEEEEEE
Q 022184          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK--MEINHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~  296 (301)
                      ..|++|+..+.+.++.-..+..++..+...-.|..+++|.--+++.+...+.  +.........+ ....+++.+
T Consensus       848 ~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~-p~Wmtavei  921 (1096)
T KOG1897|consen  848 QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYN-PNWMTAVEI  921 (1096)
T ss_pred             cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhC-ccceeeEEE
Confidence            6899999998877766667778888999988999999998878777655543  33443332333 444544444

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.11  E-value=0.002  Score=48.62  Aligned_cols=104  Identities=15%  Similarity=0.129  Sum_probs=70.7

Q ss_pred             CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCe-eEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ-KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (301)
Q Consensus        74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  152 (301)
                      -|++++.|...|.+++.+..+++....+...        +.| ......+++..+..++.|++.+..|.++...+.+.+-
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeeh--------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            4778999999999999999999764443321        122 1234566899999999999999999999888887665


Q ss_pred             CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 022184          153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (301)
Q Consensus       153 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  185 (301)
                      ..+-..+-+..|-...|..+...|.+.--..+.
T Consensus       134 gG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  134 GGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             CCceeccceecCCCceEEEEeccceEEEEccCC
Confidence            544445556666333344444455554444443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.07  E-value=0.0048  Score=51.61  Aligned_cols=179  Identities=12%  Similarity=0.078  Sum_probs=88.4

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      +.+.++.|+.+. .|++...||.++++|+.+.. ...+ ........ ....+....+..+|-.+++  .++.+.+.+--
T Consensus        81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl-~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~  155 (410)
T PF04841_consen   81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSL-GEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNI  155 (410)
T ss_pred             CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eech-hhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCc
Confidence            789999998854 55566799999999987444 1111 11111111 1122223333335533333  34444443221


Q ss_pred             Ccc-eeccc---ccCCc------cEEE-EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          143 SLR-IILDE---PKAHK------SVLD-MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       143 ~~~-~~~~~---~~~~~------~i~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      ... ....+   .....      .... ..++.+....+....++.+.+.+-...+.   +.  ..+++..++.||++++
T Consensus       156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~--~~~~i~~iavSpng~~  230 (410)
T PF04841_consen  156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID--SDGPIIKIAVSPNGKF  230 (410)
T ss_pred             cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc--CCCCeEEEEECCCCCE
Confidence            111 11111   11000      0000 22333444444444455555443322111   11  2347999999999997


Q ss_pred             ceEEEEEEeCCcceEEEEEccCceEeeeeecc-CCCcEEEEEcCCCC
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGK  257 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~  257 (301)
                           ++.-..+|.+.+....-.+.+..+... ......+.|.-+..
T Consensus       231 -----iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  231 -----IALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             -----EEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence                 344446788888876555554444433 34566777766543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.06  E-value=0.0003  Score=61.12  Aligned_cols=137  Identities=15%  Similarity=0.139  Sum_probs=82.3

Q ss_pred             ccEEEEEecCCCcEEEEEe------CCC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEE-------EEE
Q 022184          155 KSVLDMDFSLDSEFLATTS------TDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC-------TVQ  219 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~------~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~  219 (301)
                      ..+.+.+++|+|+.++...      .|.  .+.+++. .+.. ..+...  .......|+|+|..++++.       +..
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence            3678899999999887665      243  4555554 2222 333322  2377889999988643221       111


Q ss_pred             eCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEE---EeCCCceeecc-----ccccccCccE
Q 022184          220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV---VDVKKMEINHW-----SKRLHLGTSI  291 (301)
Q Consensus       220 ~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i---~~~~~~~~~~~-----~~~~~~~~~v  291 (301)
                      ....+.+.+.+++.++...   .....|..+.|||||..++... +++|++   -....++ ...     +...- ...+
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l-~~~~  499 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGL-GDTA  499 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeeccc-CCcc
Confidence            1233455555665544332   3356799999999999888876 477777   5545554 221     11112 3346


Q ss_pred             EEEEEccCCC
Q 022184          292 ALVEFCPTQR  301 (301)
Q Consensus       292 ~~~~~spdg~  301 (301)
                      .++.|.++++
T Consensus       500 ~~l~W~~~~~  509 (591)
T PRK13616        500 VSLDWRTGDS  509 (591)
T ss_pred             ccceEecCCE
Confidence            8899988863

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.05  E-value=0.0026  Score=54.65  Aligned_cols=201  Identities=12%  Similarity=0.069  Sum_probs=113.3

Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCe--eEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ--KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  152 (301)
                      +..++.++.++.+.-.|.++++...+....... ......+  ..+... ++..++.++.++.|+-+|.++++.+.+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~-~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPA-DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCc-cccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            445666777888999998888765543321110 0000011  111111 225788888899999999999998766543


Q ss_pred             CCcc--EEEEEecC--CCcEEEEEe---------CCCcEEEEeCCCCceEEEEeecCCCC-------------------e
Q 022184          153 AHKS--VLDMDFSL--DSEFLATTS---------TDGSARIWKTEDGVAWTFLTRNSDEK-------------------I  200 (301)
Q Consensus       153 ~~~~--i~~~~~~~--~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~-------------------v  200 (301)
                      ....  -..+.-+|  .+..++.++         .++.+..+|..+|+.+-.+.......                   +
T Consensus       139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v  218 (488)
T cd00216         139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS  218 (488)
T ss_pred             CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence            2210  01111122  123444443         36789999999999877665421110                   0


Q ss_pred             -eEEEEccCCCcceEEEEEEeCCc------------------ceEEEEEccCceEeeeeeccCCCc------EEEEEc--
Q 022184          201 -ELCRFSKDGTKPFLFCTVQRGDK------------------ALLAVYDISTWNKIGHKRLLRKPA------SVLSIS--  253 (301)
Q Consensus       201 -~~~~~~~~~~~~~~~~~~~~~~~------------------~~i~~~d~~~~~~~~~~~~~~~~v------~~~~~s--  253 (301)
                       ...++.+.+..     ++.+..+                  +.|.-+|.++++.+-.........      ....+.  
T Consensus       219 w~~pa~d~~~g~-----V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~  293 (488)
T cd00216         219 WASPTYDPKTNL-----VYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI  293 (488)
T ss_pred             cCCeeEeCCCCE-----EEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec
Confidence             12333333443     2333333                  379999999998875443221111      111111  


Q ss_pred             --CCCC---EEEEeeCCCcEEEEeCCCceeeccc
Q 022184          254 --LDGK---YLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       254 --~~~~---~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                        -++.   .+++++.+|.+..+|.++++.+-..
T Consensus       294 ~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         294 KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             cccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence              1333   6788889999999999999877543

The alignment model contains an 8-bladed beta-propeller.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.01  E-value=0.0022  Score=49.09  Aligned_cols=211  Identities=13%  Similarity=0.102  Sum_probs=117.3

Q ss_pred             cceEEEECCCCC-eEEEEecCCc-EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-----CCeEE
Q 022184           65 DPMTIAVNPSGD-DFVCSTTNGG-CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLR  137 (301)
Q Consensus        65 ~v~~~~~~~~~~-~l~~~~~d~~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~  137 (301)
                      .-..|+|+|... -++.+-+-|+ ..++|..+.+............+-     -.-.|||||.+|...-.     .|.|-
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfy-----GHGvfs~dG~~LYATEndfd~~rGViG  143 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFY-----GHGVFSPDGRLLYATENDFDPNRGVIG  143 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceee-----cccccCCCCcEEEeecCCCCCCCceEE
Confidence            345688888544 4555555554 567888877665444332221111     12379999998876543     37899


Q ss_pred             EEeCCCc-ceecccccCCccEEEEEecCCCcEEEEEeC------------------CCcEEEEeCCCCceEEEEeec---
Q 022184          138 IMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTST------------------DGSARIWKTEDGVAWTFLTRN---  195 (301)
Q Consensus       138 v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------d~~i~i~d~~~~~~~~~~~~~---  195 (301)
                      |||.+.+ +.+-.+..|.-....+.|.+||+.++.+..                  .-++.+.|..+|+.+.+...+   
T Consensus       144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l  223 (366)
T COG3490         144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL  223 (366)
T ss_pred             EEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence            9998743 334455555556678999999998887642                  112444454555544433222   


Q ss_pred             CCCCeeEEEEccCCCcceEEEEEEeCCcce-EEEEEccCceEeeeee-------ccCCCcEEEEEcCCCCEEEEeeCC-C
Q 022184          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTWNKIGHKR-------LLRKPASVLSISLDGKYLAMGSKD-G  266 (301)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~d-~  266 (301)
                      +...++.++..+||.. ++.+-.-+..+.. -.+=-...++++..+.       ...+.|-+++.+.+..+++..+-. +
T Consensus       224 ~~lSiRHld~g~dgtv-wfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN  302 (366)
T COG3490         224 RQLSIRHLDIGRDGTV-WFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN  302 (366)
T ss_pred             hhcceeeeeeCCCCcE-EEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence            1224677777777774 1111111111111 0011111222222221       122456778887766666666554 4


Q ss_pred             cEEEEeCCCceeecc
Q 022184          267 DICVVDVKKMEINHW  281 (301)
Q Consensus       267 ~i~i~~~~~~~~~~~  281 (301)
                      ...+||..++..+..
T Consensus       303 ~~vi~da~tG~vv~~  317 (366)
T COG3490         303 RAVIWDAATGAVVSE  317 (366)
T ss_pred             eEEEEEcCCCcEEec
Confidence            677999999987654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.00  E-value=0.0034  Score=47.41  Aligned_cols=123  Identities=11%  Similarity=0.002  Sum_probs=83.1

Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  154 (301)
                      ..+++.|+..+.+.--|.+++....+...        ..++.+-+.- -|++++.|+..|.+++.+.++|.....+....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il--------g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--------GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh--------CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence            34667777788888888877765333221        1222222221 46789999999999999999997766654332


Q ss_pred             ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEcc
Q 022184          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  207 (301)
                      .-=......+++..+..++.|++.+..|.++..++...+.+.. ...+-+..|
T Consensus        94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~-~f~sP~i~~  145 (354)
T KOG4649|consen   94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG-TFVSPVIAP  145 (354)
T ss_pred             hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc-eeccceecC
Confidence            2111234567899999999999999999999998888664432 233445566

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.98  E-value=0.00064  Score=60.33  Aligned_cols=133  Identities=15%  Similarity=0.084  Sum_probs=82.2

Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-------CCEEEEeecCCeEEEEeCCCcc-eeccc----
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-------GSRFAAGGVDGHLRIMHWPSLR-IILDE----  150 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------~~~l~~~~~dg~i~v~d~~~~~-~~~~~----  150 (301)
                      ....|+-.|++.++........      ...+|..  +.|+       ...-+.|-.+..+..||.+-.. .+...    
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~------~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVH------DDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecC------CCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            3467888888887763222111      1122333  3332       3345667778899999987532 22111    


Q ss_pred             ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       151 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                      ........|++-+.+| +||.|+.+|.||+||- .++...+....-+.+|..+..+.||+++     ++ ..+..|.+++
T Consensus       574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwi-----la-Tc~tyLlLi~  645 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWI-----LA-TCKTYLLLID  645 (794)
T ss_pred             cccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEE-----EE-eecceEEEEE
Confidence            1222367777777666 7999999999999994 4444333333446789999999999982     22 3345677776


Q ss_pred             c
Q 022184          231 I  231 (301)
Q Consensus       231 ~  231 (301)
                      .
T Consensus       646 t  646 (794)
T PF08553_consen  646 T  646 (794)
T ss_pred             E
Confidence            4

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.98  E-value=0.0029  Score=51.24  Aligned_cols=209  Identities=11%  Similarity=0.089  Sum_probs=111.1

Q ss_pred             CCceeEEEeeeecCC----CccEEEecCCccccC----CcCceeEeeeCCCc---ceeeeCCceeccccccCCcceEEEE
Q 022184            3 GGGTVTCGSWIKRPE----NVNLVVLGKSSRASS----SPSVLEIFSFDPKT---TSVYTSPLVTYVFDESEGDPMTIAV   71 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~----~~~~~~~g~~~~~~~----~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~   71 (301)
                      ....++|++-..-+.    ...++++|++.....    ..|.+.++.+....   ..+  ....   -....++|++++-
T Consensus        22 ~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l--~~i~---~~~~~g~V~ai~~   96 (321)
T PF03178_consen   22 PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL--KLIH---STEVKGPVTAICS   96 (321)
T ss_dssp             TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE--EEEE---EEEESS-EEEEEE
T ss_pred             CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE--EEEE---EEeecCcceEhhh
Confidence            344566655544222    257888888633321    22778888887641   111  1111   1234788999887


Q ss_pred             CCCCCeEEEEecCCcEEEEEEcCCc-cccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC-cceecc
Q 022184           72 NPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILD  149 (301)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~~~~  149 (301)
                      - ++ +|+++ ..+.|.+|++...+ .....      .  ...++...+....++++++|.....+.++.++. ...+..
T Consensus        97 ~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~------~--~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~  165 (321)
T PF03178_consen   97 F-NG-RLVVA-VGNKLYVYDLDNSKTLLKKA------F--YDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLIL  165 (321)
T ss_dssp             E-TT-EEEEE-ETTEEEEEEEETTSSEEEEE------E--E-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEE
T ss_pred             h-CC-EEEEe-ecCEEEEEEccCcccchhhh------e--ecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEE
Confidence            6 34 45554 45779999998877 21111      1  112223344444567999999888888886543 221222


Q ss_pred             cc--cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------C--ceEEEEeecCCCCeeEE---EEccC--CCcc-
Q 022184          150 EP--KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-------G--VAWTFLTRNSDEKIELC---RFSKD--GTKP-  212 (301)
Q Consensus       150 ~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~--~~~~~~~~~~~~~v~~~---~~~~~--~~~~-  212 (301)
                      +.  .....++++.+-++++.++.+..+|.+.++....       +  +.......+.+..|+++   .+.|.  +... 
T Consensus       166 va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~  245 (321)
T PF03178_consen  166 VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESP  245 (321)
T ss_dssp             EEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TT
T ss_pred             EEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCccc
Confidence            21  1234688888887667999999999999998763       2  22333334445567777   54552  2210 


Q ss_pred             eEEEEEEeCCcceEE
Q 022184          213 FLFCTVQRGDKALLA  227 (301)
Q Consensus       213 ~~~~~~~~~~~~~i~  227 (301)
                      ....++.++.+|.|.
T Consensus       246 ~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  246 NRPQILYGTVDGSIG  260 (321)
T ss_dssp             EEEEEEEEETTS-EE
T ss_pred             ccceEEEEecCCEEE
Confidence            011134455666666

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.94  E-value=0.0012  Score=43.22  Aligned_cols=101  Identities=19%  Similarity=0.214  Sum_probs=66.6

Q ss_pred             EEEEEecC---CC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184          157 VLDMDFSL---DS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (301)
Q Consensus       157 i~~~~~~~---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  232 (301)
                      |+++++..   || +.|++|+.|..|++|+-  .+.+..+...  ..+..+.-...++      ++.+-.+|+|-+|+..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~--~~v~~L~~~~~~~------F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET--DKVTSLCSLGGGR------FAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc--cceEEEEEcCCCE------EEEEecCCEEEEEeCc
Confidence            45666544   43 47999999999999984  4666666644  3588887777766      4667789999999863


Q ss_pred             CceEeeeeeccCCCcEEEEE-cCC--C-CEEEEeeCCCcEEE
Q 022184          233 TWNKIGHKRLLRKPASVLSI-SLD--G-KYLAMGSKDGDICV  270 (301)
Q Consensus       233 ~~~~~~~~~~~~~~v~~~~~-s~~--~-~~l~~~~~d~~i~i  270 (301)
                      .  .+-..+. +..+.++.+ ..+  | +-|++|-.+|+|-+
T Consensus        72 ~--RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   72 Q--RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             c--eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            3  2222332 333555554 333  3 47888888887753

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.93  E-value=0.0045  Score=50.16  Aligned_cols=184  Identities=14%  Similarity=0.189  Sum_probs=103.3

Q ss_pred             CCeEEEEec----------CCcEEEEEEcCC-ccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184           75 GDDFVCSTT----------NGGCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (301)
Q Consensus        75 ~~~l~~~~~----------d~~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~  143 (301)
                      ..+|+.|..          .|.|.++++... ....++.  ........++|++++-- ++ .|+++. ++.|.+|++..
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~--~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~  116 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK--LIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDN  116 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE--EEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEET
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEE--EEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccC
Confidence            457776643          288999999884 1101111  11112245778888765 44 455444 58899999987


Q ss_pred             cceecccccC--CccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEE-eecCCCCeeEEEEccCCCcceEEEEEE
Q 022184          144 LRIILDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       144 ~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                      .+.+......  ...+.++...  +++++.|..-..+.++..+. ...+..+ .......+.++.|-++++.     ++.
T Consensus       117 ~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~-----~i~  189 (321)
T PF03178_consen  117 SKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDT-----IIV  189 (321)
T ss_dssp             TSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE-----EEE
T ss_pred             cccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcE-----EEE
Confidence            7722222222  2356666555  56899998888888775543 2323333 2333445888888877754     677


Q ss_pred             eCCcceEEEEEccCc---------eE--eeeeeccCCCcEEE---EEcC--CC------CEEEEeeCCCcEEEE
Q 022184          220 RGDKALLAVYDISTW---------NK--IGHKRLLRKPASVL---SISL--DG------KYLAMGSKDGDICVV  271 (301)
Q Consensus       220 ~~~~~~i~~~d~~~~---------~~--~~~~~~~~~~v~~~---~~s~--~~------~~l~~~~~d~~i~i~  271 (301)
                      +..+|.+.++.....         +.  ...+. ....|+++   ++.|  .+      ..++.++.+|.|...
T Consensus       190 ~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  190 GDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            888999999887531         11  12222 23556766   5455  22      248888899988844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00320 WD40 WD40 repeats

Probab=97.88  E-value=6.1e-05  Score=38.96  Aligned_cols=38  Identities=34%  Similarity=0.458  Sum_probs=32.5

Q ss_pred             eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      +....+..+...+.++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34455667778899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.88  E-value=0.0006  Score=44.50  Aligned_cols=100  Identities=13%  Similarity=0.164  Sum_probs=64.8

Q ss_pred             ceEEEECC---CC-CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC
Q 022184           66 PMTIAVNP---SG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (301)
Q Consensus        66 v~~~~~~~---~~-~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~  141 (301)
                      |+++++..   +| +.|++|+.|..|++|+-+.-.          ..+.....|.++.-... ..++.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~----------~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV----------AEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE----------EEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            55666644   33 489999999999999854321          12223466777776665 57999999999999985


Q ss_pred             CCcceecccccCCccEEEEEecC---CCc-EEEEEeCCCcEE
Q 022184          142 PSLRIILDEPKAHKSVLDMDFSL---DSE-FLATTSTDGSAR  179 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~---~~~-~l~~~~~d~~i~  179 (301)
                      .  +.+...... ..+.++++..   ||. .|++|-.+|.|-
T Consensus        71 ~--~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   71 S--QRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             c--ceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3  233333322 3355655543   333 688888888764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.86  E-value=0.0082  Score=47.44  Aligned_cols=123  Identities=13%  Similarity=0.090  Sum_probs=73.9

Q ss_pred             CCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc--
Q 022184           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE--  150 (301)
Q Consensus        73 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--  150 (301)
                      ..++.|+.|+.+| +.+++.........        ......|..+...|+-+.+++-+ |+.++++++.........  
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~--------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~   74 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR--------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP   74 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcccee--------EeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence            4678999998888 99999933322111        11233489999999777776665 599999998754433211  


Q ss_pred             ------------ccCCccEEEEE--ecCCCcEEEEEeCCCcEEEEeCCCC-----ceEEEEeecCCCCeeEEEEcc
Q 022184          151 ------------PKAHKSVLDMD--FSLDSEFLATTSTDGSARIWKTEDG-----VAWTFLTRNSDEKIELCRFSK  207 (301)
Q Consensus       151 ------------~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~~  207 (301)
                                  ......+..++  -...+...+......+|.+|.....     +....+..+  ..+..++|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~~  148 (275)
T PF00780_consen   75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFLG  148 (275)
T ss_pred             ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEeC
Confidence                        11122444444  1123333444444568888887653     344555433  4578888883

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.86  E-value=0.0085  Score=47.68  Aligned_cols=162  Identities=14%  Similarity=0.121  Sum_probs=95.7

Q ss_pred             CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCC-eeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec--ccc-
Q 022184           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--DEP-  151 (301)
Q Consensus        76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~-  151 (301)
                      +.+.+-+.||++.-..+..............  .....+ ...-++...+..++.-+.+|.|+-.|+.......  ... 
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F--~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~  225 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVF--DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL  225 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEES--STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeecccc--CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence            4677888999999999984433222221111  112222 2344555566667667889999988876543211  000 


Q ss_pred             -c--------CCccEEEEEecCCCcEEEEEeC---CC-------cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc
Q 022184          152 -K--------AHKSVLDMDFSLDSEFLATTST---DG-------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (301)
Q Consensus       152 -~--------~~~~i~~~~~~~~~~~l~~~~~---d~-------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (301)
                       .        ..+.-.-+++++..+.|+..-.   ++       .|.++|+.+++.+..+...+  ++.++..+.+.+= 
T Consensus       226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P-  302 (342)
T PF06433_consen  226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKP-  302 (342)
T ss_dssp             S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS--
T ss_pred             cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCc-
Confidence             0        0123445788876555444321   11       48899999999999988643  4789999988764 


Q ss_pred             eEEEEEEeCCcceEEEEEccCceEeeeeeccC
Q 022184          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (301)
Q Consensus       213 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  244 (301)
                      .+  .+....++.|.+||..+++.++.+....
T Consensus       303 ~L--~~~~~~~~~l~v~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  303 LL--YALSAGDGTLDVYDAATGKLVRSIEQLG  332 (342)
T ss_dssp             EE--EEEETTTTEEEEEETTT--EEEEE---S
T ss_pred             EE--EEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence            22  2344568899999999999887776543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.86  E-value=0.0083  Score=48.67  Aligned_cols=180  Identities=13%  Similarity=0.069  Sum_probs=89.1

Q ss_pred             EEEEeeCCCEEEEeec---CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe
Q 022184          117 CLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (301)
Q Consensus       117 ~~~~s~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  193 (301)
                      .=+|.+||+.|+.++.   ...+++.|+.+++..+-............++|+.+.++-...+..++-.|+++.+....+.
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            3477889987776654   4567888999888754433322333356678888887766666789999999988766555


Q ss_pred             ecCCCCeeEEEEc--cCCCcceEEEEEEeC-------------------CcceEEEEEccCceEeeeeeccCCCcEEEEE
Q 022184          194 RNSDEKIELCRFS--KDGTKPFLFCTVQRG-------------------DKALLAVYDISTWNKIGHKRLLRKPASVLSI  252 (301)
Q Consensus       194 ~~~~~~v~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  252 (301)
                      .+.. .+....|.  .++..  ++.+....                   ..+.|.-.|+.+++... +......+..+.|
T Consensus       120 ~p~~-~~g~gt~v~n~d~t~--~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~-v~~~~~wlgH~~f  195 (386)
T PF14583_consen  120 VPDD-WKGYGTWVANSDCTK--LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV-VFEDTDWLGHVQF  195 (386)
T ss_dssp             --TT-EEEEEEEEE-TTSSE--EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE-EEEESS-EEEEEE
T ss_pred             CCcc-cccccceeeCCCccE--EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE-EEecCccccCccc
Confidence            4433 34445554  34443  22222222                   22456777888876543 3334667888999


Q ss_pred             cCCC-CEEEEeeC------CCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          253 SLDG-KYLAMGSK------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       253 s~~~-~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ||.. ..|+.|-+      |.+|-+.+.............. ...+..=-|.|||.
T Consensus       196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~  250 (386)
T PF14583_consen  196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGS  250 (386)
T ss_dssp             ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS
T ss_pred             CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCC
Confidence            9965 44554422      2244444443333222221222 44566666777774

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.81  E-value=0.015  Score=48.96  Aligned_cols=206  Identities=15%  Similarity=0.093  Sum_probs=105.3

Q ss_pred             EEEECCCCCeEEEEecCC-----------cEEEEEEcCCccccccccccCCCCCCCCC-eeEEEEeeCCCEEEEeec---
Q 022184           68 TIAVNPSGDDFVCSTTNG-----------GCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGGV---  132 (301)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~-----------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~---  132 (301)
                      .+.|.++++.|+....+.           .|+.|.+.+......+.-..    ..... ...+..++|+++|+....   
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~----~~~~~~~~~~~~s~d~~~l~i~~~~~~  249 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE----PDEPFWFVSVSRSKDGRYLFISSSSGT  249 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-----TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee----cCCCcEEEEEEecCcccEEEEEEEccc
Confidence            399999999877665433           25666665544321121111    11122 567888999999876432   


Q ss_pred             C-CeEEEEeCCCc----ceecccccCCccEEEEEecCCCcEEEEEe---CCCcEEEEeCCCCce---EEEEeecCCCCee
Q 022184          133 D-GHLRIMHWPSL----RIILDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVA---WTFLTRNSDEKIE  201 (301)
Q Consensus       133 d-g~i~v~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~---~~~~~~~~~~~v~  201 (301)
                      + ..+.+.++..+    .....+......+....-+..+.+++...   ..+.|...++.....   ...+..+ ...+.
T Consensus       250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~-~~~~~  328 (414)
T PF02897_consen  250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE-DEDVS  328 (414)
T ss_dssp             SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEE
T ss_pred             cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC-CCcee
Confidence            3 45788888764    12223333333333322222444444433   235677777776552   2233333 22233


Q ss_pred             EEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec-cCCCcEEEEEcCCCCEEEEe--eC--CCcEEEEeCCCc
Q 022184          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMG--SK--DGDICVVDVKKM  276 (301)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~--~~--d~~i~i~~~~~~  276 (301)
                      -..+...+.+++  ....-.....|.++|+..+.....+.. ..+.+..+...+++..+...  +.  -+.+.-||+.++
T Consensus       329 l~~~~~~~~~Lv--l~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~  406 (414)
T PF02897_consen  329 LEDVSLFKDYLV--LSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG  406 (414)
T ss_dssp             EEEEEEETTEEE--EEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEEEEEECCEEE--EEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            334445555533  234455567899999993333333333 23445666656666544333  21  267899999988


Q ss_pred             eeec
Q 022184          277 EINH  280 (301)
Q Consensus       277 ~~~~  280 (301)
                      +...
T Consensus       407 ~~~~  410 (414)
T PF02897_consen  407 ELTL  410 (414)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            7644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00320 WD40 WD40 repeats

Probab=97.78  E-value=6.8e-05  Score=38.76  Aligned_cols=36  Identities=28%  Similarity=0.552  Sum_probs=30.6

Q ss_pred             ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEe
Q 022184          147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK  182 (301)
Q Consensus       147 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  182 (301)
                      ...+..+...|.++.|++++..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            344455667899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.74  E-value=0.0054  Score=47.71  Aligned_cols=148  Identities=18%  Similarity=0.135  Sum_probs=91.0

Q ss_pred             CeeEEEEeeCCCEEEEee---cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEe-CCCCceE
Q 022184          114 PQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK-TEDGVAW  189 (301)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~  189 (301)
                      .+...+++++++.++...   ....++++...  ....... ....+....|++++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678899999999887665   33455555543  3222222 223778889999987777666666666663 3333322


Q ss_pred             -EEEeecCCC-CeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc---Cc--e----EeeeeeccCCCcEEEEEcCCCCE
Q 022184          190 -TFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---TW--N----KIGHKRLLRKPASVLSISLDGKY  258 (301)
Q Consensus       190 -~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~---~~--~----~~~~~~~~~~~v~~~~~s~~~~~  258 (301)
                       ......... .|..+.+||||..+.+  +.....++.|.+--+.   .+  .    ...........+..+.|.+++.+
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~--v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAV--VVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEE--EEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence             222222111 6999999999998433  4555556778776543   22  1    11112223457899999999987


Q ss_pred             EEEeeCCC
Q 022184          259 LAMGSKDG  266 (301)
Q Consensus       259 l~~~~~d~  266 (301)
                      ++.+...+
T Consensus       180 ~V~~~~~~  187 (253)
T PF10647_consen  180 VVLGRSAG  187 (253)
T ss_pred             EEEeCCCC
Confidence            77775543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA02713 hypothetical protein; Provisional

Probab=97.68  E-value=0.0091  Score=52.17  Aligned_cols=222  Identities=14%  Similarity=0.116  Sum_probs=110.0

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC------CcEEEEEEcCCccccccccccCCCCCC
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------~~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      .++.|++....+...+.    +...... .+++. -++..++.|+.+      ..+..||..++.-.      ....+..
T Consensus       273 ~v~~yd~~~~~W~~l~~----mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~------~~~~m~~  340 (557)
T PHA02713        273 CILVYNINTMEYSVIST----IPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHV------ELPPMIK  340 (557)
T ss_pred             CEEEEeCCCCeEEECCC----CCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEe------eCCCCcc
Confidence            45677777766543221    1111111 12222 256666777653      34667777665321      1222211


Q ss_pred             CCCeeEEEEeeCCCEEEEeecCC-----eEEEEeCCCcceec--ccccCCccEEEEEecCCCcEEEEEeCCC--------
Q 022184          112 AGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDG--------  176 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg-----~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------  176 (301)
                      .. -......-+++..+.|+.++     .+..||..+.+-..  .+.........+.  -+++..+.|+.++        
T Consensus       341 ~R-~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~  417 (557)
T PHA02713        341 NR-CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVH  417 (557)
T ss_pred             hh-hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccc
Confidence            11 11122233677778888653     47889987654321  2211111111222  2577777777542        


Q ss_pred             ---------------cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc------ceEEEEEccC--
Q 022184          177 ---------------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK------ALLAVYDIST--  233 (301)
Q Consensus       177 ---------------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~d~~~--  233 (301)
                                     .+..||.++.+-...-..... ........-+++ +|    +.|+.+      ..+..||.++  
T Consensus       418 ~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~-IY----v~GG~~~~~~~~~~ve~Ydp~~~~  491 (557)
T PHA02713        418 HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDD-IY----VVCDIKDEKNVKTCIFRYNTNTYN  491 (557)
T ss_pred             ccccccccccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCE-EE----EEeCCCCCCccceeEEEecCCCCC
Confidence                           467788776544322111111 111111122333 22    223322      3467899876  


Q ss_pred             -ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeeccc
Q 022184          234 -WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG--DICVVDVKKMEINHWS  282 (301)
Q Consensus       234 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~  282 (301)
                       ++.+..+.........+.+  +++..++|+.++  .+..||..+.+.....
T Consensus       492 ~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~  541 (557)
T PHA02713        492 GWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHIC  541 (557)
T ss_pred             CeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchh
Confidence             4444444333333333333  788899999888  7888999887766543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.0012  Score=59.64  Aligned_cols=149  Identities=9%  Similarity=-0.069  Sum_probs=94.1

Q ss_pred             CcceEEEECCCCCeEEEEe--cCCcEEEEEEcCCcccccccccc----CCCCCCCCCeeEEEEeeCC-CEEEEeecCCeE
Q 022184           64 GDPMTIAVNPSGDDFVCST--TNGGCKLFEVYGGATDINLLAKK----MPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHL  136 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~--~d~~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i  136 (301)
                      -++..+...+|+...++..  .+-.|..||++.-..........    ...+.......++.|+|.- ...+....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            4566777778877555443  34478899987654422211111    1111223456788999853 335667779999


Q ss_pred             EEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee---cCCCCeeEEEEccCCCcce
Q 022184          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTKPF  213 (301)
Q Consensus       137 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~  213 (301)
                      ++..+................++++|+|.|+.++.|-..|++.-|... .+....+..   .....|.++.|-....++.
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            988775443333322344578999999999999999999999888653 332333322   1235789999988776533

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.59  E-value=0.012  Score=45.17  Aligned_cols=192  Identities=13%  Similarity=0.117  Sum_probs=110.6

Q ss_pred             EEECCCCCeEEEEecC-----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-----------
Q 022184           69 IAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------  132 (301)
Q Consensus        69 ~~~~~~~~~l~~~~~d-----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------  132 (301)
                      =.|||||.+|...-.|     |.|-|||...+-...      -+...|.-....+.|.+||+.++.+..           
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv------gE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~  192 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV------GEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRT  192 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEeccccccee------cccccCCcCcceeEEecCCcEEEEeCCceecccccCcc
Confidence            3589999999876443     789999987543211      111123345577899999999887742           


Q ss_pred             -------CCeEEEEeCCCcceecccc----cCCccEEEEEecCCCcEEEEEeCCCc-----EEEEeCCCCceEEEEeecC
Q 022184          133 -------DGHLRIMHWPSLRIILDEP----KAHKSVLDMDFSLDSEFLATTSTDGS-----ARIWKTEDGVAWTFLTRNS  196 (301)
Q Consensus       133 -------dg~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~  196 (301)
                             .-++.+.|..+++.+.+..    .++-.|..++..+||+.++-+-..|.     -.+=-.+.++.+.-+....
T Consensus       193 ~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pe  272 (366)
T COG3490         193 ELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPE  272 (366)
T ss_pred             ccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCH
Confidence                   1123444545555443322    23347888888888876665533221     1111122333333332221


Q ss_pred             ------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEE
Q 022184          197 ------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV  270 (301)
Q Consensus       197 ------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i  270 (301)
                            ...|-+++.+.+...+    .+++-..+...+||..++..+......+  ...++  +...-+++.+.+|.+.+
T Consensus       273 e~~~~~anYigsiA~n~~~glV----~lTSP~GN~~vi~da~tG~vv~~a~l~d--aaGva--~~~~gf~vssg~G~~~~  344 (366)
T COG3490         273 EQTAAFANYIGSIAANRRDGLV----ALTSPRGNRAVIWDAATGAVVSEAALPD--AAGVA--AAKGGFAVSSGQGRIIF  344 (366)
T ss_pred             HHHHHHHhhhhheeecccCCeE----EEecCCCCeEEEEEcCCCcEEecccccc--cccce--eccCceEEecCCceEEe
Confidence                  1235667777655542    5666677788999999998765433221  22222  33444666677888888


Q ss_pred             EeCC
Q 022184          271 VDVK  274 (301)
Q Consensus       271 ~~~~  274 (301)
                      +.-.
T Consensus       345 ~s~~  348 (366)
T COG3490         345 YSRA  348 (366)
T ss_pred             cccc
Confidence            8543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.53  E-value=0.039  Score=47.90  Aligned_cols=199  Identities=11%  Similarity=0.085  Sum_probs=112.2

Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCC---CC-CeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD---AG-PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~---~~-~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  150 (301)
                      +..++.++.++.|+-+|.++++...+...........   .. .-..+++  .+..++.++.|+.+.-+|.++|+.+.+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4466666777888888888877655433211100000   00 0011222  2346777888999999999999987654


Q ss_pred             ccCC-ccEEEEEecC---CCcEEEEEe------CCCcEEEEeCCCCceEEEEeecCCC----------------------
Q 022184          151 PKAH-KSVLDMDFSL---DSEFLATTS------TDGSARIWKTEDGVAWTFLTRNSDE----------------------  198 (301)
Q Consensus       151 ~~~~-~~i~~~~~~~---~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~----------------------  198 (301)
                      .... ..-..+.-+|   ++. ++.+.      .+|.|..+|.++|+.+-.+......                      
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~  225 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG  225 (527)
T ss_pred             ccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence            3211 1001111122   444 44443      2688999999999887654321110                      


Q ss_pred             --------Ce-eEEEEccCCCcceEEEEEEeC----------C----cceEEEEEccCceEeeeeeccCCCc--------
Q 022184          199 --------KI-ELCRFSKDGTKPFLFCTVQRG----------D----KALLAVYDISTWNKIGHKRLLRKPA--------  247 (301)
Q Consensus       199 --------~v-~~~~~~~~~~~~~~~~~~~~~----------~----~~~i~~~d~~~~~~~~~~~~~~~~v--------  247 (301)
                              .+ ..+++.|....+|   +-++.          .    ...|.-.|+++++..-.++...+.+        
T Consensus       226 ~~~~~gg~~~W~~~s~D~~~~lvy---~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~  302 (527)
T TIGR03075       226 DAWKTGGGATWGTGSYDPETNLIY---FGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE  302 (527)
T ss_pred             CccccCCCCccCceeEcCCCCeEE---EeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence                    01 1234555444422   22221          0    1267788999998865554432221        


Q ss_pred             -EEEEEcCCCC---EEEEeeCCCcEEEEeCCCceee
Q 022184          248 -SVLSISLDGK---YLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       248 -~~~~~s~~~~---~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                       .-+.+..+|+   .++.+..+|.+++.|..+++.+
T Consensus       303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence             1223334665   7889999999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.52  E-value=0.03  Score=44.45  Aligned_cols=153  Identities=16%  Similarity=0.202  Sum_probs=80.1

Q ss_pred             ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEe
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d  140 (301)
                      .-.+.+..+.-+++|++++++.......-|+.-  +.......+     .....|..|.|+|++.+.+.+ ..|.|+.=+
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~~r-----~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPHNR-----NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE-------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEEcc-----CccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            335678889999999988887655544455532  211111111     134689999999998876655 788888877


Q ss_pred             C-CCcceecc----cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee--cCCCCeeEEEEccCCCcce
Q 022184          141 W-PSLRIILD----EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRFSKDGTKPF  213 (301)
Q Consensus       141 ~-~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~  213 (301)
                      . ...+.-..    .....-.+.+++|.++++..++++. |. .+.....|+.-.....  ......+.+.|.+..+   
T Consensus       214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~---  288 (302)
T PF14870_consen  214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK---  288 (302)
T ss_dssp             -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTE---
T ss_pred             CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccceECccccCCCCceEEEEEcCCCc---
Confidence            2 22222111    1112235899999998887776654 43 3455566666555543  2233478888887655   


Q ss_pred             EEEEEEeCCcceEEEE
Q 022184          214 LFCTVQRGDKALLAVY  229 (301)
Q Consensus       214 ~~~~~~~~~~~~i~~~  229 (301)
                         .+.-+.+|.|.-|
T Consensus       289 ---gf~lG~~G~ll~~  301 (302)
T PF14870_consen  289 ---GFVLGQDGVLLRY  301 (302)
T ss_dssp             ---EEEE-STTEEEEE
T ss_pred             ---eEEECCCcEEEEe
Confidence               3556778777655

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.0034  Score=52.13  Aligned_cols=144  Identities=10%  Similarity=0.037  Sum_probs=86.4

Q ss_pred             CCCCeEE-EEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC-------EEEEeecCCeEEEEeCCCc
Q 022184           73 PSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-------RFAAGGVDGHLRIMHWPSL  144 (301)
Q Consensus        73 ~~~~~l~-~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~v~d~~~~  144 (301)
                      .+.+.|+ ++.....++-.|++.++....-        .....|.-+.+.|+.+       .-+.|-.+..|.-||.+-.
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEW--------k~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~  414 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEW--------KFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ  414 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEe--------eccCCcceeeccCCcchhcccccccEEeecCCceEEeccccc
Confidence            3444444 3334455788888877652211        1122355566666543       1244667888999998743


Q ss_pred             ce-ec-ccccCC----ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184          145 RI-IL-DEPKAH----KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       145 ~~-~~-~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      .. .. ..+.++    ....|++-..+| +++.|+.+|.|++||- .+....+....-+.+|..+..+.+|++      +
T Consensus       415 ~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKw------i  486 (644)
T KOG2395|consen  415 GKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKW------I  486 (644)
T ss_pred             CcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcE------E
Confidence            22 11 111111    245555555444 8999999999999996 555444444455668999999999997      2


Q ss_pred             EeCCcceEEEEEcc
Q 022184          219 QRGDKALLAVYDIS  232 (301)
Q Consensus       219 ~~~~~~~i~~~d~~  232 (301)
                      .+..+..+.+.++.
T Consensus       487 l~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  487 LATCKTYLLLIDTL  500 (644)
T ss_pred             EEecccEEEEEEEe
Confidence            23345566666653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.50  E-value=0.071  Score=48.22  Aligned_cols=207  Identities=14%  Similarity=0.082  Sum_probs=115.4

Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEee----------------CCCEEEEeecCCeEE
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSV----------------DGSRFAAGGVDGHLR  137 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~----------------~~~~l~~~~~dg~i~  137 (301)
                      +..++.++.++.|.-.|.++++...+.......... .....+.+++-.                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456666677777888888777765554322111000 001122333321                345788888899999


Q ss_pred             EEeCCCcceecccccCCccE-------------EEEEecC--CCcEEEEEeC----------CCcEEEEeCCCCceEEEE
Q 022184          138 IMHWPSLRIILDEPKAHKSV-------------LDMDFSL--DSEFLATTST----------DGSARIWKTEDGVAWTFL  192 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~  192 (301)
                      -.|.++|+.+..+.. .+.+             ..+.-.|  .+..++.++.          +|.|+-+|.++|+.+-.+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999988755421 1111             1111122  1334555532          588999999999987766


Q ss_pred             eecCC--------C--------Ce-eEEEEccCCCcceEEEE-------------EEeCCcceEEEEEccCceEeeeeec
Q 022184          193 TRNSD--------E--------KI-ELCRFSKDGTKPFLFCT-------------VQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       193 ~~~~~--------~--------~v-~~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      .....        +        .+ ...++.+....+|+-..             ......+.|.-.|.++++..-.++.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            42110        0        00 12344444433221100             0001235677788888887654443


Q ss_pred             cCCC---------cEEEEEcC-CCC---EEEEeeCCCcEEEEeCCCceeeccc
Q 022184          243 LRKP---------ASVLSISL-DGK---YLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       243 ~~~~---------v~~~~~s~-~~~---~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      ..+.         ..-+.+.. +|+   .++.++.+|.++++|.++++.+...
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            2221         11122333 563   7999999999999999999877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.49  E-value=0.023  Score=42.43  Aligned_cols=136  Identities=17%  Similarity=0.106  Sum_probs=80.0

Q ss_pred             ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC-------CCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-------EKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (301)
                      .+..+-..+|+|++++-.-.|-.- .+....+....-+..|+-       ...+.++|+.+.+..|    ...+.+-.|.
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY----~iDsln~~V~  183 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFY----YIDSLNYEVD  183 (310)
T ss_pred             cccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEE----EEccCceEEe
Confidence            356667788999985433332111 222222222222222221       2345788998877632    4556677787


Q ss_pred             EEE--ccCceE-----eeeeec----cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEE
Q 022184          228 VYD--ISTWNK-----IGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       228 ~~d--~~~~~~-----~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~  296 (301)
                      -||  ..++..     +..++.    .....-.++...+|++.++.-..++|..+|..+|+.+..+. .. ...|++++|
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik-lP-t~qitsccF  261 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK-LP-TPQITSCCF  261 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE-cC-CCceEEEEe
Confidence            777  555432     111111    01122345667788888888888999999999999988874 34 677999988


Q ss_pred             c
Q 022184          297 C  297 (301)
Q Consensus       297 s  297 (301)
                      -
T Consensus       262 g  262 (310)
T KOG4499|consen  262 G  262 (310)
T ss_pred             c
Confidence            4

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.0024  Score=53.01  Aligned_cols=145  Identities=14%  Similarity=0.110  Sum_probs=98.6

Q ss_pred             eCCCEE-EEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCc--E-----EEEEeCCCcEEEEeCCCCce--EEE
Q 022184          122 VDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE--F-----LATTSTDGSARIWKTEDGVA--WTF  191 (301)
Q Consensus       122 ~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~-----l~~~~~d~~i~i~d~~~~~~--~~~  191 (301)
                      .+.++| ..+.....++-.|++.|+.+....-+.. |.-+.+.|+.+  .     -+.|-.|..|.-||.|-...  +..
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            344444 4455567788899999998877655544 77778888654  2     23455788899999884332  222


Q ss_pred             Eeec---CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcE
Q 022184          192 LTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI  268 (301)
Q Consensus       192 ~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i  268 (301)
                      ...+   ......|.+-..+|.      ++.++.+|.|++||.-.......+.+...+|..+..+.+|++|++.+. ..+
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG~------IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyL  494 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESGY------IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYL  494 (644)
T ss_pred             eeccccccccccceeeecCCce------EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEE
Confidence            1211   122355666666666      689999999999997433334456778899999999999999887764 566


Q ss_pred             EEEeCC
Q 022184          269 CVVDVK  274 (301)
Q Consensus       269 ~i~~~~  274 (301)
                      .+.++.
T Consensus       495 lLi~t~  500 (644)
T KOG2395|consen  495 LLIDTL  500 (644)
T ss_pred             EEEEEe
Confidence            666653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.44  E-value=0.066  Score=46.51  Aligned_cols=166  Identities=13%  Similarity=0.054  Sum_probs=95.6

Q ss_pred             EEEEeeCCCEEEEeecC-----C-----------eEEEEeCCCcceecccccCCccE---------EEEEecCCCc---E
Q 022184          117 CLSFSVDGSRFAAGGVD-----G-----------HLRIMHWPSLRIILDEPKAHKSV---------LDMDFSLDSE---F  168 (301)
Q Consensus       117 ~~~~s~~~~~l~~~~~d-----g-----------~i~v~d~~~~~~~~~~~~~~~~i---------~~~~~~~~~~---~  168 (301)
                      .+++.|+..+++.+..+     +           .|.-.|+++|+....++..+..+         .-+....+|+   .
T Consensus       238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~  317 (527)
T TIGR03075       238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL  317 (527)
T ss_pred             ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence            34666666666665421     2           67777889998866554432222         1223334666   6


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEee------------cCCCCe----------------------------eEEEEccC
Q 022184          169 LATTSTDGSARIWKTEDGVAWTFLTR------------NSDEKI----------------------------ELCRFSKD  208 (301)
Q Consensus       169 l~~~~~d~~i~i~d~~~~~~~~~~~~------------~~~~~v----------------------------~~~~~~~~  208 (301)
                      ++.+.++|.+.+.|-++++.+...+.            ....++                            ..++++|+
T Consensus       318 v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~  397 (527)
T TIGR03075       318 LAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPK  397 (527)
T ss_pred             EEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCC
Confidence            77899999999999999987622100            000000                            12456665


Q ss_pred             CCcceEEEEEE----------------------------eCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEE
Q 022184          209 GTKPFLFCTVQ----------------------------RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (301)
Q Consensus       209 ~~~~~~~~~~~----------------------------~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  260 (301)
                      ...+|+-..-.                            ...-+.|.-+|+.+++..-............ ..-.+.+++
T Consensus       398 ~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf  476 (527)
T TIGR03075       398 TGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVF  476 (527)
T ss_pred             CCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEE
Confidence            55433211000                            0113568888888887664433221111121 122455777


Q ss_pred             EeeCCCcEEEEeCCCceeecccc
Q 022184          261 MGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       261 ~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      .++.+|.++.+|.++|+.+....
T Consensus       477 ~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       477 YGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             EECCCCeEEEEECCCCCEeEEEe
Confidence            88889999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.00077  Score=60.35  Aligned_cols=102  Identities=9%  Similarity=0.078  Sum_probs=76.1

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC
Q 022184          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (301)
Q Consensus       165 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  244 (301)
                      .+..++.|+..|.+...|++..-.......+..++|++++|+.+|..     ++.|-.+|.|.+||+..++.++.+..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~-----l~~G~~~G~V~v~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSL-----LLAGLGDGHVTVWDMHRAKILKVITEHG  172 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCce-----eccccCCCcEEEEEccCCcceeeeeecC
Confidence            46678999999999999987642211222344568999999999997     7888899999999999999888888777


Q ss_pred             CCcEEEE---EcCCCCEEEEeeCCCcEEEEeC
Q 022184          245 KPASVLS---ISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       245 ~~v~~~~---~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                      .+.+.+-   +..++..++++..-|.  +|++
T Consensus       173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            7666543   4445567777777675  5554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.42  E-value=0.00076  Score=36.79  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=29.9

Q ss_pred             CCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce
Q 022184          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  146 (301)
                      ...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457899999999999999999999999998 5544

>PRK10115 protease 2; Provisional

Probab=97.38  E-value=0.098  Score=47.11  Aligned_cols=113  Identities=6%  Similarity=-0.072  Sum_probs=69.9

Q ss_pred             CeeEEEEeeCCCEEEEeec-----CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC------CcEEEEe
Q 022184          114 PQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWK  182 (301)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d  182 (301)
                      .+..+.|+||+++|+.+..     ...|++.|+.+++.+........  ..++|.+|++.|+....+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4677889999998887632     34688999988864322222212  459999999866655432      3577888


Q ss_pred             CCCC--ceEEEEeecCCCCee-EEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184          183 TEDG--VAWTFLTRNSDEKIE-LCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (301)
Q Consensus       183 ~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  231 (301)
                      +.++  +....+..... ... ....+.++++++  .-.....++.+.+++.
T Consensus       206 lgt~~~~d~lv~~e~~~-~~~~~~~~s~d~~~l~--i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDD-TFYVSLHKTTSKHYVV--IHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCC-CEEEEEEEcCCCCEEE--EEEECCccccEEEEEC
Confidence            8877  33334433222 233 333344777643  3455556678999984

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.34  E-value=0.037  Score=41.38  Aligned_cols=136  Identities=14%  Similarity=0.177  Sum_probs=84.4

Q ss_pred             CCcceEEEECCCCCeEEEEecC---------CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEE-eec
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGV  132 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d---------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~  132 (301)
                      +.+.+.-..+|+|++++-.-.|         |.++.|-....-.  ..       ...-.--+.++|+.+.+.+.. -+.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~--~i-------~~~v~IsNgl~Wd~d~K~fY~iDsl  178 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVE--LI-------WNCVGISNGLAWDSDAKKFYYIDSL  178 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCce--ee-------ehhccCCccccccccCcEEEEEccC
Confidence            5567777889999985532222         3344443321110  00       011123367899987776654 455


Q ss_pred             CCeEEEEe--CCCcce-----eccccc----CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCee
Q 022184          133 DGHLRIMH--WPSLRI-----ILDEPK----AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE  201 (301)
Q Consensus       133 dg~i~v~d--~~~~~~-----~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~  201 (301)
                      +-+|.-||  ..+|..     +..+..    .+...-.++...+|++.+++-..++|...|..+|+.+..+..+.. .++
T Consensus       179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~-qit  257 (310)
T KOG4499|consen  179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP-QIT  257 (310)
T ss_pred             ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC-ceE
Confidence            77787777  555432     222222    111233455666888888888899999999999999999988765 599


Q ss_pred             EEEEccC
Q 022184          202 LCRFSKD  208 (301)
Q Consensus       202 ~~~~~~~  208 (301)
                      +++|--.
T Consensus       258 sccFgGk  264 (310)
T KOG4499|consen  258 SCCFGGK  264 (310)
T ss_pred             EEEecCC
Confidence            9999644

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.32  E-value=0.001  Score=36.31  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=29.4

Q ss_pred             CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      ...|..++|+|...+||.++.+|.|.+|.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            456899999999999999999999999999 444

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.29  E-value=0.019  Score=48.64  Aligned_cols=125  Identities=7%  Similarity=0.026  Sum_probs=73.1

Q ss_pred             cccCCcceEEEECCC----CCeEEEEecCCcEEEEEEcCCcccc-ccccccCCCCCCCC--CeeEEEEeeCCCEEEEeec
Q 022184           60 DESEGDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATDI-NLLAKKMPPLQDAG--PQKCLSFSVDGSRFAAGGV  132 (301)
Q Consensus        60 ~~h~~~v~~~~~~~~----~~~l~~~~~d~~i~~w~~~~~~~~~-~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~  132 (301)
                      -|....|..+.|.|-    ...|++......|.+|.+....... +........+...-  -...+.|+|....|++-..
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence            355667999999984    3356666677889999996322211 11110111111111  1256889998887776655


Q ss_pred             CCeEEEEeCCCcc-eecccccCCccEEEEEecCCCcEEEEEeCC-CcEEEEeCC
Q 022184          133 DGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTSTD-GSARIWKTE  184 (301)
Q Consensus       133 dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~i~d~~  184 (301)
                      ...-.+++++... .+..-....+.|.|.+|.+||+.|+.+-.. =.-++||-.
T Consensus       133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            4433445554322 222222556789999999999987765432 245677743

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.28  E-value=0.00088  Score=49.42  Aligned_cols=142  Identities=15%  Similarity=0.114  Sum_probs=85.0

Q ss_pred             EEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEE-EE
Q 022184          127 FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC-RF  205 (301)
Q Consensus       127 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~  205 (301)
                      +..-+.+|.|+-++++..+...........-..  ...-+..++.|+.+|.|.+|..................+.+. .-
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~--v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQR--VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhccee--ecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            334455777777776544332221111111111  112345789999999999998763211111111111122222 22


Q ss_pred             ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-CCcEEEEEcCCCCEEEEe--eCCCcEEEEeCCC
Q 022184          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMG--SKDGDICVVDVKK  275 (301)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~--~~d~~i~i~~~~~  275 (301)
                      -.++..     ..++..++.|+.|+..-.+.+.....|+ .++..+..+..+++++.+  +.|..++.|++..
T Consensus       111 ~~~~~~-----~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  111 GRDSSL-----GCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccce-----eEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            223333     6888999999999999888877777777 666777777777788887  7888888888864

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.27  E-value=0.038  Score=43.66  Aligned_cols=147  Identities=14%  Similarity=0.166  Sum_probs=86.5

Q ss_pred             CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE----------
Q 022184          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL----------  192 (301)
Q Consensus       123 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----------  192 (301)
                      .++.|+.|+++| +.++++......... .....|..+...|+-+.|++-+ |+.+.++++..-......          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            577899999888 899998332222222 2223499999999877777665 499999998764433311          


Q ss_pred             ---eecCCCCeeEEE-EccCCCcceEEEEEEeCCcceEEEEEccCc-----eEeeeeeccCCCcEEEEEcCCCCEEEEee
Q 022184          193 ---TRNSDEKIELCR-FSKDGTKPFLFCTVQRGDKALLAVYDISTW-----NKIGHKRLLRKPASVLSISLDGKYLAMGS  263 (301)
Q Consensus       193 ---~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  263 (301)
                         .......+...+ -........+   +.+ ....|.+|.....     +...++.. ...+..++|.  ++.++.|.
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L---~va-~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRL---CVA-VKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEE---EEE-ECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEe
Confidence               111111233333 1122222121   222 2337888776542     33344433 4678899998  55777776


Q ss_pred             CCCcEEEEeCCCceeec
Q 022184          264 KDGDICVVDVKKMEINH  280 (301)
Q Consensus       264 ~d~~i~i~~~~~~~~~~  280 (301)
                      .+ ...+.|+.++....
T Consensus       156 ~~-~f~~idl~~~~~~~  171 (275)
T PF00780_consen  156 SK-GFYLIDLNTGSPSE  171 (275)
T ss_pred             CC-ceEEEecCCCCceE
Confidence            54 58888988765443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.23  E-value=0.093  Score=43.67  Aligned_cols=95  Identities=17%  Similarity=0.185  Sum_probs=58.5

Q ss_pred             EEEECCCCCeEEEEecCCcEEE---EEEcCCc-cccccccccCCCCCCC--CCeeEEEEee-----------CCCEEEEe
Q 022184           68 TIAVNPSGDDFVCSTTNGGCKL---FEVYGGA-TDINLLAKKMPPLQDA--GPQKCLSFSV-----------DGSRFAAG  130 (301)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~~---w~~~~~~-~~~~~~~~~~~~~~~~--~~v~~~~~s~-----------~~~~l~~~  130 (301)
                      .++.+|+++.|+.+..+..+.+   |+..... ........-...+.+.  ..|+++.|-|           |...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4677899999999877765554   4332211 1111111111222222  4666666644           35678999


Q ss_pred             ecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184          131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus       131 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      ..+|.|++|.- +|..+..-.-|..+|..+...
T Consensus        86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence            99999999985 676666656677788777764

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.0019  Score=57.95  Aligned_cols=102  Identities=25%  Similarity=0.300  Sum_probs=75.0

Q ss_pred             CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC
Q 022184           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (301)
Q Consensus        74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  153 (301)
                      .+-.++.++..|.+-..|+.+.-..      ........++|.+++|+.+|+.++.|-.+|.|.+||+..++..+.+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~------~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP------LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch------hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            4557888888899988888765221      1122234589999999999999999999999999999998887776655


Q ss_pred             Ccc---EEEEEecCCCcEEEEEeCCCcEEEEeC
Q 022184          154 HKS---VLDMDFSLDSEFLATTSTDGSARIWKT  183 (301)
Q Consensus       154 ~~~---i~~~~~~~~~~~l~~~~~d~~i~i~d~  183 (301)
                      ..+   +..+.+..++..++++...|.  +|.+
T Consensus       172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            544   444555666667888877776  4544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.21  E-value=0.023  Score=48.22  Aligned_cols=116  Identities=10%  Similarity=0.086  Sum_probs=72.9

Q ss_pred             CCeeEEEEeeC----CCEEEEeecCCeEEEEeCC-----CcceecccccCC-c----cEEEEEecCCCcEEEEEeCCCcE
Q 022184          113 GPQKCLSFSVD----GSRFAAGGVDGHLRIMHWP-----SLRIILDEPKAH-K----SVLDMDFSLDSEFLATTSTDGSA  178 (301)
Q Consensus       113 ~~v~~~~~s~~----~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~~~~-~----~i~~~~~~~~~~~l~~~~~d~~i  178 (301)
                      ..|..+.|.|-    ...+++......|.||-+.     +++.......+- .    --..+.|+|....|+.-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            56899999993    2245556667889999874     222221111110 0    12457799998888877665555


Q ss_pred             EEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (301)
Q Consensus       179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  232 (301)
                      .+++++.............+.|.|.+|.+||+++.    ++.+..=.-++||-.
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV----VAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV----VAVGSSLHSYIWDSA  186 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE----EEeCCeEEEEEecCc
Confidence            66676654444444444556799999999999853    333445566788754

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.19  E-value=0.03  Score=43.40  Aligned_cols=120  Identities=12%  Similarity=0.101  Sum_probs=86.2

Q ss_pred             ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       151 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                      .+....+.++.|+|+.+.|++......-.++=...|+.+.++....-.....+.+..++.+     .++.-.++.+.++.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f-----vi~dER~~~l~~~~  156 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF-----VIVDERDRALYLFT  156 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEE-----EEEehhcceEEEEE
Confidence            3444569999999999988888777776677667888888886544344677888888886     57777788888877


Q ss_pred             ccCceEe----------eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          231 ISTWNKI----------GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       231 ~~~~~~~----------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      +.....+          ......+.....++|+|..+.|..+-+-+-+.||.+..
T Consensus       157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence            6544221          11111245678899999998888888777777777653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.18  E-value=0.05  Score=41.92  Aligned_cols=118  Identities=21%  Similarity=0.128  Sum_probs=79.9

Q ss_pred             cEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          156 SVLDMDFSLDSEFLATTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      -...+.|..++.++-+.+.-|  .|+.+|+.+++.......+...--..++...+  .++    .-.-.++...+||..+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~----qLTWk~~~~f~yd~~t  119 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLY----QLTWKEGTGFVYDPNT  119 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEE----EEESSSSEEEEEETTT
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEE----EEEecCCeEEEEcccc
Confidence            456788877888888887665  69999999999887776655444455555544  222    3345688999999999


Q ss_pred             ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      .+.+..+.-. ..-+.++  .|++.|+.......++++|..+.+....+
T Consensus       120 l~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i  165 (264)
T PF05096_consen  120 LKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI  165 (264)
T ss_dssp             TEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred             ceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEE
Confidence            9888777554 4456776  46777777777789999999887655544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=97.16  E-value=0.0011  Score=58.47  Aligned_cols=210  Identities=14%  Similarity=0.122  Sum_probs=115.8

Q ss_pred             cccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcC--CccccccccccCCCCCCCCCeeEEEEee---CCCEEEEee
Q 022184           58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGG  131 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~  131 (301)
                      .+++..+.|..+.|.. +-..++  ..-|.+.+|+++-  ++....+........  ...+.-+.|.|   +.-++..+-
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~--gs~~~~V~wcp~~~~~~~ic~~~  202 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPY--GSDPQLVSWCPIAVNKVYICYGL  202 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcC--CCCcceeeecccccccceeeecc
Confidence            4567778888888844 223333  2336799999864  222222222111111  12334445544   667788888


Q ss_pred             cCCeEEEEeCCCcceecccccCCccEEEE-----------EecCCCcEEEEEeCCCcEEEEeCC-----CCceEEEEeec
Q 022184          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDM-----------DFSLDSEFLATTSTDGSARIWKTE-----DGVAWTFLTRN  195 (301)
Q Consensus       132 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~~  195 (301)
                      .++++++.++++... ..+..|...+..+           ..+|||+.|+....||.++.|.+.     .-.++...+.|
T Consensus       203 ~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph  281 (1283)
T KOG1916|consen  203 KGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH  281 (1283)
T ss_pred             CCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence            899999988765433 2222343333332           268999999999999998888753     23344455555


Q ss_pred             CCCCeeEEEEccCCCc-----ceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCE------------
Q 022184          196 SDEKIELCRFSKDGTK-----PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY------------  258 (301)
Q Consensus       196 ~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~------------  258 (301)
                      .+.+-.|.-|..+-..     .+.+.+.+...+..+++|....++++  +...-..+..+. -++++.            
T Consensus       282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~  358 (1283)
T KOG1916|consen  282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTR  358 (1283)
T ss_pred             CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHH
Confidence            4343333223322111     12333556666778999988877765  222223344443 223321            


Q ss_pred             EEEeeCCCcEEEEeCCC
Q 022184          259 LAMGSKDGDICVVDVKK  275 (301)
Q Consensus       259 l~~~~~d~~i~i~~~~~  275 (301)
                      ++..+-++.|.+|.-+.
T Consensus       359 ~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  359 LVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             HHHhhhHHHHHHhhcch
Confidence            23345567777776443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.03  E-value=0.1  Score=40.55  Aligned_cols=191  Identities=10%  Similarity=0.052  Sum_probs=114.1

Q ss_pred             cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (301)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  139 (301)
                      .+-...+.++.|+|+.+.|.+......-.++=...++...++...      .-...-.+.|.-++.+.++--.++.+.++
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~------g~~DpE~Ieyig~n~fvi~dER~~~l~~~  155 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT------GFSDPETIEYIGGNQFVIVDERDRALYLF  155 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc------ccCChhHeEEecCCEEEEEehhcceEEEE
Confidence            344556999999999998888777765556555555553333211      22334557787777777776678888888


Q ss_pred             eCCCcceecc----------cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE---eecC------CCCe
Q 022184          140 HWPSLRIILD----------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---TRNS------DEKI  200 (301)
Q Consensus       140 d~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~------~~~v  200 (301)
                      .+........          ..........++|.|....|..+=.-.-+.||...........   ..+.      -..+
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            7654422111          1112457889999998888888777677777766533211111   1110      0136


Q ss_pred             eEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC---------CCcEEEEEcCCCCEEEE
Q 022184          201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLAM  261 (301)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~  261 (301)
                      .++.|.+....+    ++-+.+++.+.-.|.... .+..+..++         .....++..++|.+.++
T Consensus       236 Sgl~~~~~~~~L----LVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         236 SGLEFNAITNSL----LVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             ccceecCCCCcE----EEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence            778888776653    466677777877776543 333332221         12345777777654333

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.02  E-value=0.21  Score=43.97  Aligned_cols=238  Identities=19%  Similarity=0.209  Sum_probs=116.2

Q ss_pred             ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC------CcEEEEEE
Q 022184           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN------GGCKLFEV   92 (301)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------~~i~~w~~   92 (301)
                      ..++++||.......-..++  .+++....+....    .+. +...-.+++.. ++...++|+.|      .++..||.
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve--~yd~~~~~w~~~a----~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVE--CYDPKTNEWSSLA----PMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CeEEEECCCCCCCcccceeE--EecCCcCcEeecC----CCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecC
Confidence            45777887654212223344  4555554443211    111 12223344443 45677888888      35666776


Q ss_pred             cCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe-----EEEEeCCCcceecccccCCccEEEEEe-cCCC
Q 022184           93 YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH-----LRIMHWPSLRIILDEPKAHKSVLDMDF-SLDS  166 (301)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~  166 (301)
                      ..++-  ..    ...+.....-.+++ .-+|.+.++|+.||.     +-.||..+.+-...-. ........+. .-+|
T Consensus       357 ~~~~W--~~----~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g  428 (571)
T KOG4441|consen  357 RTNQW--TP----VAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGG  428 (571)
T ss_pred             CCCce--ec----cCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECC
Confidence            66552  11    12221111111111 227888889988864     6677776554321111 1111122222 1257


Q ss_pred             cEEEEEeCCC------cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc-----eEEEEEccCce
Q 022184          167 EFLATTSTDG------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----LLAVYDISTWN  235 (301)
Q Consensus       167 ~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~d~~~~~  235 (301)
                      ...+.|+.++      ++..||..+.+....-.......-..++.- ++..     .+.||.++     +|..||..+.+
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~i-----YvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKI-----YVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEE-----EEECCccCCCccceEEEEcCCCCc
Confidence            8888888554      477888877654333222111111222222 2222     24555444     37778877654


Q ss_pred             E--eeeeeccCCCcEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCceeec
Q 022184          236 K--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKMEINH  280 (301)
Q Consensus       236 ~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~i~~~~~~~~~~  280 (301)
                      -  +.........+....+  +++..++|+.||     +|..||..+.+...
T Consensus       503 W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~  552 (571)
T KOG4441|consen  503 WTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTWTE  552 (571)
T ss_pred             eeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCceee
Confidence            3  2222222223222222  577888888775     58888887765443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.95  E-value=0.17  Score=41.85  Aligned_cols=190  Identities=17%  Similarity=0.177  Sum_probs=88.2

Q ss_pred             ceEEEECCCCCeEEEEec--C----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee--------
Q 022184           66 PMTIAVNPSGDDFVCSTT--N----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--------  131 (301)
Q Consensus        66 v~~~~~~~~~~~l~~~~~--d----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------  131 (301)
                      ...+..-|+|+.++++-.  +    |-+.+.|-++.+...+-...    ......-+.+-|.|..+.+++..        
T Consensus       132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~----~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~  207 (461)
T PF05694_consen  132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKD----RGPQPFGYDFWYQPRHNVMISSEWGAPSMFE  207 (461)
T ss_dssp             EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-----TT------EEEETTTTEEEE-B---HHHHT
T ss_pred             CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccC----CCCCCCCCCeEEcCCCCEEEEeccCChhhcc
Confidence            445556688988887632  2    45666665544432211110    01123346778888777777753        


Q ss_pred             ------------cCCeEEEEeCCCcceecccccCC--ccEEEEEec--CCCcE-EEEEeCCCcEEEEeC-CCCceEE---
Q 022184          132 ------------VDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFS--LDSEF-LATTSTDGSARIWKT-EDGVAWT---  190 (301)
Q Consensus       132 ------------~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~--~~~~~-l~~~~~d~~i~i~d~-~~~~~~~---  190 (301)
                                  ...++.+||+.+.+.++.+.-..  .....+.|.  |+..+ ++.+.-.++|..|-- +.++-..   
T Consensus       208 ~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kV  287 (461)
T PF05694_consen  208 KGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKV  287 (461)
T ss_dssp             T---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEE
T ss_pred             cCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEE
Confidence                        24689999999998877765443  235566664  44444 444444455554433 4443211   


Q ss_pred             -EEeec--------C--------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce---Eeeeeec--------
Q 022184          191 -FLTRN--------S--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKRL--------  242 (301)
Q Consensus       191 -~~~~~--------~--------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~--------  242 (301)
                       .+...        .        ..-++.+..|.|.+++|    ++.-..|.|+.||+....   ...+...        
T Consensus       288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY----vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~  363 (461)
T PF05694_consen  288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY----VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGD  363 (461)
T ss_dssp             EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE----EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B-
T ss_pred             EECCCcccCcccccccccccccCCCceEeEEEccCCCEEE----EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCC
Confidence             11100        0        23478999999999854    556678999999987532   2222211        


Q ss_pred             --------cCCCcEEEEEcCCCCEEEEee
Q 022184          243 --------LRKPASVLSISLDGKYLAMGS  263 (301)
Q Consensus       243 --------~~~~v~~~~~s~~~~~l~~~~  263 (301)
                              ..+...-+..|.||+.|++.+
T Consensus       364 ~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  364 HPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -TTS------S----EEE-TTSSEEEEE-
T ss_pred             CccccccccCCCCCeEEEccCCeEEEEEe
Confidence                    112346788999999888765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.93  E-value=0.051  Score=47.50  Aligned_cols=109  Identities=17%  Similarity=0.111  Sum_probs=71.9

Q ss_pred             EEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc-cCCccEEEEEec--CCCcEEEEEeCCCcEEEEeCC---------
Q 022184          117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFS--LDSEFLATTSTDGSARIWKTE---------  184 (301)
Q Consensus       117 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~~~~~d~~i~i~d~~---------  184 (301)
                      -+.-|.-++..++-+....+.|||.+.+....... ...+.|.+++|.  |+++.+++.+....|.+|...         
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            33444445544454556789999998877543322 346789999995  589999999999999998642         


Q ss_pred             CCceEEEE--eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184          185 DGVAWTFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (301)
Q Consensus       185 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  232 (301)
                      +...+..+  ..+.+.+|.+..|.++|..      +.+. ++++.++|-.
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~L------vV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTL------VVGS-GNQLFVFDKW  156 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeE------EEEe-CCEEEEECCC
Confidence            11223332  2334457899999999984      3222 4578888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.93  E-value=0.12  Score=39.84  Aligned_cols=175  Identities=14%  Similarity=0.179  Sum_probs=108.7

Q ss_pred             eeEEEEeeCCCEEEEeecCC--eEEEEeCCCcceecccccCCc-cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 022184          115 QKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (301)
Q Consensus       115 v~~~~~s~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  191 (301)
                      ...+.|..++.++-+.+.-|  .|+.+|+.+++......-... --..++.. +++...-.=.++...+||..+-+.+.+
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence            46788878887777776554  799999999887544332221 12334444 234444455788999999999998888


Q ss_pred             EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-----CCcEEEEEcCCCCEEEEeeCCC
Q 022184          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKDG  266 (301)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d~  266 (301)
                      +.-..+  -..++  .+++.     ++.+.....|..+|..+.+....+....     ..++.+.|- +|...|=.=...
T Consensus       126 ~~y~~E--GWGLt--~dg~~-----Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td  195 (264)
T PF05096_consen  126 FPYPGE--GWGLT--SDGKR-----LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD  195 (264)
T ss_dssp             EE-SSS----EEE--ECSSC-----EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred             EecCCc--ceEEE--cCCCE-----EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence            875543  35555  56666     5666667799999998877665554332     245667775 566555555667


Q ss_pred             cEEEEeCCCceeecccc-----c---c-c----cCccEEEEEEccCC
Q 022184          267 DICVVDVKKMEINHWSK-----R---L-H----LGTSIALVEFCPTQ  300 (301)
Q Consensus       267 ~i~i~~~~~~~~~~~~~-----~---~-~----~~~~v~~~~~spdg  300 (301)
                      .|...|..+|+....+.     .   . .    ...-.+.+||.|++
T Consensus       196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~  242 (264)
T PF05096_consen  196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET  242 (264)
T ss_dssp             EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT
T ss_pred             eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC
Confidence            88889999988765431     0   0 0    02458899998875

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.88  E-value=0.15  Score=40.02  Aligned_cols=231  Identities=14%  Similarity=0.106  Sum_probs=121.3

Q ss_pred             cceEEEECCCCCeEEEEecCCcEEEEEEcCC-----ccccccccccCCCCCCCCCeeEEEEeeCCC------------EE
Q 022184           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG-----ATDINLLAKKMPPLQDAGPQKCLSFSVDGS------------RF  127 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~------------~l  127 (301)
                      ....|+++|.+.+-++....+...+||....     ....................+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            3678999998877777777788999998722     111111110001111234567788875333            35


Q ss_pred             EEeecCCeEEEEeCCCcce-----ecccccC-Ccc-EEEEEecC--CCcEEEEEe-CCCcEEEEeCCCCceEEEEeecCC
Q 022184          128 AAGGVDGHLRIMHWPSLRI-----ILDEPKA-HKS-VLDMDFSL--DSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSD  197 (301)
Q Consensus       128 ~~~~~dg~i~v~d~~~~~~-----~~~~~~~-~~~-i~~~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~  197 (301)
                      +.+++||+|.-|...-...     ...+... ... -..+++..  .+.+|..+. ..++|.+||-.-.+..  +.....
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~--~~g~F~  181 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP--LPGSFI  181 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc--CCCCcc
Confidence            7788999999998532221     1111111 122 33455543  345555444 6789999985432211  110000


Q ss_pred             CCeeEEEEcc-----CCCcceEEE---------EEEeCCcceEEEEEccCceEeeeeecc--CCCcEEEEEcC------C
Q 022184          198 EKIELCRFSK-----DGTKPFLFC---------TVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISL------D  255 (301)
Q Consensus       198 ~~v~~~~~~~-----~~~~~~~~~---------~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~s~------~  255 (301)
                      .+-.-..|.|     -+..+|+..         -+.+..-|.|.+||+. ++.++++...  -...+.++..|      .
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence            0000001111     011111111         1334445789999986 4555544321  24557777766      3


Q ss_pred             CCEEEEeeCCCcEEEEeCCCceeeccccccc----cCccEEEEEEcc
Q 022184          256 GKYLAMGSKDGDICVVDVKKMEINHWSKRLH----LGTSIALVEFCP  298 (301)
Q Consensus       256 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~----~~~~v~~~~~sp  298 (301)
                      +.+|+---.||+|..||..+++.+-.+....    .....+.++|..
T Consensus       261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            5566665679999999999887665553222    012356666654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK10115 protease 2; Provisional

Probab=96.87  E-value=0.33  Score=43.86  Aligned_cols=197  Identities=10%  Similarity=0.013  Sum_probs=101.0

Q ss_pred             CcceEEEECCCCCeEEEEecC-----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC-----
Q 022184           64 GDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----  133 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d-----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----  133 (301)
                      -.+..+.|+|+|++|+.+...     -.|++.|+.++....       ..+....  ..++|++|++.|+....+     
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-------~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~  197 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-------ELLDNVE--PSFVWANDSWTFYYVRKHPVTLL  197 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-------ccccCcc--eEEEEeeCCCEEEEEEecCCCCC
Confidence            347778999999988866432     357788887664211       1111111  459999999877766442     


Q ss_pred             -CeEEEEeCCCc--ceecccccCCccEE-EEEecCCCcEEEEEe---CCCcEEEEeCC--CCceEEEEeecCCCCeeEEE
Q 022184          134 -GHLRIMHWPSL--RIILDEPKAHKSVL-DMDFSLDSEFLATTS---TDGSARIWKTE--DGVAWTFLTRNSDEKIELCR  204 (301)
Q Consensus       134 -g~i~v~d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~---~d~~i~i~d~~--~~~~~~~~~~~~~~~v~~~~  204 (301)
                       ..|+.+++.++  +....+........ .+..+.++++++..+   .++.+.+++..  .+.....+..... ....+.
T Consensus       198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~  276 (686)
T PRK10115        198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD-HEYSLD  276 (686)
T ss_pred             CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC-CEEEEE
Confidence             36777888777  32222322222333 233344777665444   34578888853  3443333332222 222222


Q ss_pred             EccCCCcceEEEEEEe--CCcceEEEEEccCceEeeeeecc-C-CCcEEEEEcCCCCEEEEeeCCCc--EEEEeCCCc
Q 022184          205 FSKDGTKPFLFCTVQR--GDKALLAVYDISTWNKIGHKRLL-R-KPASVLSISLDGKYLAMGSKDGD--ICVVDVKKM  276 (301)
Q Consensus       205 ~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~-~-~~v~~~~~s~~~~~l~~~~~d~~--i~i~~~~~~  276 (301)
                        ..+..++   +.+.  .....|...++........+..+ . ..+..+.+.. +.++++...++.  +.+++..++
T Consensus       277 --~~~~~ly---~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~  348 (686)
T PRK10115        277 --HYQHRFY---LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR  348 (686)
T ss_pred             --eCCCEEE---EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC
Confidence              2233322   2222  33445555555521111223333 2 3677777773 345555555665  455555433

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.86  E-value=0.0087  Score=44.38  Aligned_cols=106  Identities=13%  Similarity=0.126  Sum_probs=66.9

Q ss_pred             CCCEEEEeecCCeEEEEeCCCcceecc-cccCCccEEEE-EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCe
Q 022184          123 DGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDM-DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI  200 (301)
Q Consensus       123 ~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~i~~~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v  200 (301)
                      -+..++.|+.+|.|++|.+........ .......|.++ .-..++.+..+++.|+.|+.|++.-.+.+...-.+...+.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            356789999999999999863222221 11222233332 2233556888899999999999988877666654443445


Q ss_pred             eEEEEccCCCcceEEEEEEe--CCcceEEEEEccC
Q 022184          201 ELCRFSKDGTKPFLFCTVQR--GDKALLAVYDIST  233 (301)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~  233 (301)
                      .....+..++.     +...  +.+..++.|++..
T Consensus       149 e~~ivv~sd~~-----i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVGSDEF-----LKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEecCCce-----EEeeccccchhhhhcchhh
Confidence            55555555554     3333  6677788888764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.76  E-value=0.24  Score=43.53  Aligned_cols=154  Identities=13%  Similarity=0.165  Sum_probs=82.3

Q ss_pred             cEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC-----cEEEEEEcC
Q 022184           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVYG   94 (301)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~~w~~~~   94 (301)
                      .+.++||.+.  +....-.+|.||+....+...+.  .....+.-.+  ..+  +|...|+|+.||     ++..||..+
T Consensus       334 ~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a~--M~~~R~~~~v--~~l--~g~iYavGG~dg~~~l~svE~YDp~~  405 (571)
T KOG4441|consen  334 KLYVVGGYDS--GSDRLSSVERYDPRTNQWTPVAP--MNTKRSDFGV--AVL--DGKLYAVGGFDGEKSLNSVECYDPVT  405 (571)
T ss_pred             EEEEEccccC--CCcccceEEEecCCCCceeccCC--ccCcccccee--EEE--CCEEEEEeccccccccccEEEecCCC
Confidence            4666777552  23344578888888887754221  1112122222  222  688888898886     466677665


Q ss_pred             CccccccccccCCCCCCCCCeeEEEE-eeCCCEEEEeecCC------eEEEEeCCCcceec--ccccCCccEEEEEecCC
Q 022184           95 GATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDG------HLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLD  165 (301)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg------~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~  165 (301)
                      .+-..      ...+..  ....... .-+|.+.++|+.++      ++..||..+.+...  .+........ ++.- +
T Consensus       406 ~~W~~------va~m~~--~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~  475 (571)
T KOG4441|consen  406 NKWTP------VAPMLT--RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-N  475 (571)
T ss_pred             Ccccc------cCCCCc--ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-C
Confidence            54311      111111  2222222 23777778887553      56788877655422  2211111221 2222 5


Q ss_pred             CcEEEEEeCCCc-----EEEEeCCCCceEEE
Q 022184          166 SEFLATTSTDGS-----ARIWKTEDGVAWTF  191 (301)
Q Consensus       166 ~~~l~~~~~d~~-----i~i~d~~~~~~~~~  191 (301)
                      +.+.+.|+.|+.     |..||.++.+....
T Consensus       476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  476 GKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             CEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence            778888887763     77788877665443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.71  E-value=0.14  Score=42.40  Aligned_cols=144  Identities=9%  Similarity=0.007  Sum_probs=77.2

Q ss_pred             CCeeEEEEeeCCCEEEEee-----------cCC-eEEEEeCCC--cce--ecccccCCccEEEEEecCCCcEEEEEeCCC
Q 022184          113 GPQKCLSFSVDGSRFAAGG-----------VDG-HLRIMHWPS--LRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDG  176 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~-----------~dg-~i~v~d~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  176 (301)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++.  ...+...-.....+++.+++ .++ +....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            3457789999998776642           123 677775432  221  12222223356889999988 444 34433


Q ss_pred             cEEEEeCCCC-----ceEEE---Eeec---CCCCeeEEEEccCCCcceEEEEEEeC------------------CcceEE
Q 022184          177 SARIWKTEDG-----VAWTF---LTRN---SDEKIELCRFSKDGTKPFLFCTVQRG------------------DKALLA  227 (301)
Q Consensus       177 ~i~i~d~~~~-----~~~~~---~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~------------------~~~~i~  227 (301)
                      ..++.|....     +....   +...   .......++|.|||.. |+   ..+.                  ..+.|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Yv---~~G~~~~~~~~~~~~~~~~~~~~~g~i~  167 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-YF---NHGNTLASKVTRPGTSDESRQGLGGGLF  167 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-EE---ecccCCCceeccCCCccCcccccCceEE
Confidence            3334354321     21111   2111   1223678999999974 22   1111                  114566


Q ss_pred             EEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee
Q 022184          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS  263 (301)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  263 (301)
                      -+|..+++.. .+...-.....++|+|+|+++++-.
T Consensus       168 r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       168 RYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EEecCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence            6666655432 2222223457899999998877654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.70  E-value=0.17  Score=41.90  Aligned_cols=141  Identities=12%  Similarity=0.126  Sum_probs=74.0

Q ss_pred             CcceEEEECCCCCeEEEEe-----------cCC-cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee
Q 022184           64 GDPMTIAVNPSGDDFVCST-----------TNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (301)
                      .....|+|.++|+.+++-.           ..+ .|.+++-.++.........   ..........+++.+++ +++ +.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v---fa~~l~~p~Gi~~~~~G-lyV-~~   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV---FAEELSMVTGLAVAVGG-VYV-AT   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE---eecCCCCccceeEecCC-EEE-eC
Confidence            3467899999998776642           122 6766654433221110000   00112345788998888 444 44


Q ss_pred             cCCeEEEEeCCCc-----c--eecc-ccc----CCccEEEEEecCCCcEEEEEeCC-------------------CcEEE
Q 022184          132 VDGHLRIMHWPSL-----R--IILD-EPK----AHKSVLDMDFSLDSEFLATTSTD-------------------GSARI  180 (301)
Q Consensus       132 ~dg~i~v~d~~~~-----~--~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------~~i~i  180 (301)
                      .....++.|....     +  .+.. +..    ++.....++|.|||.+.++.+..                   +.|.-
T Consensus        89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence            4443334344211     1  1111 211    12347789999999876654421                   33555


Q ss_pred             EeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      ++...++ ...+..... ....++|+|+|+.
T Consensus       169 ~~pdg~~-~e~~a~G~r-np~Gl~~d~~G~l  197 (367)
T TIGR02604       169 YNPDGGK-LRVVAHGFQ-NPYGHSVDSWGDV  197 (367)
T ss_pred             EecCCCe-EEEEecCcC-CCccceECCCCCE
Confidence            5554443 233333322 3678999999875

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.69  E-value=0.23  Score=39.61  Aligned_cols=262  Identities=15%  Similarity=0.149  Sum_probs=112.8

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccc-cCCcceEEEECCCCCeEEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~   81 (301)
                      ...+++.++|..+   ..-.++|...         .|+.-...+..+......   ... -.-...++.|..+ +.++ +
T Consensus        15 t~~~l~dV~F~d~---~~G~~VG~~g---------~il~T~DGG~tW~~~~~~---~~~~~~~~l~~I~f~~~-~g~i-v   77 (302)
T PF14870_consen   15 TDKPLLDVAFVDP---NHGWAVGAYG---------TILKTTDGGKTWQPVSLD---LDNPFDYHLNSISFDGN-EGWI-V   77 (302)
T ss_dssp             -SS-EEEEEESSS---S-EEEEETTT---------EEEEESSTTSS-EE--------S-----EEEEEEEETT-EEEE-E
T ss_pred             CCCceEEEEEecC---CEEEEEecCC---------EEEEECCCCccccccccC---CCccceeeEEEEEecCC-ceEE-E
Confidence            4568889999833   3344454421         344444444333221110   110 0223567777543 3344 4


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee-cccccCCccEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHKSVLDM  160 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~i~~~  160 (301)
                      +..+ +.+...+.++. .....  .. ..-.+....+....++..++ ++..|.|+.= .+.++.- .......+.+..+
T Consensus        78 G~~g-~ll~T~DgG~t-W~~v~--l~-~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~  150 (302)
T PF14870_consen   78 GEPG-LLLHTTDGGKT-WERVP--LS-SKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDI  150 (302)
T ss_dssp             EETT-EEEEESSTTSS--EE-------TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEE
T ss_pred             cCCc-eEEEecCCCCC-cEEee--cC-CCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeE
Confidence            4555 43444343433 22111  00 01122334444444443334 3445554432 1233321 1223334678888


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE-ccCceEeee
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD-ISTWNKIGH  239 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~~~~~~~~  239 (301)
                      .-++||++++++.......-||.-... -.........++..+.|.|++..      ......+.|+.=+ ....+.-..
T Consensus       151 ~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~l------w~~~~Gg~~~~s~~~~~~~~w~~  223 (302)
T PF14870_consen  151 TRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNL------WMLARGGQIQFSDDPDDGETWSE  223 (302)
T ss_dssp             EE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-E------EEEETTTEEEEEE-TTEEEEE--
T ss_pred             EECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCCE------EEEeCCcEEEEccCCCCcccccc
Confidence            899999999988776667788753321 22233334567999999999874      3344677888776 222222111


Q ss_pred             ----eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce---eeccccccccCccEEEEEEccC
Q 022184          240 ----KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---INHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       240 ----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~---~~~~~~~~~~~~~v~~~~~spd  299 (301)
                          .....-.+..++|.+++...++|+. |.+ +...+.|+   ......  ......+.+.|.++
T Consensus       224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~--~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  224 PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGE--NVPSNLYRIVFVNP  286 (302)
T ss_dssp             -B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGT--TSSS---EEEEEET
T ss_pred             ccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECcccc--CCCCceEEEEEcCC
Confidence                1122234788999998887777664 433 33444443   222221  11445777777554

>PHA03098 kelch-like protein; Provisional

Probab=96.69  E-value=0.37  Score=42.25  Aligned_cols=148  Identities=11%  Similarity=0.047  Sum_probs=72.4

Q ss_pred             eCCCEEEEeecC-----CeEEEEeCCCcceec--ccccCCccEEEEEecCCCcEEEEEeCC------CcEEEEeCCCCce
Q 022184          122 VDGSRFAAGGVD-----GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVA  188 (301)
Q Consensus       122 ~~~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~  188 (301)
                      -+++.++.|+.+     ..+..||..+.+...  .+....... +++ .-+++.++.|+.+      ..+..||+.+.+-
T Consensus       341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            367777888765     357778876654321  111111111 122 2256777777632      3578899876554


Q ss_pred             EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc--------ceEEEEEccCceE--eeeeeccCCCcEEEEEcCCCCE
Q 022184          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--------ALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKY  258 (301)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~  258 (301)
                      ...-..+....-.++ ...++. ++    +.|+.+        ..+.+||..+.+-  +............+.+  +++.
T Consensus       419 ~~~~~~p~~r~~~~~-~~~~~~-iy----v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i  490 (534)
T PHA03098        419 SKGSPLPISHYGGCA-IYHDGK-IY----VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKI  490 (534)
T ss_pred             eecCCCCccccCceE-EEECCE-EE----EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEE
Confidence            322111111101111 222333 22    333321        2488899876542  2222211222222223  6777


Q ss_pred             EEEeeCC-----CcEEEEeCCCceee
Q 022184          259 LAMGSKD-----GDICVVDVKKMEIN  279 (301)
Q Consensus       259 l~~~~~d-----~~i~i~~~~~~~~~  279 (301)
                      ++.|+.+     +.+.+||..+.+..
T Consensus       491 yv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        491 YVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             EEEcCCcCCcccceeEEEeCCCCEEE
Confidence            7777654     46899998877644

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.66  E-value=0.048  Score=45.31  Aligned_cols=87  Identities=13%  Similarity=0.195  Sum_probs=61.2

Q ss_pred             cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC-------------cceEEEEEEeCC
Q 022184          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-------------KPFLFCTVQRGD  222 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~~~~~~~~~~~  222 (301)
                      .+.+++.+|++++.|+...=|+|.++|+.++..++.+++-.+..+.-+.....+.             ...++.++-...
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            5788999999998888877899999999999888877765444333222221111             112333566778


Q ss_pred             cceEEEEEccCceEeeeeec
Q 022184          223 KALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       223 ~~~i~~~d~~~~~~~~~~~~  242 (301)
                      .|.|.+|.++++..+..+..
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             CCeEEEEecCCCCEEEEEEe
Confidence            89999999999887765543

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=96.61  E-value=0.57  Score=43.02  Aligned_cols=175  Identities=13%  Similarity=0.195  Sum_probs=97.2

Q ss_pred             CCCceeEEEeee---ecCC-CccEEEecCCccccCCcCceeEee------eCC---CcceeeeCCceecccc-ccCCcce
Q 022184            2 EGGGTVTCGSWI---KRPE-NVNLVVLGKSSRASSSPSVLEIFS------FDP---KTTSVYTSPLVTYVFD-ESEGDPM   67 (301)
Q Consensus         2 ~~~~~v~~~~w~---~~~~-~~~~~~~g~~~~~~~~~~~~~i~~------~~~---~~~~~~~~~~~~~~~~-~h~~~v~   67 (301)
                      +.+.||..++|.   ...+ ...++++=       ....+.|+.      ...   ....+...+....... --..+..
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-------t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~a  149 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-------TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHA  149 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-------cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccc
Confidence            567889888888   2211 12455551       334445555      111   1122222333222211 1133677


Q ss_pred             EEEECC-CCCeEEEEecCCcEEEEEEcCCccc----cccccccCCCC----CCCCCeeEEEEeeCCCEEEEeecCCeEEE
Q 022184           68 TIAVNP-SGDDFVCSTTNGGCKLFEVYGGATD----INLLAKKMPPL----QDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (301)
Q Consensus        68 ~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~----~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  138 (301)
                      .++|+| +.+.||.....|...||++......    ..........+    .....-..+.|.++.+.|++++ ...+.+
T Consensus       150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~  228 (765)
T PF10214_consen  150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLML  228 (765)
T ss_pred             eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEE
Confidence            899999 5568999999999999999322111    11110011111    1123445788988888888877 456889


Q ss_pred             EeCCCcceec--ccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCC
Q 022184          139 MHWPSLRIIL--DEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTED  185 (301)
Q Consensus       139 ~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~  185 (301)
                      +|+++.....  ........|.++.-+|... +++.. ....|...++..
T Consensus       229 ~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~  277 (765)
T PF10214_consen  229 IDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS  277 (765)
T ss_pred             EECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence            9998765522  1222335788888888622 22222 236777778766

These proteins are found in fungi.

>PHA02713 hypothetical protein; Provisional

Probab=96.58  E-value=0.16  Score=44.59  Aligned_cols=177  Identities=9%  Similarity=0.031  Sum_probs=81.8

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC-----cEEEEEEcCCccccccccccCCCCCCC
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVYGGATDINLLAKKMPPLQDA  112 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~~w~~~~~~~~~~~~~~~~~~~~~~  112 (301)
                      .++.|++....+...+.    +.........+.+  +|+..+.|+.++     .+..||..+..-..      ...+...
T Consensus       321 ~v~~Yd~~~n~W~~~~~----m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~------~~~mp~~  388 (557)
T PHA02713        321 KVYKINIENKIHVELPP----MIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKM------LPDMPIA  388 (557)
T ss_pred             eEEEEECCCCeEeeCCC----CcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEE------CCCCCcc
Confidence            56777777766543221    1111111222222  577777777653     47788877654211      1111111


Q ss_pred             CCeeEEEEeeCCCEEEEeecCC-----------------------eEEEEeCCCccee--cccccCCccEEEEEecCCCc
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDG-----------------------HLRIMHWPSLRII--LDEPKAHKSVLDMDFSLDSE  167 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg-----------------------~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~  167 (301)
                      ..-.+++ .-+++..+.|+.++                       .+..||..+.+-.  ..+....... +++ .-+++
T Consensus       389 r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~  465 (557)
T PHA02713        389 LSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDD  465 (557)
T ss_pred             cccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCE
Confidence            1111111 23677777777542                       4777887665432  2121111111 122 22577


Q ss_pred             EEEEEeCCC------cEEEEeCCC-CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc--eEEEEEccCce
Q 022184          168 FLATTSTDG------SARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWN  235 (301)
Q Consensus       168 ~l~~~~~d~------~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~  235 (301)
                      ..+.|+.++      .+..||..+ .+-...-..+.......++.. +++.     .+.|+.++  .+..||..+.+
T Consensus       466 IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~i-----yv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        466 IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTI-----MMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEE-----EEEeeecceeehhhcCccccc
Confidence            777776542      367888876 443221111111111111111 3332     35566565  56677766544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.55  E-value=0.1  Score=45.65  Aligned_cols=112  Identities=13%  Similarity=0.193  Sum_probs=72.7

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHW  141 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~  141 (301)
                      ..+.-+.-+.-++..++-+....+.|||...+...      ....+...+.|.++.|..  +++.+++.+..+.|.+|.-
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE------~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE------YEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEE------EeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            34555555555554444444568999999877631      123334568899999965  8899999999999998853


Q ss_pred             C---------Ccceecc--cccCC-ccEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 022184          142 P---------SLRIILD--EPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKT  183 (301)
Q Consensus       142 ~---------~~~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  183 (301)
                      .         +...+.+  +..+. .+|.+..|.++|..++.+  ++.+.|+|-
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            1         1111222  22223 478899999999766554  367888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.55  E-value=0.26  Score=38.44  Aligned_cols=139  Identities=19%  Similarity=0.215  Sum_probs=82.4

Q ss_pred             cceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEe-CC
Q 022184           65 DPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH-WP  142 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d-~~  142 (301)
                      .+.+.+++++++.++... .++.-.||-...+.......        ....+....|++++...+....+...+++. ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--------~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--------TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA   96 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--------cCCccccccccCCCCEEEEEcCCCceEEEEecC
Confidence            688999999999887665 23334444444333211111        123567789999988777766666666663 23


Q ss_pred             Cccee-ccc--ccCCccEEEEEecCCCcEEEEEe---CCCcEEEEeCC---CC--ceE---EEEeecCCCCeeEEEEccC
Q 022184          143 SLRII-LDE--PKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTE---DG--VAW---TFLTRNSDEKIELCRFSKD  208 (301)
Q Consensus       143 ~~~~~-~~~--~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~---~~--~~~---~~~~~~~~~~v~~~~~~~~  208 (301)
                      +++.. ...  ......|..+.++|||..++...   .++.|.+--+.   .+  ..+   ..+.......+..++|.++
T Consensus        97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen   97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            33221 111  11112899999999999887765   34666666543   22  111   1111122346889999999


Q ss_pred             CCc
Q 022184          209 GTK  211 (301)
Q Consensus       209 ~~~  211 (301)
                      +..
T Consensus       177 ~~L  179 (253)
T PF10647_consen  177 STL  179 (253)
T ss_pred             CEE
Confidence            985

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.53  E-value=0.048  Score=49.90  Aligned_cols=143  Identities=9%  Similarity=-0.101  Sum_probs=88.6

Q ss_pred             CCeeEEEEeeCCCEEEEee--cCCeEEEEeCCCcceecc-----cc------cCCccEEEEEecCCCc-EEEEEeCCCcE
Q 022184          113 GPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILD-----EP------KAHKSVLDMDFSLDSE-FLATTSTDGSA  178 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~--~dg~i~v~d~~~~~~~~~-----~~------~~~~~i~~~~~~~~~~-~l~~~~~d~~i  178 (301)
                      -++..+...+|+...++..  .+-.|..||+++......     +.      .......++.|+|.-. ..+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            3556667777876655443  344789999875432110     11      1112456788988543 46667789999


Q ss_pred             EEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee---cc-CCCcEEEEEcC
Q 022184          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LL-RKPASVLSISL  254 (301)
Q Consensus       179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~-~~~v~~~~~s~  254 (301)
                      ++..+........- .......++++|+|.|+.     ++.+...|++.-|...-. ....+.   .. ...|.+++|-.
T Consensus       181 ~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQ-----l~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQ-----LFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhcc-cCcccceeeEEeccccce-----eeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEec
Confidence            98887643322211 123345899999999998     788889999998876432 111121   11 35788999976


Q ss_pred             CCCEEEEe
Q 022184          255 DGKYLAMG  262 (301)
Q Consensus       255 ~~~~l~~~  262 (301)
                      ...++++-
T Consensus       254 t~eflvvy  261 (1405)
T KOG3630|consen  254 TQEFLVVY  261 (1405)
T ss_pred             ceeEEEEe
Confidence            66665543

>PHA03098 kelch-like protein; Provisional

Probab=96.44  E-value=0.5  Score=41.44  Aligned_cols=153  Identities=14%  Similarity=0.134  Sum_probs=72.9

Q ss_pred             cEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC-----CcEEEEEEcC
Q 022184           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYG   94 (301)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----~~i~~w~~~~   94 (301)
                      .++++||.....  ...-.+|.|++....+...+...    ........+.+  +++.++.|+.+     ..+..||..+
T Consensus       296 ~lyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~~~----~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        296 VIYFIGGMNKNN--LSVNSVVSYDTKTKSWNKVPELI----YPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             EEEEECCCcCCC--CeeccEEEEeCCCCeeeECCCCC----cccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCC
Confidence            455666543211  11125777888777664433211    11111222222  56677777765     3466777765


Q ss_pred             CccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC------CeEEEEeCCCcceec--ccccCCccEEEEEecCCC
Q 022184           95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDS  166 (301)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~  166 (301)
                      ..-.  .    ...+.....-.++ ..-+++..+.|+.+      ..+..||..+.+-..  .+....... ++ ...++
T Consensus       368 ~~W~--~----~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~  438 (534)
T PHA03098        368 SKWR--E----EPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDG  438 (534)
T ss_pred             Ccee--e----CCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECC
Confidence            4321  1    1111111111122 22366777777632      457888987654321  111111111 12 22356


Q ss_pred             cEEEEEeCCC--------cEEEEeCCCCceE
Q 022184          167 EFLATTSTDG--------SARIWKTEDGVAW  189 (301)
Q Consensus       167 ~~l~~~~~d~--------~i~i~d~~~~~~~  189 (301)
                      ..++.|+.+.        .+.+||..+.+-.
T Consensus       439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~  469 (534)
T PHA03098        439 KIYVIGGISYIDNIKVYNIVESYNPVTNKWT  469 (534)
T ss_pred             EEEEECCccCCCCCcccceEEEecCCCCcee
Confidence            6677776432        3788898776543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.41  E-value=0.41  Score=39.06  Aligned_cols=71  Identities=13%  Similarity=-0.003  Sum_probs=39.2

Q ss_pred             CeeEEEEccCCCcc--eEEEEEEeCCcceEEEEEccCceEee---e-eeccCCCcEEEEEcCCCCEEEEeeCCCcEE
Q 022184          199 KIELCRFSKDGTKP--FLFCTVQRGDKALLAVYDISTWNKIG---H-KRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (301)
Q Consensus       199 ~v~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~d~~~~~~~~---~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  269 (301)
                      .+..+.|.+...+.  .--.+++.-..+.|...++.....+.   . +......+..+++.|||.+.++...+|.|+
T Consensus       254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            35566665443321  00013444446678877776443321   1 122334789999999999888888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.48  Score=41.83  Aligned_cols=200  Identities=12%  Similarity=0.104  Sum_probs=96.0

Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecc-c--ccCCccEEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-E--PKAHKSVLDM  160 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~--~~~~~~i~~~  160 (301)
                      --.|+||+..+.......+        .++.+-.+.|+.+.. |+....+|++++|++-....... .  ......|..+
T Consensus        63 ~~~I~If~~sG~lL~~~~w--------~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec  133 (829)
T KOG2280|consen   63 RPYIRIFNISGQLLGRILW--------KHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVEC  133 (829)
T ss_pred             ceeEEEEeccccchHHHHh--------cCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEE
Confidence            3458888886554321111        124778899987665 56667899999999853222110 1  1222345555


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC--CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Ee
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE--KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KI  237 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~  237 (301)
                      .+..+|-.+++  .+|++.+-.-.....+..++.-...  +..+-...+++.....  ++.....--..++-..... ..
T Consensus       134 ~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~--ll~v~~~v~~~~~q~~~~~~q~  209 (829)
T KOG2280|consen  134 RFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTI--LLDVDVAVGLHICQVEESRVQL  209 (829)
T ss_pred             EEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCccee--EEeechhhhhcccceecccccc
Confidence            55555643333  4455544432222122222211111  1122222222221111  1110000000111111111 11


Q ss_pred             eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEc
Q 022184          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (301)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~s  297 (301)
                      ..+......+..+..||+.++|+--...|.|.+-+.+..+..-.+.... ..+...++|.
T Consensus       210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~-~~~p~qm~Wc  268 (829)
T KOG2280|consen  210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD-HDPPKQMAWC  268 (829)
T ss_pred             cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC-CCchHhceee
Confidence            1222223567889999999999999999999999887766554442111 2333355554

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.23  E-value=0.58  Score=39.08  Aligned_cols=145  Identities=12%  Similarity=0.064  Sum_probs=81.5

Q ss_pred             eeEEEEeeCCCEEEEeecCCeEEEEeCCCcce--ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-----
Q 022184          115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-----  187 (301)
Q Consensus       115 v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----  187 (301)
                      ...+..++++.+++.+.....++-||  .+..  ..........++.+.+.+++..++++ .+|.+. +....++     
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence            34456667877777666433333344  2221  11112234578999999998877665 445543 3333443     


Q ss_pred             eEEEEeec-CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee---eeccCCCcEEEEEcCCCCEEEEee
Q 022184          188 AWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH---KRLLRKPASVLSISLDGKYLAMGS  263 (301)
Q Consensus       188 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~  263 (301)
                      ........ ....+..+.|.+++.      ++..+..|.+.... ..++.-..   ........+.+.|.++++.+++| 
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~------~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-  388 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKE------AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-  388 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCc------EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-
Confidence            22222221 223488899998887      46667777666654 33332211   12234568899998877766666 


Q ss_pred             CCCcEEEE
Q 022184          264 KDGDICVV  271 (301)
Q Consensus       264 ~d~~i~i~  271 (301)
                      .+|.|.-|
T Consensus       389 ~~G~il~~  396 (398)
T PLN00033        389 NDGVLLRY  396 (398)
T ss_pred             CCcEEEEe
Confidence            56766544

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.12  E-value=0.18  Score=44.66  Aligned_cols=118  Identities=12%  Similarity=0.096  Sum_probs=74.5

Q ss_pred             ceEEEECC--CCCeEEEEecCCcEEEEEEcCCcc------------ccccccccCCCCCCCCCeeEEEEe--eCCCEEEE
Q 022184           66 PMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGAT------------DINLLAKKMPPLQDAGPQKCLSFS--VDGSRFAA  129 (301)
Q Consensus        66 v~~~~~~~--~~~~l~~~~~d~~i~~w~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~  129 (301)
                      |+.|....  +.+.|+.+..||.|.+|.++.-..            ..+......-.+.....+.+++++  ...++||+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            55555543  445788889999999998742110            000000111122234678899998  77888999


Q ss_pred             eecCCeEEEEeCCCcce-ecc--cccCCccEEEEEecCCC---c---EEEEEeCCCcEEEEeC
Q 022184          130 GGVDGHLRIMHWPSLRI-ILD--EPKAHKSVLDMDFSLDS---E---FLATTSTDGSARIWKT  183 (301)
Q Consensus       130 ~~~dg~i~v~d~~~~~~-~~~--~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~i~d~  183 (301)
                      ++....|.||-+..... ...  ...+...|.+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            98888888886643211 111  11234578899997743   2   7888899999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.07  E-value=0.84  Score=41.26  Aligned_cols=80  Identities=14%  Similarity=0.107  Sum_probs=54.6

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc--------ccccc------cccCCCCCCCCCeeEEEEeeC---CCE
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--------DINLL------AKKMPPLQDAGPQKCLSFSVD---GSR  126 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~--------~~~~~------~~~~~~~~~~~~v~~~~~s~~---~~~  126 (301)
                      -.|..+.++|+|++|+..+..| |.|..+...-.        .....      ...+........|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4689999999999999988877 66766643210        00000      111111223457899999995   578


Q ss_pred             EEEeecCCeEEEEeCCCc
Q 022184          127 FAAGGVDGHLRIMHWPSL  144 (301)
Q Consensus       127 l~~~~~dg~i~v~d~~~~  144 (301)
                      |++=..|+++++||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            888889999999999643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.00  E-value=0.03  Score=29.63  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=25.4

Q ss_pred             CCeeEEEEeeCC---CEEEEeecCCeEEEEeCCC
Q 022184          113 GPQKCLSFSVDG---SRFAAGGVDGHLRIMHWPS  143 (301)
Q Consensus       113 ~~v~~~~~s~~~---~~l~~~~~dg~i~v~d~~~  143 (301)
                      +.+++++|||+.   .+|+.+-..|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999844   4788877789999999985

It contains a characteristic DLL sequence motif.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.80  E-value=0.21  Score=40.73  Aligned_cols=109  Identities=11%  Similarity=0.142  Sum_probs=56.5

Q ss_pred             cceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC---CCEEEEeec-C-------
Q 022184           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV-D-------  133 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~-d-------  133 (301)
                      ...+|+|.|+|+.+++ ...|.|++++ ..+...........-..........++++|+   ..+|..... .       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4678999999877665 5699999999 3333311111111112234567899999994   234433332 1       


Q ss_pred             -CeEEEEeCCCc-------ceec-cccc---CCccEEEEEecCCCcEEEEEeCC
Q 022184          134 -GHLRIMHWPSL-------RIIL-DEPK---AHKSVLDMDFSLDSEFLATTSTD  175 (301)
Q Consensus       134 -g~i~v~d~~~~-------~~~~-~~~~---~~~~i~~~~~~~~~~~l~~~~~d  175 (301)
                       ..|.-|.+...       +.+. ....   ....-..|+|.|||.++++.+..
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence             23443433322       1111 1111   12245669999999877766543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.79  E-value=0.05  Score=28.79  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=26.0

Q ss_pred             CCcEEEEEcCCC---CEEEEeeCCCcEEEEeCCC
Q 022184          245 KPASVLSISLDG---KYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       245 ~~v~~~~~s~~~---~~l~~~~~d~~i~i~~~~~  275 (301)
                      +.++++.|||+.   .+|+.+-..+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            357899999854   5888888889999999985

It contains a characteristic DLL sequence motif.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.64  E-value=0.42  Score=32.65  Aligned_cols=118  Identities=10%  Similarity=0.003  Sum_probs=71.1

Q ss_pred             EEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-----CCCEEEEeecCCeEEEEeCC
Q 022184           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~v~d~~  142 (301)
                      .-.|......|++++..++|.|++.................+.-...|++++-.+     +...|+.|+ ...+..||+.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            4456666778888889999999998655432221222233444456777775544     345567666 5679999998


Q ss_pred             CcceecccccCCccEEEEEecC---CCcEEEEEeCCCcEEEEeCCCCc
Q 022184          143 SLRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGV  187 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~  187 (301)
                      ....+... .-.+.+.++.+-.   ...-++..+.+-.|.-||....+
T Consensus        82 ~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   82 NNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             cCchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            77665433 3346677776632   22334444445666666654433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.63  E-value=0.75  Score=41.56  Aligned_cols=73  Identities=15%  Similarity=0.200  Sum_probs=51.3

Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCC----------cce--ec-cc--------ccCCccEEEEEecCC---CcE
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS----------LRI--IL-DE--------PKAHKSVLDMDFSLD---SEF  168 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~----------~~~--~~-~~--------~~~~~~i~~~~~~~~---~~~  168 (301)
                      -.|..+.++|+|++++..+..| |.|..+..          ++.  .. ..        ......|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3688899999999999888765 44544431          111  00 00        122247899999995   578


Q ss_pred             EEEEeCCCcEEEEeCCCC
Q 022184          169 LATTSTDGSARIWKTEDG  186 (301)
Q Consensus       169 l~~~~~d~~i~i~d~~~~  186 (301)
                      |+.-..|+++|+||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            999999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK13684 Ycf48-like protein; Provisional

Probab=95.50  E-value=1.1  Score=36.59  Aligned_cols=151  Identities=15%  Similarity=0.130  Sum_probs=84.2

Q ss_pred             CCCeeEEEEeeCCCEEEEeecCCeEEEE-eCCCcceeccc-ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 022184          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIM-HWPSLRIILDE-PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~-d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  189 (301)
                      ...+..+.+.|++.+++++. .|.+..- + ..++.-... ......++++.+.++++.++.+ ..|.+++=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            35688899999887665554 5655432 2 122211111 2233578999999998876665 4566643234444433


Q ss_pred             EEEeec---CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee---eccCCCcEEEEEcCCCCEEEEee
Q 022184          190 TFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGS  263 (301)
Q Consensus       190 ~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~  263 (301)
                      .....+   ....+..+.+.+++..      ...+.+|.+.. ....++.-...   .........+.|..+++.+++| 
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~------~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-  320 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEI------WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-  320 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCE------EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-
Confidence            322211   1234778889988763      45556665543 33333322111   1222357778877776666655 


Q ss_pred             CCCcEEEEeC
Q 022184          264 KDGDICVVDV  273 (301)
Q Consensus       264 ~d~~i~i~~~  273 (301)
                      ..|.|.-|+-
T Consensus       321 ~~G~il~~~~  330 (334)
T PRK13684        321 QRGVLLRYVG  330 (334)
T ss_pred             CCceEEEecC
Confidence            5677776653

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.35  E-value=0.52  Score=39.82  Aligned_cols=197  Identities=13%  Similarity=0.075  Sum_probs=95.0

Q ss_pred             ccEEEecCCccc--cCCcCceeEeeeCCCc-ceeeeCCceeccccccCCcceEEEECC-CCCeEEE-EecCCcEEEEEEc
Q 022184           19 VNLVVLGKSSRA--SSSPSVLEIFSFDPKT-TSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVC-STTNGGCKLFEVY   93 (301)
Q Consensus        19 ~~~~~~g~~~~~--~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~-~~~d~~i~~w~~~   93 (301)
                      ...+++|-.+..  ...+|.|-++.-...+ -.+...........|..-.+..+-.+. +...|.. +.....++-.|++
T Consensus       419 Ns~L~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIE  498 (776)
T COG5167         419 NSHLVVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIE  498 (776)
T ss_pred             CceEEEEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecc
Confidence            456666633222  2345566666554443 111111111112223332344444443 4444443 3334556666776


Q ss_pred             CCccccccccccCCCCCCCCCeeEEEEeeCCC-------EEEEeecCCeEEEEeCCC-cceecccccCCccEEEEEec--
Q 022184           94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-------RFAAGGVDGHLRIMHWPS-LRIILDEPKAHKSVLDMDFS--  163 (301)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~--  163 (301)
                      .++....-        .....+ -+.|.|+.+       .-++|-.+..|.-.|.+- |..+. ........+.-.|+  
T Consensus       499 rGkvveeW--------~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~-v~esKdY~tKn~Fss~  568 (776)
T COG5167         499 RGKVVEEW--------DLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK-VVESKDYKTKNKFSSG  568 (776)
T ss_pred             cceeeeEe--------ecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee-eeeehhcccccccccc
Confidence            66542111        111222 456666432       223454566666556543 32221 11112222222232  


Q ss_pred             --CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184          164 --LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (301)
Q Consensus       164 --~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  232 (301)
                        ....++|.++..|-|++||--.-.....+. ..+..|..+..+.+|+++     ++.+ ...+.+-|++
T Consensus       569 ~tTesGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~i-----laTC-k~yllL~d~~  632 (776)
T COG5167         569 MTTESGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHI-----LATC-KNYLLLTDVP  632 (776)
T ss_pred             ccccCceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEE-----EEee-cceEEEEecc
Confidence              245589999999999999954333222333 334568899999999972     3222 4467777754

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.32  E-value=0.4  Score=36.39  Aligned_cols=68  Identities=15%  Similarity=0.194  Sum_probs=50.0

Q ss_pred             EeeCCCEEEEeecCCeEEEEeCCCcceeccc------c--------cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 022184          120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDE------P--------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (301)
Q Consensus       120 ~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------~--------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  185 (301)
                      +..+++++++.+.+|.+++||+.+++.+..-      .        .....|..+.++.+|.-+++-+ +|....|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4557889999999999999999887754322      1        2335788888888888777665 47788888765


Q ss_pred             Cce
Q 022184          186 GVA  188 (301)
Q Consensus       186 ~~~  188 (301)
                      +.-
T Consensus        97 ~~W   99 (219)
T PF07569_consen   97 GCW   99 (219)
T ss_pred             cee
Confidence            443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.25  E-value=1.2  Score=35.29  Aligned_cols=104  Identities=13%  Similarity=0.207  Sum_probs=63.2

Q ss_pred             CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEe------CCCcEEEEeCCCCceEEEEee----cCCCCeeEE
Q 022184          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS------TDGSARIWKTEDGVAWTFLTR----NSDEKIELC  203 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~----~~~~~v~~~  203 (301)
                      ..|++||..+.+-..--..-.+.|+++.|..+.+.++.|.      ....+..||..+... ..+..    .-++++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence            3589999877665433334457899999997777777664      345688999877653 22322    123567777


Q ss_pred             EEccC-CCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184          204 RFSKD-GTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (301)
Q Consensus       204 ~~~~~-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  239 (301)
                      .+..+ +..+++. ......+..|..||-.++..+..
T Consensus        95 ~~~~~d~~~~~~a-G~~~~g~~~l~~~dGs~W~~i~~  130 (281)
T PF12768_consen   95 TFISNDGSNFWVA-GRSANGSTFLMKYDGSSWSSIGS  130 (281)
T ss_pred             EeeccCCceEEEe-ceecCCCceEEEEcCCceEeccc
Confidence            77543 3332211 12234455688888776665543

>PHA02790 Kelch-like protein; Provisional

Probab=95.17  E-value=1.9  Score=37.31  Aligned_cols=144  Identities=11%  Similarity=0.056  Sum_probs=70.5

Q ss_pred             eCCCEEEEeecC--CeEEEEeCCCccee--cccccCCccEEEEEecCCCcEEEEEeCCC---cEEEEeCCCCceEEEEee
Q 022184          122 VDGSRFAAGGVD--GHLRIMHWPSLRII--LDEPKAHKSVLDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTR  194 (301)
Q Consensus       122 ~~~~~l~~~~~d--g~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~  194 (301)
                      -++...++|+.+  ..+..||..+++..  ..+.........+  .-+|+..+.|+.++   .+..||.++.+-...-..
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m  394 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST  394 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence            467777888754  35777886554322  1221111111122  22577778777553   467888876544322111


Q ss_pred             cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce--EeeeeeccCCCcEEEEEcCCCCEEEEeeCC-----Cc
Q 022184          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKD-----GD  267 (301)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~  267 (301)
                      .... ....+..-+++. |    +.|   |.+.+||.++.+  .+..+.........+.  -+++..+.|+.+     ..
T Consensus       395 ~~~r-~~~~~~~~~~~I-Y----v~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~  463 (480)
T PHA02790        395 YYPH-YKSCALVFGRRL-F----LVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDT  463 (480)
T ss_pred             CCcc-ccceEEEECCEE-E----EEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccce
Confidence            1111 111112223332 2    233   246778876543  2222222222222222  367788888754     35


Q ss_pred             EEEEeCCCcee
Q 022184          268 ICVVDVKKMEI  278 (301)
Q Consensus       268 i~i~~~~~~~~  278 (301)
                      +..||..+.+.
T Consensus       464 ve~Yd~~~~~W  474 (480)
T PHA02790        464 IEVYNNRTYSW  474 (480)
T ss_pred             EEEEECCCCeE
Confidence            77888776654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.94  E-value=2.7  Score=37.77  Aligned_cols=156  Identities=10%  Similarity=0.039  Sum_probs=87.7

Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccc------cccc-cCCC--------CCCCCCeeEEEEee--CCCEEEEeecCCeEE
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDIN------LLAK-KMPP--------LQDAGPQKCLSFSV--DGSRFAAGGVDGHLR  137 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~------~~~~-~~~~--------~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~  137 (301)
                      .++++.| ..+.|.||+++.-.....      +... ....        ..-...|+.+....  +...|+.+.+||.|.
T Consensus        49 ~n~LFiA-~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIA-YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEE-ECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            5566665 467799999875443211      0000 0000        00112355554444  456788999999999


Q ss_pred             EEeCCC-------c----ce---e-----cccccCCccEEEEEec--CCCcEEEEEeCCCcEEEEeCCCC--ceEEEEee
Q 022184          138 IMHWPS-------L----RI---I-----LDEPKAHKSVLDMDFS--LDSEFLATTSTDGSARIWKTEDG--VAWTFLTR  194 (301)
Q Consensus       138 v~d~~~-------~----~~---~-----~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~  194 (301)
                      +|..++       .    +.   .     .-.......+++++++  ...++||+++....|.||-....  +....-..
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            996521       1    00   0     0011223478899998  77888998888888888765432  11111111


Q ss_pred             cCCCCeeEEEEccCCCcceE-EEEEEeCCcceEEEEEc
Q 022184          195 NSDEKIELCRFSKDGTKPFL-FCTVQRGDKALLAVYDI  231 (301)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~d~  231 (301)
                      .+...|.+++|-++.....- ..+++.+-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            12335889999876521110 12466677788888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.93  E-value=1.1  Score=37.94  Aligned_cols=62  Identities=11%  Similarity=0.081  Sum_probs=38.5

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG  124 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  124 (301)
                      -.....|+|.|+|+.|++--..|.|++++..+.......................|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            45688999999998777654469999987654432111110001111135778999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.88  E-value=1.6  Score=36.58  Aligned_cols=137  Identities=12%  Similarity=0.182  Sum_probs=80.7

Q ss_pred             EEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee
Q 022184           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII  147 (301)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~  147 (301)
                      .+-|...++.|++ ...|.+.=|-+.........    .-.....++|.++.||+|.+.||+--.+.+|.+++....+..
T Consensus        27 gvFfDDaNkqlfa-vrSggatgvvvkgpndDVpi----Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~  101 (657)
T KOG2377|consen   27 GVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPI----SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ  101 (657)
T ss_pred             ceeeccCcceEEE-EecCCeeEEEEeCCCCCCCc----eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence            3444433444443 34555777777654421110    111224579999999999999999999999999997433322


Q ss_pred             cc----cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          148 LD----EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       148 ~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      ..    -......|....|+.+ .-+|.... .-+-+|.....+....+...+...|....|.++.+.
T Consensus       102 l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v  167 (657)
T KOG2377|consen  102 LEYTQECKTKNANILGFCWTSS-TEIAFITD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAV  167 (657)
T ss_pred             hHHHHHhccCcceeEEEEEecC-eeEEEEec-CCeEEEEEchhhhhhhhhhhcccCccEEEEccccce
Confidence            21    1222346999999866 44555443 345666654433222222223345888888888775

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.87  E-value=3.2  Score=38.29  Aligned_cols=249  Identities=10%  Similarity=0.012  Sum_probs=124.5

Q ss_pred             CceeEEEeeeecC--CCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEE--ECCCC-CeE
Q 022184            4 GGTVTCGSWIKRP--ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA--VNPSG-DDF   78 (301)
Q Consensus         4 ~~~v~~~~w~~~~--~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~-~~l   78 (301)
                      -+||..+.-....  +.+.++.+.|.    ..++.++|.+-.-.-..+     +...+.| -..+..+.  +.++- ++|
T Consensus       353 LgPI~Dm~Vvd~d~q~q~qivtCsGa----~kdgSLRiiRngi~I~e~-----A~i~l~G-ikg~w~lk~~v~~~~d~yl  422 (1096)
T KOG1897|consen  353 LGPIVDMCVVDLDRQGQGQIVTCSGA----FKDGSLRIIRNGIGIDEL-----ASIDLPG-IKGMWSLKSMVDENYDNYL  422 (1096)
T ss_pred             ccceeeEEEEeccccCCceEEEEeCC----CCCCcEEEEeccccccee-----eEeecCC-ccceeEeeccccccCCcEE
Confidence            4688887777655  44556655442    366778887654332222     2234455 34466666  44422 255


Q ss_pred             EEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccE
Q 022184           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (301)
Q Consensus        79 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i  157 (301)
                      +.+ .-+.-++..+... .....    ...  -......+..|. .++.|+=.. ...|++++-. +. .... .....+
T Consensus       423 vls-f~~eTrvl~i~~e-~ee~~----~~g--f~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~-~~-~~~W-~~p~~~  490 (1096)
T KOG1897|consen  423 VLS-FISETRVLNISEE-VEETE----DPG--FSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA-GL-RSEW-RPPGKI  490 (1096)
T ss_pred             EEE-eccceEEEEEccc-eEEec----ccc--ccccCceEEEEccCCceEEEEe-cccEEEEcch-hh-hhcc-cCCCce
Confidence            544 3333556666443 11100    010  111222333333 444444433 3458887744 22 2222 223344


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE-EEEEeCCcceEE-EEEccCce
Q 022184          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF-CTVQRGDKALLA-VYDISTWN  235 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~i~-~~d~~~~~  235 (301)
                      +....+.+...++.++.++.+...++..+.............+.|+.++|-|...... .++.|-.+..+. +.-.....
T Consensus       491 ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~  570 (1096)
T KOG1897|consen  491 TIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI  570 (1096)
T ss_pred             EEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc
Confidence            5455555566777777778888888777664333333345569999999875433200 023333322222 22222222


Q ss_pred             Eeeee-ecc---CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          236 KIGHK-RLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       236 ~~~~~-~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      .+... ...   ...|--..+-.|..+|.++..||.+.-|.+.
T Consensus       571 ~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  571 LITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             eeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence            22111 111   1234444555678899999999988766544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.87  E-value=0.2  Score=38.05  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=48.5

Q ss_pred             ECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCC--------CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           71 VNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL--------QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      +..++++|++.+.+|.+++||+.+.+.......- .+.+        .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si-~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSI-APLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccH-HHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            3446888999999999999999987763332110 0111        2446788888888887666655 5778888764


Q ss_pred             C
Q 022184          143 S  143 (301)
Q Consensus       143 ~  143 (301)
                      -
T Consensus        96 L   96 (219)
T PF07569_consen   96 L   96 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.80  E-value=1.8  Score=35.23  Aligned_cols=148  Identities=18%  Similarity=0.181  Sum_probs=82.5

Q ss_pred             CCcceEEEECCCCCeEEEEecCCc------EEEEEEcCCcc-ccccccccCCCCC-CC--------CCeeEEEEeeCCCE
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGG------CKLFEVYGGAT-DINLLAKKMPPLQ-DA--------GPQKCLSFSVDGSR  126 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~------i~~w~~~~~~~-~~~~~~~~~~~~~-~~--------~~v~~~~~s~~~~~  126 (301)
                      -+....+.+.+++..+++.+.++.      +..+++..... ...........+. ..        ...-++++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            456788999876666666677777      66666654111 0000000000000 11        13447788678877


Q ss_pred             EEEeecC------CeEEEEeCCCcceeccc---------------ccCCccEEEEEecCCCcEEEEEeC-----CC--c-
Q 022184          127 FAAGGVD------GHLRIMHWPSLRIILDE---------------PKAHKSVLDMDFSLDSEFLATTST-----DG--S-  177 (301)
Q Consensus       127 l~~~~~d------g~i~v~d~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~l~~~~~-----d~--~-  177 (301)
                      +++.-.+      ..|+.++.. |+....+               ........+++++|+|+.|+++.+     |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7766556      678888865 4443222               112246899999999996665543     22  1 


Q ss_pred             ------EEE--EeCCC-CceEEEE--eec------CCCCeeEEEEccCCCc
Q 022184          178 ------ARI--WKTED-GVAWTFL--TRN------SDEKIELCRFSKDGTK  211 (301)
Q Consensus       178 ------i~i--~d~~~-~~~~~~~--~~~------~~~~v~~~~~~~~~~~  211 (301)
                            +++  ||..+ +.....+  ...      ....+..+.+-++++.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l  228 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL  228 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence                  444  45444 3222222  222      2346889999999985

>PRK13684 Ycf48-like protein; Provisional

Probab=94.62  E-value=2.1  Score=35.05  Aligned_cols=114  Identities=20%  Similarity=0.239  Sum_probs=63.9

Q ss_pred             CccEEEEEecCCCcEEEEEeCCCcEEE-EeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184          154 HKSVLDMDFSLDSEFLATTSTDGSARI-WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (301)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  232 (301)
                      ...+.++.+.|++.+++++. .|.+.. +| ..++.-..........++.+.+.++++.      +..+..|.+.+=...
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~------~~vg~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNL------WMLARGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCE------EEEecCCEEEEccCC
Confidence            35788999999887766654 454432 22 2233333344444556899999999884      334556666432233


Q ss_pred             CceEeeeeec----cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          233 TWNKIGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       233 ~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      .+..-.....    ....+..+.+.|+++.++++ .+|.+. .....++
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~  290 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGK  290 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCC
Confidence            3322111111    12357788999988766555 566554 3444433

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.61  E-value=3.7  Score=37.91  Aligned_cols=166  Identities=11%  Similarity=0.061  Sum_probs=98.6

Q ss_pred             ccCCcceEEEEC---C----CCCeEEEEecCCcEEEEEEcCCcc-------ccccccccCCCCC----CCCCeeEEEEee
Q 022184           61 ESEGDPMTIAVN---P----SGDDFVCSTTNGGCKLFEVYGGAT-------DINLLAKKMPPLQ----DAGPQKCLSFSV  122 (301)
Q Consensus        61 ~h~~~v~~~~~~---~----~~~~l~~~~~d~~i~~w~~~~~~~-------~~~~~~~~~~~~~----~~~~v~~~~~s~  122 (301)
                      .-..+|..|+|.   .    ..++|++ -....+.|+...-.+.       ...+....+..+.    ...+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            446789999998   2    1234444 4556688888332221       1111111111111    335678999999


Q ss_pred             -CCCEEEEeecCCeEEEEeCCCcce----ecccc-cC----------CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 022184          123 -DGSRFAAGGVDGHLRIMHWPSLRI----ILDEP-KA----------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG  186 (301)
Q Consensus       123 -~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~-~~----------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  186 (301)
                       +.+.||+....|...||++.....    ..... ..          .+.-..+.|.++.+.|+.++. ..+.++|+++.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence             667899999999999999921111    00000 11          123347889888888887765 67899999987


Q ss_pred             ceEE-EEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          187 VAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       187 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      .... .........|..+.-+|.... +++ +++.   ..|...|+..
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~-~~F-iLTs---~eiiw~~~~~  277 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPS-HVF-ILTS---KEIIWLDVKS  277 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccc-eEE-EEec---CeEEEEEccC
Confidence            6644 333334456888888887443 222 2332   4577777765

These proteins are found in fungi.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.56  E-value=0.0053  Score=50.66  Aligned_cols=134  Identities=13%  Similarity=0.073  Sum_probs=91.1

Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe
Q 022184          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  237 (301)
                      -...|.|.+.-++.++.+..+..||-.... .....  .....-.++|..++..+    ++.+...+.+.+||+.+....
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n--~tg~aldm~wDkegdvl----avlAek~~piylwd~n~eytq  110 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELN--PTGKALDMAWDKEGDVL----AVLAEKTGPIYLWDVNSEYTQ  110 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcce-ecccC--CchhHhhhhhccccchh----hhhhhcCCCeeechhhhhhHH
Confidence            356788877778888888999999954332 22222  23345677888877763    455567788999999764322


Q ss_pred             eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      ..-.+....-.-+.|++....++.+...|.+.|++..+....-.. ..| ...+++++|.+.+
T Consensus       111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh-~RRgtq~av~lEd  171 (615)
T KOG2247|consen  111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKH-QRRGTQIAVTLED  171 (615)
T ss_pred             HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh-ccc-ccceeEEEecccc
Confidence            111122222223789999999999999999999998876655443 236 7788899988765

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.35  E-value=0.37  Score=40.03  Aligned_cols=165  Identities=12%  Similarity=0.048  Sum_probs=91.8

Q ss_pred             cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCee-EEEEeeCCCEEEEeecCCeEEEE-
Q 022184           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIM-  139 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~v~-  139 (301)
                      ....|..+-..|||+.+..-+. ..+.++++.+.....+......+ -.....|. .+..-..|..+++++.||.|.-| 
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dsp-g~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSP-GDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCC-CchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            3456777888999998877655 66889998776543321111000 00001122 12222356678888999988877 


Q ss_pred             eCCCcce-----ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          140 HWPSLRI-----ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       140 d~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      |.+.+..     ++.+.-...++.-+.-..+.+-+++-+..|++.++.....+.+-.-.. .. .+.-+++||.+.+   
T Consensus       297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~-~~~~~~~Sp~~~~---  371 (733)
T COG4590         297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQ-APQLVAMSPNQAY---  371 (733)
T ss_pred             eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hc-CcceeeeCcccch---
Confidence            5433221     111111112333332222344677777888888876544443322111 12 3677899999997   


Q ss_pred             EEEEEeCCcceEEEEEccCceE
Q 022184          215 FCTVQRGDKALLAVYDISTWNK  236 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~  236 (301)
                         ....+.|.++++.+++..+
T Consensus       372 ---Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         372 ---LLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             ---heeecCCceEEEEecCCCC
Confidence               3345567899988876543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.33  E-value=2.7  Score=35.22  Aligned_cols=118  Identities=6%  Similarity=0.032  Sum_probs=75.9

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      .++|.++.|++|.+.||+--.+.+|.+++....+........   -......|....|+.+ .-+|.....| +-+|...
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~---ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE---CKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL  140 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH---hccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence            569999999999999999999999999998655432221111   1112345888999866 5566666555 6666554


Q ss_pred             Cc-ceecccccCCccEEEEEecCCCcEEEEEe--CCCcEEEEeCCC
Q 022184          143 SL-RIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTED  185 (301)
Q Consensus       143 ~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~  185 (301)
                      .. +.++..+.+.-.|.-..|+++.+.++-++  ..+++.=+.+++
T Consensus       141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            33 23344555666888889999887543333  334444444443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.32  E-value=1.3  Score=37.68  Aligned_cols=146  Identities=14%  Similarity=0.096  Sum_probs=88.6

Q ss_pred             EeeCCCEEE-EeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCc-------EEEEEeCCCcEEEEeCCC-CceEE
Q 022184          120 FSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-------FLATTSTDGSARIWKTED-GVAWT  190 (301)
Q Consensus       120 ~s~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~-~~~~~  190 (301)
                      ...+.++|+ .|.....++-.|++.|+.+-....+.. + -+.|.|+.+       .-+.|-.+..|.-.|.|- |..+.
T Consensus       475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             ecCCcceEEecCCCcccceeeecccceeeeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            334555554 455567788889999988776655543 3 567777432       123344455555556553 32222


Q ss_pred             EEeec---CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCc
Q 022184          191 FLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD  267 (301)
Q Consensus       191 ~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  267 (301)
                      .....   ......+..-..+|-      ++.++..|-|++||.-.-+....+.+....|-.+..+.+|+++++.+. ..
T Consensus       553 v~esKdY~tKn~Fss~~tTesGy------Ia~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~y  625 (776)
T COG5167         553 VVESKDYKTKNKFSSGMTTESGY------IAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NY  625 (776)
T ss_pred             eeeehhccccccccccccccCce------EEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ce
Confidence            22111   111122222223333      688899999999997654444556777788999999999999888775 46


Q ss_pred             EEEEeCC
Q 022184          268 ICVVDVK  274 (301)
Q Consensus       268 i~i~~~~  274 (301)
                      +.+-|++
T Consensus       626 llL~d~~  632 (776)
T COG5167         626 LLLTDVP  632 (776)
T ss_pred             EEEEecc
Confidence            7777764

>PHA02790 Kelch-like protein; Provisional

Probab=94.27  E-value=3.3  Score=35.88  Aligned_cols=149  Identities=8%  Similarity=0.009  Sum_probs=70.7

Q ss_pred             cEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC--CcEEEEEEcCCcc
Q 022184           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--GGCKLFEVYGGAT   97 (301)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--~~i~~w~~~~~~~   97 (301)
                      .+.++||....   ...-.+|.|++....+...+..    .........+.  -++...+.|+.+  ..+..||...+.-
T Consensus       273 ~lyviGG~~~~---~~~~~v~~Ydp~~~~W~~~~~m----~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W  343 (480)
T PHA02790        273 VVYLIGGWMNN---EIHNNAIAVNYISNNWIPIPPM----NSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW  343 (480)
T ss_pred             EEEEEcCCCCC---CcCCeEEEEECCCCEEEECCCC----CchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE
Confidence            45566664321   1122477788877666443221    11111122222  356666777754  3577777654322


Q ss_pred             ccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC---eEEEEeCCCcceecc--cccCCccEEEEEecCCCcEEEEE
Q 022184           98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRIMHWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATT  172 (301)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~  172 (301)
                        .    ....+..... ......-+|+..+.|+.++   .+..||.++.+-...  +....... ++ ..-+++..+.|
T Consensus       344 --~----~~~~l~~~r~-~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G  414 (480)
T PHA02790        344 --V----NMPSLLKPRC-NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG  414 (480)
T ss_pred             --E----ECCCCCCCCc-ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC
Confidence              1    1222221111 1122233677778877543   467788766543221  11111111 12 12356666665


Q ss_pred             eCCCcEEEEeCCCCceE
Q 022184          173 STDGSARIWKTEDGVAW  189 (301)
Q Consensus       173 ~~d~~i~i~d~~~~~~~  189 (301)
                         |.+.+||.++.+-.
T Consensus       415 ---G~~e~ydp~~~~W~  428 (480)
T PHA02790        415 ---RNAEFYCESSNTWT  428 (480)
T ss_pred             ---CceEEecCCCCcEe
Confidence               45778888766543

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=94.13  E-value=3.1  Score=37.50  Aligned_cols=91  Identities=18%  Similarity=0.137  Sum_probs=52.7

Q ss_pred             EEEEecCCCcEEEEEeCCC-----cEEEEeCC---CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184          158 LDMDFSLDSEFLATTSTDG-----SARIWKTE---DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~-----~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (301)
                      ..+.|-|+|..+++-..||     .|..+.-+   -|+.-  +..+.+..+..++|+-....      ......+.+.+|
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~--lr~~~dEk~~~~~wn~~s~v------lav~~~n~~~lw  321 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFD--LRVGCDEKAFLENWNLLSTV------LAVAEGNLLKLW  321 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcc--ccCCchhhhhhhhhhHHHHH------HHHhhcceEEEE
Confidence            4589999999999977655     24555422   12211  11122334566677665553      344556789999


Q ss_pred             EccCceEeeeeeccCCCcEEEEEcCCC
Q 022184          230 DISTWNKIGHKRLLRKPASVLSISLDG  256 (301)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~s~~~  256 (301)
                      -..+..-.-.....-..+.-+.|+|..
T Consensus       322 ttkNyhWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         322 TTKNYHWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             EccceEEEEEEeecCCCcceeeecccc
Confidence            887654332222223456678888853

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.10  E-value=1.1  Score=38.19  Aligned_cols=76  Identities=14%  Similarity=0.091  Sum_probs=50.5

Q ss_pred             CeeEEEEeeCCCEEEEeecCCeEEEEeC---------CCccee--cc-------cc--cCCccEEEEEecCCC---cEEE
Q 022184          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHW---------PSLRII--LD-------EP--KAHKSVLDMDFSLDS---EFLA  170 (301)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~v~d~---------~~~~~~--~~-------~~--~~~~~i~~~~~~~~~---~~l~  170 (301)
                      .|..+..++.|..++-.+.+|.+.++-.         +.++..  .+       +.  ..+-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            5677888999999988888886554321         223221  00       11  111256788999975   5788


Q ss_pred             EEeCCCcEEEEeCCCCceE
Q 022184          171 TTSTDGSARIWKTEDGVAW  189 (301)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~~  189 (301)
                      .-+.|..+++||+.....+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            8888999999999765444

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.00  E-value=1.3  Score=37.67  Aligned_cols=77  Identities=10%  Similarity=-0.045  Sum_probs=48.4

Q ss_pred             eeEEEEccCCCcceEEEEEEeCCcceEEEEEcc---------CceEe---e------eeec--cCCCcEEEEEcCCC---
Q 022184          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---------TWNKI---G------HKRL--LRKPASVLSISLDG---  256 (301)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~---------~~~~~---~------~~~~--~~~~v~~~~~s~~~---  256 (301)
                      |..+..++.|..     ++-.+.+|.+.++=.+         .++..   +      .+..  ..-.+..++|+|+.   
T Consensus       106 V~~vl~s~~GS~-----VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D  180 (741)
T KOG4460|consen  106 VYQVLLSPTGSH-----VALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILD  180 (741)
T ss_pred             EEEEEecCCCce-----EEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCC
Confidence            667888899987     4556667755544311         22211   0      0101  11235678999975   


Q ss_pred             CEEEEeeCCCcEEEEeCCCceeecc
Q 022184          257 KYLAMGSKDGDICVVDVKKMEINHW  281 (301)
Q Consensus       257 ~~l~~~~~d~~i~i~~~~~~~~~~~  281 (301)
                      ..|..-+.|+.|++||+.....+..
T Consensus       181 ~hL~iL~sdnviRiy~lS~~telyl  205 (741)
T KOG4460|consen  181 PHLVLLTSDNVIRIYSLSEPTELYL  205 (741)
T ss_pred             ceEEEEecCcEEEEEecCCcchhhc
Confidence            6788888899999999987665543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.71  E-value=0.69  Score=33.70  Aligned_cols=31  Identities=16%  Similarity=0.155  Sum_probs=25.7

Q ss_pred             CCcEEEEEcCCC------CEEEEeeCCCcEEEEeCCC
Q 022184          245 KPASVLSISLDG------KYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       245 ~~v~~~~~s~~~------~~l~~~~~d~~i~i~~~~~  275 (301)
                      ..+..++|||-|      -+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999953      3788889999999999763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.57  E-value=3.4  Score=33.67  Aligned_cols=149  Identities=15%  Similarity=0.112  Sum_probs=86.2

Q ss_pred             CCCeeEEEEeeCCCEEEEeecCCe------EEEEeCCC--cc--ee-----cccccCCc--------cEEEEEecCCCcE
Q 022184          112 AGPQKCLSFSVDGSRFAAGGVDGH------LRIMHWPS--LR--II-----LDEPKAHK--------SVLDMDFSLDSEF  168 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg~------i~v~d~~~--~~--~~-----~~~~~~~~--------~i~~~~~~~~~~~  168 (301)
                      -+..+.+.+.+++..+++.+++|.      +..+++..  +.  .+     ..+....+        ...+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            367788999976666777777777      65555543  10  00     01111111        3457888778888


Q ss_pred             EEEEeCC------CcEEEEeCCCCceEEEEee--------------cCCCCeeEEEEccCCCcceEEEEEEeCCc-----
Q 022184          169 LATTSTD------GSARIWKTEDGVAWTFLTR--------------NSDEKIELCRFSKDGTKPFLFCTVQRGDK-----  223 (301)
Q Consensus       169 l~~~~~d------~~i~i~d~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----  223 (301)
                      +++.-.+      ..|..++.. |+....+..              ........++++|+|+.++.+.=..-..|     
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            8887777      788888876 655444421              12234789999999996443221110112     


Q ss_pred             ------ceEEEEEccC-ceEe----eeeec-----cCCCcEEEEEcCCCCEEEE
Q 022184          224 ------ALLAVYDIST-WNKI----GHKRL-----LRKPASVLSISLDGKYLAM  261 (301)
Q Consensus       224 ------~~i~~~d~~~-~~~~----~~~~~-----~~~~v~~~~~s~~~~~l~~  261 (301)
                            -.|..||..+ ++..    ..+..     ....++.+.+-+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  2344566554 2121    11121     3467889999999987664

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.48  E-value=0.41  Score=43.24  Aligned_cols=161  Identities=17%  Similarity=0.265  Sum_probs=83.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEE-----------EC
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA-----------VN   72 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-----------~~   72 (301)
                      +.++--+.|+|--.+..++-+|.      .++.+++..++....         ..+.+|...+..++           .+
T Consensus       180 gs~~~~V~wcp~~~~~~~ic~~~------~~~~i~lL~~~ra~~---------~l~rsHs~~~~d~a~~~~g~~~l~~lS  244 (1283)
T KOG1916|consen  180 GSDPQLVSWCPIAVNKVYICYGL------KGGEIRLLNINRALR---------SLFRSHSQRVTDMAFFAEGVLKLASLS  244 (1283)
T ss_pred             CCCcceeeecccccccceeeecc------CCCceeEeeechHHH---------HHHHhcCCCcccHHHHhhchhhheeeC
Confidence            34455667775433344444444      445567777765432         22445666655554           58


Q ss_pred             CCCCeEEEEecCCcEEEEEEcCCcc-ccccccccCCCCCCC-CCeeEEEEeeCCC---------EEEEee-cCCeEEEEe
Q 022184           73 PSGDDFVCSTTNGGCKLFEVYGGAT-DINLLAKKMPPLQDA-GPQKCLSFSVDGS---------RFAAGG-VDGHLRIMH  140 (301)
Q Consensus        73 ~~~~~l~~~~~d~~i~~w~~~~~~~-~~~~~~~~~~~~~~~-~~v~~~~~s~~~~---------~l~~~~-~dg~i~v~d  140 (301)
                      |||+.++.+..||.++.|.+.-... ..+..   .....|. .+-.|.-++.+..         ++++++ .+..+++|.
T Consensus       245 pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rcl---hewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~  321 (1283)
T KOG1916|consen  245 PDGTVFAWAISDGSVGFYQIYITGKIVHRCL---HEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA  321 (1283)
T ss_pred             CCCcEEEEeecCCccceeeeeeeccccHhhh---hccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence            9999999999999999998753322 11111   1111222 2222222332211         233333 346688888


Q ss_pred             CCCcceecccccCCccEEEEEecCCCc------------EEEEEeCCCcEEEEeCCC
Q 022184          141 WPSLRIILDEPKAHKSVLDMDFSLDSE------------FLATTSTDGSARIWKTED  185 (301)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~------------~l~~~~~d~~i~i~d~~~  185 (301)
                      ....++...+  ..+.|..+. -++++            .+++-+.++.|++|.-+.
T Consensus       322 ~a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  322 EAPWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             ccchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence            7666654221  123344444 22332            133455678888886544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.41  E-value=3  Score=32.55  Aligned_cols=155  Identities=11%  Similarity=-0.040  Sum_probs=96.1

Q ss_pred             CeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE-EE
Q 022184          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-FL  192 (301)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~  192 (301)
                      ....++-.|||..-+++...+.|--.|..+++...--.+....-..|..-|||..-++-+.. -|.-.|-++.+... .+
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            34667888999999999888889888999998765444445566788889998866664332 45555655544322 11


Q ss_pred             e-ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec-cCCCcEEEEEcCCCCEEEEeeCCCcEEE
Q 022184          193 T-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICV  270 (301)
Q Consensus       193 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i  270 (301)
                      . .+.........|.+.|..-     +++ ..|.---.|..+. .+..+.. .....+.++..|||..-++.-.++.|..
T Consensus       142 p~~~a~~nlet~vfD~~G~lW-----Ft~-q~G~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiar  214 (353)
T COG4257         142 PLEHADANLETAVFDPWGNLW-----FTG-QIGAYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIAR  214 (353)
T ss_pred             ccccCCCcccceeeCCCccEE-----Eee-ccccceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEeccccceEE
Confidence            1 2223457788899999852     222 1211111121111 1222222 2234577899999998888777777888


Q ss_pred             EeCCCc
Q 022184          271 VDVKKM  276 (301)
Q Consensus       271 ~~~~~~  276 (301)
                      .|..++
T Consensus       215 idp~~~  220 (353)
T COG4257         215 IDPFAG  220 (353)
T ss_pred             cccccC
Confidence            887665

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.18  E-value=0.9  Score=40.01  Aligned_cols=72  Identities=22%  Similarity=0.237  Sum_probs=45.3

Q ss_pred             eCCCEEEEeecCCeEEEEeCCC----ccee--------------cccc--------cCCccEEEEEecC----CCcEEEE
Q 022184          122 VDGSRFAAGGVDGHLRIMHWPS----LRII--------------LDEP--------KAHKSVLDMDFSL----DSEFLAT  171 (301)
Q Consensus       122 ~~~~~l~~~~~dg~i~v~d~~~----~~~~--------------~~~~--------~~~~~i~~~~~~~----~~~~l~~  171 (301)
                      ++...++++..||.+.......    +...              ..+.        ........+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3677888888899888877653    1111              0010        0112355566666    6779999


Q ss_pred             EeCCCcEEEEeCCCCceEEEEe
Q 022184          172 TSTDGSARIWKTEDGVAWTFLT  193 (301)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~  193 (301)
                      .+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.17  E-value=0.012  Score=48.70  Aligned_cols=139  Identities=12%  Similarity=0.123  Sum_probs=92.4

Q ss_pred             cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEE-EeecCCeEEEEe
Q 022184           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMH  140 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~v~d  140 (301)
                      |-.......|-|.+..++.++.+..+..||-.....         .....++....++|..++..++ .+-..+.+.+||
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~---------le~n~tg~aldm~wDkegdvlavlAek~~piylwd  103 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI---------LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWD  103 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhhccee---------cccCCchhHhhhhhccccchhhhhhhcCCCeeech
Confidence            444455677888888899888999899998765432         1122335566788888777654 455678999999


Q ss_pred             CCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC
Q 022184          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (301)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (301)
                      +.+.....--.+....-.-+.|++....++.+...+.+.|++..+.+.+...-. +..++.++++.+.+.
T Consensus       104 ~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk-h~RRgtq~av~lEd~  172 (615)
T KOG2247|consen  104 VNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK-HQRRGTQIAVTLEDY  172 (615)
T ss_pred             hhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc-cccceeEEEecccce
Confidence            976543221112221112267898888888888889999999876654443322 334678888888765

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.15  E-value=2.8  Score=31.42  Aligned_cols=139  Identities=9%  Similarity=0.054  Sum_probs=78.0

Q ss_pred             CEEEEeecCCeEEEEeCCCc--ceecccccCCccEEEEEecCCCcEEEEEeCCC------cEEEEe-CCC----Cce---
Q 022184          125 SRFAAGGVDGHLRIMHWPSL--RIILDEPKAHKSVLDMDFSLDSEFLATTSTDG------SARIWK-TED----GVA---  188 (301)
Q Consensus       125 ~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------~i~i~d-~~~----~~~---  188 (301)
                      ..|+.+...+.|.+|++.+.  +....+ ..-+.|..+.++..|++|+|--.+.      .+|+|- .+.    ..+   
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTF-STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEE-cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            45555566788999999832  233333 3337899999999999999965332      456651 111    111   


Q ss_pred             ------------------EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE-eeee---e-----
Q 022184          189 ------------------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHK---R-----  241 (301)
Q Consensus       189 ------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~---~-----  241 (301)
                                        +..+..+-..++.+++..|-...     ++.++ ++.+.+|.+..... ...+   .     
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-----LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l  181 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-----LLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSL  181 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-----EEEEc-CCEEEEEEEEEEEEecccccEEechhhh
Confidence                              12222233345677888776544     34444 55788998765433 1100   0     


Q ss_pred             -cc--CCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          242 -LL--RKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       242 -~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                       .+  +-.+..+++.  +.|+|..+. -.++++.+
T Consensus       182 ~~~~~~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl  213 (215)
T PF14761_consen  182 IDHIDNFKPTQVAIC--EGYIAVMSD-LEVLVLKL  213 (215)
T ss_pred             hheecCceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence             01  1123344443  557777764 45776654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.15  E-value=4.9  Score=34.27  Aligned_cols=111  Identities=12%  Similarity=0.106  Sum_probs=60.8

Q ss_pred             ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE--E----eecCCCCeeEEEEccCC----CcceEEEEEEeC---
Q 022184          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF--L----TRNSDEKIELCRFSKDG----TKPFLFCTVQRG---  221 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~----~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~---  221 (301)
                      ...+.|+|.||+++|++--..|.|++++..++.....  +    ..........++++|+-    ...++++..+..   
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            4568999999998777765569999998655432211  1    11123457899999884    211222222211   


Q ss_pred             ----CcceEEEEEccCc-------eEe-eeee-ccCCCcEEEEEcCCCCEEEEeeCC
Q 022184          222 ----DKALLAVYDISTW-------NKI-GHKR-LLRKPASVLSISLDGKYLAMGSKD  265 (301)
Q Consensus       222 ----~~~~i~~~d~~~~-------~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~d  265 (301)
                          ....|.-|.+...       +.+ ..+. ...+.-..|.|.|||++.++.+..
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                1234555554321       111 1111 112335678999999866655443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.10  E-value=2.8  Score=31.27  Aligned_cols=167  Identities=15%  Similarity=0.188  Sum_probs=87.6

Q ss_pred             CCCEEEEeec--CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEE-EEeCCCcEEEEeCCCCceEEEEeecCCCC
Q 022184          123 DGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEK  199 (301)
Q Consensus       123 ~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  199 (301)
                      +|.++.+.+.  ...|++||+.+++.+....-....+..=-...-+..+. -.-.+|.-..+|.++-+.+..+.-..++ 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc-
Confidence            4455555543  45799999998887654432211111111111133222 2335777888998888777666533322 


Q ss_pred             eeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc--C---CCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL--R---KPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~---~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                       ..  ...|++.     +..+.....+..-|.++..........  .   ..++.+.|- ||...|-.=.+..|...+.+
T Consensus       134 -Wg--Lt~d~~~-----LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~  204 (262)
T COG3823         134 -WG--LTSDDKN-----LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD  204 (262)
T ss_pred             -ee--eecCCcc-----eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence             22  3456665     455555667777777665443332221  1   123334442 45555544445566666666


Q ss_pred             Cceeecccc-----------ccccCccEEEEEEccCC
Q 022184          275 KMEINHWSK-----------RLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       275 ~~~~~~~~~-----------~~~~~~~v~~~~~spdg  300 (301)
                      +|+....+.           ..+ ....+.+++.|++
T Consensus       205 sGrV~~widlS~L~~~~~~~~~~-~nvlNGIA~~~~~  240 (262)
T COG3823         205 SGRVVAWIDLSGLLKELNLDKSN-DNVLNGIAHDPQQ  240 (262)
T ss_pred             CCcEEEEEEccCCchhcCccccc-cccccceeecCcC
Confidence            666555432           112 3356677777764

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.84  E-value=5.1  Score=33.64  Aligned_cols=132  Identities=16%  Similarity=0.116  Sum_probs=71.1

Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  235 (301)
                      ...+..++++.+++.+.....++-||  .+.. -..........+..+.|.+++..      +..+..|.+.. ....++
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l------~l~g~~G~l~~-S~d~G~  311 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGL------WLLTRGGGLYV-SKGTGL  311 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCE------EEEeCCceEEE-ecCCCC
Confidence            44456677887777766543333444  2322 13333334456889999999884      44445565543 233332


Q ss_pred             -----Eeeeeec--cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc--ccccCccEEEEEEccCC
Q 022184          236 -----KIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK--RLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       236 -----~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~~~v~~~~~spdg  300 (301)
                           .......  ....+..+.|.+++..+++| ..|.+..-. ..++.-....  ..- ....+.+.|.+++
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~-~~~ly~v~f~~~~  382 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNI-AANLYSVKFFDDK  382 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCC-CcceeEEEEcCCC
Confidence                 1122211  12358889999887766555 567665554 3333222111  111 4567788887754

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.75  E-value=0.59  Score=24.08  Aligned_cols=29  Identities=24%  Similarity=0.280  Sum_probs=19.3

Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCC---CcEEEE
Q 022184          243 LRKPASVLSISLDGKYLAMGSKD---GDICVV  271 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~  271 (301)
                      ....-....|||||+.|+..+..   |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34456788999999988877543   555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.47  E-value=3.7  Score=39.11  Aligned_cols=137  Identities=14%  Similarity=0.187  Sum_probs=82.1

Q ss_pred             ecCCeEEEEeCCCcceecccccCCccEEEEEe--------cCCCcEEEEEeCCCcEEEEeCCC----Cce---EEEEeec
Q 022184          131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF--------SLDSEFLATTSTDGSARIWKTED----GVA---WTFLTRN  195 (301)
Q Consensus       131 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~d~~i~i~d~~~----~~~---~~~~~~~  195 (301)
                      +-|+.+.+|+.+++.....+.+-...|..+..        .|.=++++..+.--.|.++-+.-    +..   ...+...
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            34789999999986655544444444444432        23334444444445555554321    111   1112211


Q ss_pred             -CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc----Cc------eE--------------eeeee-ccCCCcEE
Q 022184          196 -SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS----TW------NK--------------IGHKR-LLRKPASV  249 (301)
Q Consensus       196 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----~~------~~--------------~~~~~-~~~~~v~~  249 (301)
                       .+..|.++....+|+      ++.+|.||  .+|.+.    .+      ..              +..+. .+..+|..
T Consensus       176 ~dg~~V~~I~~t~nGR------IF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q  247 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGR------IFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ  247 (1311)
T ss_pred             cCCceEEEEEeccCCc------EEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence             244588999888888      46667777  444431    10      00              11222 44678999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          250 LSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       250 ~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      +.....-..+.+-+..|.|.+|++..
T Consensus       248 i~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  248 ITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eEeccccceeeeeccCceEEEEEccC
Confidence            99988888999999999999999975

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.40  E-value=5.6  Score=33.06  Aligned_cols=193  Identities=12%  Similarity=0.049  Sum_probs=98.6

Q ss_pred             eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC-c
Q 022184           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-K  155 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~  155 (301)
                      .+..+..+|.|.-.|.+++..........     ....+..-.+..+|+ |++++.++.++.+|.++|+.+....... -
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-----~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~  143 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLG-----AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP  143 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcC-----cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence            44444678878888877776433221110     011222222233665 7788889999999988888876655443 1


Q ss_pred             cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC--CCCeeEEEEccCCCcceEEEEEEeCC--cceEEEEEc
Q 022184          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDI  231 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~  231 (301)
                      .+.....-.++ .+...+.++.+...|..+++..-......  ...+..-....++.      +..+..  ++.+.-.|.
T Consensus       144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~------vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT------VYVGSDGYDGILYALNA  216 (370)
T ss_pred             EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce------EEEecCCCcceEEEEEc
Confidence            11111222233 33334467888888888888766544322  11111111122232      233333  556777777


Q ss_pred             cCceEeeeeeccC----CCcE-EEEEcC----CCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          232 STWNKIGHKRLLR----KPAS-VLSISL----DGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       232 ~~~~~~~~~~~~~----~~v~-~~~~s~----~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      .+++..-..+...    ..+. ...+..    .+.-++.++.++.+...+..+++.+-..
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~  276 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSF  276 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence            7776653321111    1110 001100    0122355566777888888887766554

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.18  E-value=3.4  Score=30.06  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=24.8

Q ss_pred             cEEEEEecCCC------cEEEEEeCCCcEEEEeCCC
Q 022184          156 SVLDMDFSLDS------EFLATTSTDGSARIWKTED  185 (301)
Q Consensus       156 ~i~~~~~~~~~------~~l~~~~~d~~i~i~d~~~  185 (301)
                      .+..++|+|.|      -.|++.+.++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78999999943      2788899999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.08  E-value=6  Score=37.61  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=28.8

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT   97 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~   97 (301)
                      ......++|+|.-..+|.+...|.|+++-...-+.
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~   69 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF   69 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccceEE
Confidence            34567899999999999999999999998765443

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.95  E-value=0.91  Score=23.34  Aligned_cols=29  Identities=24%  Similarity=0.280  Sum_probs=19.1

Q ss_pred             CCccEEEEEecCCCcEEEEEe-CC--CcEEEE
Q 022184          153 AHKSVLDMDFSLDSEFLATTS-TD--GSARIW  181 (301)
Q Consensus       153 ~~~~i~~~~~~~~~~~l~~~~-~d--~~i~i~  181 (301)
                      ....-....|+|||+.|+.++ .+  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334667889999999887766 34  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=91.74  E-value=9.6  Score=34.32  Aligned_cols=141  Identities=20%  Similarity=0.184  Sum_probs=72.6

Q ss_pred             cCCccEEEEEecCCCcEEEEEeCCC----cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE-EEeCCcce-
Q 022184          152 KAHKSVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT-VQRGDKAL-  225 (301)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~-  225 (301)
                      .....+..+.|+|++..++..+.++    .+.+.+.. +    .+ ......+....|+|++..+..... .....++. 
T Consensus        57 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~-~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~  130 (620)
T COG1506          57 TFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LI-TKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD  130 (620)
T ss_pred             ccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ce-eeeecccccceeCCCCCeEEEEecccccccCCce
Confidence            3445678889999999988877333    23444443 2    11 122334777888888886322100 01111221 


Q ss_pred             ------EEEEEccCc-e-----------EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCc-------EEEEeCCCceeec
Q 022184          226 ------LAVYDISTW-N-----------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGD-------ICVVDVKKMEINH  280 (301)
Q Consensus       226 ------i~~~d~~~~-~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------i~i~~~~~~~~~~  280 (301)
                            +.+|....+ +           ...........+....++++++.++....+..       ..++...++....
T Consensus       131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (620)
T COG1506         131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELES  210 (620)
T ss_pred             eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEE
Confidence                  223322222 1           11122223345666677777777776654432       3333334555444


Q ss_pred             cccccccCccEEEEEEccCCC
Q 022184          281 WSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       281 ~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..  .. ...+..+.|.++|+
T Consensus       211 ~~--~~-~~~~~~~~~~~~gk  228 (620)
T COG1506         211 LT--PG-EGSISKLAFDADGK  228 (620)
T ss_pred             Ec--CC-CceeeeeeeCCCCC
Confidence            43  22 45588888888875

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.63  E-value=5.4  Score=31.21  Aligned_cols=199  Identities=12%  Similarity=0.062  Sum_probs=116.5

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~  143 (301)
                      .....++-.|||..-.++...+.|--.|..+++....       .+........+..-|||..-++-+.. -|.-.|-++
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y-------pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt  133 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY-------PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT  133 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEE-------ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcc
Confidence            3456778888888777777777676677777665222       22233445677788888766654433 455556555


Q ss_pred             cceec-cc--ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184          144 LRIIL-DE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       144 ~~~~~-~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      .+... .+  ...........|.+.|.+-+++.. |.---.|.. ...+..+..+.....+.++-.|+|..     -++.
T Consensus       134 ~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsv-----wyas  206 (353)
T COG4257         134 LEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSV-----WYAS  206 (353)
T ss_pred             cceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcE-----EEEe
Confidence            44321 11  122246788899999998887753 221111211 12234444444555788889999985     2333


Q ss_pred             CCcceEEEEEccCceEe--eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          221 GDKALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      -.+..|-..|..++...  ..-.......+.+--+|.|+.-++....+.+..||.....
T Consensus       207 lagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         207 LAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             ccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence            34556777776655321  1111112334556667888888887777888888876543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.43  E-value=1.2  Score=23.21  Aligned_cols=40  Identities=10%  Similarity=-0.050  Sum_probs=27.3

Q ss_pred             CCCcEEEEEe-CCCcEEEEeCCCCceEEEEeecCCCCeeEEEE
Q 022184          164 LDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (301)
Q Consensus       164 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  205 (301)
                      |++++|+++. .+++|.++|..+++.+..+....  ....+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~--~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG--YPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC--CCceEEe
Confidence            5677665544 57899999999888888776532  2445544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.39  E-value=1.7  Score=38.37  Aligned_cols=76  Identities=20%  Similarity=0.193  Sum_probs=43.7

Q ss_pred             CCCCeEEEEecCCcEEEEEEcCCc---cccc-----------cccccCC-----CCCCCCCeeEEEEee----CCCEEEE
Q 022184           73 PSGDDFVCSTTNGGCKLFEVYGGA---TDIN-----------LLAKKMP-----PLQDAGPQKCLSFSV----DGSRFAA  129 (301)
Q Consensus        73 ~~~~~l~~~~~d~~i~~w~~~~~~---~~~~-----------~~~~~~~-----~~~~~~~v~~~~~s~----~~~~l~~  129 (301)
                      ++...++.+..||.+.........   ....           .......     ..........++.++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            466788888899988888876511   1000           0000000     001123455566666    6788999


Q ss_pred             eecCCeEEEEeCCCcceec
Q 022184          130 GGVDGHLRIMHWPSLRIIL  148 (301)
Q Consensus       130 ~~~dg~i~v~d~~~~~~~~  148 (301)
                      .+.|+.+|+||+.+++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             EETTSEEEEEETTTTCEEE
T ss_pred             EeCCCeEEEEECCCCeEEE
Confidence            9999999999999988843

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.96  E-value=6.2  Score=37.72  Aligned_cols=143  Identities=13%  Similarity=0.246  Sum_probs=82.8

Q ss_pred             CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEE--------CCCCCeEEEEecCCcEEEEEEcCCccccc--c
Q 022184           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV--------NPSGDDFVCSTTNGGCKLFEVYGGATDIN--L  101 (301)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~--~  101 (301)
                      ..||.+-+|.|+.+.. +       ..+.+-...|..+..        .|.=++++....--.|.++-+.-.+....  .
T Consensus        96 TiDn~L~lWny~~~~e-~-------~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~  167 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNE-L-------AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI  167 (1311)
T ss_pred             EeCCeEEEEEcCCCCc-c-------ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence            3789999999987432 1       223444455555543        23334444444445577776654332111  1


Q ss_pred             ccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC--CCc-----c-e----------------ecccc-cCCcc
Q 022184          102 LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW--PSL-----R-I----------------ILDEP-KAHKS  156 (301)
Q Consensus       102 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~--~~~-----~-~----------------~~~~~-~~~~~  156 (301)
                      .......-.....|+++....+|+.+++|- ||.  +|.+  ...     + +                +.++. .+.++
T Consensus       168 f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp  244 (1311)
T KOG1900|consen  168 FNTSFKISVDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP  244 (1311)
T ss_pred             cccceeeecCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence            111111111235688888777887666655 553  4433  110     0 0                11233 34568


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 022184          157 VLDMDFSLDSEFLATTSTDGSARIWKTED  185 (301)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  185 (301)
                      |..++....-..+.+-+..++|.+||+..
T Consensus       245 I~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  245 IRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeEeccccceeeeeccCceEEEEEccC
Confidence            99999998888999999999999999976

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=90.69  E-value=12  Score=33.51  Aligned_cols=160  Identities=15%  Similarity=0.150  Sum_probs=83.3

Q ss_pred             CCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce--ecccccCC-c-cEEEEEecC------CCcEEEEEeC-CC---c
Q 022184          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAH-K-SVLDMDFSL------DSEFLATTST-DG---S  177 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~-~-~i~~~~~~~------~~~~l~~~~~-d~---~  177 (301)
                      ...+..+.|.++++.+++...+|.|.+||...+..  +......+ . -+.+ .|-+      ...++++.+. ++   .
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence            47889999999999999999999999999932221  11111111 1 1111 2222      2335555444 32   4


Q ss_pred             EEEEeC-CCCceEEEEe--ecCCCCeeEEEEcc-CCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc----C--CCc
Q 022184          178 ARIWKT-EDGVAWTFLT--RNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL----R--KPA  247 (301)
Q Consensus       178 i~i~d~-~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~--~~v  247 (301)
                      .+++.+ .....+..+.  ...........|+- +|.. |  .+    .+..|.+|++...+....+...    .  ..+
T Consensus       208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~L-Y--~l----~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~  280 (670)
T PF10395_consen  208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKL-Y--QL----SKKTISSYSIPNFQIQKTISLPSIIDKESDDL  280 (670)
T ss_pred             EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEE-E--EE----eCCEEEEEEcCCceEEEEEEechhhccccccc
Confidence            677777 1222222232  11111233334443 4442 2  22    5778999999887665544332    1  122


Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecc
Q 022184          248 SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (301)
Q Consensus       248 ~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~  281 (301)
                      .++. .|..+.++.+. +++|++.|+.-...+..
T Consensus       281 vSl~-~~s~nRvLLs~-~nkIyLld~~~~siLse  312 (670)
T PF10395_consen  281 VSLK-PPSPNRVLLSV-NNKIYLLDLKFESILSE  312 (670)
T ss_pred             eEee-cCCCCeEEEEc-CCEEEEEeehhhhhhhh
Confidence            2222 22333344332 46899999875444433

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.64  E-value=5.8  Score=29.79  Aligned_cols=106  Identities=10%  Similarity=0.172  Sum_probs=58.7

Q ss_pred             cEEEEEeCCCcEEEEeCCCC--ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc---eEEEE---Ecc--CceE
Q 022184          167 EFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA---LLAVY---DIS--TWNK  236 (301)
Q Consensus       167 ~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~---d~~--~~~~  236 (301)
                      +.|+.+.....|.+|++.+.  .....+.  .-+.|..+.++..|++  ++.+=.-....   .+++|   +..  ...+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDY--lvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDY--LVTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccce--EEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            34444456678999999843  3344444  3457999999999997  22232223333   55664   221  1111


Q ss_pred             ee-eeec---------------------cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          237 IG-HKRL---------------------LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       237 ~~-~~~~---------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      +. .+.+                     ...++.+++..|-.--|++|+ ++++.+|.+....
T Consensus       105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen  105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence            11 1111                     123567777777433455554 3578899876543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.31  E-value=9.5  Score=31.73  Aligned_cols=148  Identities=14%  Similarity=0.028  Sum_probs=79.9

Q ss_pred             EEEEeecCCeEEEEeCCCcceecccccCC--ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEE
Q 022184          126 RFAAGGVDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (301)
Q Consensus       126 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~  203 (301)
                      .++.+..+|.|.-+|..++..+.+.....  ..+..-.+..+|+ ++.++.++.+..+|.++|+.+-.........+...
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            45555778888888888887654322221  1222222222665 77778888999999988888777664430011122


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC---CCcEEEEEcCCCCEEEEeeC--CCcEEEEeCCCcee
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---KPASVLSISLDGKYLAMGSK--DGDICVVDVKKMEI  278 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~--d~~i~i~~~~~~~~  278 (301)
                      ..-.++.      +...+.++.+.-.|..+++..-......   ..+..-....++ .++.+..  ++.+.-+|+.++..
T Consensus       149 ~v~~~~~------v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~  221 (370)
T COG1520         149 PVVGDGT------VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTL  221 (370)
T ss_pred             cEEcCcE------EEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcE
Confidence            2223333      2334467888888888877653332211   111110011223 3444444  55677777766655


Q ss_pred             ecc
Q 022184          279 NHW  281 (301)
Q Consensus       279 ~~~  281 (301)
                      ...
T Consensus       222 ~w~  224 (370)
T COG1520         222 KWS  224 (370)
T ss_pred             eee
Confidence            443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.95  E-value=1.7  Score=22.57  Aligned_cols=41  Identities=22%  Similarity=0.151  Sum_probs=26.9

Q ss_pred             cCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEE
Q 022184          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI  252 (301)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  252 (301)
                      |+++++    .++...++.|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~l----yv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKL----YVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEE----EEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            456653    244456789999999988887776653 33445554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.76  E-value=4.9  Score=27.62  Aligned_cols=114  Identities=11%  Similarity=0.058  Sum_probs=66.3

Q ss_pred             EEEeeCCCEEEEeecCCeEEEEeCCCccee-------cccccCCccEEEEEecC-----CCcEEEEEeCCCcEEEEeCCC
Q 022184          118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRII-------LDEPKAHKSVLDMDFSL-----DSEFLATTSTDGSARIWKTED  185 (301)
Q Consensus       118 ~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~-------~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~  185 (301)
                      -.|......|+.++.-|.|.|.+.......       ..+..-...|++++--+     +...|+.|+ ...+..||+..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN   82 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence            345555556888888899999987543211       12223345677765433     233555555 57899999987


Q ss_pred             CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (301)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  236 (301)
                      ...+.....+  ..+.++.+-.-+...--  ++..+.+..|.-||.+..+.
T Consensus        83 N~d~Fyke~~--DGvn~i~~g~~~~~~~~--l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   83 NSDLFYKEVP--DGVNAIVIGKLGDIPSP--LVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             CchhhhhhCc--cceeEEEEEecCCCCCc--EEEECceEEEEEeCCCCcEE
Confidence            7655443333  23777766432221000  45556677888888765544

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.34  E-value=9.4  Score=30.27  Aligned_cols=137  Identities=11%  Similarity=0.054  Sum_probs=81.7

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~  143 (301)
                      +-+..+.++  +++...+..+.-+++.|+.+...+...     ..+...+.-.++  .-.|++..++..|.-+.+.|+.+
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~-----~~lnt~gyaygv--~vsGn~aYVadlddgfLivdvsd  157 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLI-----GFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCccee-----ccccCCceEEEE--EecCCEEEEeeccCcEEEEECCC
Confidence            345666675  456777777767999999887653221     111112333344  44688888887565577788865


Q ss_pred             ccee---cccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-cCCCCeeEEEEccCCCc
Q 022184          144 LRII---LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTK  211 (301)
Q Consensus       144 ~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~  211 (301)
                      .+..   -+..........++.+  |++-..+..|+-+.+.|+.......-+.. ..+..+.++..+++..+
T Consensus       158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y  227 (370)
T COG5276         158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAY  227 (370)
T ss_pred             CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeE
Confidence            4331   1122222334566666  77788888999999999976544332221 12224777777776554

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=89.30  E-value=12  Score=31.22  Aligned_cols=158  Identities=13%  Similarity=0.180  Sum_probs=85.2

Q ss_pred             cCceeEeeeCCCcceeeeCCceeccccccCCcceEEEE--CC-CCC-eEEEEecCCcEEEEEEcCCccccccccccCCCC
Q 022184           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV--NP-SGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL  109 (301)
Q Consensus        34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~-~~~-~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  109 (301)
                      .+.|++|.+++....+.........+..-...+..+++  +| +|. +++....+|.+..|.+...... .+.......+
T Consensus       126 ~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g-~v~~~lVR~f  204 (381)
T PF02333_consen  126 RNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG-KVSATLVREF  204 (381)
T ss_dssp             T-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS-SEEEEEEEEE
T ss_pred             CCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC-cEeeEEEEEe
Confidence            36799999998765553311100111112234677776  44 455 5556778899999988632211 0111112223


Q ss_pred             CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc-----ceeccccc--CCccEEEEEec--CCCc-EEEEEe-CCCcE
Q 022184          110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-----RIILDEPK--AHKSVLDMDFS--LDSE-FLATTS-TDGSA  178 (301)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~--~~~~i~~~~~~--~~~~-~l~~~~-~d~~i  178 (301)
                      .....+..|........|+.+-++--|.-|+.+..     +.+....+  ....|..++.-  ++++ +|+.++ .+++.
T Consensus       205 ~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf  284 (381)
T PF02333_consen  205 KVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF  284 (381)
T ss_dssp             E-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred             cCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence            33457888888888889999998887777776522     12211111  22467788774  3443 555555 56789


Q ss_pred             EEEeCCCC-ceEEEE
Q 022184          179 RIWKTEDG-VAWTFL  192 (301)
Q Consensus       179 ~i~d~~~~-~~~~~~  192 (301)
                      .+|+.+.. ..+..+
T Consensus       285 ~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  285 AVYDREGPNAYVGSF  299 (381)
T ss_dssp             EEEESSTT--EEEEE
T ss_pred             EEEecCCCCcccceE
Confidence            99998753 334444

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.06  E-value=19  Score=33.34  Aligned_cols=162  Identities=12%  Similarity=0.072  Sum_probs=88.0

Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccC----CCCC-CCCCeeEEEEee--CCCEEEEeec----------CCeEE
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKM----PPLQ-DAGPQKCLSFSV--DGSRFAAGGV----------DGHLR  137 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~----~~~~-~~~~v~~~~~s~--~~~~l~~~~~----------dg~i~  137 (301)
                      +..++.++.|+.+.-.|.++++....+-....    ..+. ....-..+.-.|  .+..+++|+.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            45777888899888888888876443211000    0000 000001111122  2345666642          68899


Q ss_pred             EEeCCCcceecccccC---------Cc--------cE-EEEEecCCCcEEEEEe------------------CCCcEEEE
Q 022184          138 IMHWPSLRIILDEPKA---------HK--------SV-LDMDFSLDSEFLATTS------------------TDGSARIW  181 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~---------~~--------~i-~~~~~~~~~~~l~~~~------------------~d~~i~i~  181 (301)
                      -+|.++|+.+..+...         .+        .+ ..++++|+...++...                  ..+.|.-.
T Consensus       340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL  419 (764)
T TIGR03074       340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL  419 (764)
T ss_pred             EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence            9999999887554311         00        11 2234455444433321                  12457777


Q ss_pred             eCCCCceEEEEee-cCCC-------CeeEEEEcc-CCCcceEEEEEEeCCcceEEEEEccCceEee
Q 022184          182 KTEDGVAWTFLTR-NSDE-------KIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (301)
Q Consensus       182 d~~~~~~~~~~~~-~~~~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  238 (301)
                      |.++|+..-.++. +|+.       ...-+.+.. +|+.  .-.++.+..+|.+.++|.++++.+.
T Consensus       420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~--~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTT--VPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             eCCCCceEEEecccCCccccccccCCceEEeeecCCCcE--eeEEEEECCCCEEEEEECCCCCEEe
Confidence            8888888766654 3321       111222332 5532  1126888999999999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.80  E-value=9.4  Score=29.56  Aligned_cols=141  Identities=11%  Similarity=0.005  Sum_probs=73.4

Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-C--CcEEEEeCCC----CceEEEEe-ecCCCCeeEEEEcc
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-D--GSARIWKTED----GVAWTFLT-RNSDEKIELCRFSK  207 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~----~~~~~~~~-~~~~~~v~~~~~~~  207 (301)
                      -.+||+.+++..........-..+-.+.|||++|.+|+. +  ..+++++...    ........ ......-....--|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            356888776543211111122333457789999999874 2  3578887644    11111000 11222344556678


Q ss_pred             CCCcceEEEEEEeCCc-ceEEEEEccCc--eEee--eeec----c-CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          208 DGTKPFLFCTVQRGDK-ALLAVYDISTW--NKIG--HKRL----L-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       208 ~~~~~~~~~~~~~~~~-~~i~~~d~~~~--~~~~--~~~~----~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      ||+.     ++.++.. ....+|..+..  ....  .+..    . ..---.+-..|+|++++.+..+  -.|||..+.+
T Consensus       128 DG~v-----lIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~  200 (243)
T PF07250_consen  128 DGRV-----LIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNT  200 (243)
T ss_pred             CCCE-----EEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCe
Confidence            8886     3444443 44555554221  1111  0110    0 1112245668999999998765  4677888887


Q ss_pred             eecccc
Q 022184          278 INHWSK  283 (301)
Q Consensus       278 ~~~~~~  283 (301)
                      .++.+.
T Consensus       201 v~~~lP  206 (243)
T PF07250_consen  201 VVRTLP  206 (243)
T ss_pred             EEeeCC
Confidence            655543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.04  E-value=3.8  Score=34.41  Aligned_cols=156  Identities=10%  Similarity=0.072  Sum_probs=85.0

Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec-ccccC-Cc----cEE-EEEecCCCcEEEEEeCCCcEEEE-eCC
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-DEPKA-HK----SVL-DMDFSLDSEFLATTSTDGSARIW-KTE  184 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~-~~----~i~-~~~~~~~~~~l~~~~~d~~i~i~-d~~  184 (301)
                      ..+..+-..|||+.+..-+. .++.++++.+..... ++... .+    .|+ .+..-..|..++.++.||-|.-| |.+
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr  299 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR  299 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence            45677888999998877664 778888886543211 11111 11    122 11122345668888888888766 554


Q ss_pred             CCceE-----EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEE
Q 022184          185 DGVAW-----TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL  259 (301)
Q Consensus       185 ~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  259 (301)
                      .+...     +.++. .+..+..  ..|+.+.--   .+.-...|.+.++.....+.+- +...-..+.-+++||++.++
T Consensus       300 ~~~~p~l~h~R~f~l-~pa~~~~--l~pe~~rkg---F~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~L  372 (733)
T COG4590         300 RDGQPHLNHIRNFKL-APAEVQF--LLPETNRKG---FYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYL  372 (733)
T ss_pred             cCCCCcceeeecccc-Cccccee--eccccccce---EEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchh
Confidence            33221     11110 0111221  223322211   2344556667766544433332 22222356778999999998


Q ss_pred             EEeeCCCcEEEEeCCCce
Q 022184          260 AMGSKDGDICVVDVKKME  277 (301)
Q Consensus       260 ~~~~~d~~i~i~~~~~~~  277 (301)
                      ++-. .|.++++.+++..
T Consensus       373 l~e~-~gki~~~~l~Nr~  389 (733)
T COG4590         373 LSED-QGKIRLAQLENRN  389 (733)
T ss_pred             eeec-CCceEEEEecCCC
Confidence            8764 4789999987653

>PRK13613 lipoprotein LpqB; Provisional

Probab=87.30  E-value=21  Score=31.92  Aligned_cols=156  Identities=17%  Similarity=0.137  Sum_probs=0.0

Q ss_pred             CeeEEEEeeCCCEEEEeecCC-eEEEEeCCCcce----ecccccCCccEEEEEecCCCcEEEEEeC----CCcEEEEeCC
Q 022184          114 PQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTST----DGSARIWKTE  184 (301)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg-~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~  184 (301)
                      .+.+++.++++..++....++ .+++..+..+..    ......... ++.-.|.+++ .+-+...    ...+++..- 
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~-Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-  440 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGR-LTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-  440 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCc-ccCCcCcCCC-CEEEecCCCCCceEEEEEcC-


Q ss_pred             CCceEEEEeecCCC-CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE-------eeeeeccCCCcEEEEEcCCC
Q 022184          185 DGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-------IGHKRLLRKPASVLSISLDG  256 (301)
Q Consensus       185 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~v~~~~~s~~~  256 (301)
                      +++....-.....+ .|..+..|+||....+  ++.....++|.+=-+.....       ...+......+.+++|..++
T Consensus       441 ~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAv--v~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~  518 (599)
T PRK13613        441 DGEPVEVRTPELDGHRVVAVRVARDGVRVAL--IVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDS  518 (599)
T ss_pred             CCcEEEeeccccCCCEeEEEEECCCccEEEE--EEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCC


Q ss_pred             CEEEEeeCCC-cEEEEeCC
Q 022184          257 KYLAMGSKDG-DICVVDVK  274 (301)
Q Consensus       257 ~~l~~~~~d~-~i~i~~~~  274 (301)
                      .+++.+...+ ...+|-+.
T Consensus       519 sL~Vlg~~~~~~~~v~~v~  537 (599)
T PRK13613        519 QLVVLGREEGGVQQARYVQ  537 (599)
T ss_pred             EEEEEeccCCCCcceEEEe

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=86.48  E-value=4.6  Score=25.62  Aligned_cols=45  Identities=18%  Similarity=0.099  Sum_probs=29.8

Q ss_pred             EEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee
Q 022184          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS  263 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  263 (301)
                      ..+..+|.+.-||..+++....+... .-.+.+++++|+.+++++-
T Consensus        31 le~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   31 LEGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             HHT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEE
T ss_pred             ecCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEe
Confidence            44556789999999998754333332 3568899999999887774

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PLN02193 nitrile-specifier protein

Probab=86.26  E-value=21  Score=30.89  Aligned_cols=150  Identities=11%  Similarity=0.065  Sum_probs=70.5

Q ss_pred             CCCEEEEeecC-----CeEEEEeCCCcceeccccc---CCc-cEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCCce
Q 022184          123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDEPK---AHK-SVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVA  188 (301)
Q Consensus       123 ~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~---~~~-~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~  188 (301)
                      ++++.+.|+.+     ..+..||+.+.+-......   ... .-.+++. -++++++.|+.++     .+..||+.+.+-
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            56666777654     3578888876543221111   011 1112222 2566777776543     467788776543


Q ss_pred             EEEEee--cCCCC-eeEEEEccCCCcceEEEEEEeCCc----ceEEEEEccCceEeeeeec---cCCCcEEEEEcCCCCE
Q 022184          189 WTFLTR--NSDEK-IELCRFSKDGTKPFLFCTVQRGDK----ALLAVYDISTWNKIGHKRL---LRKPASVLSISLDGKY  258 (301)
Q Consensus       189 ~~~~~~--~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~  258 (301)
                      ...-..  ....+ -..++ .-+++. +    +.++.+    ..+.+||+.+.+-......   ........+..-++++
T Consensus       307 ~~~~~~~~~~~~R~~~~~~-~~~gki-y----viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~i  380 (470)
T PLN02193        307 FHCSTPGDSFSIRGGAGLE-VVQGKV-W----VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHI  380 (470)
T ss_pred             EeCCCCCCCCCCCCCcEEE-EECCcE-E----EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEE
Confidence            321110  00000 01111 123442 2    223322    5689999887543211110   1111111122235677


Q ss_pred             EEEeeCC--------------CcEEEEeCCCceee
Q 022184          259 LAMGSKD--------------GDICVVDVKKMEIN  279 (301)
Q Consensus       259 l~~~~~d--------------~~i~i~~~~~~~~~  279 (301)
                      ++.|+.+              +.+.+||+.+.+..
T Consensus       381 yv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~  415 (470)
T PLN02193        381 VIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE  415 (470)
T ss_pred             EEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence            7787753              24889998876544

>PRK13615 lipoprotein LpqB; Provisional

Probab=85.88  E-value=24  Score=31.20  Aligned_cols=154  Identities=10%  Similarity=0.082  Sum_probs=90.0

Q ss_pred             eEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEE-EEe
Q 022184          116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWT-FLT  193 (301)
Q Consensus       116 ~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~  193 (301)
                      .+++.++++..++....++.+.++......  ..+. ....++.-.|.+++ .+-+...+...++..... +.... ...
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~--~~~~-~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~  412 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGDRDA--VLLD-TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS  412 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCCCcc--eeec-cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence            678999999998888778878877655221  1121 12346677788877 555554444455544432 33321 112


Q ss_pred             ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc--Cc--eEe----eeeeccCCCcEEEEEcCCCCEEEEe---
Q 022184          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TW--NKI----GHKRLLRKPASVLSISLDGKYLAMG---  262 (301)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~--~~~----~~~~~~~~~v~~~~~s~~~~~l~~~---  262 (301)
                      ...+..|..+..|+||....+  ++.....++|.+--+.  .+  ..+    ..+......+.++.|..++.+.+.+   
T Consensus       413 ~~~~~~I~~lrvSrDG~R~Av--i~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~  490 (557)
T PRK13615        413 WTATGRVVSLEVARDGARVLV--QLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAP  490 (557)
T ss_pred             ccCCCeeEEEEeCCCccEEEE--EEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccC
Confidence            223457999999999998443  3334445666663322  22  112    1111122478999999998876665   


Q ss_pred             eCCCcEEEEeCCC
Q 022184          263 SKDGDICVVDVKK  275 (301)
Q Consensus       263 ~~d~~i~i~~~~~  275 (301)
                      +.+..+++..+..
T Consensus       491 ~~~~~v~~v~v~g  503 (557)
T PRK13615        491 DGERQVELHQVGG  503 (557)
T ss_pred             CCCceEEEEECCC
Confidence            2335677777763

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=85.66  E-value=33  Score=32.50  Aligned_cols=75  Identities=17%  Similarity=0.300  Sum_probs=45.9

Q ss_pred             CceeEEEeeeecC---CCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEE---CCCC--
Q 022184            4 GGTVTCGSWIKRP---ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV---NPSG--   75 (301)
Q Consensus         4 ~~~v~~~~w~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~---~~~~--   75 (301)
                      ...|.|++..+++   .+.+++++|.      .++.+++..+++...-..-      ..++-..++.++.+   ..++  
T Consensus       582 ~~~vac~ai~~~~~g~krsrfla~a~------~d~~vriisL~p~d~l~~l------s~q~l~~~~~s~~iv~~~~~~~~  649 (1205)
T KOG1898|consen  582 STDVACLAIGQDPEGEKRSRFLALAS------VDNMVRIISLDPSDCLQPL------SVQGLSSPPESLCIVEMEATGGT  649 (1205)
T ss_pred             ceeehhhccCCCCcchhhcceeeeec------cccceeEEEecCcceEEEc------cccccCCCccceEEEEecccCCc
Confidence            4568899999888   3457888866      7888899999976643322      22333444444444   2233  


Q ss_pred             ---C-eEEEEecCCcEEEE
Q 022184           76 ---D-DFVCSTTNGGCKLF   90 (301)
Q Consensus        76 ---~-~l~~~~~d~~i~~w   90 (301)
                         + +|.+|-.+|.+.-+
T Consensus       650 ~~~~L~l~~GL~NGvllR~  668 (1205)
T KOG1898|consen  650 DVAQLYLLIGLRNGVLLRF  668 (1205)
T ss_pred             cceeEEEEecccccEEEEE
Confidence               1 55566666654444

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.43  E-value=18  Score=29.37  Aligned_cols=67  Identities=10%  Similarity=0.060  Sum_probs=34.3

Q ss_pred             CCCeEEEEec-----CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC----eEEEEeCCCc
Q 022184           74 SGDDFVCSTT-----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSL  144 (301)
Q Consensus        74 ~~~~l~~~~~-----d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~v~d~~~~  144 (301)
                      +++..+.|+.     ...+..||+.+.+-.  .    ...+.............++++.+.|+.++    .+..||..+.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~--~----~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWF--E----LPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCee--E----CCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            4566666654     235777777655421  1    11111111112223344677778887653    3567888765


Q ss_pred             ce
Q 022184          145 RI  146 (301)
Q Consensus       145 ~~  146 (301)
                      +-
T Consensus       197 ~W  198 (323)
T TIGR03548       197 QW  198 (323)
T ss_pred             ee
Confidence            43

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=85.38  E-value=20  Score=29.65  Aligned_cols=154  Identities=14%  Similarity=0.073  Sum_probs=0.0

Q ss_pred             EEEEeeCCCEEEEeecCCeEEEEeC--CCcceecc---cccCC---ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 022184          117 CLSFSVDGSRFAAGGVDGHLRIMHW--PSLRIILD---EPKAH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (301)
Q Consensus       117 ~~~~s~~~~~l~~~~~dg~i~v~d~--~~~~~~~~---~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  188 (301)
                      ++..+.+...+.+|..+|.|..-+.  .+......   .....   +....++|...+.-|+.+..=--+...+...+..
T Consensus        69 ~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a  148 (376)
T KOG1520|consen   69 YTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLA  148 (376)
T ss_pred             eEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcc


Q ss_pred             EEEEeecCCCCee-----------EEEEccCCC----cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEc
Q 022184          189 WTFLTRNSDEKIE-----------LCRFSKDGT----KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (301)
Q Consensus       189 ~~~~~~~~~~~v~-----------~~~~~~~~~----~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  253 (301)
                      ........+.++.           .+-|.....    ..+++.+..+..+|++.-||..+ +....+...-.-.+.++.|
T Consensus       149 ~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t-K~~~VLld~L~F~NGlaLS  227 (376)
T KOG1520|consen  149 ELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST-KVTKVLLDGLYFPNGLALS  227 (376)
T ss_pred             eeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcc-cchhhhhhcccccccccCC


Q ss_pred             CCCCEEEEe--eCCCcEEEE
Q 022184          254 LDGKYLAMG--SKDGDICVV  271 (301)
Q Consensus       254 ~~~~~l~~~--~~d~~i~i~  271 (301)
                      ||+.+++.+  +.....+.|
T Consensus       228 ~d~sfvl~~Et~~~ri~ryw  247 (376)
T KOG1520|consen  228 PDGSFVLVAETTTARIKRYW  247 (376)
T ss_pred             CCCCEEEEEeeccceeeeeE

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=85.38  E-value=11  Score=34.08  Aligned_cols=164  Identities=15%  Similarity=0.158  Sum_probs=0.0

Q ss_pred             eeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEe
Q 022184          115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLT  193 (301)
Q Consensus       115 v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~  193 (301)
                      +.++.-+|.+..++.+..||.|++|++..... .++-....+-..+.|...|  |++...|..+.-|.-.. -+....+.
T Consensus        17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q-ski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqqfdyn   93 (1636)
T KOG3616|consen   17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ-SKICEEAKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQFDYN   93 (1636)
T ss_pred             eeeeeecCCCceEEEEecCCcEEEEeecccch-hhhhhhcCCccceeeeccc--eEEEeccchhheeeccCcchhhcccc


Q ss_pred             ecCCCCeeEEEEccCCCcceEEEEEEeC--------------------------CcceEEEEEccCceEeeeeeccCCCc
Q 022184          194 RNSDEKIELCRFSKDGTKPFLFCTVQRG--------------------------DKALLAVYDISTWNKIGHKRLLRKPA  247 (301)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~i~~~d~~~~~~~~~~~~~~~~v  247 (301)
                      ........++...|..+.      +.+.                          ....|.+-|+.++.....+....-.|
T Consensus        94 dqsekefss~~cdptaqn------vvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~ai  167 (1636)
T KOG3616|consen   94 DQSEKEFSSILCDPTAQN------VVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGLAI  167 (1636)
T ss_pred             chhhhhccceecCchhhh------hhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCcch


Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCc
Q 022184          248 SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (301)
Q Consensus       248 ~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~  289 (301)
                      ..+..-...+|++.-+.. +|.|=|+.+........++. .+
T Consensus       168 delkilgkdryli~~ts~-siii~d~es~rfsei~wqgs-gg  207 (1636)
T KOG3616|consen  168 DELKILGKDRYLIAHTSE-SIIIADLESNRFSEIAWQGS-GG  207 (1636)
T ss_pred             hhhhhccccceEEeeccc-cEEEeecccchhhhhhcccC-CC

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.37  E-value=24  Score=30.67  Aligned_cols=119  Identities=8%  Similarity=-0.061  Sum_probs=54.9

Q ss_pred             EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC--CCeeEEEEccCCCcceEEEE--------EEeCCcceEEEE
Q 022184          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLFCT--------VQRGDKALLAVY  229 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~  229 (301)
                      +...++|.+++...  ..+..+|+- |+.+........  ..=..+..-|+|+.+++...        -.....-.|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            56678888776554  788888884 555555443221  01245667788876432210        000011224444


Q ss_pred             EccCceEeeeee---------c-------------cC-----CCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeecc
Q 022184          230 DISTWNKIGHKR---------L-------------LR-----KPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHW  281 (301)
Q Consensus       230 d~~~~~~~~~~~---------~-------------~~-----~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~  281 (301)
                      | .+++.+....         .             ..     -.++++.+.+ ++.+|+++-....|...|.++++....
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            4 4444321110         0             00     2578999999 556666665566899999888876654


Q ss_pred             c
Q 022184          282 S  282 (301)
Q Consensus       282 ~  282 (301)
                      +
T Consensus       309 l  309 (477)
T PF05935_consen  309 L  309 (477)
T ss_dssp             E
T ss_pred             e
Confidence            4

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=84.82  E-value=20  Score=29.20  Aligned_cols=65  Identities=6%  Similarity=0.027  Sum_probs=33.3

Q ss_pred             CCCEEEEeecC-----CeEEEEeCCCccee---cccccCCccE--EEEEecCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 022184          123 DGSRFAAGGVD-----GHLRIMHWPSLRII---LDEPKAHKSV--LDMDFSLDSEFLATTSTD-----GSARIWKTEDGV  187 (301)
Q Consensus       123 ~~~~l~~~~~d-----g~i~v~d~~~~~~~---~~~~~~~~~i--~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~  187 (301)
                      ++.+++.|+.+     ..+..+|+.+.+..   ..+..-..+.  .+++. -++++++.|+..     ..+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            56667777654     35667777655421   1111111111  12222 256667776642     358888887765


Q ss_pred             e
Q 022184          188 A  188 (301)
Q Consensus       188 ~  188 (301)
                      -
T Consensus       151 W  151 (323)
T TIGR03548       151 W  151 (323)
T ss_pred             e
Confidence            4

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=83.96  E-value=31  Score=30.86  Aligned_cols=117  Identities=14%  Similarity=0.095  Sum_probs=66.4

Q ss_pred             CeeEEEEeeCCCEEEEe-----ecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCc---EEEEe--C
Q 022184          114 PQKCLSFSVDGSRFAAG-----GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS---ARIWK--T  183 (301)
Q Consensus       114 ~v~~~~~s~~~~~l~~~-----~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~---i~i~d--~  183 (301)
                      .+-.++.|||.++++.+     ++.-++++-|+.+++......  .+-...++|.+|++.|.-...|..   =++|-  +
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~  207 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRL  207 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEecCCCeEEEEEEcCCCCcceEEEEec
Confidence            35567888999988765     344578999999988654332  233567899999986665554432   23333  3


Q ss_pred             CC--CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184          184 ED--GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (301)
Q Consensus       184 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  234 (301)
                      .+  ......+..........+.-+.+.++  ++..+.....+.+++.+....
T Consensus       208 gt~~~~d~lvyeE~d~~f~~~v~~s~s~~y--i~i~~~~~~tsE~~ll~a~~p  258 (682)
T COG1770         208 GTPGSSDELVYEEKDDRFFLSVGRSRSEAY--IVISLGSHITSEVRLLDADDP  258 (682)
T ss_pred             CCCCCcceEEEEcCCCcEEEEeeeccCCce--EEEEcCCCcceeEEEEecCCC
Confidence            22  12222233233322334444455554  322334455667888887654

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=83.47  E-value=9.1  Score=24.29  Aligned_cols=37  Identities=11%  Similarity=-0.040  Sum_probs=25.1

Q ss_pred             eCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       173 ~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      ..+|.+.-||..+++....+..-.  ..+.+++++|+..
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L~--fpNGVals~d~~~   70 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGLY--FPNGVALSPDESF   70 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEES--SEEEEEE-TTSSE
T ss_pred             CCCcCEEEEECCCCeEEEehhCCC--ccCeEEEcCCCCE
Confidence            346788899998887655554332  3789999999996

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=83.41  E-value=3.5  Score=19.42  Aligned_cols=25  Identities=16%  Similarity=0.240  Sum_probs=16.2

Q ss_pred             cEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184          247 ASVLSISLDGKYLAMGSKDGDICVV  271 (301)
Q Consensus       247 v~~~~~s~~~~~l~~~~~d~~i~i~  271 (301)
                      ...++++++|+.+++=....+|.+|
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            3567777777766666666666654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>smart00564 PQQ beta-propeller repeat

Probab=82.59  E-value=3.4  Score=20.03  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=19.5

Q ss_pred             EEEEeecCCeEEEEeCCCcceecc
Q 022184          126 RFAAGGVDGHLRIMHWPSLRIILD  149 (301)
Q Consensus       126 ~l~~~~~dg~i~v~d~~~~~~~~~  149 (301)
                      .+++++.+|.+..+|.++|+.+.+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            677788899999999988876543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=82.48  E-value=12  Score=34.76  Aligned_cols=84  Identities=21%  Similarity=0.202  Sum_probs=51.0

Q ss_pred             EEEee-cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEE-EeCCC-----cEEEEeCCCC-ceEEEEeecCCC
Q 022184          127 FAAGG-VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDG-----SARIWKTEDG-VAWTFLTRNSDE  198 (301)
Q Consensus       127 l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~-----~i~i~d~~~~-~~~~~~~~~~~~  198 (301)
                      |+... ..+.|.+-|...............+|.+.+|+|||+.|+. .+..+     .|.+-++++. ..+..+... ..
T Consensus       321 iAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve-~a  399 (912)
T TIGR02171       321 LAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVE-NA  399 (912)
T ss_pred             EEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecc-cc
Confidence            44444 3358888888765554321455678999999999999988 44333     4788888753 223333322 22


Q ss_pred             CeeEEEEccCCCc
Q 022184          199 KIELCRFSKDGTK  211 (301)
Q Consensus       199 ~v~~~~~~~~~~~  211 (301)
                      .|..-...++|..
T Consensus       400 aiprwrv~e~gdt  412 (912)
T TIGR02171       400 AIPRWRVLENGDT  412 (912)
T ss_pred             cccceEecCCCCe
Confidence            3444445555554

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=82.20  E-value=34  Score=30.03  Aligned_cols=222  Identities=11%  Similarity=0.040  Sum_probs=0.0

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      ..+|..+.+..+| .+-.|+.|| +..||..+++.      -......-..+|..+.-+-.|+ +.+|+.+| +++.+.+
T Consensus       164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gka------lql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~  233 (671)
T COG3292         164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKA------LQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAE  233 (671)
T ss_pred             CccceeeeeeccC-cEEEecCCc-ceEEccccceE------EEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchh


Q ss_pred             CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC-CeeEEEEccCCCcceEEEEEEeC
Q 022184          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                      ..+.......-....-.+........+-.|+..|..+.---+.+-.....+.++.. .+..+....+|.      +..+.
T Consensus       234 G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs------LWv~t  307 (671)
T COG3292         234 GWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS------LWVGT  307 (671)
T ss_pred             hccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC------Eeeec


Q ss_pred             CcceEEEEEccCceEeeeeeccCCCcEEEEEcC--CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      .++.+++-+-.-.............+...+-.|  .+..+-....-|.+.+-+-.+++......... ...|+.+++..+
T Consensus       308 ~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~R-g~nit~~~~d~~  386 (671)
T COG3292         308 YGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLR-GMNITTTLEDSR  386 (671)
T ss_pred             cCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecc-ccccchhhhccC


Q ss_pred             CC
Q 022184          300 QR  301 (301)
Q Consensus       300 g~  301 (301)
                      |+
T Consensus       387 g~  388 (671)
T COG3292         387 GR  388 (671)
T ss_pred             Cc

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=81.93  E-value=25  Score=28.17  Aligned_cols=173  Identities=11%  Similarity=0.109  Sum_probs=85.9

Q ss_pred             ceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC-----CeEEEEe-cCCcEEEEEEcCCccccccccccCC--
Q 022184           36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-----DDFVCST-TNGGCKLFEVYGGATDINLLAKKMP--  107 (301)
Q Consensus        36 ~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~--  107 (301)
                      .-+|+.||..+.++..........-........+.+....     .++..+. ..+-|.++|+.+++.-..... ...  
T Consensus        33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~  111 (287)
T PF03022_consen   33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN-SFSPD  111 (287)
T ss_dssp             --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC-GCTTS
T ss_pred             CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC-Cccee
Confidence            3466666666655543222221122235567888886622     2333333 335799999988765221111 111  


Q ss_pred             -----------CCCCCCCeeEEEEee---CCCEEEEeecCCeEEEEeCCC-----cce---e-----cccccC-CccEEE
Q 022184          108 -----------PLQDAGPQKCLSFSV---DGSRFAAGGVDGHLRIMHWPS-----LRI---I-----LDEPKA-HKSVLD  159 (301)
Q Consensus       108 -----------~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~v~d~~~-----~~~---~-----~~~~~~-~~~i~~  159 (301)
                                 .+.....+..++.+|   +++.|....-.+ -++|.+++     ...   .     .+..+. ......
T Consensus       112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g  190 (287)
T PF03022_consen  112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDG  190 (287)
T ss_dssp             -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECE
T ss_pred             ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCce
Confidence                       111123467777766   666776665433 22333221     110   0     011111 135567


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEeCCCC---ceEEEEeecC--CCCeeEEEEcc--CCC
Q 022184          160 MDFSLDSEFLATTSTDGSARIWKTEDG---VAWTFLTRNS--DEKIELCRFSK--DGT  210 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~--~~~v~~~~~~~--~~~  210 (301)
                      ++++++|.++++--..+.|..|+..+.   +....+....  -..+..+.+.+  +|.
T Consensus       191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~  248 (287)
T PF03022_consen  191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY  248 (287)
T ss_dssp             EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred             EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce
Confidence            888999999989889999999998762   1223332222  23567888888  555

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=81.57  E-value=26  Score=28.23  Aligned_cols=137  Identities=19%  Similarity=0.189  Sum_probs=0.0

Q ss_pred             eecCCeEEEEeCCCcceecccccCC------------ccEEEEEecCCCcEEEEEeC------------------CCcEE
Q 022184          130 GGVDGHLRIMHWPSLRIILDEPKAH------------KSVLDMDFSLDSEFLATTST------------------DGSAR  179 (301)
Q Consensus       130 ~~~dg~i~v~d~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~l~~~~~------------------d~~i~  179 (301)
                      |-..|.+.+.| .+.+.+.++....            .....+.+.++|+.|++.-.                  |+.+.
T Consensus        21 g~g~G~~~~lD-~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~   99 (299)
T PF14269_consen   21 GYGYGSYVILD-SSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQ   99 (299)
T ss_pred             ccccceEEEEC-CCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeE


Q ss_pred             EEeCCCCceEEEEeecCCCC--------------------------eeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          180 IWKTEDGVAWTFLTRNSDEK--------------------------IELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       180 i~d~~~~~~~~~~~~~~~~~--------------------------v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      -.|+.+++.+.......--.                          ++++...++|.+     +++...-..|.+.|.++
T Consensus       100 EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~y-----LiS~R~~~~i~~I~~~t  174 (299)
T PF14269_consen  100 EIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDY-----LISSRNTSTIYKIDPST  174 (299)
T ss_pred             EeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccE-----EEEecccCEEEEEECCC


Q ss_pred             ceEeeeeeccCCCcEE-----EEEcCCCCEEEEeeCCCcEEEEe
Q 022184          234 WNKIGHKRLLRKPASV-----LSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       234 ~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      ++.+-.+.+....-..     .+|-.|-+++-.+..++.|.+||
T Consensus       175 G~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD  218 (299)
T PF14269_consen  175 GKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD  218 (299)
T ss_pred             CcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=81.45  E-value=46  Score=30.97  Aligned_cols=68  Identities=15%  Similarity=-0.002  Sum_probs=43.8

Q ss_pred             ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE----ee--------------cCCCCeeEEEEccCCCcceEEE
Q 022184          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL----TR--------------NSDEKIELCRFSKDGTKPFLFC  216 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~--------------~~~~~v~~~~~~~~~~~~~~~~  216 (301)
                      +.|.++....-+..++..-.||+|.++|-.+.+.+...    ..              +...++..++|||.+..     
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~-----  334 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCS-----  334 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccce-----
Confidence            35667777667778999999999999998876554433    10              00112335778888875     


Q ss_pred             EEEeCCcceEE
Q 022184          217 TVQRGDKALLA  227 (301)
Q Consensus       217 ~~~~~~~~~i~  227 (301)
                      ++.-..++.+.
T Consensus       335 ~v~~~~~~~~~  345 (753)
T PF11635_consen  335 LVQIDEDGKTK  345 (753)
T ss_pred             EEEEecCCCce
Confidence            44445555544

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		6e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		9e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-04
2h9l_A	329	Wdr5delta23 Length = 329		1e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-04

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
            S DG    +G  DG LR+    +           K VL + FS D+  + + S D + +
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----N 235
           +W T     +T    +  E +   RFS + + P +   V  G   L+ V++++      N
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKTN 210
Query: 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
            IGH   L    + +++S DG   A G KDG   + D+ +
Sbjct: 211 HIGHTGYL----NTVTVSPDGSLCASGGKDGQAMLWDLNE 246

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
            S DG    +G  DG LR+    +           K VL + FS D+  + + S D + +
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----N 235
           +W T     +T    +  E +   RFS + + P +   V  G   L+ V++++      N
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKTN 187
Query: 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
            IGH   L    + +++S DG   A G KDG   + D+ +
Sbjct: 188 HIGHTGYL----NTVTVSPDGSLCASGGKDGQAMLWDLNE 223

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 93/243 (38%), Gaps = 32/243 (13%)
Query: 34  PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
           P+++++   +P+T+ VY    +     + EGD                    G    E  
Sbjct: 561 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 598
Query: 94  GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
              T  NL    + P  DA    C  FS DG R A+ G D  L++    +   +LD    
Sbjct: 599 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 656
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
              VL   FS D  ++AT S D   +IW +  G        +S E++  C F+       
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 715
Query: 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV--LSISLDGKYLAMGSKDGDICVV 271
           L       +   L ++D++   K     +     SV     S D + LA  S DG + + 
Sbjct: 716 L---ATGSNDFFLKLWDLN--QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Query: 272 DVK 274
           DV+
Sbjct: 771 DVR 773

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 93/243 (38%), Gaps = 32/243 (13%)
Query: 34  PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
           P+++++   +P+T+ VY    +     + EGD                    G    E  
Sbjct: 568 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 605
Query: 94  GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
              T  NL    + P  DA    C  FS DG R A+ G D  L++    +   +LD    
Sbjct: 606 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 663
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
              VL   FS D  ++AT S D   +IW +  G        +S E++  C F+       
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 722
Query: 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV--LSISLDGKYLAMGSKDGDICVV 271
           L       +   L ++D++   K     +     SV     S D + LA  S DG + + 
Sbjct: 723 L---ATGSNDFFLKLWDLN--QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Query: 272 DVK 274
           DV+
Sbjct: 778 DVR 780

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 289 ISTACHPTEN 298

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 289 ISTACHPTEN 298

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 248
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 249 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 304
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 305 ISTACHPTEN 314

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 177 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 231
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 232 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 287
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 288 ISTACHPTEN 297

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 196 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 250
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 251 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 306
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 307 ISTACHPTEN 316

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 171 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 225
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 226 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 281
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 282 ISTACHPTEN 291

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 226
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 227 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 282
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 283 ISTACHPTEN 292

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 289 ISTACHPTEN 298

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 173 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 227
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 228 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 283
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 284 ISTACHPTEN 293

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 226
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 227 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 282
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 283 ISTACHPTEN 292

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 168 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 222
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 223 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 278
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 279 ISTACHPTEN 288

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 189 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 243
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 244 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 299
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 300 ISTACHPTEN 309

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 286 ISTACHPTEN 295

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 286 ISTACHPTEN 295

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 286 ISTACHPTEN 295

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    +   +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDND----LKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNMVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 286 ISTACHPTEN 295

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    +   +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNMVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQR 301
           +   C PT+ 
Sbjct: 286 ISTACHPTEN 295

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.88
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.87
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.82
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.78
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.78
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.78
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.77
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.76
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.74
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.73
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.73
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.72
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.72
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.71
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.71
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.69
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.67
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.67
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.66
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.65
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.65
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.63
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.63
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.6
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.6
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.59
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.59
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.58
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.58
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.54
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.54
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.51
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.5
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.49
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.48
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.45
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.38
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.38
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.37
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.33
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.32
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.27
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.22
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.22
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.21
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.18
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.15
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.12
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.08
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.07
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.07
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.06
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.05
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.05
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.02
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.0
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.98
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.97
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.96
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.94
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.93
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.91
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.91
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.88
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.87
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.86
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.84
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.83
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.83
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.8
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.8
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.8
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.78
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.78
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.77
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.76
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.75
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.75
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.7
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.68
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.66
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.62
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.6
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.59
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.54
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.52
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.51
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.48
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.48
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.45
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.41
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.39
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.38
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.36
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.36
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.36
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.35
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.34
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.34
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.34
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.3
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.24
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.2
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.18
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.17
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.17
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.17
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.14
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.13
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.11
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.04
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.97
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.97
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.96
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.96
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.91
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.85
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.82
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.69
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.65
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.64
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.61
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.61
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.61
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.55
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.52
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.48
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.47
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.39
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.38
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.34
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.2
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.16
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.15
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.14
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.13
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.12
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.92
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.9
3ott_A	758	Two-component system sensor histidine kinase; beta	96.82
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.72
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.68
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.57
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.55
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.43
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.27
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.24
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.08
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.89
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.88
3ott_A	758	Two-component system sensor histidine kinase; beta	95.47
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.17
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.1
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.95
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	91.42
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.31
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	87.5
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	86.95
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	86.48
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	86.34
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	86.31
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	85.31
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	83.82
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	83.65
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	81.52
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	81.1

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-47  Score=307.10  Aligned_cols=272  Identities=17%  Similarity=0.197  Sum_probs=235.7

Q ss_pred             CCceeEEEeeeecCC-CccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184            3 GGGTVTCGSWIKRPE-NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~-~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (301)
                      ...+|++++|+++.. +..++++|+      .|+.+++|+++......      ...+.+|...|.+++|++++..++++
T Consensus        31 H~~~V~~v~~~~~~~~~~~~l~tgs------~D~~v~vW~~~~~~~~~------~~~l~gh~~~v~~~~~~~~~~~l~s~   98 (321)
T 3ow8_A           31 HDDAIWSVAWGTNKKENSETVVTGS------LDDLVKVWKWRDERLDL------QWSLEGHQLGVVSVDISHTLPIAASS   98 (321)
T ss_dssp             SSSCEEEEEEC-------CEEEEEE------TTSCEEEEEEETTEEEE------EEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             CCCcEEEEEEecCCCCCCCEEEEEc------CCCCEEEEECCCCCeee------eeeeccCCCCEEEEEECCCCCEEEEE
Confidence            467899999997632 356788766      77888999987543221      34578999999999999999999999


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      +.|++|++||+.+++....+.       .+...+.+++|+|++++|++++.|+.|++|++++++....+..+...+.+++
T Consensus        99 s~D~~i~lWd~~~~~~~~~~~-------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~  171 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIKSID-------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA  171 (321)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE-------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred             eCCCcEEEEECCCCCEEEEEe-------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence            999999999998876533221       2456788999999999999999999999999999988888888888999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      |+|++++|++++.|+.|++||+++++.+..+..+ ..+|.+++|+|+++.     +++++.|+.|++||+++++....+.
T Consensus       172 ~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spd~~~-----l~s~s~dg~i~iwd~~~~~~~~~~~  245 (321)
T 3ow8_A          172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTFSPDSQL-----LVTASDDGYIKIYDVQHANLAGTLS  245 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEECTTSCE-----EEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEEcCCCCE-----EEEEcCCCeEEEEECCCcceeEEEc
Confidence            9999999999999999999999999998888765 457999999999997     7899999999999999999888899


Q ss_pred             ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .|...|.+++|+|++++|++++.|+.|++||+.+++.+..+ ..| ...|.+++|+|||+
T Consensus       246 ~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~h-~~~v~~v~~s~~g~  303 (321)
T 3ow8_A          246 GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF-FDH-QDQVWGVKYNGNGS  303 (321)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCC-SSCEEEEEECTTSS
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-cCC-CCcEEEEEECCCCC
Confidence            99999999999999999999999999999999999988877 578 89999999999984

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-46  Score=310.60  Aligned_cols=272  Identities=12%  Similarity=0.110  Sum_probs=236.5

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|+|+   ..++++|+      .|+.+++|++....        ....+.+|.+.|.+++|+|++++|++++
T Consensus       107 h~~~V~~~~~~p~---~~~l~s~s------~Dg~i~vwd~~~~~--------~~~~l~~h~~~V~~v~~~~~~~~l~sgs  169 (410)
T 1vyh_C          107 HRSPVTRVIFHPV---FSVMVSAS------EDATIKVWDYETGD--------FERTLKGHTDSVQDISFDHSGKLLASCS  169 (410)
T ss_dssp             CSSCEEEEEECSS---SSEEEEEE------SSSCEEEEETTTCC--------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCcEEEEEEcCC---CCEEEEEe------CCCeEEEEECCCCc--------EEEEEeccCCcEEEEEEcCCCCEEEEEe
Confidence            3578999999987   66888866      67888999986543        1345789999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|++|++||+.+.+...       ....|...|.+++|+|++++|++|+.|+.|++||++++..+..+..|...|.+++|
T Consensus       170 ~D~~i~iwd~~~~~~~~-------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~  242 (410)
T 1vyh_C          170 ADMTIKLWDFQGFECIR-------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP  242 (410)
T ss_dssp             TTSCCCEEETTSSCEEE-------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CCCeEEEEeCCCCceeE-------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence            99999999998765422       22347789999999999999999999999999999999988888889899999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcce---------------EEEEEEeCCcceEE
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF---------------LFCTVQRGDKALLA  227 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~  227 (301)
                      +|++++|++++.|+.|++||+++++....+..+. ..|.+++|+|++.+..               -..+++++.|+.|+
T Consensus       243 ~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~  321 (410)
T 1vyh_C          243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHR-HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  321 (410)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC-ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence            9999999999999999999999999888887654 5799999999742100               00168899999999


Q ss_pred             EEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +||+++++++..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+ .+| ...|++++|+|+++
T Consensus       322 iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~-~~h-~~~v~~l~~~~~~~  393 (410)
T 1vyh_C          322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAH-EHFVTSLDFHKTAP  393 (410)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECC-SSCEEEEEECSSSS
T ss_pred             EEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-cCC-CCcEEEEEEcCCCC
Confidence            9999999999999999999999999999999999999999999999999888776 678 89999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.8e-46  Score=299.41  Aligned_cols=267  Identities=11%  Similarity=0.133  Sum_probs=231.3

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..+|++++|+|+   +.++++|+      .|+.+++|++....        ....+..|..+|.+++|+|++++|++++.
T Consensus        13 ~~~V~~~~fsp~---~~~l~s~~------~dg~v~lWd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~   75 (304)
T 2ynn_A           13 SDRVKGIDFHPT---EPWVLTTL------YSGRVELWNYETQV--------EVRSIQVTETPVRAGKFIARKNWIIVGSD   75 (304)
T ss_dssp             CSCEEEEEECSS---SSEEEEEE------TTSEEEEEETTTTE--------EEEEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEECCC---CCEEEEEc------CCCcEEEEECCCCc--------eeEEeeccCCcEEEEEEeCCCCEEEEECC
Confidence            578999999988   67888766      67888999886432        13456789999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc-eecccccCCccEEEEEe
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDF  162 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~  162 (301)
                      |++|++||+.+++....+       ..|...|.+++|+|++++|++|+.|++|++||++++. ....+..|...|.+++|
T Consensus        76 d~~i~vwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~  148 (304)
T 2ynn_A           76 DFRIRVFNYNTGEKVVDF-------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF  148 (304)
T ss_dssp             TSEEEEEETTTCCEEEEE-------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEE-------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence            999999999887653222       2477899999999999999999999999999998774 44556778889999999


Q ss_pred             cC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEcc--CCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (301)
Q Consensus       163 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  239 (301)
                      +| ++.+|++++.|++|++||++++.....+..++...+..+.|+|  ++.+     +++++.|+.|++||+++++++..
T Consensus       149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~s~s~D~~i~iWd~~~~~~~~~  223 (304)
T 2ynn_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-----MITASDDLTIKIWDYQTKSCVAT  223 (304)
T ss_dssp             CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE-----EEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE-----EEEEcCCCeEEEEeCCCCcccee
Confidence            99 6789999999999999999988877777766666799999987  4555     68899999999999999999999


Q ss_pred             eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +..|...|.+++|+|++++|++++.||.|++||+.+++.+..+ ..| ...+.+++|+|+|+
T Consensus       224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~~-~~~~~~~~~~~~~~  283 (304)
T 2ynn_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL-NVG-LERSWCIATHPTGR  283 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCS-SSSEEEEEECTTCG
T ss_pred             eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec-cCC-CccEEEEEECCCCC
Confidence            9999999999999999999999999999999999999988877 466 78999999999873

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.9e-45  Score=294.33  Aligned_cols=275  Identities=11%  Similarity=0.086  Sum_probs=218.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEee-----eCCCcceeeeCCceeccccccCCcceEEEECCCCCeE
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFS-----FDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF   78 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l   78 (301)
                      ...|.+++|+||   +.+++.++       +.++++|+     ++......  ..........|...|.+++|+|++ .|
T Consensus        30 ~~~v~~~~fs~d---G~~l~~~s-------d~~~r~Wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~d~-~l   96 (344)
T 4gqb_B           30 ERQLEAARYRSD---GALLLGAS-------SLSGRCWAGSLWLFKDPCAAP--NEGFCSAGVQTEAGVADLTWVGER-GI   96 (344)
T ss_dssp             CSEEEEEEECTT---SCEEEEEE-------CCSSSCCCEEEEEESSGGGTT--CGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred             cCCEEEEEECCC---CCEEEEEe-------CCceEEeeceeeeeccccccC--CcceeeeeeccCCCEEEEEEeCCC-eE
Confidence            356999999988   56776543       33345553     22111000  000111223467789999999985 68


Q ss_pred             EEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEE
Q 022184           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL  158 (301)
Q Consensus        79 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~  158 (301)
                      ++++.||+|++||+++++......   .....|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.
T Consensus        97 ~~~s~dg~v~lWd~~~~~~~~~~~---~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B           97 LVASDSGAVELWELDENETLIVSK---FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             EEEETTSEEEEEEECTTSSCEEEE---EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EEEECCCEEEEEeccCCCceeEee---ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence            899999999999998876533221   11224788999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEee-cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184          159 DMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (301)
Q Consensus       159 ~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  236 (301)
                      +++|+|++. +|++++.|++|++||+++++....+.. .+...+.+++|+|++..+    +++++.|+.|++||++++++
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----l~sg~~dg~v~~wd~~~~~~  249 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV----FVFGDENGTVSLVDTKSTSC  249 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE----EEEEETTSEEEEEESCC--C
T ss_pred             EEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc----eEEeccCCcEEEEECCCCcE
Confidence            999999885 789999999999999999998887653 234468999999977652    57889999999999999999


Q ss_pred             eeeeeccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          237 IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +..+..|...|++++|+|++ ++|++|+.|+.|+|||+.++++...  .+| ...|++++|+|+|+
T Consensus       250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~--~~H-~~~V~~v~~sp~~~  312 (344)
T 4gqb_B          250 VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS--QAH-RDFVRDATWSPLNH  312 (344)
T ss_dssp             CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE--CCC-SSCEEEEEECSSST
T ss_pred             EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE--cCC-CCCEEEEEEeCCCC
Confidence            99999999999999999998 6899999999999999999987654  678 89999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.7e-44  Score=291.26  Aligned_cols=270  Identities=15%  Similarity=0.190  Sum_probs=230.0

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|++++|+|+   +.++++|+      .|+.+++|+......        ...+..|...|.+++|+|++++|++++
T Consensus        54 H~~~v~~~~~s~d---~~~l~s~s------~Dg~v~iWd~~~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~s~~  116 (340)
T 1got_B           54 HLAKIYAMHWGTD---SRLLLSAS------QDGKLIIWDSYTTNK--------VHAIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTTEEEEEETTTCCE--------EEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEECCC---CCEEEEEe------CCCcEEEEECCCCCc--------ceEeecCCccEEEEEECCCCCEEEEEe
Confidence            4578999999987   67888766      678889998754331        234677899999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.|++|++.+.+.......   ....|...|.++.|++++. +++++.|+.|++||+++++.+..+..|...|.+++|
T Consensus       117 ~d~~v~iw~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~  192 (340)
T 1got_B          117 LDNICSIYNLKTREGNVRVSR---ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL  192 (340)
T ss_dssp             TTCEEEEEETTTCSBSCEEEE---EEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CCCeEEEEECccCCCcceeEE---EecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence            999999999977543222111   1224778999999999875 889999999999999999988888889999999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      +|++++|++++.|+.|++||+++++....+..|. ..|.+++|+|+++.     +++++.|+.|++||+++++.+..+..
T Consensus       193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~-----l~s~s~d~~v~iwd~~~~~~~~~~~~  266 (340)
T 1got_B          193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHE-SDINAICFFPNGNA-----FATGSDDATCRLFDLRADQELMTYSH  266 (340)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS-SCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc-CCEEEEEEcCCCCE-----EEEEcCCCcEEEEECCCCcEEEEEcc
Confidence            9999999999999999999999999988887654 46999999999997     78999999999999999887655543


Q ss_pred             c--CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          243 L--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       243 ~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .  ...+.+++|+|++++|++|+.|+.|++||+.+++....+ .+| ..+|.+++|+|||+
T Consensus       267 ~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~-~~h-~~~v~~~~~s~dg~  325 (340)
T 1got_B          267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGH-DNRVSCLGVTDDGM  325 (340)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECC-SSCEEEEEECTTSS
T ss_pred             CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe-ecC-CCcEEEEEEcCCCC
Confidence            2  247999999999999999999999999999998887776 678 89999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-44  Score=293.90  Aligned_cols=280  Identities=13%  Similarity=0.136  Sum_probs=220.0

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|+|++|+||   +.++|.|+.....--++.+++|+......    .........+|...|.+++|+|+++ +++++.
T Consensus        42 ~~~V~~v~fSpD---G~~las~s~d~~~~wd~~v~~~~~~~~~~----~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~  113 (357)
T 4g56_B           42 EVQIGAVRYRRD---GALLLAASSLSSRTWGGSIWVFKDPEGAP----NESLCTAGVQTEAGVTDVAWVSEKG-ILVASD  113 (357)
T ss_dssp             CSEEEEEEECSS---SCEEEEEECSSSSSCCEEEEEESSCC-------CGGGCSEEEECSSCEEEEEEETTTE-EEEEET
T ss_pred             cCCEEEEEECCC---CCEEEEEcCCCCccccCeEEEEECCCCCc----ceeEecccCCCCCCEEEEEEcCCCC-EEEEEC
Confidence            567999999998   77888876543222256666665432221    1111223457889999999999985 556788


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      ||+|++||+.+++......   .....|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+
T Consensus       114 dg~v~lWd~~~~~~~~~~~---~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s  190 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNK---FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC  190 (357)
T ss_dssp             TSCEEEC--------CCCC---EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CCEEEEeeccccceeEEEe---eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            9999999998776422211   1122477899999999999999999999999999999999988888899999999999


Q ss_pred             CCCc-EEEEEeCCCcEEEEeCCCCceEEEEee-cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          164 LDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       164 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      |++. ++++++.|+.|++||+++++....+.. .+...+.+++|+|++..+    +++++.|+.|++||+++++.+..+.
T Consensus       191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~----la~g~~d~~i~~wd~~~~~~~~~~~  266 (357)
T 4g56_B          191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT----FACGDETGNVSLVNIKNPDSAQTSA  266 (357)
T ss_dssp             TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE----EEEEESSSCEEEEESSCGGGCEEEC
T ss_pred             cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce----EEEeecccceeEEECCCCcEeEEEe
Confidence            9875 789999999999999999887766543 334569999999987652    5778899999999999999888899


Q ss_pred             ccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc-CCC
Q 022184          242 LLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQR  301 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~  301 (301)
                      .|...|++++|+|++ ++|++++.|+.|+|||+++++.+..+  +| ...|++++|+| |++
T Consensus       267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H-~~~V~~vafsP~d~~  325 (357)
T 4g56_B          267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SH-RDFVTGVAWSPLDHS  325 (357)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CC-SSCEEEEEECSSSTT
T ss_pred             ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CC-CCCEEEEEEeCCCCC
Confidence            999999999999987 68999999999999999999988764  68 89999999998 663

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-43  Score=288.60  Aligned_cols=273  Identities=18%  Similarity=0.204  Sum_probs=229.4

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|+|+   +.++++|+      .|+.+++|+......        ...+..|...|.+++|+|++.+|++++
T Consensus        63 H~~~V~~~~~s~d---~~~l~s~s------~Dg~v~vWd~~~~~~--------~~~~~~~~~~v~~~~~sp~g~~lasg~  125 (354)
T 2pbi_B           63 HGNKVLCMDWCKD---KRRIVSSS------QDGKVIVWDSFTTNK--------EHAVTMPCTWVMACAYAPSGCAIACGG  125 (354)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSEEEEEETTTCCE--------EEEEECSSSCCCEEEECTTSSEEEEES
T ss_pred             CCCeEEEEEECCC---CCEEEEEe------CCCeEEEEECCCCCc--------ceEEecCCCCEEEEEECCCCCEEEEee
Confidence            4678999999987   57888866      778889998654331        234567888999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.+++|++......... ........|...|.+++|+|++..|++++.|++|++||+++++.+..+..|...|.+++|
T Consensus       126 ~d~~i~v~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~  204 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNENMA-AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDL  204 (354)
T ss_dssp             TTSEEEEEECCCCTTCCSG-GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CCCCEEEEEEecccccccc-ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEE
Confidence            9999999998754321111 001112247789999999999999999999999999999999998888889999999999


Q ss_pred             cC--CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          163 SL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       163 ~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      +|  ++++|++++.|+.|++||+++++++..+..|. ..|.+++|+|++..     +++++.|+.|++||+++.+.+..+
T Consensus       205 ~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~-----l~s~s~D~~v~lwd~~~~~~~~~~  278 (354)
T 2pbi_B          205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE-SDVNSVRYYPSGDA-----FASGSDDATCRLYDLRADREVAIY  278 (354)
T ss_dssp             CCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-CCeEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCcEEEEE
Confidence            87  56899999999999999999999988887654 47999999999987     789999999999999988776555


Q ss_pred             ecc--CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          241 RLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       241 ~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..+  ...+.+++|+|++++|++++.|+.|++||+.+++.+..+ .+| ...|++++|+|||+
T Consensus       279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l-~~h-~~~v~~l~~spdg~  339 (354)
T 2pbi_B          279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGH-ENRVSTLRVSPDGT  339 (354)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-CCC-SSCEEEEEECTTSS
T ss_pred             cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE-ECC-CCcEEEEEECCCCC
Confidence            433  346889999999999999999999999999998887766 678 89999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4e-43  Score=281.18  Aligned_cols=268  Identities=16%  Similarity=0.237  Sum_probs=229.9

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|++++|+|+   +.++++|+      .++.+++|+.....        ....+.+|...|.+++|+|++++|++++
T Consensus        22 h~~~v~~~~~s~~---~~~l~s~~------~dg~i~iw~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l~s~~   84 (312)
T 4ery_A           22 HTKAVSSVKFSPN---GEWLASSS------ADKLIKIWGAYDGK--------FEKTISGHKLGISDVAWSSDSNLLVSAS   84 (312)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEETTTCC--------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCcEEEEEECCC---CCEEEEee------CCCeEEEEeCCCcc--------cchhhccCCCceEEEEEcCCCCEEEEEC
Confidence            4578999999987   66788765      67788999875432        1335678999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.|++||+++++....+       ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|
T Consensus        85 ~d~~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  157 (312)
T 4ery_A           85 DDKTLKIWDVSSGKCLKTL-------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF  157 (312)
T ss_dssp             TTSEEEEEETTTCCEEEEE-------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEE-------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence            9999999999877653222       236788999999999999999999999999999999988888888899999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      +|++++|++++.|+.|++||+++++.+..+...+...+..++|+|++++     +++++.|+.|++||+++++.+..+..
T Consensus       158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~d~~i~iwd~~~~~~~~~~~~  232 (312)
T 4ery_A          158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-----ILAATLDNTLKLWDYSKGKCLKTYTG  232 (312)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE-----EEEEETTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE-----EEEEcCCCeEEEEECCCCcEEEEEEe
Confidence            9999999999999999999999999888877666667999999999997     78889999999999999998888877


Q ss_pred             cCCCcEE--EEE-cCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          243 LRKPASV--LSI-SLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       243 ~~~~v~~--~~~-s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |......  ..+ .+++++|++++.||.|++||+.+++.+..+ .+| ...|.+++|+|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h-~~~v~~~~~~p~~~  292 (312)
T 4ery_A          233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGH-TDVVISTACHPTEN  292 (312)
T ss_dssp             SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE-CCC-SSCEEEEEECSSSS
T ss_pred             cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh-hcc-CCcEEEEeecCcCC
Confidence            7654322  234 467899999999999999999999988777 678 89999999999874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.8e-43  Score=290.54  Aligned_cols=275  Identities=17%  Similarity=0.209  Sum_probs=223.9

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ..++|+|++|+|+   +.++++|+      .|+.+++|+.....        ....+..|...|.+++|+|++++|++++
T Consensus        65 H~~~V~~~~~sp~---~~~l~s~s------~D~~v~iWd~~~~~--------~~~~~~~h~~~v~~~~~s~~g~~las~~  127 (380)
T 3iz6_a           65 HSGKVYSLDWTPE---KNWIVSAS------QDGRLIVWNALTSQ--------KTHAIKLHCPWVMECAFAPNGQSVACGG  127 (380)
T ss_dssp             CSSCEEEEEECTT---SSCEEEEE------TTSEEEEEETTTTE--------EEEEEECCCTTCCCCEECTTSSEEEECC
T ss_pred             cccEEEEEEEcCC---CCEEEEEe------CCCeEEEEECCCCc--------cceEEecCCCCEEEEEECCCCCEEEEee
Confidence            4678999999987   66788766      67888999875432        1345678999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCeEEEEeCCCcceeccc-----ccCCcc
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE-----PKAHKS  156 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~-----~~~~~~  156 (301)
                      .|+.+++|++..................|.+.+.++.|+|+ +..|++|+.|++|++||+++++.+..+     ..|...
T Consensus       128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~  207 (380)
T 3iz6_a          128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD  207 (380)
T ss_dssp             SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred             CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence            99999999997643211111111223357788999999996 567999999999999999998876554     456778


Q ss_pred             EEEEEecC-CCcEEEEEeCCCcEEEEeCCC-CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184          157 VLDMDFSL-DSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (301)
Q Consensus       157 i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  234 (301)
                      |.+++|+| ++++|++++.|+.|++||++. ++.+..+..| ...|.+++|+|++..     +++++.|+.|++||++++
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~-----l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH-EGDINSVKFFPDGQR-----FGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC-SSCCCEEEECTTSSE-----EEEECSSSCEEEEETTTT
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc-CCCeEEEEEecCCCe-----EEEEcCCCeEEEEECCCC
Confidence            99999987 888999999999999999984 4666666655 457999999999997     799999999999999999


Q ss_pred             eEeeeeeccC-------CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc---cccccCccEEEEEEccCCC
Q 022184          235 NKIGHKRLLR-------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS---KRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       235 ~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~---~~~~~~~~v~~~~~spdg~  301 (301)
                      +.+..+..+.       ..+++++|+|+|++|++|+.||.|++||+.+++....+   ..+| ...|++++|+|||+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~  357 (380)
T 3iz6_a          282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH-EGRISCLGLSSDGS  357 (380)
T ss_dssp             EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC-CCCCCEEEECSSSS
T ss_pred             cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC-CCceEEEEECCCCC
Confidence            8876654432       24899999999999999999999999999988766543   2568 88999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.9e-44  Score=290.30  Aligned_cols=286  Identities=17%  Similarity=0.233  Sum_probs=219.1

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCcc-ccCCcCceeEeeeCCCcceeee--CCceeccccccCCcceEEEECCCCCeEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSR-ASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~   79 (301)
                      .+.||+|++|+|+   +.+++.|+++. ..|.+|.|++|+++........  .......+.+|.+.|.+++++  ++.++
T Consensus        13 ~g~PV~sv~fs~d---g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~   87 (365)
T 4h5i_A           13 VGYPAYGAKFLNN---DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIIL   87 (365)
T ss_dssp             CSSCEEEEEEEET---TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEE
T ss_pred             CCCCEEEEEEeCC---CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEE
Confidence            4689999999998   67888876543 3578999999999876543211  122344678899999998875  55666


Q ss_pred             EE-----------ecCCcEEEEEEcCCccccccccc--cCCCCCCCCCeeEEEEeeCCCEEEEe--ecCCeEEEEeCCCc
Q 022184           80 CS-----------TTNGGCKLFEVYGGATDINLLAK--KMPPLQDAGPQKCLSFSVDGSRFAAG--GVDGHLRIMHWPSL  144 (301)
Q Consensus        80 ~~-----------~~d~~i~~w~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~v~d~~~~  144 (301)
                      ++           +.|+.+++|++............  ......+...+.+++|||||++++++  +.|++|++||++++
T Consensus        88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~  167 (365)
T 4h5i_A           88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL  167 (365)
T ss_dssp             EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred             EEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence            55           35788999999876543322211  11222344678999999999998654  47899999999999


Q ss_pred             ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE-eecCCCCeeEEEEccCCCcceEEEEEEeCCc
Q 022184          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (301)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  223 (301)
                      +.+..+ .|...|.+++|+|||++|++++. +.+++|+..+++.+... ...+...+.+++|+|+++.     +++++.+
T Consensus       168 ~~~~~~-~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~-----l~~~s~d  240 (365)
T 4h5i_A          168 TEKFEI-ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV-----LIAASLK  240 (365)
T ss_dssp             EEEEEE-ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE-----EEEEEES
T ss_pred             cEEEEe-CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE-----EEEEecC
Confidence            887766 46778999999999999999985 45677777777665443 3345557999999999997     4555444


Q ss_pred             c----eEEEEEccCceE----eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEE
Q 022184          224 A----LLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (301)
Q Consensus       224 ~----~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~  295 (301)
                      +    .+.+||+.....    ...+..|...|++++|+|||++||+|+.|+.|+|||+++++++..+..+| ..+|++++
T Consensus       241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~  319 (365)
T 4h5i_A          241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVT  319 (365)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEE
T ss_pred             CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEE
Confidence            4    688899876653    34566788899999999999999999999999999999999988776889 99999999


Q ss_pred             EccCCC
Q 022184          296 FCPTQR  301 (301)
Q Consensus       296 ~spdg~  301 (301)
                      |+|||+
T Consensus       320 fSpdg~  325 (365)
T 4h5i_A          320 ISPDST  325 (365)
T ss_dssp             ECTTSC
T ss_pred             ECCCCC
Confidence            999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-42  Score=280.13  Aligned_cols=270  Identities=11%  Similarity=0.101  Sum_probs=215.0

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ++|++++|+|+   +.++|+|+      .|+.+++|+.+......     ......+|...|.+++|+|++++|++++.|
T Consensus        17 ~~v~~l~~sp~---g~~las~~------~D~~i~iw~~~~~~~~~-----~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D   82 (345)
T 3fm0_A           17 SRCWFLAWNPA---GTLLASCG------GDRRIRIWGTEGDSWIC-----KSVLSEGHQRTVRKVAWSPCGNYLASASFD   82 (345)
T ss_dssp             SCEEEEEECTT---SSCEEEEE------TTSCEEEEEEETTEEEE-----EEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcEEEEEECCC---CCEEEEEc------CCCeEEEEEcCCCccee-----eeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence            48999999988   67888866      67788999986543111     112246899999999999999999999999


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc---eecccccCCccEEEEE
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAHKSVLDMD  161 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~i~~~~  161 (301)
                      +++++|++........     .....|...|.+++|+|++++|++++.|+.|++||++++.   .+..+..|...|.+++
T Consensus        83 ~~v~iw~~~~~~~~~~-----~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (345)
T 3fm0_A           83 ATTCIWKKNQDDFECV-----TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV  157 (345)
T ss_dssp             SCEEEEEECCC-EEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred             CcEEEEEccCCCeEEE-----EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence            9999999976642111     1112477899999999999999999999999999997653   3445667888999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceE--EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-----
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-----  234 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----  234 (301)
                      |+|++++|++++.|+.|++||+++++..  ..+..| ...|.+++|+|++++     +++++.|+.|++||....     
T Consensus       158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~-----l~s~s~D~~v~iW~~~~~~~~~~  231 (345)
T 3fm0_A          158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH-ESTVWSLAFDPSGQR-----LASCSDDRTVRIWRQYLPGNEQG  231 (345)
T ss_dssp             ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECTTSSE-----EEEEETTSCEEEEEEECTTCTTC
T ss_pred             ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC-CCceEEEEECCCCCE-----EEEEeCCCeEEEeccccCCCCcc
Confidence            9999999999999999999999887543  455544 557999999999997     789999999999996432     


Q ss_pred             ----------eEeeeeec-cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee--------eccccccccCccEEEEE
Q 022184          235 ----------NKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI--------NHWSKRLHLGTSIALVE  295 (301)
Q Consensus       235 ----------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~--------~~~~~~~~~~~~v~~~~  295 (301)
                                +.+..+.. |...|.+++|+|++..|++++.|+.|++|+......        ......+| ...|++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~  310 (345)
T 3fm0_A          232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH-SQDVNCVA  310 (345)
T ss_dssp             CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS-SSCEEEEE
T ss_pred             ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc-cCcEeEeE
Confidence                      22223333 678899999999999999999999999999875421        11222578 88999999


Q ss_pred             EccCC
Q 022184          296 FCPTQ  300 (301)
Q Consensus       296 ~spdg  300 (301)
                      |+|++
T Consensus       311 ~~p~~  315 (345)
T 3fm0_A          311 WNPKE  315 (345)
T ss_dssp             ECSSS
T ss_pred             EeCCC
Confidence            99986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-42  Score=277.84  Aligned_cols=271  Identities=14%  Similarity=0.131  Sum_probs=204.5

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccc-c-ccCCcceEEEECCCCCeEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-D-ESEGDPMTIAVNPSGDDFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~h~~~v~~~~~~~~~~~l~~   80 (301)
                      ...+|++++|+++     ++|+|+      .|+.+++|++.......      ...+ . +|.+.|.+++|+|++++|++
T Consensus        13 h~~~v~~~~~s~~-----~las~~------~D~~i~lw~~~~~~~~~------~~~~~~~~h~~~v~~v~~sp~~~~las   75 (330)
T 2hes_X           13 YKEKIWSFDFSQG-----ILATGS------TDRKIKLVSVKYDDFTL------IDVLDETAHKKAIRSVAWRPHTSLLAA   75 (330)
T ss_dssp             CSSCEEEEEEETT-----EEEEEE------SSSCEEEEECSSSCCEE------EEEECTTCCCSCEEEEEECTTSSEEEE
T ss_pred             CCCceeeeccCCC-----EEEEEc------CCCEEEEEEecCCCeEE------EEEEecCCccCCEEEEEECCCCCEEEE
Confidence            4678999999965     777765      67888999987543222      1122 3 49999999999999999999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc----ceecccccCCcc
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----RIILDEPKAHKS  156 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~  156 (301)
                      ++.|++|++|+++.................|...|.+++|+|++++|++++.|+.|++||++..    +.+..+..|...
T Consensus        76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  155 (330)
T 2hes_X           76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD  155 (330)
T ss_dssp             EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred             EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence            9999999999986432100000000112247789999999999999999999999999999432    345566778889


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceEEEEeecCCCCeeEEEEccC--CCcceEEEEEEeCCcceEEEEEcc
Q 022184          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKD--GTKPFLFCTVQRGDKALLAVYDIS  232 (301)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~d~~  232 (301)
                      |.+++|+|++++|++++.|++|++||++++  +++..+..| ...|.+++|+|+  +..     +++++.|+.|++||++
T Consensus       156 v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~-----l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EGTVWSSDFDKTEGVFR-----LCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCSSSSCE-----EEEEETTSCEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CCcEEEEEecCCCCeeE-----EEEEeCCCeEEEEEec
Confidence            999999999999999999999999999876  556666655 457999999999  444     6889999999999987


Q ss_pred             Cc--------eEeeeeec-cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce--eeccccccccCc-cEEEEEEcc
Q 022184          233 TW--------NKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--INHWSKRLHLGT-SIALVEFCP  298 (301)
Q Consensus       233 ~~--------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~-~v~~~~~sp  298 (301)
                      .+        .....+.. |...|.+++|++++ +|++++.||.|++|+..+++  ........| .. .|.+++|+|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h-~~~~v~~v~~~~  305 (330)
T 2hes_X          230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH-GVYEINVVKWLE  305 (330)
T ss_dssp             EECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT-TTSCEEEEEEC-
T ss_pred             CCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc-ccceEEEEEEec
Confidence            64        23333443 78899999999765 89999999999999998774  233332467 55 899999999

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.2e-42  Score=298.25  Aligned_cols=269  Identities=17%  Similarity=0.199  Sum_probs=226.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|++++|+|+   +.++|+|+      .|+.++||+.......+      ...+.+|.+.|.+++|+|++++|++++
T Consensus        58 h~~~v~~~~~spd---g~~lasg~------~d~~v~lWd~~~~~~~~------~~~~~~~~~~v~~v~fs~dg~~l~~~~  122 (611)
T 1nr0_A           58 HSHQTTVAKTSPS---GYYCASGD------VHGNVRIWDTTQTTHIL------KTTIPVFSGPVKDISWDSESKRIAAVG  122 (611)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSEEEEEESSSTTCCE------EEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred             CCCceEEEEECCC---CcEEEEEe------CCCCEEEeECCCCccee------eEeecccCCceEEEEECCCCCEEEEEE
Confidence            4678999999988   78999877      67888999985433221      335678999999999999999999988


Q ss_pred             cC----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC-EEEEeecCCeEEEEeCCCcceecccccCCccE
Q 022184           83 TN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (301)
Q Consensus        83 ~d----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i  157 (301)
                      .+    +.|++||.  +...       .....|...|.+++|+|++. .|++++.|++|++||.++++....+.+|...|
T Consensus       123 ~~~~~~~~v~~wd~--~~~~-------~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V  193 (611)
T 1nr0_A          123 EGRERFGHVFLFDT--GTSN-------GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV  193 (611)
T ss_dssp             CCSSCSEEEEETTT--CCBC-------BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred             CCCCceeEEEEeeC--CCCc-------ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCce
Confidence            65    36788873  3221       12235778999999999986 59999999999999999988888888899999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee------cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  231 (301)
                      .+++|+|++++|++++.|++|++||+++++.+..+..      .|...|.+++|+|++++     +++++.|++|++||+
T Consensus       194 ~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-----l~s~s~D~~v~lWd~  268 (611)
T 1nr0_A          194 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-----IASASADKTIKIWNV  268 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE-----EEEEETTSEEEEEET
T ss_pred             EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE-----EEEEeCCCeEEEEeC
Confidence            9999999999999999999999999999998887743      45567999999999997     789999999999999


Q ss_pred             cCceEeee-------------------------------------------eeccCCCcEEEEEcCCCCEEEEeeCCCcE
Q 022184          232 STWNKIGH-------------------------------------------KRLLRKPASVLSISLDGKYLAMGSKDGDI  268 (301)
Q Consensus       232 ~~~~~~~~-------------------------------------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i  268 (301)
                      ++++.+..                                           +.+|...|++++|+|+|++|++++.|+.|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v  348 (611)
T 1nr0_A          269 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHI  348 (611)
T ss_dssp             TTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcE
Confidence            87765432                                           34577889999999999999999999999


Q ss_pred             EEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       269 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++||+.+++....+...| ...|.+++|+++++
T Consensus       349 ~~Wd~~~~~~~~~~~~~h-~~~v~~~~~s~~~~  380 (611)
T 1nr0_A          349 NSWDISTGISNRVFPDVH-ATMITGIKTTSKGD  380 (611)
T ss_dssp             EEEETTTCCEEECSSCSC-SSCEEEEEECTTSC
T ss_pred             EEEECCCCceeeecccCC-cceEEEEEECCCCc
Confidence            999999998877665678 89999999998763

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.1e-42  Score=274.60  Aligned_cols=271  Identities=11%  Similarity=0.114  Sum_probs=224.7

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ..++|++++|+|+.  .+++++|+      .|+.+++|++.......   ......+.+|...|.+++|+|++++|++++
T Consensus        16 H~~~V~~l~~~~~~--~~~l~s~s------~D~~v~~W~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A           16 HNGWVTSLATSAGQ--PNLLLSAS------RDKTLISWKLTGDDQKF---GVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             CSSCEEEEEECSSC--TTEEEEEE------TTSEEEEEEEEEETTEE---EEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccceEEEEEccCCC--ccEEEEec------CCccEEEecCCCCCccc---cccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            46889999999652  46888866      77888999986433221   122346789999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|++|++||+.+++....+       ..|...|.+++|+|++++|++++.|+.|++||++. +.+..+..|...|.+++|
T Consensus        85 ~D~~v~~wd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~  156 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRF-------VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRV  156 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEE-------ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEE
T ss_pred             CCCEEEEEECCCCCeeEEE-------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEE
Confidence            9999999999887653222       24778999999999999999999999999999964 455677788899999999


Q ss_pred             cCC------CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184          163 SLD------SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (301)
Q Consensus       163 ~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  236 (301)
                      .|.      +..|++++.|+.|++||+++.+....+..|. ..|.+++|+|++++     +++++.|+.|++||+++++.
T Consensus       157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~sp~g~~-----l~s~~~dg~i~iwd~~~~~~  230 (319)
T 3frx_A          157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGTL-----IASAGKDGEIMLWNLAAKKA  230 (319)
T ss_dssp             CCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC-SCEEEEEECTTSSE-----EEEEETTCEEEEEETTTTEE
T ss_pred             ccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC-CcEEEEEEcCCCCE-----EEEEeCCCeEEEEECCCCcE
Confidence            985      4489999999999999999998888887654 57999999999997     78999999999999999988


Q ss_pred             eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc-------ccccCccEEEEEEccCCC
Q 022184          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-------RLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-------~~~~~~~v~~~~~spdg~  301 (301)
                      +..+.. ...+.+++|+|++.+|++++.+ .+++|++........+.       ..| ...+.+++|+|||+
T Consensus       231 ~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~  299 (319)
T 3frx_A          231 MYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAA-EPHAVSLAWSADGQ  299 (319)
T ss_dssp             EEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGG-CCCEEEEEECTTSS
T ss_pred             EEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCc-CcceeEEEECCCCC
Confidence            877764 4689999999999999988765 59999998876554432       234 56799999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.2e-42  Score=279.65  Aligned_cols=249  Identities=14%  Similarity=0.100  Sum_probs=200.6

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..+|++++|+++   . .+++|+      .++.|++|+++......    .....+.+|.+.|++++|+|+|++|++++.
T Consensus        82 ~~~v~~~~~s~d---~-~l~~~s------~dg~v~lWd~~~~~~~~----~~~~~~~~H~~~V~~v~~spdg~~l~sgs~  147 (344)
T 4gqb_B           82 EAGVADLTWVGE---R-GILVAS------DSGAVELWELDENETLI----VSKFCKYEHDDIVSTVSVLSSGTQAVSGSK  147 (344)
T ss_dssp             SSCEEEEEEETT---T-EEEEEE------TTSEEEEEEECTTSSCE----EEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEEEEEeCC---C-eEEEEE------CCCEEEEEeccCCCcee----EeeccccCCCCCEEEEEECCCCCEEEEEeC
Confidence            357999999977   3 455544      67888999997654322    113345689999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC-CEEEEeecCCeEEEEeCCCcceeccccc--CCccEEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPK--AHKSVLDM  160 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~i~~~  160 (301)
                      |++|++||+++++....+       ..|...|.+++|+|++ .+|++++.|+.|++||+++++....+..  +...+.++
T Consensus       148 d~~i~iwd~~~~~~~~~~-------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  220 (344)
T 4gqb_B          148 DICIKVWDLAQQVVLSSY-------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSL  220 (344)
T ss_dssp             TSCEEEEETTTTEEEEEE-------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEE
T ss_pred             CCeEEEEECCCCcEEEEE-------cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceee
Confidence            999999999887653222       2477899999999987 4789999999999999999887766543  33478999


Q ss_pred             EecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184          161 DFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (301)
Q Consensus       161 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  239 (301)
                      +|+|+ +++|++++.|+.|++||+++++++..+..|. ..|++++|+|++..+    +++++.|++|++||+++++.. .
T Consensus       221 ~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~-~~v~~v~fsp~g~~~----lasgs~D~~i~vwd~~~~~~~-~  294 (344)
T 4gqb_B          221 AWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS-QCVTGLVFSPHSVPF----LASLSEDCSLAVLDSSLSELF-R  294 (344)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS-SCEEEEEECSSSSCC----EEEEETTSCEEEECTTCCEEE-E
T ss_pred             eecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC-CCEEEEEEccCCCeE----EEEEeCCCeEEEEECCCCcEE-E
Confidence            99995 5688999999999999999999999888765 469999999998642    688999999999999998765 5


Q ss_pred             eeccCCCcEEEEEcCCCC-EEEEeeCCCcEEEEeCCCceee
Q 022184          240 KRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                      +.+|...|++++|+|+++ +|++++.|++|++|++.+....
T Consensus       295 ~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          295 SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP  335 (344)
T ss_dssp             ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred             EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence            678999999999999986 5778999999999999876543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6e-42  Score=297.86  Aligned_cols=276  Identities=17%  Similarity=0.257  Sum_probs=218.7

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|++++|+|+.  ...+++|+      .|+.+++|+..+.  .      ....+.+|.+.|.+++|+|+|++|++++
T Consensus       146 h~~~v~~v~f~p~~--~~~l~s~s------~D~~v~lwd~~~~--~------~~~~l~~H~~~V~~v~fspdg~~las~s  209 (611)
T 1nr0_A          146 QARAMNSVDFKPSR--PFRIISGS------DDNTVAIFEGPPF--K------FKSTFGEHTKFVHSVRYNPDGSLFASTG  209 (611)
T ss_dssp             CSSCEEEEEECSSS--SCEEEEEE------TTSCEEEEETTTB--E------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCceEEEECCCC--CeEEEEEe------CCCeEEEEECCCC--e------EeeeeccccCceEEEEECCCCCEEEEEE
Confidence            35689999999772  23566655      6788899986432  1      2345789999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec--------------
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--------------  148 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~--------------  148 (301)
                      .|++|++||+.+++....+.........|.+.|.+++|+|++++|++++.|++|++||+++++.+.              
T Consensus       210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~  289 (611)
T 1nr0_A          210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG  289 (611)
T ss_dssp             TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred             CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence            999999999887765333221112233588999999999999999999999999999998765432              


Q ss_pred             -----------------------------ccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-----
Q 022184          149 -----------------------------DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-----  194 (301)
Q Consensus       149 -----------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----  194 (301)
                                                   .+.+|...|.+++|+|++++|++++.|++|++||+.+++....+..     
T Consensus       290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~  369 (611)
T 1nr0_A          290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM  369 (611)
T ss_dssp             EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred             EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcce
Confidence                                         2235777899999999999999999999999999987654322100     


Q ss_pred             ----------------------------------------------------------------------------cCCC
Q 022184          195 ----------------------------------------------------------------------------NSDE  198 (301)
Q Consensus       195 ----------------------------------------------------------------------------~~~~  198 (301)
                                                                                                  .+..
T Consensus       370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~  449 (611)
T 1nr0_A          370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY  449 (611)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSS
T ss_pred             EEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCC
Confidence                                                                                        0112


Q ss_pred             CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE--eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC-
Q 022184          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK-  275 (301)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~-  275 (301)
                      .+.+++|+|+|+.     +++++.|+.|++||+.+++.  ... ..|...|++++|+|||++|++++.|+.|++|++.+ 
T Consensus       450 ~v~~va~spdg~~-----lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~  523 (611)
T 1nr0_A          450 NSSCVALSNDKQF-----VAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN  523 (611)
T ss_dssp             CEEEEEECTTSCE-----EEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred             CceEEEEeCCCCE-----EEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC
Confidence            3678899999987     78999999999999987653  233 67889999999999999999999999999999987 


Q ss_pred             ceeecc-ccccccCccEEEEEEccCCC
Q 022184          276 MEINHW-SKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       276 ~~~~~~-~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++.... ....| ...|.+++|+|||+
T Consensus       524 ~~~~~~~~~~~H-~~~V~~v~fspdg~  549 (611)
T 1nr0_A          524 FELAHTNSWTFH-TAKVACVSWSPDNV  549 (611)
T ss_dssp             TEESCCCCCCCC-SSCEEEEEECTTSS
T ss_pred             Cceeeeeeeeec-ccceeEEEECCCCC
Confidence            666554 23458 89999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.8e-42  Score=276.21  Aligned_cols=242  Identities=17%  Similarity=0.224  Sum_probs=212.6

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|.+++|+++   ..++++|+      .|+.+++|++....        ....+..|...+.+++|+|++++|++++
T Consensus        79 h~~~v~~~~~~~~---~~~l~s~s------~D~~i~lWd~~~~~--------~~~~~~~~~~~~~~~~~spdg~~l~~g~  141 (321)
T 3ow8_A           79 HQLGVVSVDISHT---LPIAASSS------LDAHIRLWDLENGK--------QIKSIDAGPVDAWTLAFSPDSQYLATGT  141 (321)
T ss_dssp             CSSCEEEEEECSS---SSEEEEEE------TTSEEEEEETTTTE--------EEEEEECCTTCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEEECCC---CCEEEEEe------CCCcEEEEECCCCC--------EEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence            3567999999987   56777755      67888999876432        1234667888999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.|++|+++.++....+.       .+...+.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|
T Consensus       142 ~dg~v~i~~~~~~~~~~~~~-------~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~  214 (321)
T 3ow8_A          142 HVGKVNIFGVESGKKEYSLD-------TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF  214 (321)
T ss_dssp             TTSEEEEEETTTCSEEEEEE-------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEE
T ss_pred             CCCcEEEEEcCCCceeEEec-------CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEE
Confidence            99999999998776532221       24567999999999999999999999999999999988888888899999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      +|++++|++++.|+.|++||+++++....+..|. ..|.+++|+|++.+     +++++.|+.|++||+++++++..+..
T Consensus       215 spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~sp~~~~-----l~s~s~D~~v~iwd~~~~~~~~~~~~  288 (321)
T 3ow8_A          215 SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA-SWVLNVAFCPDDTH-----FVSSSSDKSVKVWDVGTRTCVHTFFD  288 (321)
T ss_dssp             CTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             cCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC-CceEEEEECCCCCE-----EEEEeCCCcEEEEeCCCCEEEEEEcC
Confidence            9999999999999999999999999888887654 46999999999997     78999999999999999999999999


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      |...|.+++|+|++++|++++.|+.|++||..
T Consensus       289 h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          289 HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999999999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.6e-42  Score=272.33  Aligned_cols=232  Identities=12%  Similarity=0.125  Sum_probs=200.7

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      ...+.+|.+.|.+++|+|++++|++++.||+|++||++++.....+       ..|..+|.+++|+|++++|++|+.|+.
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~s~d~~   78 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-------QVTETPVRAGKFIARKNWIIVGSDDFR   78 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-------ECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-------eccCCcEEEEEEeCCCCEEEEECCCCE
Confidence            4468899999999999999999999999999999999877642222       135678999999999999999999999


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccC-CCcceE
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD-GTKPFL  214 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~  214 (301)
                      |++||+++++.+..+..|...|.+++|+|++++|++++.|++|++||++++.........+...|.+++|+|+ +..   
T Consensus        79 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~---  155 (304)
T 2ynn_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---  155 (304)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE---
T ss_pred             EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE---
Confidence            9999999999988899999999999999999999999999999999999885554433345567999999994 555   


Q ss_pred             EEEEEeCCcceEEEEEccCceEeeeee-ccCCCcEEEEEcC--CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccE
Q 022184          215 FCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v  291 (301)
                        +++++.|+.|++||+++......+. .+...+..+.|+|  ++++|++++.|+.|++||+++++.+..+ .+| ...|
T Consensus       156 --l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-~~h-~~~v  231 (304)
T 2ynn_A          156 --FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGH-MSNV  231 (304)
T ss_dssp             --EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-ECC-SSCE
T ss_pred             --EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-CCC-CCCE
Confidence              7899999999999998776654443 4557889999987  7789999999999999999999988877 678 8999


Q ss_pred             EEEEEccCCC
Q 022184          292 ALVEFCPTQR  301 (301)
Q Consensus       292 ~~~~~spdg~  301 (301)
                      .+++|+|+++
T Consensus       232 ~~~~~~p~~~  241 (304)
T 2ynn_A          232 SFAVFHPTLP  241 (304)
T ss_dssp             EEEEECSSSS
T ss_pred             EEEEECCCCC
Confidence            9999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2e-41  Score=281.02  Aligned_cols=231  Identities=17%  Similarity=0.234  Sum_probs=210.6

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      ...+.+|.++|++++|+|++++|++++.|++|++||+.+++....+       ..|...|.+++|+|++++|++|+.|+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-------~~h~~~V~~v~~~~~~~~l~sgs~D~~  173 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-------KGHTDSVQDISFDHSGKLLASCSADMT  173 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-------CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-------eccCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            4567899999999999999999999999999999999887653222       237789999999999999999999999


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      |++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++.++..+..|. ..+.++.|+|++..    
T Consensus       174 i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~~~~g~~----  248 (410)
T 1vyh_C          174 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR-EWVRMVRPNQDGTL----  248 (410)
T ss_dssp             CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTTSSE----
T ss_pred             EEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC-ccEEEEEECCCCCE----
Confidence            9999999999888888999999999999999999999999999999999999998888664 46999999999997    


Q ss_pred             EEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCC--------------------CCEEEEeeCCCcEEEEeCCC
Q 022184          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD--------------------GKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~d~~i~i~~~~~  275 (301)
                       +++++.|+.|++||+++++....+..|...|.+++|+|+                    +.+|++|+.|+.|++||+++
T Consensus       249 -l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          249 -IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             -EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             -EEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence             789999999999999999988888999999999999996                    67899999999999999999


Q ss_pred             ceeeccccccccCccEEEEEEccCCC
Q 022184          276 MEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       276 ~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++.+..+ .+| ...|++++|+|+|+
T Consensus       328 ~~~~~~~-~~h-~~~v~~v~~~~~g~  351 (410)
T 1vyh_C          328 GMCLMTL-VGH-DNWVRGVLFHSGGK  351 (410)
T ss_dssp             TEEEEEE-ECC-SSCEEEEEECSSSS
T ss_pred             CceEEEE-ECC-CCcEEEEEEcCCCC
Confidence            9988877 578 89999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.7e-41  Score=277.42  Aligned_cols=272  Identities=15%  Similarity=0.172  Sum_probs=216.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCc----------eeccccccCCcceEEEEC
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPL----------VTYVFDESEGDPMTIAVN   72 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------~~~~~~~h~~~v~~~~~~   72 (301)
                      ...+|+|++|+|+   +.++|+|.       ++.+++|++............          .......+...|.+++|+
T Consensus        63 h~~~V~~v~fspd---g~~la~g~-------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s  132 (393)
T 1erj_A           63 HTSVVCCVKFSND---GEYLATGC-------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS  132 (393)
T ss_dssp             CSSCCCEEEECTT---SSEEEEEC-------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC
T ss_pred             CCCEEEEEEECCC---CCEEEEEc-------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC
Confidence            4678999999988   67888743       356789887543321100000          000111233459999999


Q ss_pred             CCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (301)
Q Consensus        73 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  152 (301)
                      |++++|++++.|+.|++||+++++....       ...|...|.+++|+|++++|++++.|+.|++||+++++....+ .
T Consensus       133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~-------~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~  204 (393)
T 1erj_A          133 PDGKFLATGAEDRLIRIWDIENRKIVMI-------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-S  204 (393)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-E
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcEEEE-------EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-E
Confidence            9999999999999999999987754222       1247789999999999999999999999999999998876555 3


Q ss_pred             CCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEe------ecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          153 AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       153 ~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      +...+.+++|+| ++++|++++.|+.|++||+++++.+..+.      ..+...|.+++|+|+++.     +++++.|+.
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-----l~s~s~d~~  279 (393)
T 1erj_A          205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-----VVSGSLDRS  279 (393)
T ss_dssp             CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-----EEEEETTSE
T ss_pred             cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE-----EEEEeCCCE
Confidence            567899999999 89999999999999999999998877663      234557999999999997     789999999


Q ss_pred             EEEEEccCce------------EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE
Q 022184          226 LAVYDISTWN------------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (301)
Q Consensus       226 i~~~d~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~  293 (301)
                      |++||+++..            ....+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+ .+| ...|.+
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l-~~h-~~~v~~  357 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGH-RNSVIS  357 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE-ECC-SSCEEE
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-CCC-CCCEEE
Confidence            9999997632            34456778889999999999999999999999999999999988776 678 899999


Q ss_pred             EEEccC
Q 022184          294 VEFCPT  299 (301)
Q Consensus       294 ~~~spd  299 (301)
                      ++|+|+
T Consensus       358 v~~~~~  363 (393)
T 1erj_A          358 VAVANG  363 (393)
T ss_dssp             EEECSS
T ss_pred             EEecCC
Confidence            999873

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.7e-41  Score=273.64  Aligned_cols=243  Identities=17%  Similarity=0.181  Sum_probs=210.4

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|.+++|+|+   +.++++|+      .++.+++|++......    ......+.+|.+.|.++.|++++. +++++.
T Consensus        97 ~~~v~~~~~s~~---~~~l~s~~------~d~~v~iw~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~  162 (340)
T 1got_B           97 SSWVMTCAYAPS---GNYVACGG------LDNICSIYNLKTREGN----VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG  162 (340)
T ss_dssp             SSCEEEEEECTT---SSEEEEEE------TTCEEEEEETTTCSBS----CEEEEEEECCSSCEEEEEEEETTE-EEEEET
T ss_pred             CccEEEEEECCC---CCEEEEEe------CCCeEEEEECccCCCc----ceeEEEecCCCccEEEEEECCCCc-EEEEEC
Confidence            467999999987   67888866      6778899998754321    122445789999999999998775 889999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      |++|++||+++++....+       ..|...|.+++|+|++++|++|+.|+.|++||+++++....+..|...|.+++|+
T Consensus       163 d~~i~~wd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~  235 (340)
T 1got_B          163 DTTCALWDIETGQQTTTF-------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF  235 (340)
T ss_dssp             TSCEEEEETTTTEEEEEE-------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred             CCcEEEEECCCCcEEEEE-------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc
Confidence            999999999887653222       2477899999999999999999999999999999999888888899999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeec-CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      |++++|++++.|+.|++||+++++.+..+... ....+.+++|+|+++.     +++++.|+.|++||+.+++.+..+.+
T Consensus       236 p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~g~~d~~i~vwd~~~~~~~~~~~~  310 (340)
T 1got_B          236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-----LLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE-----EEEECCCCeEEEEEcccCcEeeEeec
Confidence            99999999999999999999998887776532 2236999999999997     78899999999999999999889999


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      |...|.+++|+|++++|++|+.|+.|+|||
T Consensus       311 h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999999999999997

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.4e-40  Score=269.72  Aligned_cols=274  Identities=11%  Similarity=0.133  Sum_probs=211.9

Q ss_pred             CCceeEEEee-----eecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCe
Q 022184            3 GGGTVTCGSW-----IKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD   77 (301)
Q Consensus         3 ~~~~v~~~~w-----~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   77 (301)
                      ...+|++++|     ++  .+..++++|+      .|+.+++|++....... ........+.+|...|.+++|+|++.+
T Consensus        20 H~~~V~~~~~~~s~~~~--~d~~~l~sgs------~D~~v~iWd~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           20 HSDWVTSIVAGFSQKEN--EDSPVLISGS------RDKTVMIWKLYEEEQNG-YFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             CSSCEEEEEECCCSSTT--CCCCEEEEEE------TTSCEEEEEECSSCCSS-BSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             chhhhhheeeEEEeecC--CCCCEEEEEc------CCCEEEEEECCcCCccc-ccccccchhccCCCceEEEEECCCCCE
Confidence            4578999999     43  1267888866      67888999986543110 011223467899999999999999999


Q ss_pred             EEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec--ccccCCc
Q 022184           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--DEPKAHK  155 (301)
Q Consensus        78 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~  155 (301)
                      +++++.|++|++||+++++....+       ..|...|.+++|+|++++|++++.|+.|++||+.......  ....|..
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~-------~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  163 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRF-------VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSD  163 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEE-------ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSS
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEE-------cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCc
Confidence            999999999999999887653222       2477899999999999999999999999999997433221  1225667


Q ss_pred             cEEEEEecCCC----------cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          156 SVLDMDFSLDS----------EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       156 ~i~~~~~~~~~----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      .|.+++|+|++          .+|++++.|+.|++||. ..+....+..| ...|.+++|+|++++     +++++.|+.
T Consensus       164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h-~~~v~~~~~s~~g~~-----l~sgs~dg~  236 (343)
T 2xzm_R          164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH-ESNVNHLSISPNGKY-----IATGGKDKK  236 (343)
T ss_dssp             CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC-SSCEEEEEECTTSSE-----EEEEETTCE
T ss_pred             eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc-cccceEEEECCCCCE-----EEEEcCCCe
Confidence            89999999987          78999999999999994 45556666654 457999999999997     789999999


Q ss_pred             EEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeec--ccc----------ccccCccEEE
Q 022184          226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSK----------RLHLGTSIAL  293 (301)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~--~~~----------~~~~~~~v~~  293 (301)
                      |++||+...........+...|.+++|+|++++++++ .|+.|++|++.+++...  .+.          .+| ...|.+
T Consensus       237 v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~  314 (343)
T 2xzm_R          237 LLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTS  314 (343)
T ss_dssp             EEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEE
T ss_pred             EEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEE
Confidence            9999995443322233355679999999999887755 57889999998765433  221          256 778999


Q ss_pred             EEEccCCC
Q 022184          294 VEFCPTQR  301 (301)
Q Consensus       294 ~~~spdg~  301 (301)
                      ++|+|+|+
T Consensus       315 ~~~sp~g~  322 (343)
T 2xzm_R          315 LAWNALGK  322 (343)
T ss_dssp             EEECSSSC
T ss_pred             EEECCCCC
Confidence            99999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.3e-40  Score=269.48  Aligned_cols=246  Identities=15%  Similarity=0.165  Sum_probs=210.4

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|.+++|+|+   +.++++|+      .++.+++|.+.......  .......+.+|.+.|.+++|+|+++.|++++.
T Consensus       106 ~~~v~~~~~sp~---g~~lasg~------~d~~i~v~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~  174 (354)
T 2pbi_B          106 CTWVMACAYAPS---GCAIACGG------LDNKCSVYPLTFDKNEN--MAAKKKSVAMHTNYLSACSFTNSDMQILTASG  174 (354)
T ss_dssp             SSCCCEEEECTT---SSEEEEES------TTSEEEEEECCCCTTCC--SGGGCEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCEEEEEECCC---CCEEEEee------CCCCEEEEEEecccccc--ccccceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence            456889999988   67888876      67788999886543211  11223456789999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      |++|++||+++++....+       ..|...|.+++|+|  ++++|++|+.||.|++||+++++.+..+..|...|.+++
T Consensus       175 D~~v~lwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~  247 (354)
T 2pbi_B          175 DGTCALWDVESGQLLQSF-------HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR  247 (354)
T ss_dssp             TSEEEEEETTTCCEEEEE-------ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             CCcEEEEeCCCCeEEEEE-------cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEE
Confidence            999999999887653222       23678899999988  578999999999999999999998888888999999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      |+|++++|++++.|++|++||++.++.+..+..+. ...+.+++|+|++..     +++++.|+.|++||+.+++.+..+
T Consensus       248 ~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-----l~~g~~d~~i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          248 YYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL-----LFAGYNDYTINVWDVLKGSRVSIL  322 (354)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTCSEEEEE
T ss_pred             EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE-----EEEEECCCcEEEEECCCCceEEEE
Confidence            99999999999999999999999988777665332 235889999999997     788999999999999999988888


Q ss_pred             eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      ..|...|++++|+|++++|++|+.|+.|++|+
T Consensus       323 ~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          323 FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.2e-40  Score=286.57  Aligned_cols=261  Identities=16%  Similarity=0.227  Sum_probs=221.2

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|++++|+|+   +.++++++      .++.+++|+.+...         ...+.+|...|.+++|+|++++|++++
T Consensus       302 h~~~v~~~~~~~~---~~~l~t~~------~d~~i~~w~~~~~~---------~~~~~~~~~~v~~~~~s~~g~~l~~~~  363 (577)
T 2ymu_A          302 HSSSVWGVAFSPD---GQTIASAS------DDKTVKLWNRNGQH---------LQTLTGHSSSVWGVAFSPDGQTIASAS  363 (577)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEETTSCE---------EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCeEEEEECCC---CCEEEEEe------CCCeEEEEeCCCCe---------eEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence            3578999999987   56777755      56778999865332         234678999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.|++|+... +....       ...|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|++++|
T Consensus       364 ~dg~v~~~~~~~-~~~~~-------~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~  434 (577)
T 2ymu_A          364 DDKTVKLWNRNG-QLLQT-------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF  434 (577)
T ss_dssp             TTSEEEEEETTC-CEEEE-------EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred             CCCEEEEEcCCC-CEEEE-------ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence            999999999543 22111       1236788999999999999999999999999995 56667778888899999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      +|++++|++++.|+.|++||. +++.+..+..+ ...+.+++|+|+++.     +++++.|+.|++||. +++.+..+..
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~-~~~v~~~~~spd~~~-----las~~~d~~i~iw~~-~~~~~~~~~~  506 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVRGVAFSPDGQT-----IASASDDKTVKLWNR-NGQLLQTLTG  506 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEET-TSCEEEEEECC-SSCEEEEEECTTSCE-----EEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred             CCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC-CCCEEEEEEcCCCCE-----EEEEeCCCEEEEEcC-CCCEEEEEeC
Confidence            999999999999999999996 56667777655 457999999999997     788999999999995 5677888999


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |...|++++|+|++++|++++.|+.|++||. +++.+..+ .+| ...|++++|+|||+
T Consensus       507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~-~~h-~~~v~~~~fs~dg~  562 (577)
T 2ymu_A          507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGH-SSSVWGVAFSPDGQ  562 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-ECC-SSCEEEEEECTTSS
T ss_pred             CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE-cCC-CCCEEEEEEcCCCC
Confidence            9999999999999999999999999999996 56666665 689 99999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.7e-39  Score=262.46  Aligned_cols=270  Identities=13%  Similarity=0.119  Sum_probs=225.9

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|++++|+|+   +.++++++       ++.+++|+++.....   .........+|...|.+++|+|++++|++++
T Consensus        50 h~~~v~~~~~~~~---~~~l~~~~-------dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  116 (337)
T 1gxr_A           50 HGEVVCAVTISNP---TRHVYTGG-------KGCVKVWDISHPGNK---SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             CSSCCCEEEECSS---SSEEEEEC-------BSEEEEEETTSTTCC---SCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEEecC---CcEEEEcC-------CCeEEEEECCCCCce---eeeecccccCCCCcEEEEEEcCCCCEEEEEc
Confidence            4678999999987   56777643       567899998764421   1112222347899999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.|++||+.+++.....     ....|...+.+++|+|++++|++++.|+.|++||+++++....+..|...+.+++|
T Consensus       117 ~d~~i~~~d~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~  191 (337)
T 1gxr_A          117 EASTLSIWDLAAPTPRIKA-----ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             SSSEEEEEECCCC--EEEE-----EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CCCcEEEEECCCCCcceee-----ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEE
Confidence            9999999999876532111     11236678999999999999999999999999999999888888888899999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      +|++++|++++.|+.|++||+++++.+..+.  +...+.+++|+|+++.     +++++.++.|++||+++.+.. .+..
T Consensus       192 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~-----l~~~~~~~~i~~~~~~~~~~~-~~~~  263 (337)
T 1gxr_A          192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-----LAVGMESSNVEVLHVNKPDKY-QLHL  263 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTSSCEE-EECC
T ss_pred             CCCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCE-----EEEEcCCCcEEEEECCCCCeE-EEcC
Confidence            9999999999999999999999998887775  3456999999999997     678889999999999987764 5677


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |...+.+++|+|++++|++++.||.|++||+.+++.+..  ..| ...|.+++|+|||+
T Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~--~~~-~~~v~~~~~s~~~~  319 (337)
T 1gxr_A          264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--SKE-SSSVLSCDISVDDK  319 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EEC-SSCEEEEEECTTSC
T ss_pred             CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE--ecC-CCcEEEEEECCCCC
Confidence            889999999999999999999999999999999887754  346 78999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-42  Score=289.30  Aligned_cols=287  Identities=13%  Similarity=0.137  Sum_probs=213.7

Q ss_pred             CCceeEEEeeeecCCC------ccEEEecCCcc-------------ccCCcCceeEeeeCCCcceeeeCCceeccccccC
Q 022184            3 GGGTVTCGSWIKRPEN------VNLVVLGKSSR-------------ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE   63 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~------~~~~~~g~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~   63 (301)
                      .+++|+|++|+|++..      ..++|+|....             ..+.|+.++||+++......    .....+.+|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~----~~~~~l~~~~  207 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC----VKVQTIVHSF  207 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE----EEEEEEEECC
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc----eEEEEEEecC
Confidence            4689999999998622      27888876431             13578899999987644211    1123456788


Q ss_pred             CcceEEEECCC------CCeEEEEecCCcEEEEEEcCCccccc----cccccCCCCCCCCCeeEEEEeeCCCEEEEeecC
Q 022184           64 GDPMTIAVNPS------GDDFVCSTTNGGCKLFEVYGGATDIN----LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (301)
Q Consensus        64 ~~v~~~~~~~~------~~~l~~~~~d~~i~~w~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (301)
                      +.|.+++|+|+      +.+||+++.||+|++||+..+.....    ..........|...|.+++|+|++ .|++|+.|
T Consensus       208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D  286 (524)
T 2j04_B          208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN  286 (524)
T ss_dssp             CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT
T ss_pred             CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC
Confidence            99999999996      57999999999999999986643210    000000112467899999999864 89999999


Q ss_pred             CeEEEEeCCCcce-ecccccCCccEEEE--EecCCC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCC-CCeeEEEEccC
Q 022184          134 GHLRIMHWPSLRI-ILDEPKAHKSVLDM--DFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKD  208 (301)
Q Consensus       134 g~i~v~d~~~~~~-~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~  208 (301)
                      |+|++||+++++. ...+..|...|.++  +|+|++ .+|++++.|++|+|||++++++...+..+.. ..+.+++|+|+
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~  366 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ  366 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT
T ss_pred             CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC
Confidence            9999999987643 34467888999999  578887 8999999999999999999887766665543 24789999999


Q ss_pred             CCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccc---c
Q 022184          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR---L  285 (301)
Q Consensus       209 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---~  285 (301)
                      +..     +++++.|+.|++||++++..+..+.+|...|++++|+|++++|++|+.|++|++||+... .+.....   .
T Consensus       367 ~~~-----l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~  440 (524)
T 2j04_B          367 IYS-----YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSAT  440 (524)
T ss_dssp             TTE-----EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------
T ss_pred             cCe-----EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccc
Confidence            986     688889999999999998887778889999999999999999999999999999998653 2111100   0


Q ss_pred             ccCccEEEEEEccCC
Q 022184          286 HLGTSIALVEFCPTQ  300 (301)
Q Consensus       286 ~~~~~v~~~~~spdg  300 (301)
                      +....+.+++|+|+|
T Consensus       441 ~~~~~v~~v~~sp~g  455 (524)
T 2j04_B          441 QKSLRLWKWDYSIKD  455 (524)
T ss_dssp             CCCCEEEECBCCSSS
T ss_pred             eeeeEEEEeccCCCC
Confidence            102245677777766

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.6e-40  Score=264.68  Aligned_cols=239  Identities=12%  Similarity=0.176  Sum_probs=200.7

Q ss_pred             eccccccCCcceEEEECCCC-CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           56 TYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ...+.+|.+.|.+++|+|++ ++|++++.|++|++|++...........  .....|...|.+++|+|++++|++++.|+
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--RSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--EEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--eEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            45688999999999999965 7999999999999999975432111110  11224778999999999999999999999


Q ss_pred             eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc-e
Q 022184          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP-F  213 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~  213 (301)
                      +|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||++ ++.+..+..+ ...+.++.|+|..... -
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h-~~~v~~~~~~~~~~~~~~  165 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGH-NDWVSQVRVVPNEKADDD  165 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCC-SSCEEEEEECCC------
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEecc-CCcEEEEEEccCCCCCCC
Confidence            99999999999988898999999999999999999999999999999996 4556666655 4579999999964310 0


Q ss_pred             EEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE
Q 022184          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (301)
Q Consensus       214 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~  293 (301)
                      -..+++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.  + ...|.+
T Consensus       166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~-~~~v~~  242 (319)
T 3frx_A          166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--A-QDEVFS  242 (319)
T ss_dssp             CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--C-CSCEEE
T ss_pred             ccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--C-CCcEEE
Confidence            0016889999999999999999888889999999999999999999999999999999999999887763  3 468999


Q ss_pred             EEEccCCC
Q 022184          294 VEFCPTQR  301 (301)
Q Consensus       294 ~~~spdg~  301 (301)
                      ++|+|||+
T Consensus       243 ~~~sp~~~  250 (319)
T 3frx_A          243 LAFSPNRY  250 (319)
T ss_dssp             EEECSSSS
T ss_pred             EEEcCCCC
Confidence            99999984

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.7e-40  Score=267.44  Aligned_cols=256  Identities=13%  Similarity=0.106  Sum_probs=202.1

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|++++|+|+   ++++++|+      .|+.+++|+.+......      ...+.+|.+.|.+++|+|++++|++++
T Consensus        60 h~~~v~~~~~sp~---g~~l~s~s------~D~~v~iw~~~~~~~~~------~~~~~~h~~~v~~v~~sp~~~~l~s~s  124 (345)
T 3fm0_A           60 HQRTVRKVAWSPC---GNYLASAS------FDATTCIWKKNQDDFEC------VTTLEGHENEVKSVAWAPSGNLLATCS  124 (345)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEEECCC-EEE------EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCcEEEEEECCC---CCEEEEEE------CCCcEEEEEccCCCeEE------EEEccCCCCCceEEEEeCCCCEEEEEE
Confidence            3568999999987   67888866      67788999987543222      345789999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc--eecccccCCccEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVLDM  160 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~i~~~  160 (301)
                      .|++|++||+..........    ....|...|.+++|+|++++|++++.|+.|++||.++++  ....+.+|...|.++
T Consensus       125 ~D~~v~iwd~~~~~~~~~~~----~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l  200 (345)
T 3fm0_A          125 RDKSVWVWEVDEEDEYECVS----VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL  200 (345)
T ss_dssp             TTSCEEEEEECTTSCEEEEE----EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred             CCCeEEEEECCCCCCeEEEE----EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEE
Confidence            99999999998654311111    112467889999999999999999999999999998765  345677888999999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCC---------------ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDG---------------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      +|+|++++|++++.|++|++||....               +++..+...+...|.+++|+|++..     +++++.|+.
T Consensus       201 ~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-----l~s~~~d~~  275 (345)
T 3fm0_A          201 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA-----LATACGDDA  275 (345)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC-----EEEEETTSC
T ss_pred             EECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE-----EEEEeCCCe
Confidence            99999999999999999999996421               2344455545667999999999997     788999999


Q ss_pred             EEEEEccCceE---------eeeeeccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          226 LAVYDISTWNK---------IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       226 i~~~d~~~~~~---------~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      |++|+......         ......|...|++++|+|++ .+|++++.||.|++|++.+.+.+...
T Consensus       276 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          276 IRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             EEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            99999875421         12234678899999999987 59999999999999999988765543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-40  Score=271.11  Aligned_cols=247  Identities=12%  Similarity=0.109  Sum_probs=196.5

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|++++|+|+   ..+++. +      .++.|++|++.......    .......+|.+.|.+++|+|++++|++++.
T Consensus        94 ~~~V~~~~~s~d---~~~l~~-s------~dg~v~lWd~~~~~~~~----~~~~~~~~h~~~V~~v~~spdg~~l~sgs~  159 (357)
T 4g56_B           94 EAGVTDVAWVSE---KGILVA-S------DSGAVELWEILEKESLL----VNKFAKYEHDDIVKTLSVFSDGTQAVSGGK  159 (357)
T ss_dssp             SSCEEEEEEETT---TEEEEE-E------TTSCEEEC--------C----CCCEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCEEEEEEcCC---CCEEEE-E------CCCEEEEeeccccceeE----EEeeccCCCCCCEEEEEECCCCCEEEEEeC
Confidence            456999999987   445443 2      56788999876543211    112345689999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC-EEEEeecCCeEEEEeCCCcceecccc--cCCccEEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEP--KAHKSVLDM  160 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~  160 (301)
                      |+.|++||+++++....+       ..|...|.+++|+|++. ++++++.|+.|++||+++++....+.  .+...+.++
T Consensus       160 dg~v~iwd~~~~~~~~~~-------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v  232 (357)
T 4g56_B          160 DFSVKVWDLSQKAVLKSY-------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSV  232 (357)
T ss_dssp             TSCEEEEETTTTEEEEEE-------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEE
T ss_pred             CCeEEEEECCCCcEEEEE-------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccch
Confidence            999999999887653222       23678999999999874 78999999999999999887765443  345679999


Q ss_pred             EecCCC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184          161 DFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (301)
Q Consensus       161 ~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  239 (301)
                      +|+|++ .+|++++.|+.|++||+++++.+..+..+. ..|.+++|+|++..+    +++++.|++|++||+++++.+..
T Consensus       233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~----lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          233 TWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS-QNITGLAYSYHSSPF----LASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             EECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS-SCEEEEEECSSSSCC----EEEEETTSCEEEECTTSCEEEEE
T ss_pred             hhhhcccceEEEeecccceeEEECCCCcEeEEEeccc-eeEEEEEEcCCCCCE----EEEEeCCCEEEEEECCCCcEeEE
Confidence            999975 588999999999999999999988887654 469999999998642    67889999999999999887754


Q ss_pred             eeccCCCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCce
Q 022184          240 KRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       240 ~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                       ..|...|++++|+| ++++|++++.|++|++|++.+..
T Consensus       308 -~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          308 -LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             -CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             -CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence             47899999999999 79999999999999999997643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-39  Score=263.81  Aligned_cols=242  Identities=14%  Similarity=0.144  Sum_probs=193.7

Q ss_pred             eeccccccCCcceEEEE-----CC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEE
Q 022184           55 VTYVFDESEGDPMTIAV-----NP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA  128 (301)
Q Consensus        55 ~~~~~~~h~~~v~~~~~-----~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  128 (301)
                      ....+.+|.+.|++++|     ++ ++++|++++.|++|++||+...+..............|...|.+++|+|++.+++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            34568899999999999     76 8999999999999999999765432111111112234778999999999999999


Q ss_pred             EeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--ecCCCCeeEEEEc
Q 022184          129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFS  206 (301)
Q Consensus       129 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~  206 (301)
                      +++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+... ......  ..+...+.+++|+
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~  171 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYS  171 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEEC
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeec
Confidence            9999999999999999988888899999999999999999999999999999999843 333322  1345579999999


Q ss_pred             cCCCcce-----EEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce-eec
Q 022184          207 KDGTKPF-----LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INH  280 (301)
Q Consensus       207 ~~~~~~~-----~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~-~~~  280 (301)
                      |++....     --.+++++.|+.|++||. ..+....+..|...|.+++|+|+|++|++++.|+.|++||+.... ...
T Consensus       172 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~  250 (343)
T 2xzm_R          172 PIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR  250 (343)
T ss_dssp             CCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred             cccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence            9873100     001688999999999994 456667788899999999999999999999999999999995433 333


Q ss_pred             cccccccCccEEEEEEccCCC
Q 022184          281 WSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       281 ~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+  .+ ...|.+++|+|+++
T Consensus       251 ~~--~~-~~~v~~v~~sp~~~  268 (343)
T 2xzm_R          251 EF--DA-GSTINQIAFNPKLQ  268 (343)
T ss_dssp             EE--EC-SSCEEEEEECSSSC
T ss_pred             ee--cC-CCcEEEEEECCCCC
Confidence            32  23 56799999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-39  Score=258.37  Aligned_cols=246  Identities=12%  Similarity=0.109  Sum_probs=197.5

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC--CCeEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~   80 (301)
                      ...+|++++|+|+   +.++|+|+      .|+.+++|+++.....      ....+.+|.++|.+++|+|+  +++|++
T Consensus         8 h~~~V~~~~~s~~---g~~las~s------~D~~v~iw~~~~~~~~------~~~~l~gH~~~V~~v~~s~~~~g~~l~s   72 (297)
T 2pm7_B            8 HNEMIHDAVMDYY---GKRMATCS------SDKTIKIFEVEGETHK------LIDTLTGHEGPVWRVDWAHPKFGTILAS   72 (297)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEEBCSSCBC------CCEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CcCceEEEEECCC---CCEEEEEe------CCCEEEEEecCCCCcE------EEEEEccccCCeEEEEecCCCcCCEEEE
Confidence            4678999999988   67888866      6788899998653321      23457899999999999864  889999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC--CCEEEEeecCCeEEEEeCCCcce--ecccccCCcc
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKS  156 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~  156 (301)
                      ++.|++|++||+++++.....     ....|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+..|...
T Consensus        73 ~s~D~~v~iWd~~~~~~~~~~-----~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~  147 (297)
T 2pm7_B           73 CSYDGKVMIWKEENGRWSQIA-----VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (297)
T ss_dssp             EETTTEEEEEEBSSSCBCCCE-----EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC
T ss_pred             EcCCCEEEEEEcCCCceEEEE-----EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCc
Confidence            999999999999876421110     11236788999999997  89999999999999999987632  2345677889


Q ss_pred             EEEEEecCC-------------CcEEEEEeCCCcEEEEeCCCCc----eEEEEeecCCCCeeEEEEccCC---CcceEEE
Q 022184          157 VLDMDFSLD-------------SEFLATTSTDGSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDG---TKPFLFC  216 (301)
Q Consensus       157 i~~~~~~~~-------------~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~  216 (301)
                      |.+++|+|+             +++|++++.|++|++||+++++    ....+..| ...|.+++|+|++   .+     
T Consensus       148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~v~~sp~~~~~~~-----  221 (297)
T 2pm7_B          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSY-----  221 (297)
T ss_dssp             EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEE-----
T ss_pred             cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-CCceEEEEECCCCCCceE-----
Confidence            999999997             5799999999999999998766    44455544 5579999999996   44     


Q ss_pred             EEEeCCcceEEEEEccCce---Eeeee--eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          217 TVQRGDKALLAVYDISTWN---KIGHK--RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       217 ~~~~~~~~~i~~~d~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      +++++.|+.|++||+++..   ....+  ..+...+.+++|+|++++|++++.|+.|++|+..
T Consensus       222 las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          222 MASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            6889999999999997642   11122  4567889999999999999999999999999986

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.6e-39  Score=268.61  Aligned_cols=276  Identities=14%  Similarity=0.102  Sum_probs=224.5

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC----C---
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----G---   75 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~---   75 (301)
                      ...+|+|++|+|     .++++|+      .++.+++|+++......  .......+.+|...|.+++|+|+    +   
T Consensus        15 h~~~i~~~~~~~-----~~l~s~~------~dg~i~iw~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~   81 (397)
T 1sq9_A           15 HDADIFSVSACN-----SFTVSCS------GDGYLKVWDNKLLDNEN--PKDKSYSHFVHKSGLHHVDVLQAIERDAFEL   81 (397)
T ss_dssp             SSSCEEEEEECS-----SEEEEEE------TTSEEEEEESBCCTTCC--GGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             hhcCeEEEEecC-----CeEEEEc------CCCEEEEEECCCccccc--CCCcceEEecCCCcEEEEEEecccccCCccc
Confidence            467999999986     3777765      67788999987654211  11223456789999999999999    9   


Q ss_pred             CeEEEEecCCcEEEEEEcCCccccccccccCCCCCC-----CCCeeEEEEe----eCCCE-EEEeecCCeEEEEeCCC--
Q 022184           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD-----AGPQKCLSFS----VDGSR-FAAGGVDGHLRIMHWPS--  143 (301)
Q Consensus        76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s----~~~~~-l~~~~~dg~i~v~d~~~--  143 (301)
                      ++|++++.|+.|++|++.+++...........  .|     ...|.+++|+    |++++ |++++.||.|++||+++  
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  159 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLD--LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA  159 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEEC--CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeec--ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence            99999999999999999887642111111111  23     4889999999    99999 99999999999999988  


Q ss_pred             ----cceec-----cc-------ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee---cC--CCCeeE
Q 022184          144 ----LRIIL-----DE-------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NS--DEKIEL  202 (301)
Q Consensus       144 ----~~~~~-----~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~--~~~v~~  202 (301)
                          ++.+.     .+       ..+...|.+++|+|++ +|++++.|+.|++||+++++.+..+..   +.  ...+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence                66655     55       3366789999999999 999999999999999999998888876   40  457999


Q ss_pred             EEEccCCCcceEEEEEEeCCc---ceEEEEEccCceEeeeeec-------------cCCCcEEEEEcCCCCEEEEeeCCC
Q 022184          203 CRFSKDGTKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRL-------------LRKPASVLSISLDGKYLAMGSKDG  266 (301)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~d~  266 (301)
                      ++|+|+++.     +++++.|   +.|++||+++++.+..+..             |...|.+++|+|++++|++++.|+
T Consensus       239 i~~~~~~~~-----l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  313 (397)
T 1sq9_A          239 VKFSPQGSL-----LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  313 (397)
T ss_dssp             EEECSSTTE-----EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             EEECCCCCE-----EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence            999999997     6788888   9999999999998888888             899999999999999999999999


Q ss_pred             cEEEEeCCCceeecccc------cc--------------ccCccEEEEEEccCC
Q 022184          267 DICVVDVKKMEINHWSK------RL--------------HLGTSIALVEFCPTQ  300 (301)
Q Consensus       267 ~i~i~~~~~~~~~~~~~------~~--------------~~~~~v~~~~~spdg  300 (301)
                      .|++||+.+++.+..+.      ..              | ..+|++++|+|+|
T Consensus       314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~v~~~~~~~~g  366 (397)
T 1sq9_A          314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA-EPGVFDVKFLKKG  366 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS-SCCEEEEEEECTT
T ss_pred             eEEEEEcCCCceeEEEecccCcccchhhhhcccccccccc-CCceeEEEecccc
Confidence            99999999998877764      21              3 6789999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-39  Score=262.77  Aligned_cols=254  Identities=15%  Similarity=0.168  Sum_probs=190.2

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|++++|+|+   +.++++|+      .|+.+++|+........ ........+.+|.+.|.+++|+|++++|++++
T Consensus        57 h~~~v~~v~~sp~---~~~las~s------~D~~v~iw~~~~~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s  126 (330)
T 2hes_X           57 HKKAIRSVAWRPH---TSLLAAGS------FDSTVSIWAKEESADRT-FEMDLLAIIEGHENEVKGVAWSNDGYYLATCS  126 (330)
T ss_dssp             CCSCEEEEEECTT---SSEEEEEE------TTSCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSCEEEEEE
T ss_pred             ccCCEEEEEECCC---CCEEEEEe------CCCcEEEEEcccCcCcc-ccceeEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence            4578999999987   57888866      67888999885322110 01223456789999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc--ceecccccCCccEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILDEPKAHKSVLDM  160 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~i~~~  160 (301)
                      .|++|++||+..........   .....|...|.+++|+|++++|++++.|+.|++||..++  +.+..+.+|...|.++
T Consensus       127 ~D~~v~iwd~~~~~~~~~~~---~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~  203 (330)
T 2hes_X          127 RDKSVWIWETDESGEEYECI---SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS  203 (330)
T ss_dssp             TTSCEEEEECCTTCCCCEEE---EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEeccCCCCCeEEE---EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEE
Confidence            99999999995432111111   011247789999999999999999999999999998765  5666778888999999


Q ss_pred             EecCC--CcEEEEEeCCCcEEEEeCCCC--------ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          161 DFSLD--SEFLATTSTDGSARIWKTEDG--------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       161 ~~~~~--~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                      +|+|+  +.+|++++.|++|++||++.+        .....+...+...|.+++|++++.      +++++.|+.|++||
T Consensus       204 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~------l~s~~~dg~v~iw~  277 (330)
T 2hes_X          204 DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL------IASVGADGVLAVYE  277 (330)
T ss_dssp             EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSC------EEEEETTSCEEEEE
T ss_pred             EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCE------EEEEeCCCEEEEEE
Confidence            99998  678999999999999998764        233344443566799999997763      68889999999999


Q ss_pred             ccCce--Eee-eeeccCC-CcEEEEEcC--CCCEEEEeeCCCcEEEEeCCC
Q 022184          231 ISTWN--KIG-HKRLLRK-PASVLSISL--DGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       231 ~~~~~--~~~-~~~~~~~-~v~~~~~s~--~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      ..+++  ... ....|.. .|.+++|+|  ++++|++++.||.|++|++++
T Consensus       278 ~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          278 EVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            98764  222 2345666 899999999  789999999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.3e-40  Score=274.09  Aligned_cols=262  Identities=13%  Similarity=0.124  Sum_probs=202.7

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceee---eCCceeccccccC------------Ccce
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY---TSPLVTYVFDESE------------GDPM   67 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~h~------------~~v~   67 (301)
                      ...+|+|++|+|+   +.++|+|+      .++.+++|++........   ........+.+|.            +.|.
T Consensus        27 ~~~~V~~v~~s~~---g~~la~g~------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~   97 (447)
T 3dw8_B           27 EADIISTVEFNHS---GELLATGD------KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN   97 (447)
T ss_dssp             GGGSEEEEEECSS---SSEEEEEE------TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC
T ss_pred             ccCcEEEEEECCC---CCEEEEEc------CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE
Confidence            4578999999987   67888876      677889999875442100   0111244577898            8899


Q ss_pred             EEEECCCC--CeEEEEecCCcEEEEEEcCCcccccccc---------------------------------ccCCCCCCC
Q 022184           68 TIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLA---------------------------------KKMPPLQDA  112 (301)
Q Consensus        68 ~~~~~~~~--~~l~~~~~d~~i~~w~~~~~~~~~~~~~---------------------------------~~~~~~~~~  112 (301)
                      +++|+|++  .+|++++.|+.|++|++...........                                 .......|.
T Consensus        98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  177 (447)
T 3dw8_B           98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT  177 (447)
T ss_dssp             EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred             EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence            99999998  7899999999999999976443110000                                 000023477


Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc-eec-------ccccCCccEEEEEecCCC-cEEEEEeCCCcEEEEeC
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IIL-------DEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKT  183 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~  183 (301)
                      ..|.+++|+|++++|++| .|+.|++||+++.. ...       .+..|...|.+++|+|++ ++|++++.|+.|++||+
T Consensus       178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence            899999999999999998 79999999998433 332       355778899999999998 89999999999999999


Q ss_pred             CCCce----EEEEeecCC-----------CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC-ceEeeeeeccCCC-
Q 022184          184 EDGVA----WTFLTRNSD-----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKP-  246 (301)
Q Consensus       184 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~-  246 (301)
                      ++++.    ...+..+..           ..|.+++|+|++++     +++++. +.|++||+++ ++++..+..|... 
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  330 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-----MMTRDY-LSVKVWDLNMENRPVETYQVHEYLR  330 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-----EEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-----EEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence            99886    666765543           26999999999997     567777 9999999997 7777777766431 


Q ss_pred             --------------cEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeec
Q 022184          247 --------------ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (301)
Q Consensus       247 --------------v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~  280 (301)
                                    +..++|+|++++|++++.||.|++||+.+++.+.
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence                          2348999999999999999999999999887653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.6e-39  Score=264.13  Aligned_cols=246  Identities=14%  Similarity=0.174  Sum_probs=206.7

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|+|+   +.++++|+      .++.+++|+.+.....      ....+.+|...|.+++|+|++++|++++
T Consensus         7 ~~~~i~~~~~s~~---~~~l~~~~------~d~~v~i~~~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~~~~   71 (372)
T 1k8k_C            7 LVEPISCHAWNKD---RTQIAICP------NNHEVHIYEKSGNKWV------QVHELKEHNGQVTGVDWAPDSNRIVTCG   71 (372)
T ss_dssp             CSSCCCEEEECTT---SSEEEEEC------SSSEEEEEEEETTEEE------EEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred             cCCCeEEEEECCC---CCEEEEEe------CCCEEEEEeCCCCcEE------eeeeecCCCCcccEEEEeCCCCEEEEEc
Confidence            4678999999987   67888865      5677899988654311      2345678999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce---e-cccccCCccEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---I-LDEPKAHKSVL  158 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~---~-~~~~~~~~~i~  158 (301)
                      .|+.|++||+++++....     .....|...|.+++|+|++++|++++.|+.|++||++.++.   . .....|...|.
T Consensus        72 ~dg~i~vwd~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~  146 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTWKPT-----LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  146 (372)
T ss_dssp             TTSCEEEEEEETTEEEEE-----EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             CCCeEEEEECCCCeeeee-----EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence            999999999987753222     11234678899999999999999999999999999987662   2 22345678999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEeCC------------------CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184          159 DMDFSLDSEFLATTSTDGSARIWKTE------------------DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      +++|+|++++|++++.|+.|++||++                  .++.+..+..+ ...+.+++|+|+++.     ++++
T Consensus       147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-----l~~~  220 (372)
T 1k8k_C          147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-CGWVHGVCFSANGSR-----VAWV  220 (372)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-SSCEEEEEECSSSSE-----EEEE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC-CCeEEEEEECCCCCE-----EEEE
Confidence            99999999999999999999999954                  56777777644 457999999999987     7888


Q ss_pred             CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      +.|+.|++||+++++.+..+..+...+.+++|+|++++|+++ .|+.|++|++.+
T Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          221 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             eCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            999999999999999998999999999999999999988888 899999999987

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.2e-40  Score=268.84  Aligned_cols=257  Identities=18%  Similarity=0.191  Sum_probs=211.0

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC-CeEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~   82 (301)
                      ...|++++|+|+   +.++++|+      .|+.+++|++........ .......+.+|.+.|.++.|+|++ ..|++++
T Consensus       108 ~~~v~~~~~s~~---g~~las~~------~d~~v~iw~~~~~~~~~~-~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s  177 (380)
T 3iz6_a          108 CPWVMECAFAPN---GQSVACGG------LDSACSIFNLSSQADRDG-NMPVSRVLTGHKGYASSCQYVPDQETRLITGS  177 (380)
T ss_dssp             CTTCCCCEECTT---SSEEEECC------SSSCCEEEECCCCSSCCC-SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC
T ss_pred             CCCEEEEEECCC---CCEEEEee------CCCcEEEEECCCCccccC-CccceeeccCCCcceEEEEEecCCCCEEEEEC
Confidence            456889999988   67888876      677889999865332111 112234678999999999999964 5799999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCC-CcceecccccCCccEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP-SLRIILDEPKAHKSVLDM  160 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~i~~~  160 (301)
                      .|++|++||+.+++....+..  .....|...|.+++|+| ++++|++|+.|+.|++||++ ..+.+..+.+|...|.++
T Consensus       178 ~D~~i~~wd~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v  255 (380)
T 3iz6_a          178 GDQTCVLWDVTTGQRISIFGS--EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV  255 (380)
T ss_dssp             TTSCEEEECTTTCCEEEEECC--CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEE
T ss_pred             CCCcEEEEEcCCCcEEEEeec--ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEE
Confidence            999999999988765332211  11234778999999987 88999999999999999997 446666777888999999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC------CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  234 (301)
                      +|+|++++|++++.|++|++||+++++.+..+..+..      ..+.+++|+|+|++     +++++.|+.|++||+.++
T Consensus       256 ~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL-----LFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             EECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSE-----EEEECTTSCEEEEETTTC
T ss_pred             EEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCE-----EEEEECCCCEEEEECCCC
Confidence            9999999999999999999999999998887764322      24889999999997     788999999999999988


Q ss_pred             eEeeee----eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          235 NKIGHK----RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       235 ~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      +.+..+    ..|...|++++|+|+|++|++|+.|+.|++|++...+
T Consensus       331 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          331 EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            776555    5788999999999999999999999999999997654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.5e-39  Score=258.77  Aligned_cols=256  Identities=14%  Similarity=0.176  Sum_probs=207.5

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ..++|+|++|+|+  ..+++++|+      .|+.+++|++.......   ......+.+|...|.+++|+|++++|++++
T Consensus        37 H~~~V~~v~~sp~--~~~~l~S~s------~D~~i~vWd~~~~~~~~---~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           37 HNGWVTQIATTPQ--FPDMILSAS------RDKTIIMWKLTRDETNY---GIPQRALRGHSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             CSSCEEEEEECTT--CTTEEEEEE------TTSCEEEEEECCSSSCS---EEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccCCEEEEEEeCC--CCCEEEEEc------CCCeEEEEECCCCCccc---ceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence            4688999999965  256888866      78889999997654321   122456789999999999999999999999


Q ss_pred             cCCcEEEEEEcCCcccccc------------------------------c------cccCCCCCCCCCeeEEEEeeCC--
Q 022184           83 TNGGCKLFEVYGGATDINL------------------------------L------AKKMPPLQDAGPQKCLSFSVDG--  124 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~------------------------------~------~~~~~~~~~~~~v~~~~~s~~~--  124 (301)
                      .|+.|++|+..........                              .      ........|...+..++|++++  
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred             ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence            9999999998765431000                              0      0011223456788999998854  


Q ss_pred             CEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEE
Q 022184          125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR  204 (301)
Q Consensus       125 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~  204 (301)
                      .++++++.|+.|++||+++++.+..+..|.++|++++|+|++++|++++.|+.|++||+++.+.+..+..+  ..+.++.
T Consensus       186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~  263 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALC  263 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEE
T ss_pred             cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeee
Confidence            56889999999999999999998888889999999999999999999999999999999999998888754  3699999


Q ss_pred             EccCCCcceEEEEEEeCCcceEEEEEccCceEeeee---------eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      |+|++.      +++++.|+.|++||++++..+..+         ..|...|++++|+|++++|++|+.||.|+|||+++
T Consensus       264 ~~~~~~------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          264 FSPNRY------WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             ECSSSS------EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             cCCCCc------eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            999987      356677999999999987765443         35677899999999999999999999999999998


Q ss_pred             ce
Q 022184          276 ME  277 (301)
Q Consensus       276 ~~  277 (301)
                      |.
T Consensus       338 Gt  339 (340)
T 4aow_A          338 GT  339 (340)
T ss_dssp             --
T ss_pred             cC
Confidence            75

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.3e-39  Score=266.58  Aligned_cols=269  Identities=17%  Similarity=0.216  Sum_probs=214.8

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~   81 (301)
                      ...+|+|++|+|+.  ..++++|+      .++.+++|++.......      ...+.+|...|.+++|+| ++++|+++
T Consensus        72 h~~~v~~~~~~~~~--~~~l~s~~------~dg~i~iwd~~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           72 FDRRVTSLEWHPTH--PTTVAVGS------KGGDIILWDYDVQNKTS------FIQGMGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             CSSCEEEEEECSSC--TTEEEEEE------BTSCEEEEETTSTTCEE------EECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEEECCCC--CCEEEEEc------CCCeEEEEeCCCcccce------eeecCCcCCceeEEEeCCCCCCEEEEE
Confidence            35789999999772  26888866      57788999987544221      233457999999999999 78999999


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      +.|+.|++||+.+... ..+    .....+...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++
T Consensus       138 ~~d~~i~iwd~~~~~~-~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~  211 (383)
T 3ei3_B          138 SIRGATTLRDFSGSVI-QVF----AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE  211 (383)
T ss_dssp             ETTTEEEEEETTSCEE-EEE----ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred             eCCCEEEEEECCCCce-EEE----eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence            9999999999985332 111    112234578999999999999999999999999999 5667777888889999999


Q ss_pred             ecCCCc-EEEEEeCCCcEEEEeCCC----CceEEEEeecCCCCeeEEEEcc-CCCcceEEEEEEeCCcceEEEEEccCce
Q 022184          162 FSLDSE-FLATTSTDGSARIWKTED----GVAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       162 ~~~~~~-~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~  235 (301)
                      |+|+++ +|++++.|+.|++||+++    +..+..+.  +...+.+++|+| ++..     +++++.|+.|++||+++++
T Consensus       212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~-----l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNPTDSTK-----LLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEEEEECTTTSCE-----EEEEESSSEEEEEETTBTT
T ss_pred             ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEEEEEcCCCCCE-----EEEEcCCCcEEEEECCCCc
Confidence            999999 999999999999999998    56666663  456799999999 9987     7888999999999999887


Q ss_pred             EeeeeeccC-----------------CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccc-ccCccEEEEEEc
Q 022184          236 KIGHKRLLR-----------------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL-HLGTSIALVEFC  297 (301)
Q Consensus       236 ~~~~~~~~~-----------------~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~s  297 (301)
                      ....+..+.                 ..+..++|+|++++  +++.|+.|++||+.+++.+..+... | ...+..++|+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~-~~~~~~~~~s  361 (383)
T 3ei3_B          285 KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA-AGIISLNKFS  361 (383)
T ss_dssp             SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB-CSCCCEEEEC
T ss_pred             cccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC-CceEEEEEEe
Confidence            665555432                 23444667777766  7789999999999999988777432 4 6778888999


Q ss_pred             cCCC
Q 022184          298 PTQR  301 (301)
Q Consensus       298 pdg~  301 (301)
                      |||+
T Consensus       362 ~~g~  365 (383)
T 3ei3_B          362 PTGD  365 (383)
T ss_dssp             TTSS
T ss_pred             cCcc
Confidence            9985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3e-40  Score=276.23  Aligned_cols=272  Identities=17%  Similarity=0.186  Sum_probs=212.1

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~   82 (301)
                      ...|+|++|+|.  +.+++|+|+      .|+.|+||+++......      ...+.+|.+.|++++|+| ++++|++++
T Consensus       119 ~~~V~~l~~~P~--~~~~lasGs------~dg~i~lWd~~~~~~~~------~~~~~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          119 DRRATSLAWHPT--HPSTVAVGS------KGGDIMLWNFGIKDKPT------FIKGIGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             SSCEEEEEECSS--CTTCEEEEE------TTSCEEEECSSCCSCCE------EECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             CCCEEEEEEeCC--CCCEEEEEe------CCCEEEEEECCCCCcee------EEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence            456999999964  256888876      67788999887554322      334678999999999998 688999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|++|++||+++......     .....+...+.+++|+|++++|++|+.||.|++||++. +.+..+..|...|.+++|
T Consensus       185 ~D~~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~  258 (435)
T 4e54_B          185 MEGTTRLQDFKGNILRVF-----ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVAL  258 (435)
T ss_dssp             SSSCEEEEETTSCEEEEE-----ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEE
T ss_pred             CCCEEEEeeccCCceeEE-----eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeee
Confidence            999999999976543111     11112345678999999999999999999999999864 456677888899999999


Q ss_pred             cCCCc-EEEEEeCCCcEEEEeCCCCceEEEEe--ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184          163 SLDSE-FLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (301)
Q Consensus       163 ~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  239 (301)
                      +|+++ +|++++.|+.|++||+++.+....+.  ..+...|.+++|+|++.+     +++++.|+.|++||+++++....
T Consensus       259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~-----l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR-----LLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE-----EEEEESSSCEEEEESSSSSSEEE
T ss_pred             cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe-----eEEEcCCCEEEEEECCCCccceE
Confidence            99886 78899999999999998866543332  234567999999999997     78999999999999998876655


Q ss_pred             eeccCC------CcEEEEEcCCCCEEEEee------------CCCcEEEEeCCCceeeccccccccCccEEEE-EEccCC
Q 022184          240 KRLLRK------PASVLSISLDGKYLAMGS------------KDGDICVVDVKKMEINHWSKRLHLGTSIALV-EFCPTQ  300 (301)
Q Consensus       240 ~~~~~~------~v~~~~~s~~~~~l~~~~------------~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~-~~spdg  300 (301)
                      +..|..      .+....|+|++.+++++.            .++.|++||..+++.+..+...| ...|.++ +|+|||
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fspdg  412 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNPMG  412 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECTTS
T ss_pred             EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECCCC
Confidence            544432      233456777777666654            23579999999999888776677 7888887 699998


Q ss_pred             C
Q 022184          301 R  301 (301)
Q Consensus       301 ~  301 (301)
                      +
T Consensus       413 ~  413 (435)
T 4e54_B          413 D  413 (435)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-40  Score=272.66  Aligned_cols=259  Identities=11%  Similarity=0.142  Sum_probs=211.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC-CCeEEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~   81 (301)
                      ...+|++++|+|+   +.++++|+      .++.+++|++......    ......+.+|...|.+++|+|+ +++|+++
T Consensus        66 ~~~~v~~~~~s~~---~~~l~~~~------~dg~v~vw~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  132 (416)
T 2pm9_A           66 VDSKFNDLDWSHN---NKIIAGAL------DNGSLELYSTNEANNA----INSMARFSNHSSSVKTVKFNAKQDNVLASG  132 (416)
T ss_dssp             CSSCEEEEEECSS---SSCEEEEE------SSSCEEEECCSSTTSC----CCEEEECCCSSSCCCEEEECSSSTTBEEEE
T ss_pred             cCCceEEEEECCC---CCeEEEEc------cCCeEEEeeccccccc----ccchhhccCCccceEEEEEcCCCCCEEEEE
Confidence            4578999999987   56777765      5678899998763211    1124457889999999999998 8999999


Q ss_pred             ecCCcEEEEEEcCCcccccc--ccccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCeEEEEeCCCcceecccccC-----
Q 022184           82 TTNGGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKA-----  153 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----  153 (301)
                      +.|+.|++||+.+.+.....  .........|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+     
T Consensus       133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  212 (416)
T 2pm9_A          133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG  212 (416)
T ss_dssp             CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred             cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence            99999999999877621100  0001122347789999999998 789999999999999999998887777655     


Q ss_pred             -CccEEEEEecCCC-cEEEEEeCCC---cEEEEeCCCC-ceEEEEeecCCCCeeEEEEcc-CCCcceEEEEEEeCCcceE
Q 022184          154 -HKSVLDMDFSLDS-EFLATTSTDG---SARIWKTEDG-VAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALL  226 (301)
Q Consensus       154 -~~~i~~~~~~~~~-~~l~~~~~d~---~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~i  226 (301)
                       ...|.+++|+|++ .+|++++.|+   .|++||++++ .....+...+...+.+++|+| ++..     +++++.|+.|
T Consensus       213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-----l~s~~~dg~v  287 (416)
T 2pm9_A          213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL-----LLSSGRDNTV  287 (416)
T ss_dssp             CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC-----EEEEESSSEE
T ss_pred             cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe-----EEEEeCCCCE
Confidence             6789999999997 5899999998   9999999986 455555413455799999999 7876     7889999999


Q ss_pred             EEEEccCceEeeeeeccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCceee
Q 022184          227 AVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                      ++||+++++.+..+..|...+.+++|+|++ ++|++++.|+.|++|++.+.+..
T Consensus       288 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          288 LLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             EEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             EEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            999999999999999999999999999998 89999999999999999876543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-39  Score=267.23  Aligned_cols=240  Identities=15%  Similarity=0.236  Sum_probs=201.8

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (301)
                      .|++++|+|+   +.++++|+      .|+.+++|++....        ....+.+|...|.+++|+|++++|++++.|+
T Consensus       125 ~v~~v~~s~d---g~~l~s~~------~d~~i~iwd~~~~~--------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~  187 (393)
T 1erj_A          125 YIRSVCFSPD---GKFLATGA------EDRLIRIWDIENRK--------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDR  187 (393)
T ss_dssp             BEEEEEECTT---SSEEEEEE------TTSCEEEEETTTTE--------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEECCC---CCEEEEEc------CCCeEEEEECCCCc--------EEEEEccCCCCEEEEEEcCCCCEEEEecCCC
Confidence            4899999987   67888866      67788999886432        2345789999999999999999999999999


Q ss_pred             cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceeccc-------ccCCccE
Q 022184           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE-------PKAHKSV  157 (301)
Q Consensus        86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------~~~~~~i  157 (301)
                      +|++||+.+++....        +.+...+.+++|+| ++++|++++.|+.|++||+++++.+..+       ..|...|
T Consensus       188 ~v~iwd~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v  259 (393)
T 1erj_A          188 TVRIWDLRTGQCSLT--------LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV  259 (393)
T ss_dssp             EEEEEETTTTEEEEE--------EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred             cEEEEECCCCeeEEE--------EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence            999999987765222        22456799999999 8999999999999999999988766554       4577899


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEeCCCCc------------eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGV------------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      .+++|+|++++|++++.|+.|++||+++..            +...+..| ...|.+++|+|++.+     +++++.|+.
T Consensus       260 ~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~-----l~sgs~D~~  333 (393)
T 1erj_A          260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQNDEY-----ILSGSKDRG  333 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECGGGCE-----EEEEETTSE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECCCCCE-----EEEEeCCCe
Confidence            999999999999999999999999997642            33444444 457999999999997     789999999


Q ss_pred             EEEEEccCceEeeeeeccCCCcEEEEEcC------CCCEEEEeeCCCcEEEEeCCCc
Q 022184          226 LAVYDISTWNKIGHKRLLRKPASVLSISL------DGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      |++||.++++.+..+.+|...|.+++|++      ++++|++|+.|+.|+||+++..
T Consensus       334 v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            99999999999989999999999999986      6889999999999999998643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-38  Score=260.90  Aligned_cols=265  Identities=15%  Similarity=0.104  Sum_probs=223.9

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|+|+   +.++++|+      .++.+++|++....        ....+.+|...|.+++|+|++++|++++
T Consensus        31 h~~~v~~~~~s~~---~~~l~~~~------~dg~i~vwd~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l~s~~   93 (369)
T 3zwl_B           31 HERPLTQVKYNKE---GDLLFSCS------KDSSASVWYSLNGE--------RLGTLDGHTGTIWSIDVDCFTKYCVTGS   93 (369)
T ss_dssp             CSSCEEEEEECTT---SCEEEEEE------SSSCEEEEETTTCC--------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeceEEEEEEcCC---CCEEEEEe------CCCEEEEEeCCCch--------hhhhhhhcCCcEEEEEEcCCCCEEEEEe
Confidence            4678999999987   66888765      56778999875432        1345778999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC-----CeEEEEeCCCcce-----------
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRI-----------  146 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~v~d~~~~~~-----------  146 (301)
                      .|+.|++||+.+++....        +.+...+.+++|+|+++++++++.+     +.|++||+.....           
T Consensus        94 ~dg~i~iwd~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~  165 (369)
T 3zwl_B           94 ADYSIKLWDVSNGQCVAT--------WKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP  165 (369)
T ss_dssp             TTTEEEEEETTTCCEEEE--------EECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred             CCCeEEEEECCCCcEEEE--------eecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence            999999999988765222        2256789999999999999999998     9999999976542           


Q ss_pred             ecccccCCc--cEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc
Q 022184          147 ILDEPKAHK--SVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (301)
Q Consensus       147 ~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  223 (301)
                      ...+..+..  .+.+++|+|++++|++++.|+.|++||+++ ++.+..+..+ ...+.+++|+|++..     +++++.|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-----l~~~~~d  239 (369)
T 3zwl_B          166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISDMQFSPDLTY-----FITSSRD  239 (369)
T ss_dssp             SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-SSCEEEEEECTTSSE-----EEEEETT
T ss_pred             eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-CCceeEEEECCCCCE-----EEEecCC
Confidence            222333444  899999999999999999999999999998 6666667654 457999999999997     6888899


Q ss_pred             ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC--------------cEEEEeCCCceeeccccccccCc
Q 022184          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG--------------DICVVDVKKMEINHWSKRLHLGT  289 (301)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--------------~i~i~~~~~~~~~~~~~~~~~~~  289 (301)
                      +.|++||+++++.+..+. +...+..++|+|+++++++++.++              .+++||+.+++.+..+ ..| ..
T Consensus       240 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~-~~  316 (369)
T 3zwl_B          240 TNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-QGH-FG  316 (369)
T ss_dssp             SEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-ECC-SS
T ss_pred             ceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-ecc-cC
Confidence            999999999998877666 678899999999999999999888              8999999999988877 678 89


Q ss_pred             cEEEEEEccCCC
Q 022184          290 SIALVEFCPTQR  301 (301)
Q Consensus       290 ~v~~~~~spdg~  301 (301)
                      .|++++|+|||+
T Consensus       317 ~v~~~~~s~~~~  328 (369)
T 3zwl_B          317 PLNTVAISPQGT  328 (369)
T ss_dssp             CEEEEEECTTSS
T ss_pred             cEEEEEECCCCC
Confidence            999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.9e-39  Score=276.82  Aligned_cols=261  Identities=15%  Similarity=0.216  Sum_probs=220.7

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|.+++|+|+   +..+++++      .++.+++|+.+...         ...+.+|...|.+++|+|++++|++++
T Consensus       261 ~~~~v~~v~~~~d---~~~l~~~~------~d~~i~~w~~~~~~---------~~~~~~h~~~v~~~~~~~~~~~l~t~~  322 (577)
T 2ymu_A          261 HSSSVNGVAFRPD---GQTIASAS------DDKTVKLWNRNGQL---------LQTLTGHSSSVWGVAFSPDGQTIASAS  322 (577)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEETTSCE---------EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCEEEEEEcCC---CCEEEEEe------CCCEEEEEeCCCcE---------EEEEecCCCCeEEEEECCCCCEEEEEe
Confidence            3578999999987   56777755      56778998754321         234678999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.|++|+.......        ....|...+.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|
T Consensus       323 ~d~~i~~w~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~  393 (577)
T 2ymu_A          323 DDKTVKLWNRNGQHLQ--------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF  393 (577)
T ss_dssp             TTSCEEEEETTSCEEE--------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEE
T ss_pred             CCCeEEEEeCCCCeeE--------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEE
Confidence            9999999997654331        11236688999999999999999999999999995 56667778888899999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      +|++++|++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.     +++++.|+.|++||.. ++.+..+..
T Consensus       394 s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~-~~~v~~~~~s~d~~~-----l~~~~~d~~v~~w~~~-~~~~~~~~~  465 (577)
T 2ymu_A          394 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVWGVAFSPDDQT-----IASASDDKTVKLWNRN-GQLLQTLTG  465 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEECT-TCCEEEEEECC-SSCEEEEEECTTSSE-----EEEEETTSEEEEEETT-SCEEEEEEC
T ss_pred             CCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCC-CCCeEEEEECCCCCE-----EEEEcCCCEEEEEECC-CCEEEEEcC
Confidence            999999999999999999995 56677777665 457999999999997     7889999999999974 567778888


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |...|.+++|+|++++|++++.|+.|++||. +++.+..+ .+| ...|++++|+|||+
T Consensus       466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~-~~h-~~~v~~l~~s~dg~  521 (577)
T 2ymu_A          466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGH-SSSVRGVAFSPDGQ  521 (577)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE-ECC-SSCEEEEEECTTSS
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE-eCC-CCCEEEEEEcCCCC
Confidence            9999999999999999999999999999996 56666665 678 89999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-40  Score=272.84  Aligned_cols=279  Identities=14%  Similarity=0.197  Sum_probs=225.6

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccc----cCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEE
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRA----SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~   80 (301)
                      .+|.|++|+|+.  ..++++|...+.    .+.++.+++|++......     . ......|...|.+++|+|++++|++
T Consensus        13 ~~v~~~~~sp~g--~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-----~-~~~~~~~~~~v~~~~~s~~~~~l~~   84 (416)
T 2pm9_A           13 SRTATFAWSHDK--IPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-----K-PIASLQVDSKFNDLDWSHNNKIIAG   84 (416)
T ss_dssp             EESCBCCBCSSS--SCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-----S-CSCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             hhcceEeeCCCC--CCEEEEEecCcccccccCCCCeEEEEEccCCCCC-----c-EEEEEecCCceEEEEECCCCCeEEE
Confidence            478999999772  348888754331    147889999998765421     0 1112358899999999999999999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCeEEEEeCCCcc------eecc---c
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR------IILD---E  150 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~------~~~~---~  150 (301)
                      ++.|+.|++|++..........   .....|...|.+++|+|+ +++|++++.|+.|++||+.+++      ....   .
T Consensus        85 ~~~dg~v~vw~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  161 (416)
T 2pm9_A           85 ALDNGSLELYSTNEANNAINSM---ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS  161 (416)
T ss_dssp             EESSSCEEEECCSSTTSCCCEE---EECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred             EccCCeEEEeecccccccccch---hhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc
Confidence            9999999999998732111111   122347789999999998 8999999999999999998876      3222   3


Q ss_pred             ccCCccEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeecC-----CCCeeEEEEccCCCcceEEEEEEeCCcc
Q 022184          151 PKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (301)
Q Consensus       151 ~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~  224 (301)
                      ..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+.     ...+.+++|+|++..+    +++++.++
T Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~~~d~  237 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR----VATATGSD  237 (416)
T ss_dssp             CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE----EEEEECCS
T ss_pred             cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE----EEEEECCC
Confidence            567789999999998 7899999999999999999999988887653     5679999999998542    57777787


Q ss_pred             ---eEEEEEccCc-eEeeeee-ccCCCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          225 ---LLAVYDISTW-NKIGHKR-LLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       225 ---~i~~~d~~~~-~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                         .|++||++++ +.+..+. .|...+.+++|+| ++++|++++.|+.|++||+++++.+..+ ..| ...|.+++|+|
T Consensus       238 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-~~~-~~~v~~~~~s~  315 (416)
T 2pm9_A          238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-PAR-GNWCFKTKFAP  315 (416)
T ss_dssp             SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE-ECS-SSCCCCEEECT
T ss_pred             CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee-cCC-CCceEEEEECC
Confidence               9999999986 5566676 7889999999999 9999999999999999999999888877 578 88999999999


Q ss_pred             CC
Q 022184          299 TQ  300 (301)
Q Consensus       299 dg  300 (301)
                      +|
T Consensus       316 ~~  317 (416)
T 2pm9_A          316 EA  317 (416)
T ss_dssp             TC
T ss_pred             CC
Confidence            97

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.6e-39  Score=254.79  Aligned_cols=232  Identities=13%  Similarity=0.109  Sum_probs=188.0

Q ss_pred             cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCe
Q 022184           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGH  135 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~  135 (301)
                      .+.+|.+.|.+++|+|+|++|++++.|++|++|++........     .....|.++|.+++|+|  ++++|++|+.|++
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~-----~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~   78 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLI-----DTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCC-----EEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEE-----EEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence            4678999999999999999999999999999999975422110     11224788999999986  4899999999999


Q ss_pred             EEEEeCCCcc--eecccccCCccEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCce--EEEEeecCCCCeeEEEEccCC
Q 022184          136 LRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDG  209 (301)
Q Consensus       136 i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~  209 (301)
                      |++||+++++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+.. +...+.+++|+|++
T Consensus        79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~-h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPAT  157 (297)
T ss_dssp             EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC-CSSCEEEEEECCCC
T ss_pred             EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec-ccCccceEeecCCc
Confidence            9999998764  34455667889999999997  88999999999999999987632  233443 45579999999973


Q ss_pred             -------------CcceEEEEEEeCCcceEEEEEccCce----EeeeeeccCCCcEEEEEcCCC---CEEEEeeCCCcEE
Q 022184          210 -------------TKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDG---KYLAMGSKDGDIC  269 (301)
Q Consensus       210 -------------~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~i~  269 (301)
                                   +.     +++++.|+.|++||+++++    ....+..|...|.+++|+|++   ++|++++.|+.|+
T Consensus       158 ~~~~~~~~~~~~~~~-----l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~  232 (297)
T 2pm7_B          158 IEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI  232 (297)
T ss_dssp             ------------CCE-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred             ccccccCCCCCCcce-----EEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence                         34     7889999999999998765    456678899999999999984   8999999999999


Q ss_pred             EEeCCCce--e-eccc-cccccCccEEEEEEccCCC
Q 022184          270 VVDVKKME--I-NHWS-KRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       270 i~~~~~~~--~-~~~~-~~~~~~~~v~~~~~spdg~  301 (301)
                      |||+++..  . ...+ ...| ...|.+++|+|||+
T Consensus       233 iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~  267 (297)
T 2pm7_B          233 IWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGN  267 (297)
T ss_dssp             EEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSC
T ss_pred             EEEeCCCCCccceeeeecccC-CCcEEEEEECCCCC
Confidence            99998642  1 1111 1356 78899999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4e-39  Score=289.16  Aligned_cols=268  Identities=11%  Similarity=0.134  Sum_probs=233.7

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|+|+   +.++++|+      .++.+++|++....        ....+.+|...|.+++|+|++++|++++
T Consensus        12 h~~~v~~i~~sp~---~~~la~~~------~~g~v~iwd~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~~~   74 (814)
T 3mkq_A           12 RSDRVKGIDFHPT---EPWVLTTL------YSGRVEIWNYETQV--------EVRSIQVTETPVRAGKFIARKNWIIVGS   74 (814)
T ss_dssp             ECSCEEEEEECSS---SSEEEEEE------TTSEEEEEETTTTE--------EEEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred             CCCceEEEEECCC---CCEEEEEe------CCCEEEEEECCCCc--------eEEEEecCCCcEEEEEEeCCCCEEEEEe
Confidence            3578999999988   67888865      56778999875432        1335678999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc-ceecccccCCccEEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMD  161 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~  161 (301)
                      .||.|++||+.+++....+       ..|...|.+++|+|++++|++++.||.|++||++++ .....+..|...|.+++
T Consensus        75 ~dg~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~  147 (814)
T 3mkq_A           75 DDFRIRVFNYNTGEKVVDF-------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA  147 (814)
T ss_dssp             TTSEEEEEETTTCCEEEEE-------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEE-------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence            9999999999887653322       236788999999999999999999999999999886 55566677888999999


Q ss_pred             ecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEcc--CCCcceEEEEEEeCCcceEEEEEccCceEee
Q 022184          162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (301)
Q Consensus       162 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  238 (301)
                      |+| +++.|++++.|+.|++||++++.....+..++...+..++|+|  ++..     +++++.++.|++||+++++.+.
T Consensus       148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~~~~~dg~i~~~d~~~~~~~~  222 (814)
T 3mkq_A          148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-----MITASDDLTIKIWDYQTKSCVA  222 (814)
T ss_dssp             EETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE-----EEEECTTSEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE-----EEEEeCCCEEEEEECCCCcEEE
Confidence            999 8899999999999999999998888888777666799999999  8876     7889999999999999999998


Q ss_pred             eeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          239 HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       239 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+..|...+.+++|+|++++|++++.||.|++||+.+++....+ ..| ...+.+++|+|+|+
T Consensus       223 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~-~~~v~~~~~~~~~~  283 (814)
T 3mkq_A          223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL-NVG-LERSWCIATHPTGR  283 (814)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE-CCS-SSSEEEEEECTTCG
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ecC-CCcEEEEEEccCCC
Confidence            89999999999999999999999999999999999999888776 456 78999999999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=7.3e-39  Score=265.24  Aligned_cols=259  Identities=10%  Similarity=0.124  Sum_probs=206.6

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      .++.+.+|+++..+..    ......+.+|.+.|.+++|+| ++++|++++.|+.|++|++.++...............|
T Consensus        55 ~~g~i~v~~~~~~~~~----~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h  130 (402)
T 2aq5_A           55 GGGAFLVLPLGKTGRV----DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH  130 (402)
T ss_dssp             SSCCEEEEETTCCEEC----CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC
T ss_pred             CCCEEEEEECccCCCC----CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC
Confidence            5778899998654421    122345789999999999999 99999999999999999998774322111111122247


Q ss_pred             CCCeeEEEEeeCC-CEEEEeecCCeEEEEeCCCcceeccc--ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 022184          112 AGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (301)
Q Consensus       112 ~~~v~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  188 (301)
                      ...|.+++|+|++ ++|++++.|+.|++||+++++.+..+  ..|...|.+++|+|++++|++++.|+.|++||+++++.
T Consensus       131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV  210 (402)
T ss_dssp             SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE
T ss_pred             CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce
Confidence            7899999999998 69999999999999999999888777  67888999999999999999999999999999999999


Q ss_pred             EEEE-eecCCCCeeEEEEccCCCcceEEEEEEe---CCcceEEEEEccCceE-eeeee-ccCCCcEEEEEcCCCCEEEE-
Q 022184          189 WTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQR---GDKALLAVYDISTWNK-IGHKR-LLRKPASVLSISLDGKYLAM-  261 (301)
Q Consensus       189 ~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~d~~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~~-  261 (301)
                      +..+ ..+....+..+.|+|++..     ++++   +.++.|++||+++.+. +.... .+...+..++|+|++++|++ 
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~-----l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  285 (402)
T 2aq5_A          211 VAEKDRPHEGTRPVHAVFVSEGKI-----LTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLC  285 (402)
T ss_dssp             EEEEECSSCSSSCCEEEECSTTEE-----EEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEE
T ss_pred             eeeeccCCCCCcceEEEEcCCCcE-----EEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEE
Confidence            8888 4554445899999999886     5666   7899999999988654 22222 45678999999999999975 


Q ss_pred             eeCCCcEEEEeCCCcee-ecccc-ccccCccEEEEEEccCCC
Q 022184          262 GSKDGDICVVDVKKMEI-NHWSK-RLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       262 ~~~d~~i~i~~~~~~~~-~~~~~-~~~~~~~v~~~~~spdg~  301 (301)
                      ++.|+.|++||+.+++. +..+. ..| ..+|.+++|+|+|+
T Consensus       286 g~~dg~i~i~d~~~~~~~~~~l~~~~~-~~~v~~~~~sp~~~  326 (402)
T 2aq5_A          286 GKGDSSIRYFEITSEAPFLHYLSMFSS-KESQRGMGYMPKRG  326 (402)
T ss_dssp             ETTCSCEEEEEECSSTTCEEEEEEECC-SSCCSEEEECCGGG
T ss_pred             EcCCCeEEEEEecCCCcceEeeccccc-CCcccceEEecccc
Confidence            45799999999998873 32221 124 68999999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.5e-40  Score=269.66  Aligned_cols=244  Identities=13%  Similarity=0.125  Sum_probs=192.8

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      .++|+|++|+|+   +.++++|+      .++.+++|+.+....      .....+.+|...|.+++|+|++++|++++.
T Consensus        11 ~~~v~~~~~s~~---g~~l~~~~------~d~~i~iw~~~~~~~------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~   75 (377)
T 3dwl_C           11 PKPSYEHAFNSQ---RTEFVTTT------ATNQVELYEQDGNGW------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQ   75 (377)
T ss_dssp             SSCCSCCEECSS---SSEEECCC------SSSCBCEEEEETTEE------EECCCBCCCSSCEEEEEECTTTCCEEEEET
T ss_pred             CCcEEEEEECCC---CCEEEEec------CCCEEEEEEccCCce------EEEEEEecCCceEEEEEEeCCCCEEEEEeC
Confidence            578999999987   67888866      567889999875421      124457899999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce---eccccc-CCccEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPK-AHKSVLD  159 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~-~~~~i~~  159 (301)
                      |+.|++||+.+++....    ......|...|.+++|+|++++|++++.|+.|++||+++++.   ...+.. |...|.+
T Consensus        76 d~~v~vwd~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~  151 (377)
T 3dwl_C           76 DRNAYVYEKRPDGTWKQ----TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS  151 (377)
T ss_dssp             TSSEEEC------CCCC----EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred             CCeEEEEEcCCCCceee----eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence            99999999988761000    122234778999999999999999999999999999988763   455655 7889999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEeCCC------------------CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184          160 MDFSLDSEFLATTSTDGSARIWKTED------------------GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~i~d~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                      ++|+|++++|++++.|+.|++||++.                  ++.+..+  .+...|.+++|+|++++     +++++
T Consensus       152 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~-----l~~~~  224 (377)
T 3dwl_C          152 LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNA-----LAYAG  224 (377)
T ss_dssp             EEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSC-----EEEEE
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCE-----EEEEe
Confidence            99999999999999999999999852                  3444444  45667999999999997     78899


Q ss_pred             CcceEEEEEccCceE----eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          222 DKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      .|+.|++||+++++.    +..+..|...|.+++|+|++++|++++.++.+ +|+..
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          225 HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            999999999999876    77888899999999999999999998766555 77665

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-38  Score=281.00  Aligned_cols=273  Identities=12%  Similarity=0.148  Sum_probs=220.4

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      +..+|+|++|+++  +..++++|+      .|+.+++|++.......   ......+.+|...|.+++|+|++++|++++
T Consensus       381 H~~~V~~v~~~~~--~~~~l~s~s------~D~~i~~W~~~~~~~~~---~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs  449 (694)
T 3dm0_A          381 HTDMVTAIATPID--NADIIVSAS------RDKSIILWKLTKDDKAY---GVAQRRLTGHSHFVEDVVLSSDGQFALSGS  449 (694)
T ss_dssp             CSSCEEEEECCTT--CCSEEEEEE------TTSEEEEEECCCSTTCS---CEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCceeEEEEecCC--CCCEEEEEe------CCCcEEEEEccCCCccc---ccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence            4678999999965  356888766      77888999987644221   122346789999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec---ccccCCccEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL---DEPKAHKSVLD  159 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~  159 (301)
                      .|++|++||+.++.....+       ..|...|.+++|+|++++|++++.|++|++||........   ....|...|.+
T Consensus       450 ~Dg~v~vwd~~~~~~~~~~-------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~  522 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTRRF-------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC  522 (694)
T ss_dssp             TTSEEEEEETTTTEEEEEE-------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred             CCCcEEEEECCCCcceeEE-------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence            9999999999877653222       2477899999999999999999999999999986543322   12356678999


Q ss_pred             EEecCCC--cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe
Q 022184          160 MDFSLDS--EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (301)
Q Consensus       160 ~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  237 (301)
                      ++|+|++  ..|++++.|++|++||+++++....+..|. ..|.+++|+|+++.     +++++.|+.|++||+++++.+
T Consensus       523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~-----l~sg~~Dg~i~iwd~~~~~~~  596 (694)
T 3dm0_A          523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT-GYVSTVAVSPDGSL-----CASGGKDGVVLLWDLAEGKKL  596 (694)
T ss_dssp             EEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSE-----EEEEETTSBCEEEETTTTEEE
T ss_pred             EEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC-CCEEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCceE
Confidence            9999987  589999999999999999999888887654 57999999999997     789999999999999999887


Q ss_pred             eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc-----------------cCccEEEEEEccCC
Q 022184          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH-----------------LGTSIALVEFCPTQ  300 (301)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-----------------~~~~v~~~~~spdg  300 (301)
                      ..+.. ...+.+++|+|++.+|++++ ++.|++||+++++.+..+....                 ....+++++|+|||
T Consensus       597 ~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg  674 (694)
T 3dm0_A          597 YSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG  674 (694)
T ss_dssp             ECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred             EEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence            66654 56799999999998888776 5569999999988765442110                 01237899999998


Q ss_pred             C
Q 022184          301 R  301 (301)
Q Consensus       301 ~  301 (301)
                      +
T Consensus       675 ~  675 (694)
T 3dm0_A          675 S  675 (694)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.9e-38  Score=255.18  Aligned_cols=268  Identities=13%  Similarity=0.161  Sum_probs=217.6

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..+|.+++|+|+   +++++++....      .+..|... ....       .....+|.+.|.+++|+|++++|++++ 
T Consensus         9 ~~~v~~~~~s~d---g~~~~~~~~~~------~~~~~~~~-~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~~~~-   70 (337)
T 1gxr_A            9 SKPAYSFHVTAD---GQMQPVPFPPD------ALIGPGIP-RHAR-------QINTLNHGEVVCAVTISNPTRHVYTGG-   70 (337)
T ss_dssp             EEECCEEEECSS---SCEEECCCCTT------SSSSTTCC-SEEE-------EEEEECCSSCCCEEEECSSSSEEEEEC-
T ss_pred             CCceeEEEECCC---CCEEEeecCCC------cEeccccC-Cccc-------cceeccCCCceEEEEEecCCcEEEEcC-
Confidence            468999999988   67887765322      22233221 1111       122347999999999999999999998 


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc--eecccccCCccEEEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVLDMD  161 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~i~~~~  161 (301)
                      |+.|++|++.+.........  .....|...+.+++|+|++++|++++.|+.|++||+++++  ....+..+...+.+++
T Consensus        71 dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~  148 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA  148 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEE--EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred             CCeEEEEECCCCCceeeeec--ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence            99999999987654222211  1122467899999999999999999999999999998876  4555667778999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      |+|++++|++++.|+.|++||+++++.+..+..+ ...+.+++|+|+++.     +++++.|+.|++||+++++.+..+ 
T Consensus       149 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-----l~~~~~dg~i~~~d~~~~~~~~~~-  221 (337)
T 1gxr_A          149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDISNDGTK-----LWTGGLDNTVRSWDLREGRQLQQH-  221 (337)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTTEEEEEE-
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc-cCceEEEEECCCCCE-----EEEEecCCcEEEEECCCCceEeee-
Confidence            9999999999999999999999999988888765 457999999999987     688889999999999998887665 


Q ss_pred             ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+...+.+++|+|++++|++++.|+.|++||+.+++....  ..| ...|.+++|+|||+
T Consensus       222 ~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~  278 (337)
T 1gxr_A          222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL--HLH-ESCVLSLKFAYCGK  278 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE--CCC-SSCEEEEEECTTSS
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE--cCC-ccceeEEEECCCCC
Confidence            4677899999999999999999999999999999876543  467 88999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.2e-38  Score=258.00  Aligned_cols=272  Identities=8%  Similarity=0.107  Sum_probs=213.0

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC---CCeEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---GDDFV   79 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~   79 (301)
                      ...+|++++|+|+.  ..++++|+..   ..++.+++|+++......       ....+|...|.+++|+|+   +++|+
T Consensus        17 h~~~v~~~~~~p~~--~~l~~~~s~~---~~d~~v~iw~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~l~   84 (357)
T 3i2n_A           17 FNYTVFDCKWVPCS--AKFVTMGNFA---RGTGVIQLYEIQHGDLKL-------LREIEKAKPIKCGTFGATSLQQRYLA   84 (357)
T ss_dssp             CSSCEEEEEECTTS--SEEEEEEC-----CCCEEEEEEEECSSSEEE-------EEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred             CCCceEEEEEcCCC--ceEEEecCcc---CCCcEEEEEeCCCCcccc-------eeeecccCcEEEEEEcCCCCCCceEE
Confidence            45789999999762  3566665420   127788999987543211       122378999999999998   69999


Q ss_pred             EEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEE------EeeCCCEEEEeecCCeEEEEeCCCcc-eeccccc
Q 022184           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLS------FSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPK  152 (301)
Q Consensus        80 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~  152 (301)
                      +++.|+.|++||+.+.+.....      ...|...|.++.      |+|++++|++++.|+.|++||+++++ ....+..
T Consensus        85 ~~~~dg~i~iwd~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  158 (357)
T 3i2n_A           85 TGDFGGNLHIWNLEAPEMPVYS------VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP  158 (357)
T ss_dssp             EEETTSCEEEECTTSCSSCSEE------ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred             EecCCCeEEEEeCCCCCccEEE------EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc
Confidence            9999999999999877621111      124778899995      57899999999999999999999876 4555544


Q ss_pred             CCc----cEEEEE----ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEcc---CCCcceEEEEEEeC
Q 022184          153 AHK----SVLDMD----FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK---DGTKPFLFCTVQRG  221 (301)
Q Consensus       153 ~~~----~i~~~~----~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~  221 (301)
                      +.+    .+.+++    |+|++++|++++.|+.|++||+++++......  +...+.+++|+|   ++..     +++++
T Consensus       159 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-----l~~~~  231 (357)
T 3i2n_A          159 VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN--IKNGVCSLEFDRKDISMNK-----LVATS  231 (357)
T ss_dssp             CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEESCSSSSCCE-----EEEEE
T ss_pred             cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC--CCCceEEEEcCCCCCCCCE-----EEEEC
Confidence            333    788888    78899999999999999999999988755433  345799999999   8887     68889


Q ss_pred             CcceEEEEEccCceEeeeee-----ccCCCcEEEEEcCCCC-EEEEeeCCCcEEEEeCCCce------------------
Q 022184          222 DKALLAVYDISTWNKIGHKR-----LLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKME------------------  277 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~~~~~~~------------------  277 (301)
                      .|+.|++||+++++....+.     .|...|.+++|+|+++ +|++++.||.|++||++++.                  
T Consensus       232 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~  311 (357)
T 3i2n_A          232 LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV  311 (357)
T ss_dssp             STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred             CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence            99999999999877654444     7889999999999998 89999999999999997542                  


Q ss_pred             -eeccccccccCccEEEEEEccCCC
Q 022184          278 -INHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       278 -~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                       .+..+ ..| ..+|++++|+|+|+
T Consensus       312 ~~~~~~-~~~-~~~v~~~~~s~~~~  334 (357)
T 3i2n_A          312 SLLQNV-TLS-TQPISSLDWSPDKR  334 (357)
T ss_dssp             EEEEEE-ECC-SSCEEEEEECSSST
T ss_pred             ceeecc-ccC-CCCeeEEEEcCCCC
Confidence             33333 567 88999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.6e-38  Score=257.49  Aligned_cols=265  Identities=11%  Similarity=0.035  Sum_probs=218.9

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~   81 (301)
                      ...+|+|++|+|+   +.++++|+      .++.+++|+++.......     ...+.+|...|.+++|+|+++ +|+++
T Consensus        10 h~~~v~~~~~s~~---~~~l~~~~------~d~~v~iw~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~   75 (342)
T 1yfq_A           10 PKDYISDIKIIPS---KSLLLITS------WDGSLTVYKFDIQAKNVD-----LLQSLRYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             CSSCEEEEEEEGG---GTEEEEEE------TTSEEEEEEEETTTTEEE-----EEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred             CCCcEEEEEEcCC---CCEEEEEc------CCCeEEEEEeCCCCcccc-----ceeeeecCCceEEEEECCCCCcEEEEE
Confidence            4678999999987   67888765      677889999976552221     123458999999999999999 99999


Q ss_pred             ecCCcEEEEEE-cCCccccccccccCCCCC--CCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC---------cceecc
Q 022184           82 TTNGGCKLFEV-YGGATDINLLAKKMPPLQ--DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---------LRIILD  149 (301)
Q Consensus        82 ~~d~~i~~w~~-~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~---------~~~~~~  149 (301)
                      +.|+.|++|++ .+++.        .....  |...|.+++|+| +++|++++.|+.|++||+++         ++.+..
T Consensus        76 ~~dg~i~~wd~~~~~~~--------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  146 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPSF--------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             ETTSCEEEECSSSSSSE--------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             cCCCeEEEEEeccCCce--------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence            99999999999 77653        11223  778999999999 99999999999999999987         766655


Q ss_pred             cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-Cce-EEEEeecCCCCeeEEEEcc-CCCcceEEEEEEeCCcceE
Q 022184          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVA-WTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALL  226 (301)
Q Consensus       150 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~i  226 (301)
                      +. +...+.+++|+|++  +++++.|+.|++||+++ +.. .......+...+.+++|+| +++.     +++++.++.|
T Consensus       147 ~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-----l~~~~~dg~i  218 (342)
T 1yfq_A          147 TK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-----YACSSIDGRV  218 (342)
T ss_dssp             SS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE-----EEEEETTSEE
T ss_pred             Ee-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCE-----EEEEecCCcE
Confidence            54 77899999999887  99999999999999998 553 2333444566799999999 9987     6888899999


Q ss_pred             EEEEccCc------eEeeeeeccCC---------CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccE
Q 022184          227 AVYDISTW------NKIGHKRLLRK---------PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (301)
Q Consensus       227 ~~~d~~~~------~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v  291 (301)
                      ++||++..      +....+..|..         .|.+++|+|++++|++++.||.|++||+.+++.+..+...| ..+|
T Consensus       219 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~~~v  297 (342)
T 1yfq_A          219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSV  297 (342)
T ss_dssp             EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEE
T ss_pred             EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc-CCCc
Confidence            99999876      55666666654         89999999999999999999999999999999888775445 7889


Q ss_pred             EEEEEccCCC
Q 022184          292 ALVEFCPTQR  301 (301)
Q Consensus       292 ~~~~~spdg~  301 (301)
                      .+++  |||+
T Consensus       298 ~~~~--~~~~  305 (342)
T 1yfq_A          298 VKIA--CSDN  305 (342)
T ss_dssp             EEEE--ECSS
T ss_pred             eEec--CCCC
Confidence            9998  8874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.3e-39  Score=258.06  Aligned_cols=246  Identities=10%  Similarity=0.091  Sum_probs=196.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--CCCeEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~   80 (301)
                      ...+|++++|+|+   ++++|+|+      .|+.+++|++......      ....+.+|.+.|.+++|+|  ++++|++
T Consensus        12 H~~~V~~v~~s~~---g~~lasgs------~D~~v~lwd~~~~~~~------~~~~l~gH~~~V~~v~~~~~~~~~~l~s   76 (316)
T 3bg1_A           12 HEDMIHDAQMDYY---GTRLATCS------SDRSVKIFDVRNGGQI------LIADLRGHEGPVWQVAWAHPMYGNILAS   76 (316)
T ss_dssp             --CCEEEEEECGG---GCEEEEEE------TTTEEEEEEEETTEEE------EEEEEECCSSCEEEEEECCGGGSSCEEE
T ss_pred             ccCeEEEeeEcCC---CCEEEEEe------CCCeEEEEEecCCCcE------EEEEEcCCCccEEEEEeCCCCCCCEEEE
Confidence            4678999999988   67888866      7788899998654321      1345789999999999986  4899999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC--CCEEEEeecCCeEEEEeCCCcce---ecccccCCc
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHK  155 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~  155 (301)
                      ++.|++|++||++++.....     .....|...|.+++|+|+  +.+|++++.|+.|++||++.+..   ...+..|..
T Consensus        77 ~s~D~~v~iWd~~~~~~~~~-----~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~  151 (316)
T 3bg1_A           77 CSYDRKVIIWREENGTWEKS-----HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI  151 (316)
T ss_dssp             EETTSCEEEECCSSSCCCEE-----EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred             EECCCEEEEEECCCCcceEE-----EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence            99999999999987542111     111247789999999997  78999999999999999987532   344556778


Q ss_pred             cEEEEEecCC-----------------CcEEEEEeCCCcEEEEeCCCC---ceEEEEeecCCCCeeEEEEccCC----Cc
Q 022184          156 SVLDMDFSLD-----------------SEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKDG----TK  211 (301)
Q Consensus       156 ~i~~~~~~~~-----------------~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~  211 (301)
                      .+.+++|+|+                 +++|++++.|+.|++||++..   +....+..| ...|.+++|+|++    ..
T Consensus       152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h-~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH-SDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC-SSCEEEEECCCCSSCSCCE
T ss_pred             CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC-CCceEEEEecCCCCCCCce
Confidence            8999999997                 468999999999999999765   344455544 4579999999987    44


Q ss_pred             ceEEEEEEeCCcceEEEEEccCc---e-EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          212 PFLFCTVQRGDKALLAVYDISTW---N-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~---~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                           +++++.|++|++||+++.   + ....+..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus       231 -----las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          231 -----IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             -----EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             -----EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence                 689999999999998762   1 123355678899999999999999999999999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-38  Score=264.51  Aligned_cols=270  Identities=17%  Similarity=0.225  Sum_probs=223.6

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..+|++++|+|+   +.++++|+      .++.+++|+.  ...       ....+.+|...|.+++|+|++++|++++.
T Consensus       108 ~~~v~~~~~s~~---~~~l~~~~------~dg~i~i~~~--~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (425)
T 1r5m_A          108 TNQVTCLAWSHD---GNSIVTGV------ENGELRLWNK--TGA-------LLNVLNFHRAPIVSVKWNKDGTHIISMDV  169 (425)
T ss_dssp             CBCEEEEEECTT---SSEEEEEE------TTSCEEEEET--TSC-------EEEEECCCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCceEEEEEcCC---CCEEEEEe------CCCeEEEEeC--CCC-------eeeeccCCCccEEEEEECCCCCEEEEEec
Confidence            458999999987   67888765      5677899972  221       13446789999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCC--------CCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCc
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMP--------PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  155 (301)
                      |+.|++||+.+++....+......        .......+.++.|+|++ .+++++.++.|++||+++++.+..+..|..
T Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~  248 (425)
T 1r5m_A          170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG  248 (425)
T ss_dssp             TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred             CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence            999999999877653322211100        00011228899999985 588899999999999999888878888889


Q ss_pred             cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  235 (301)
                      .|.+++|+|++++|++++.|+.|++||+++++....+..+ ...+.+++|+|++ .     +++++.|+.|++||+++++
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~-----l~~~~~d~~i~i~d~~~~~  321 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSIVSASWVGDD-K-----VISCSMDGSVRLWSLKQNT  321 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCEEEEEEETTT-E-----EEEEETTSEEEEEETTTTE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccEEEEEECCCC-E-----EEEEeCCCcEEEEECCCCc
Confidence            9999999999999999999999999999999888888654 4579999999999 4     6888999999999999999


Q ss_pred             EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce--------------------eeccccccccCc--cEEE
Q 022184          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--------------------INHWSKRLHLGT--SIAL  293 (301)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~--------------------~~~~~~~~~~~~--~v~~  293 (301)
                      .+..+..+...+.+++|+|++++|++++.||.|++||+.+++                    .+..+ ..| ..  .|++
T Consensus       322 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~v~~  399 (425)
T 1r5m_A          322 LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSS-QDNDYIFD  399 (425)
T ss_dssp             EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE-CCT-TCCCCEEE
T ss_pred             EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh-cCc-ccCCceEE
Confidence            998888899999999999999999999999999999999887                    66665 455 44  9999


Q ss_pred             EEEccCCC
Q 022184          294 VEFCPTQR  301 (301)
Q Consensus       294 ~~~spdg~  301 (301)
                      ++|+|||+
T Consensus       400 ~~~s~~~~  407 (425)
T 1r5m_A          400 LSWNCAGN  407 (425)
T ss_dssp             EEECTTSS
T ss_pred             EEccCCCc
Confidence            99999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-37  Score=247.65  Aligned_cols=262  Identities=12%  Similarity=0.120  Sum_probs=220.7

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++| ++   ..++++|+      .++.+++|+++...        ....+..|...|.+++|+|++++|++++
T Consensus        17 h~~~v~~~~~-~~---~~~l~s~~------~dg~v~vw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~   78 (313)
T 3odt_A           17 HDQDVRDVVA-VD---DSKVASVS------RDGTVRLWSKDDQW--------LGTVVYTGQGFLNSVCYDSEKELLLFGG   78 (313)
T ss_dssp             CSSCEEEEEE-EE---TTEEEEEE------TTSEEEEEEESSSE--------EEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCcEEEEe-cC---CCEEEEEE------cCCcEEEEECCCCE--------EEEEeecCCccEEEEEECCCCCEEEEec
Confidence            4678999999 76   56777765      67788999985432        1334668899999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.|++|++.........    .....|...|.+++|  +++++++++.|+.|++||  .++....+..|...+.+++|
T Consensus        79 ~dg~i~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~  150 (313)
T 3odt_A           79 KDTMINGVPLFATSGEDPL----YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKV  150 (313)
T ss_dssp             TTSCEEEEETTCCTTSCC-----CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEE
T ss_pred             CCCeEEEEEeeecCCCCcc----cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEE
Confidence            9999999999765432111    112246788999999  577999999999999999  56666777788899999999


Q ss_pred             cC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       163 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      .| +++++++++.|+.|++||  ..+....+...+...+.+++|+|++.      +++++.++.|++||+++++.+..+.
T Consensus       151 ~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~dg~i~i~d~~~~~~~~~~~  222 (313)
T 3odt_A          151 VSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH------FISCSNDGLIKLVDMHTGDVLRTYE  222 (313)
T ss_dssp             EETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE------EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe------EEEccCCCeEEEEECCchhhhhhhh
Confidence            98 899999999999999999  45666677665667899999999998      4788899999999999999999999


Q ss_pred             ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .|...+.+++|+|++ .|++++.||.|++||+.+++....+ ..| ...|.+++|+|+|+
T Consensus       223 ~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~-~~~-~~~i~~~~~~~~~~  279 (313)
T 3odt_A          223 GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI-TLP-AISIWSVDCMSNGD  279 (313)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE-ECS-SSCEEEEEECTTSC
T ss_pred             cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE-ecc-CceEEEEEEccCCC
Confidence            999999999999999 5899999999999999999988877 567 78999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-38  Score=265.56  Aligned_cols=264  Identities=11%  Similarity=0.136  Sum_probs=210.6

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      +.+..|+++   +.++++|+      .++.+++|++....        ....+.+|.+.|.+++|+|++++|++++.|+.
T Consensus       100 ~~~~~~~~~---~~~l~~~~------~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~  162 (420)
T 3vl1_A          100 TAVDTAKLQ---MRRFILGT------TEGDIKVLDSNFNL--------QREIDQAHVSEITKLKFFPSGEALISSSQDMQ  162 (420)
T ss_dssp             EEEEEECSS---SCEEEEEE------TTSCEEEECTTSCE--------EEEETTSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eEEEEEecC---CCEEEEEE------CCCCEEEEeCCCcc--------eeeecccccCccEEEEECCCCCEEEEEeCCCe
Confidence            444466666   56788765      56778999875322        13346789999999999999999999999999


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC---C---------
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---H---------  154 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~---~---------  154 (301)
                      |++||+.+++....+       ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+   .         
T Consensus       163 i~iwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  235 (420)
T 3vl1_A          163 LKIWSVKDGSNPRTL-------IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF  235 (420)
T ss_dssp             EEEEETTTCCCCEEE-------ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE
T ss_pred             EEEEeCCCCcCceEE-------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe
Confidence            999999877653222       237789999999999999999999999999999998877666532   2         


Q ss_pred             ------------ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC-cceEEEEEEeC
Q 022184          155 ------------KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-KPFLFCTVQRG  221 (301)
Q Consensus       155 ------------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~  221 (301)
                                  ..+.+++|+|++++|++++.|+.|++||+++++....+...+...+.+++|+|++. .     +++++
T Consensus       236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----l~~g~  310 (420)
T 3vl1_A          236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANY-----IYAGY  310 (420)
T ss_dssp             ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTE-----EEEEE
T ss_pred             cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCE-----EEEEe
Confidence                        33444556889999999999999999999999988888776677899999999998 5     68899


Q ss_pred             CcceEEEEEccCceE-eeeeec-cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeec--------cccccccCccE
Q 022184          222 DKALLAVYDISTWNK-IGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--------WSKRLHLGTSI  291 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~--------~~~~~~~~~~v  291 (301)
                      .|+.|++||+++++. +..+.. +...+.++.+ +++++|++++.|+.|++|++...+...        .....| ...|
T Consensus       311 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~v  388 (420)
T 3vl1_A          311 ENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN-DDAV  388 (420)
T ss_dssp             TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-SCCC
T ss_pred             CCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccC-Ccce
Confidence            999999999998754 555665 5667777755 578899999999999999988742211        111345 7889


Q ss_pred             EEEEEccCCC
Q 022184          292 ALVEFCPTQR  301 (301)
Q Consensus       292 ~~~~~spdg~  301 (301)
                      .+++|+|||+
T Consensus       389 ~~~~~s~~~~  398 (420)
T 3vl1_A          389 SQFCYVSDDE  398 (420)
T ss_dssp             CEEEEECCSS
T ss_pred             EEEEEccCCC
Confidence            9999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.6e-39  Score=257.87  Aligned_cols=234  Identities=12%  Similarity=0.089  Sum_probs=184.1

Q ss_pred             ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCC
Q 022184           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDG  134 (301)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg  134 (301)
                      ..+.+|.+.|.+++|+|+|++|++++.|++|++||+.++.....     .....|...|.+++|+|  ++++|++++.|+
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~-----~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~   81 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI-----ADLRGHEGPVWQVAWAHPMYGNILASCSYDR   81 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE-----EEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE-----EEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence            45679999999999999999999999999999999987642111     11124788999999986  489999999999


Q ss_pred             eEEEEeCCCcc--eecccccCCccEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCceEE--EEeecCCCCeeEEEEccC
Q 022184          135 HLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWT--FLTRNSDEKIELCRFSKD  208 (301)
Q Consensus       135 ~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~  208 (301)
                      +|++||+++++  ....+..|...|.+++|+|+  +.+|++++.|+.|++||++.+....  .....+...+.+++|+|+
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence            99999998764  44556678889999999997  7899999999999999998764322  122234456899999998


Q ss_pred             C-----------------CcceEEEEEEeCCcceEEEEEccCc---eEeeeeeccCCCcEEEEEcCCC----CEEEEeeC
Q 022184          209 G-----------------TKPFLFCTVQRGDKALLAVYDISTW---NKIGHKRLLRKPASVLSISLDG----KYLAMGSK  264 (301)
Q Consensus       209 ~-----------------~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~  264 (301)
                      .                 +.     +++++.|+.|++||++..   +.+..+..|...|.+++|+|++    ++|++++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~-----l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~  236 (316)
T 3bg1_A          162 VVPGSLIDHPSGQKPNYIKR-----FASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ  236 (316)
T ss_dssp             CCC------CCSCCCCCCCB-----EECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred             cCCccccccccccCccccce-----EEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence            3                 34     689999999999999754   4566788899999999999986    89999999


Q ss_pred             CCcEEEEeCCCc---eeeccccccccCccEEEEEEccCCC
Q 022184          265 DGDICVVDVKKM---EINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       265 d~~i~i~~~~~~---~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |++|++|++.+.   +........| ...|.+++|+|+|+
T Consensus       237 D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~  275 (316)
T 3bg1_A          237 DGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITAN  275 (316)
T ss_dssp             TCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTC
T ss_pred             CCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCC
Confidence            999999999863   2111222457 88999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-39  Score=267.40  Aligned_cols=277  Identities=13%  Similarity=0.122  Sum_probs=215.4

Q ss_pred             CceeEEEeeee-cCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            4 GGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~-~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ..+|+|++|+| +   +.++++|+      .|+.+++|++........  ...... .+|...|.+++|+|++++|++++
T Consensus        63 ~~~V~~~~~s~~~---~~~l~s~s------~dg~v~vwd~~~~~~~~~--~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s  130 (437)
T 3gre_A           63 PNSITSSAVSPGE---TPYLITGS------DQGVIKIWNLKEIIVGEV--YSSSLT-YDCSSTVTQITMIPNFDAFAVSS  130 (437)
T ss_dssp             TSCEEEEEEECSS---SCEEEEEE------TTSEEEEEEHHHHHTTCC--CSCSEE-EECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEECCCC---CCEEEEec------CCceEEEeECcccccCcc--cceeee-ccCCCCEEEEEEeCCCCEEEEEe
Confidence            57999999998 6   66888866      678889999865211110  001111 25899999999999999999999


Q ss_pred             cCCcEEEEEEc---CCccccccccccC---CCCC--CCCCeeEEE--EeeCCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184           83 TNGGCKLFEVY---GGATDINLLAKKM---PPLQ--DAGPQKCLS--FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (301)
Q Consensus        83 ~d~~i~~w~~~---~~~~~~~~~~~~~---~~~~--~~~~v~~~~--~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  152 (301)
                      .|+.|++||++   .++..........   ....  +...+.++.  +++++++|++++.|+.|++||+++++.+..+..
T Consensus       131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  210 (437)
T 3gre_A          131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN  210 (437)
T ss_dssp             TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence            99999999995   3332111111100   0001  456677777  557899999999999999999999998888877


Q ss_pred             --CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEcc----CCCcceEEEEEEeCCcceE
Q 022184          153 --AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK----DGTKPFLFCTVQRGDKALL  226 (301)
Q Consensus       153 --~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~i  226 (301)
                        |...|++++|+|++++|++++.|+.|++||+++++.+..+...+..+|.+++|+|    ++..     +++++.|+.|
T Consensus       211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~-----l~s~~~dg~i  285 (437)
T 3gre_A          211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI-----VVGGSSKTFL  285 (437)
T ss_dssp             CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE-----EEEESTTEEE
T ss_pred             CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE-----EEEEcCCCcE
Confidence              6789999999999999999999999999999999998888744555799997765    4544     7899999999


Q ss_pred             EEEEccCceEeeeeec--------------------------cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeec
Q 022184          227 AVYDISTWNKIGHKRL--------------------------LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (301)
Q Consensus       227 ~~~d~~~~~~~~~~~~--------------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~  280 (301)
                      ++||+++++.+..+..                          |...|++++|+ ++++|++++.|+.|++||+.+++...
T Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence            9999999887666553                          33458889999 77999999999999999999887665


Q ss_pred             cccc------------------------------------cccCccEEEEEEccC
Q 022184          281 WSKR------------------------------------LHLGTSIALVEFCPT  299 (301)
Q Consensus       281 ~~~~------------------------------------~~~~~~v~~~~~spd  299 (301)
                      .+..                                    .| ...|++++|+++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~i~~~~~  418 (437)
T 3gre_A          365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH-HDIINSISTCEV  418 (437)
T ss_dssp             EEECC--CCCEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEES
T ss_pred             EEecccccCceEEEEEeecceEEEEEecccccccccCccccc-ccceeeEeeecc
Confidence            5432                                    17 788999999987

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.2e-39  Score=261.97  Aligned_cols=275  Identities=14%  Similarity=0.168  Sum_probs=214.6

Q ss_pred             CCceeEEEeeeecCCC-ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC----CCe
Q 022184            3 GGGTVTCGSWIKRPEN-VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----GDD   77 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~-~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~   77 (301)
                      ...+|++++|+|+... ...+++++      .++.+++|++........   ........|...|.+++|+|+    +++
T Consensus        17 h~~~v~~i~~~p~~~~~~~~~~~~~------~~~~v~vw~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~   87 (366)
T 3k26_A           17 HNQPLFGVQFNWHSKEGDPLVFATV------GSNRVTLYECHSQGEIRL---LQSYVDADADENFYTCAWTYDSNTSHPL   87 (366)
T ss_dssp             TCSCEEEEEECTTCCTTSCEEEEEE------ETTEEEEEEECGGGCEEE---EEEEECSCTTCCEEEEEEEECTTTCCEE
T ss_pred             CCCceEEEEEecccCCCCceEEEEC------CCCEEEEEEcCCCcEEEe---eeeccccCCCCcEEEEEeccCCCCCCCE
Confidence            4689999999975221 23333333      345689999875432111   111122347789999999998    669


Q ss_pred             EEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceeccc---ccC
Q 022184           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE---PKA  153 (301)
Q Consensus        78 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~  153 (301)
                      |++++.|+.|++||+.+++....+       ..|...|.+++|+| ++++|++++.||.|++||+++++....+   ..|
T Consensus        88 l~~~~~dg~i~v~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  160 (366)
T 3k26_A           88 LAVAGSRGIIRIINPITMQCIKHY-------VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH  160 (366)
T ss_dssp             EEEEETTCEEEEECTTTCCEEEEE-------ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred             EEEecCCCEEEEEEchhceEeeee-------cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence            999999999999999877653222       13778999999999 9999999999999999999998887766   578


Q ss_pred             CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee---------------------------cCCCCeeEEEEc
Q 022184          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---------------------------NSDEKIELCRFS  206 (301)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------------------------~~~~~v~~~~~~  206 (301)
                      ...|.+++|+|++++|++++.|+.|++||+++++....+..                           .+...|.+++|+
T Consensus       161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (366)
T 3k26_A          161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL  240 (366)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred             cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence            88999999999999999999999999999987654322211                           145579999999


Q ss_pred             cCCCcceEEEEEEeCCcceEEEEEccCceE--------------eeeeeccCCCcEEEEEcCC--CCEEEEeeCCCcEEE
Q 022184          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNK--------------IGHKRLLRKPASVLSISLD--GKYLAMGSKDGDICV  270 (301)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------------~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i  270 (301)
                        ++.     +++++.|+.|++||+++.+.              +..+..|...+.+++|+|+  +++|++++.||.|++
T Consensus       241 --~~~-----l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~v  313 (366)
T 3k26_A          241 --GDL-----ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYV  313 (366)
T ss_dssp             --TTE-----EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEE
T ss_pred             --CCE-----EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEE
Confidence              555     78899999999999987643              6677778889999999999  999999999999999


Q ss_pred             EeCCCceeec----ccccccc-CccEEEEEEccCCC
Q 022184          271 VDVKKMEINH----WSKRLHL-GTSIALVEFCPTQR  301 (301)
Q Consensus       271 ~~~~~~~~~~----~~~~~~~-~~~v~~~~~spdg~  301 (301)
                      ||+.+++...    .+ ..|. ...|++++|+|||+
T Consensus       314 wd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~  348 (366)
T 3k26_A          314 WDLEVEDPHKAKCTTL-THHKCGAAIRQTSFSRDSS  348 (366)
T ss_dssp             EECCSSSGGGCEEEEE-CCTTCCSCEEEEEECTTSS
T ss_pred             EECCCCCCccccceEE-cccccCCceEEEEeCCCCC
Confidence            9999876433    22 2221 58899999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-38  Score=262.58  Aligned_cols=271  Identities=13%  Similarity=0.117  Sum_probs=217.5

Q ss_pred             CceeEEEeeeecCCCcc-EEEecCCccccCCcCceeEeee----CCCcceee--eCCceecc------ccccCCcceEEE
Q 022184            4 GGTVTCGSWIKRPENVN-LVVLGKSSRASSSPSVLEIFSF----DPKTTSVY--TSPLVTYV------FDESEGDPMTIA   70 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~-~~~~g~~~~~~~~~~~~~i~~~----~~~~~~~~--~~~~~~~~------~~~h~~~v~~~~   70 (301)
                      ..+|+|++|+|+   +. ++|+|+      .++.+++|++    ......+.  ........      ..+|.+.|.+++
T Consensus        45 ~~~v~~~~~s~~---~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (425)
T 1r5m_A           45 LDNIVSSTWNPL---DESILAYGE------KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA  115 (425)
T ss_dssp             CSCCSEEEECSS---CTTEEEEEE------TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred             cCceEEEEECCC---CCcEEEEec------CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence            368999999988   55 888866      6778899999    54331000  00011111      223688999999


Q ss_pred             ECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc
Q 022184           71 VNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (301)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  150 (301)
                      |+|++++|++++.|+.|++|+ .+++....       ...|...|.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus       116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  187 (425)
T 1r5m_A          116 WSHDGNSIVTGVENGELRLWN-KTGALLNV-------LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF  187 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEE-TTSCEEEE-------ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEe-CCCCeeee-------ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence            999999999999999999999 33332111       1236789999999999999999999999999999998887777


Q ss_pred             ccCCcc---------------EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          151 PKAHKS---------------VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       151 ~~~~~~---------------i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      ..+...               +.+++|+|++ .+++++.|+.|++||+++++.+..+..+ ...+.+++|+|+++.    
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~----  261 (425)
T 1r5m_A          188 ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGH-HGPISVLEFNDTNKL----  261 (425)
T ss_dssp             CCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCC-SSCEEEEEEETTTTE----
T ss_pred             eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccC-CCceEEEEECCCCCE----
Confidence            666555               8999999975 5888999999999999999888887755 457999999999997    


Q ss_pred             EEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEE
Q 022184          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~  295 (301)
                       +++++.|+.|++||+++++.+..+..|...+.+++|+|++ ++++++.|+.|++||+++++.+..+ ..| ...|.+++
T Consensus       262 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-~~~-~~~i~~~~  337 (425)
T 1r5m_A          262 -LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS-IVD-GVPIFAGR  337 (425)
T ss_dssp             -EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE-ECT-TCCEEEEE
T ss_pred             -EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec-ccC-CccEEEEE
Confidence             6888899999999999998888888899999999999999 9999999999999999999988776 567 88999999


Q ss_pred             EccCCC
Q 022184          296 FCPTQR  301 (301)
Q Consensus       296 ~spdg~  301 (301)
                      |+|+|+
T Consensus       338 ~s~~~~  343 (425)
T 1r5m_A          338 ISQDGQ  343 (425)
T ss_dssp             ECTTSS
T ss_pred             EcCCCC
Confidence            999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-39  Score=265.83  Aligned_cols=230  Identities=12%  Similarity=0.042  Sum_probs=186.8

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEE
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  138 (301)
                      +..|.++|.+++|+|++++|++++.|+.|++|++.++....     ......|...|.+++|+|++++|++++.|+.|++
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v   81 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH-----ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV   81 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEE-----CCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEE-----EEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            34467899999999999999999999999999998763100     1222247789999999999999999999999999


Q ss_pred             EeCCCcc---eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce---EEEEeecCCCCeeEEEEccCCCcc
Q 022184          139 MHWPSLR---IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGTKP  212 (301)
Q Consensus       139 ~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~  212 (301)
                      ||+.+++   ....+..|...|.+++|+|++++|++++.|+.|++||+++++.   ...+...+...|.+++|+|+++. 
T Consensus        82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-  160 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL-  160 (377)
T ss_dssp             C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE-
T ss_pred             EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE-
Confidence            9998877   5556677888999999999999999999999999999998873   56666645668999999999987 


Q ss_pred             eEEEEEEeCCcceEEEEEcc------------------CceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          213 FLFCTVQRGDKALLAVYDIS------------------TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       213 ~~~~~~~~~~~~~i~~~d~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                          +++++.|+.|++||++                  .++.+..+ .|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       161 ----l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          161 ----LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             ----EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             ----EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence                7889999999999985                  34455556 788899999999999999999999999999999


Q ss_pred             Ccee----eccccccccCccEEEEEEccCCC
Q 022184          275 KMEI----NHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       275 ~~~~----~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +++.    +..+ ..| ..+|.+++|+|||+
T Consensus       236 ~~~~~~~~~~~~-~~~-~~~v~~~~~s~~~~  264 (377)
T 3dwl_C          236 APEQPPRALITV-KLS-QLPLRSLLWANESA  264 (377)
T ss_dssp             STTSCEEECCCE-ECS-SSCEEEEEEEETTE
T ss_pred             CCCCcceeeEee-cCC-CCceEEEEEcCCCC
Confidence            9876    5555 577 88999999999984

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.7e-37  Score=247.30  Aligned_cols=215  Identities=18%  Similarity=0.261  Sum_probs=191.4

Q ss_pred             eeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ....+.+|.+.|.+++|+|++++|++++.|+.|++|++.+++....+       ..|...|.+++|+|++++|++++.|+
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s~~~d~   87 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-------SGHKLGISDVAWSSDSNLLVSASDDK   87 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-------ccCCCceEEEEEcCCCCEEEEECCCC
Confidence            35568899999999999999999999999999999999876542221       24678899999999999999999999


Q ss_pred             eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      .|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+ ..++.+++|+|+++.   
T Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~---  163 (312)
T 4ery_A           88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSL---  163 (312)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSE---
T ss_pred             EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC-CCcEEEEEEcCCCCE---
Confidence            9999999999988888889899999999999999999999999999999999988888765 457999999999997   


Q ss_pred             EEEEEeCCcceEEEEEccCceEeeeee-ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          215 FCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                        +++++.|+.|++||+++++.+..+. .+...+..++|+|++++|++++.|+.|++||+++++.+..+
T Consensus       164 --l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  230 (312)
T 4ery_A          164 --IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY  230 (312)
T ss_dssp             --EEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred             --EEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence              7889999999999999988776553 44567999999999999999999999999999999877665

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.3e-38  Score=263.62  Aligned_cols=262  Identities=14%  Similarity=0.114  Sum_probs=210.7

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      +++++|+|+   +.++++|+      .++.+++|+......        ...+..| ..+....|+|++++|++++.|+.
T Consensus        59 ~~~~~~s~~---g~~l~~~~------~d~~v~i~d~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~  120 (420)
T 3vl1_A           59 GKGNTFEKV---GSHLYKAR------LDGHDFLFNTIIRDG--------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGD  120 (420)
T ss_dssp             CTTCEEEEE---ETTEEEEE------ETTEEEEEECCSEET--------TTTSCSC-CEEEEEEECSSSCEEEEEETTSC
T ss_pred             ccceeeeec---CCeEEEEE------cCCcEEEEEecccce--------eeEEecC-CceEEEEEecCCCEEEEEECCCC
Confidence            457899988   66777765      567788988754321        1233444 44555678999999999999999


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCC
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS  166 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  166 (301)
                      |++||+.+++....       ...|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++
T Consensus       121 i~iwd~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  193 (420)
T 3vl1_A          121 IKVLDSNFNLQREI-------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG  193 (420)
T ss_dssp             EEEECTTSCEEEEE-------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT
T ss_pred             EEEEeCCCcceeee-------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC
Confidence            99999886654211       12477899999999999999999999999999999998888888899999999999999


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEeec--CC---------------------CCeeEEEEccCCCcceEEEEEEeCCc
Q 022184          167 EFLATTSTDGSARIWKTEDGVAWTFLTRN--SD---------------------EKIELCRFSKDGTKPFLFCTVQRGDK  223 (301)
Q Consensus       167 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~---------------------~~v~~~~~~~~~~~~~~~~~~~~~~~  223 (301)
                      ++|++++.|+.|++||+++++.+..+..+  +.                     ..+.+++|+|+++.     +++++.|
T Consensus       194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~d  268 (420)
T 3vl1_A          194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-----VIAGHVS  268 (420)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE-----EEEEETT
T ss_pred             CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE-----EEEEcCC
Confidence            99999999999999999999988888643  12                     23444556788876     7889999


Q ss_pred             ceEEEEEccCceEeeeee-ccCCCcEEEEEcCCCC-EEEEeeCCCcEEEEeCCCcee-eccccccccCccEEEEEEccCC
Q 022184          224 ALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      +.|++||+++++.+..+. .|...+.+++|+|+++ +|++++.||.|++||+++++. +..+...| ...|.++.|. +|
T Consensus       269 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~-~~  346 (420)
T 3vl1_A          269 GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYFA-AG  346 (420)
T ss_dssp             SCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEEE-TT
T ss_pred             CeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEeC-CC
Confidence            999999999988765554 4678999999999998 999999999999999998754 44443335 7889888664 44

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.9e-37  Score=250.14  Aligned_cols=261  Identities=14%  Similarity=0.100  Sum_probs=209.0

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--CCCeEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~   80 (301)
                      ...+|+|++|+|+   +.++++|+      .++.+++|+++......    .....+.+|...|.+++|+|  ++++|++
T Consensus        10 H~~~v~~~~~~~~---~~~l~~~~------~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~d~~~l~s   76 (351)
T 3f3f_A           10 HDDLVHDVVYDFY---GRHVATCS------SDQHIKVFKLDKDTSNW----ELSDSWRAHDSSIVAIDWASPEYGRIIAS   76 (351)
T ss_dssp             CSSCEEEEEECSS---SSEEEEEE------TTSEEEEEEECSSSCCE----EEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred             cccceeEEEEcCC---CCEEEEee------CCCeEEEEECCCCCCcc----eecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence            4688999999987   66888865      67788999998654322    12445778999999999999  6999999


Q ss_pred             EecCCcEEEEEEcCCcccccc--ccccCCCCCCCCCeeEEEEeeC--CCEEEEeecCCeEEEEeCCCcceecccc-----
Q 022184           81 STTNGGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEP-----  151 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----  151 (301)
                      ++.|+.|++||+..+......  .........|...|.+++|+|+  +++|++++.||.|++||+++++.+..+.     
T Consensus        77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  156 (351)
T 3f3f_A           77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM  156 (351)
T ss_dssp             EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred             EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence            999999999999876432100  0001112246789999999999  9999999999999999998877554332     


Q ss_pred             --------cCCccEEEEEecCC---CcEEEEEeCCCcEEEEeCCCCce--EEEEeecCCCCeeEEEEccCC----CcceE
Q 022184          152 --------KAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDG----TKPFL  214 (301)
Q Consensus       152 --------~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~~~~  214 (301)
                              .+...+.+++|+|+   +.++++++.|+.+.+|+...++.  +..+.. +...|.+++|+|++    +.   
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~p~~~~~~~~---  232 (351)
T 3f3f_A          157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-HKSLIRSISWAPSIGRWYQL---  232 (351)
T ss_dssp             ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-CCSCEEEEEECCCSSCSSEE---
T ss_pred             cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC-CCcceeEEEECCCCCCcceE---
Confidence                    45568999999997   89999999999998888877765  334443 45579999999998    44   


Q ss_pred             EEEEEeCCcceEEEEEccCc----------------------------------------------eEeeeeeccCCCcE
Q 022184          215 FCTVQRGDKALLAVYDISTW----------------------------------------------NKIGHKRLLRKPAS  248 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~----------------------------------------------~~~~~~~~~~~~v~  248 (301)
                        +++++.|+.|++||++++                                              +.+..+..|...|+
T Consensus       233 --l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  310 (351)
T 3f3f_A          233 --IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW  310 (351)
T ss_dssp             --EEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE
T ss_pred             --EEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE
Confidence              688999999999999874                                              45666778889999


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          249 VLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       249 ~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      +++|+|++++|++++.||.|++|++.+++....+
T Consensus       311 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          311 SVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             EEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            9999999999999999999999999987655443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.5e-37  Score=251.59  Aligned_cols=251  Identities=14%  Similarity=0.107  Sum_probs=191.7

Q ss_pred             eeEEEeeeecCCCccEEEecCCccc-----cCCcCceeEeeeCCCcceeeeCCc-eeccccccCCcceEEEECCCCCeEE
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRA-----SSSPSVLEIFSFDPKTTSVYTSPL-VTYVFDESEGDPMTIAVNPSGDDFV   79 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~   79 (301)
                      .|+|++|..+     .++.|.....     .+.++.+++|.++.....+..... .......+...+.+++|+|||++++
T Consensus        75 ~v~s~~~~~~-----~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la  149 (365)
T 4h5i_A           75 SPTAIDASKG-----IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA  149 (365)
T ss_dssp             CCCEEEEETT-----EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred             ceEEEEeCCC-----EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE
Confidence            4667766533     6666544321     246788999999876544422111 1122344566799999999999987


Q ss_pred             EEe--cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec--ccccCCc
Q 022184           80 CST--TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--DEPKAHK  155 (301)
Q Consensus        80 ~~~--~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~  155 (301)
                      +++  .|++|++||+++.+...        .+.|...|.+++|+|||+++++++.+ .+++|+..+++.+.  ....|..
T Consensus       150 ~as~~~d~~i~iwd~~~~~~~~--------~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~  220 (365)
T 4h5i_A          150 IASSKVPAIMRIIDPSDLTEKF--------EIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNW  220 (365)
T ss_dssp             EEESCSSCEEEEEETTTTEEEE--------EEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTE
T ss_pred             EEECCCCCEEEEeECCCCcEEE--------EeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCC
Confidence            654  68999999998876522        22466789999999999999999855 56667666666543  2345667


Q ss_pred             cEEEEEecCCCcEEEEEeCCC----cEEEEeCCCCceE----EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184          156 SVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAW----TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (301)
                      .|.+++|+|+++++++++.|+    .+++|++......    ..+.. +...|++++|+|+|++     +++++.|+.|+
T Consensus       221 ~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spdg~~-----lasgs~D~~V~  294 (365)
T 4h5i_A          221 SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMKGEL-----AVLASNDNSIA  294 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTTSCE-----EEEEETTSCEE
T ss_pred             CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCCCCc-----eEEEcCCCEEE
Confidence            899999999999999999887    5888998776542    23333 4457999999999997     78999999999


Q ss_pred             EEEccCceEeeee-eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          228 VYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       228 ~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      |||+++++++..+ .+|...|++++|+|||++|++++.|++|+||++...
T Consensus       295 iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          295 LVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999988764 689999999999999999999999999999999643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-36  Score=244.58  Aligned_cols=238  Identities=20%  Similarity=0.246  Sum_probs=204.3

Q ss_pred             eccccccCCcceEEEECCC-CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           56 TYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ..+|+||.+.|++++|+|+ +++|++|+.|++|++||+...+........  ....|...|.+++|+|++++|++++.|+
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~--~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR--ALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE--EECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE--EEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            4568999999999999997 679999999999999999876543222211  1124778999999999999999999999


Q ss_pred             eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      .|++|+............+...+..+.+++++++|++++.|+.+++||+............+...+..++|++++...+ 
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-  187 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI-  187 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE-
T ss_pred             cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE-
Confidence            9999999988877777777788999999999999999999999999999877665555445566799999999886543 


Q ss_pred             EEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEE
Q 022184          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV  294 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~  294 (301)
                        +++++.|+.|++||+++++.+..+..|...|++++|+|++++|++++.|+.|++||+++.+.+..+.  + ...|.++
T Consensus       188 --~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~-~~~v~~~  262 (340)
T 4aow_A          188 --IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--G-GDIINAL  262 (340)
T ss_dssp             --EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--C-SSCEEEE
T ss_pred             --EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--C-CceEEee
Confidence              4778899999999999999998999999999999999999999999999999999999999887763  3 5689999


Q ss_pred             EEccCCC
Q 022184          295 EFCPTQR  301 (301)
Q Consensus       295 ~~spdg~  301 (301)
                      +|+|++.
T Consensus       263 ~~~~~~~  269 (340)
T 4aow_A          263 CFSPNRY  269 (340)
T ss_dssp             EECSSSS
T ss_pred             ecCCCCc
Confidence            9999863

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-37  Score=250.19  Aligned_cols=248  Identities=11%  Similarity=0.114  Sum_probs=201.6

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC--CCeEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~   80 (301)
                      ...+|+|++|+|+   +.++++|+      .++.+++|+++......      ...+.+|.+.|.+++|+|+  +++|++
T Consensus        10 h~~~v~~~~~s~~---~~~l~~~~------~dg~i~iw~~~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~l~s   74 (379)
T 3jrp_A           10 HNELIHDAVLDYY---GKRLATCS------SDKTIKIFEVEGETHKL------IDTLTGHEGPVWRVDWAHPKFGTILAS   74 (379)
T ss_dssp             CCCCEEEEEECSS---SSEEEEEE------TTSCEEEEEEETTEEEE------EEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CcccEEEEEEcCC---CCEEEEEE------CCCcEEEEecCCCccee------eeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence            4678999999988   66888765      57788999987544322      3457889999999999987  899999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC--CCEEEEeecCCeEEEEeCCCcce--ecccccCCcc
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKS  156 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~  156 (301)
                      ++.|+.|++||+.+++....     .....|...|.+++|+|+  +++|++++.|+.|++||+++...  ...+..|...
T Consensus        75 ~~~dg~v~iwd~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  149 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGRWSQI-----AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  149 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEE-----EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred             eccCCEEEEEEcCCCceeEe-----eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence            99999999999998752111     111236789999999998  99999999999999999987743  3345577789


Q ss_pred             EEEEEecC-------------CCcEEEEEeCCCcEEEEeCCCCceE----EEEeecCCCCeeEEEEccC---CCcceEEE
Q 022184          157 VLDMDFSL-------------DSEFLATTSTDGSARIWKTEDGVAW----TFLTRNSDEKIELCRFSKD---GTKPFLFC  216 (301)
Q Consensus       157 i~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~---~~~~~~~~  216 (301)
                      |.+++|+|             ++++|++++.|+.|++||++++...    ..+.. +...|.+++|+|+   +..     
T Consensus       150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~-----  223 (379)
T 3jrp_A          150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSY-----  223 (379)
T ss_dssp             EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-CSSCEEEEEECCCCSSSEE-----
T ss_pred             eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec-ccCcEeEEEECCCCCCCCe-----
Confidence            99999999             6999999999999999999876533    33443 4557999999999   665     


Q ss_pred             EEEeCCcceEEEEEccCce-----EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          217 TVQRGDKALLAVYDISTWN-----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       217 ~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      +++++.|+.|++||+++++     .+.....+...+.+++|+|++++|++++.||.|++|++...
T Consensus       224 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          224 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             EEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            7889999999999998863     22233447788999999999999999999999999999743

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-36  Score=252.06  Aligned_cols=261  Identities=13%  Similarity=0.155  Sum_probs=201.5

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|++++|+|+   +.++++|+      .++.+++|+.....        ....+.+|...|.+++|  ++++|++++
T Consensus       133 ~~~~v~~v~~s~~---~~~l~~~~------~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~--~~~~l~~~~  193 (401)
T 4aez_A          133 ESTYVASVKWSHD---GSFLSVGL------GNGLVDIYDVESQT--------KLRTMAGHQARVGCLSW--NRHVLSSGS  193 (401)
T ss_dssp             TTCCEEEEEECTT---SSEEEEEE------TTSCEEEEETTTCC--------EEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred             CCCCEEEEEECCC---CCEEEEEC------CCCeEEEEECcCCe--------EEEEecCCCCceEEEEE--CCCEEEEEc
Confidence            4678999999987   66888866      56778999876432        13346789999999999  567999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.|++||+.........      ...|...|.+++|+|++++|++++.|+.|++||+++++....+..|...|.+++|
T Consensus       194 ~dg~i~i~d~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~  267 (401)
T 4aez_A          194 RSGAIHHHDVRIANHQIGT------LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW  267 (401)
T ss_dssp             TTSEEEEEETTSSSCEEEE------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEE
T ss_pred             CCCCEEEEecccCcceeeE------EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEE
Confidence            9999999999854332211      1236789999999999999999999999999999999888888888899999999


Q ss_pred             cCCCc-EEEEEe--CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEE--eCCcceEEEEEccCceEe
Q 022184          163 SLDSE-FLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ--RGDKALLAVYDISTWNKI  237 (301)
Q Consensus       163 ~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~  237 (301)
                      +|++. ++++++  .|+.|++||+++++.+..+..  ...+.+++|+|+++.     +++  +..|+.|++||+.+++..
T Consensus       268 ~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~-----l~~~~g~~dg~i~v~~~~~~~~~  340 (401)
T 4aez_A          268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA--GSQVTSLIWSPHSKE-----IMSTHGFPDNNLSIWSYSSSGLT  340 (401)
T ss_dssp             CTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSE-----EEEEECTTTCEEEEEEEETTEEE
T ss_pred             CCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC--CCcEEEEEECCCCCe-----EEEEeecCCCcEEEEecCCccce
Confidence            99775 556654  799999999999999888863  346999999999997     344  668999999999986554


Q ss_pred             --eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEE
Q 022184          238 --GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       238 --~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~  296 (301)
                        ..+..|...|.+++|+|++++|++++.||.|++|++.+++.+......+ ..+...+.|
T Consensus       341 ~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~i~~  400 (401)
T 4aez_A          341 KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPIT-KTPSSSITI  400 (401)
T ss_dssp             EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---------------------
T ss_pred             eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccccccc-CCCccceec
Confidence              3466788999999999999999999999999999999988776553333 444554443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.4e-36  Score=246.70  Aligned_cols=273  Identities=11%  Similarity=0.060  Sum_probs=216.2

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|+|+..++.++++|+      .++.+++|+++......      ...+.+|...|.+++|+|++++|++++
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~------~dg~i~iw~~~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGS------WANDVRCWEVQDSGQTI------PKAQQMHTGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEE------TTSEEEEEEECTTSCEE------EEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEEcCCCCCceEEEEEC------CCCcEEEEEcCCCCcee------EEEeccccCCEEEEEECcCCCEEEEEc
Confidence            468899999997732246888866      67788999997644322      245678999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEE--eeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF--SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  160 (301)
                      .|+.|++||+.+++...        ...|...|.+++|  +|++++|++++.||.|++||+++++.+..+..+ ..+.++
T Consensus       106 ~dg~v~iwd~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~  176 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQAIQ--------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCA  176 (368)
T ss_dssp             TTSEEEEEETTTTEEEE--------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEEE
T ss_pred             CCCcEEEEEcCCCCcee--------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceEE
Confidence            99999999998776421        2347789999999  889999999999999999999998877666544 466677


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCCceEEEE-eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc---eE
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---NK  236 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~  236 (301)
                      .+.+  ..+++++.++.+++|+++........ .........++.+.++..... ..+++++.|+.|++||++..   ..
T Consensus       177 ~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~i~~~~~~~~~~~  253 (368)
T 3mmy_A          177 DVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP-TGFALGSIEGRVAIHYINPPNPAKD  253 (368)
T ss_dssp             EEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE-EEEEEEETTSEEEEEESSCSCHHHH
T ss_pred             EecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC-CeEEEecCCCcEEEEecCCCCcccc
Confidence            6664  47888899999999999876554333 223334566777766654311 11578899999999999876   33


Q ss_pred             eeeeeccCC------------CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          237 IGHKRLLRK------------PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       237 ~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +..+..|..            .|.+++|+|++++|++++.||.|++||+.+++.+..+ ..| ..+|++++|+|||+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~-~~~v~~~~~s~~g~  328 (368)
T 3mmy_A          254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS-EQL-DQPISACCFNHNGN  328 (368)
T ss_dssp             SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-CCC-SSCEEEEEECTTSS
T ss_pred             ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe-cCC-CCCceEEEECCCCC
Confidence            445555554            7999999999999999999999999999999988877 578 89999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-36  Score=251.43  Aligned_cols=260  Identities=15%  Similarity=0.133  Sum_probs=208.1

Q ss_pred             CCceeEEEeeeec----CCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccccc-----CCcceEEEEC-
Q 022184            3 GGGTVTCGSWIKR----PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-----EGDPMTIAVN-   72 (301)
Q Consensus         3 ~~~~v~~~~w~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~-   72 (301)
                      ...+|++++|+++    .....++++|+      .++.+++|++......   .......+..|     ...|.+++|+ 
T Consensus        61 h~~~v~~~~~~~~~~~~g~~~~~l~s~~------~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (397)
T 1sq9_A           61 HKSGLHHVDVLQAIERDAFELCLVATTS------FSGDLLFYRITREDET---KKVIFEKLDLLDSDMKKHSFWALKWGA  131 (397)
T ss_dssp             CTTCEEEEEEEEEEETTTEEEEEEEEEE------TTSCEEEEEEEECTTT---CCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred             CCCcEEEEEEecccccCCccccEEEEEc------CCCCEEEEEccCCccc---ccccceeecccccccCCCcEEEEEEee
Confidence            4578999999987    21115777755      5778899998654421   00112345667     5899999999 


Q ss_pred             ---CCCCe-EEEEecCCcEEEEEEcC------Ccccc-----ccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEE
Q 022184           73 ---PSGDD-FVCSTTNGGCKLFEVYG------GATDI-----NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (301)
Q Consensus        73 ---~~~~~-l~~~~~d~~i~~w~~~~------~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (301)
                         |++++ |++++.|+.|++||+..      .+...     .+.........|...+.+++|+|++ +|++++.|+.|+
T Consensus       132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~  210 (397)
T 1sq9_A          132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQ  210 (397)
T ss_dssp             CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEE
T ss_pred             ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEE
Confidence               99999 99999999999999988      44322     1111000112367889999999999 999999999999


Q ss_pred             EEeCCCcceeccccc---C---CccEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceEEEEeec------------C
Q 022184          138 IMHWPSLRIILDEPK---A---HKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRN------------S  196 (301)
Q Consensus       138 v~d~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~------------~  196 (301)
                      +||+++++.+..+..   |   ...|.+++|+|++++|++++.|   +.|++||+++++.+..+...            +
T Consensus       211 i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (397)
T 1sq9_A          211 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH  290 (397)
T ss_dssp             EEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred             EEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc
Confidence            999999988888877   7   8899999999999999999999   99999999999998888761            3


Q ss_pred             CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee------cc---------------CCCcEEEEEcCC
Q 022184          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR------LL---------------RKPASVLSISLD  255 (301)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~------~~---------------~~~v~~~~~s~~  255 (301)
                      ...+.+++|+|++++     +++++.|+.|++||+++++.+..+.      .|               ...|.+++|+|+
T Consensus       291 ~~~v~~~~~~~~~~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~  365 (397)
T 1sq9_A          291 SSWVMSLSFNDSGET-----LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK  365 (397)
T ss_dssp             SSCEEEEEECSSSSE-----EEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred             CCcEEEEEECCCCCE-----EEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence            457999999999997     7888999999999999999988888      77               899999999999


Q ss_pred             C----------CEEEEeeCCCcEEEEeCCCce
Q 022184          256 G----------KYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       256 ~----------~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      +          ++|++++.||.|++|++++++
T Consensus       366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          366 GWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            8          799999999999999998763

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.3e-37  Score=270.72  Aligned_cols=237  Identities=19%  Similarity=0.203  Sum_probs=200.6

Q ss_pred             ccccccCCcceEEEECCCC-CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           57 YVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      ..+.+|.+.|++++|+|++ ++|++++.|++|++|++...........  .....|...|.+++|+|++++|++|+.|+.
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~--~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQ--RRLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEE--EEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccc--ceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            4578999999999999865 6899999999999999976543211111  112347789999999999999999999999


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--ecCCCCeeEEEEccCCCcce
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPF  213 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~  213 (301)
                      |++||+.+++....+..|...|.+++|+|++++|++++.|++|++||+..........  ..|...|.+++|+|++....
T Consensus       454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  533 (694)
T 3dm0_A          454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT  533 (694)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred             EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence            9999999999888888999999999999999999999999999999987554333222  13445699999999974322


Q ss_pred             EEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE
Q 022184          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (301)
Q Consensus       214 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~  293 (301)
                         +++++.|+.|++||+++.+....+..|...|++++|+|++++|++++.|+.|++||+.+++.+..+.  + ...|.+
T Consensus       534 ---l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~-~~~v~~  607 (694)
T 3dm0_A          534 ---IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--A-NSVIHA  607 (694)
T ss_dssp             ---EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB--C-SSCEEE
T ss_pred             ---EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec--C-CCcEEE
Confidence               6889999999999999999888899999999999999999999999999999999999999887653  3 568999


Q ss_pred             EEEccCCC
Q 022184          294 VEFCPTQR  301 (301)
Q Consensus       294 ~~~spdg~  301 (301)
                      ++|+|+++
T Consensus       608 ~~~sp~~~  615 (694)
T 3dm0_A          608 LCFSPNRY  615 (694)
T ss_dssp             EEECSSSS
T ss_pred             EEEcCCCc
Confidence            99999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-36  Score=253.59  Aligned_cols=227  Identities=9%  Similarity=0.043  Sum_probs=188.4

Q ss_pred             cccCCcceEEEECCCCCeE-EEEecCCcEEEEEEc--CCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeE
Q 022184           60 DESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (301)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~~w~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (301)
                      .+|.+.|.+++|+|++++| ++++.|+.|++|++.  +++....+..     ..+...|.+++|+|++++|++++.+|.+
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~~g~v  173 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-----FCFSKRPNAISIAEDDTTVIIADKFGDV  173 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-----EECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-----ccCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence            3566789999999999996 888899999999998  5544222211     1355789999999999999999999999


Q ss_pred             EEEeCCCcceec----ccccCCccEEEEEecCC---CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCC
Q 022184          137 RIMHWPSLRIIL----DEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (301)
Q Consensus       137 ~v~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (301)
                      ++|++.+++...    .+..|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+...+...|.+++|+ ++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~  252 (450)
T 2vdu_B          174 YSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KD  252 (450)
T ss_dssp             EEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-ST
T ss_pred             EEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CC
Confidence            999998876543    66678889999999999   99999999999999999999998887654556689999999 99


Q ss_pred             CcceEEEEEEeCCcceEEEEEccCceEeeeeec-------------------------cCCCcEEEEEcCCCCEEEEee-
Q 022184          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-------------------------LRKPASVLSISLDGKYLAMGS-  263 (301)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------------------~~~~v~~~~~s~~~~~l~~~~-  263 (301)
                      ++     +++++.|+.|++||+++++.+..+..                         ....+..++|+|++++|++++ 
T Consensus       253 ~~-----l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~  327 (450)
T 2vdu_B          253 YL-----LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE  327 (450)
T ss_dssp             TE-----EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred             CE-----EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence            87     78889999999999999987766652                         235689999999999999998 


Q ss_pred             CCCcEEEEeC--CCc---eeeccccccccCccEEEEEEccCC
Q 022184          264 KDGDICVVDV--KKM---EINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       264 ~d~~i~i~~~--~~~---~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      .|+.|++|++  .++   +.+..+ ..+  ..|.+++|+|++
T Consensus       328 ~d~~i~iw~~~~~~~~~l~~~~~~-~~~--~~v~~~~~~~~~  366 (450)
T 2vdu_B          328 ATKCIIILEMSEKQKGDLALKQII-TFP--YNVISLSAHNDE  366 (450)
T ss_dssp             TCSEEEEEEECSSSTTCEEEEEEE-ECS--SCEEEEEEETTE
T ss_pred             CCCeEEEEEeccCCCCceeeccEe-ccC--CceEEEEecCCc
Confidence            8999999999  554   444444 333  689999999963

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-36  Score=250.09  Aligned_cols=246  Identities=12%  Similarity=0.140  Sum_probs=202.5

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  112 (301)
                      .++.+++|+.+......       .....|...|.+++|+|++++|++++.||.|++||+.+++....+       ..|.
T Consensus       111 ~d~~v~lw~~~~~~~~~-------~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~  176 (401)
T 4aez_A          111 LERNVYVWNADSGSVSA-------LAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-------AGHQ  176 (401)
T ss_dssp             ETTEEEEEETTTCCEEE-------EEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-------CCCS
T ss_pred             CCCeEEEeeCCCCcEeE-------eeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-------cCCC
Confidence            56778999886543211       112238899999999999999999999999999999877643222       1477


Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCC-CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  191 (301)
                      ..|.+++|  ++++|++++.||.|++||++ .......+..|...|.+++|+|++++|++++.|+.|++||+++++....
T Consensus       177 ~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  254 (401)
T 4aez_A          177 ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT  254 (401)
T ss_dssp             SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE
T ss_pred             CceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE
Confidence            89999999  56799999999999999998 4555667778889999999999999999999999999999999998888


Q ss_pred             EeecCCCCeeEEEEccCCCcceEEEEEEe--CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEe--eCCCc
Q 022184          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG--SKDGD  267 (301)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~~  267 (301)
                      +..+ ...+.+++|+|++..+    ++++  +.|+.|++||+++++.+..+. +...+.+++|+|++++++++  +.||.
T Consensus       255 ~~~~-~~~v~~~~~~p~~~~l----l~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~  328 (401)
T 4aez_A          255 KTNH-NAAVKAVAWCPWQSNL----LATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNN  328 (401)
T ss_dssp             ECCC-SSCCCEEEECTTSTTE----EEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCE
T ss_pred             ecCC-cceEEEEEECCCCCCE----EEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCc
Confidence            8755 4579999999998863    3443  379999999999998887665 56789999999999999994  48999


Q ss_pred             EEEEeCCCceeeccc-cccccCccEEEEEEccCCC
Q 022184          268 ICVVDVKKMEINHWS-KRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       268 i~i~~~~~~~~~~~~-~~~~~~~~v~~~~~spdg~  301 (301)
                      |++|++.+++..... ...| ...|.+++|+|||+
T Consensus       329 i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~  362 (401)
T 4aez_A          329 LSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGR  362 (401)
T ss_dssp             EEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSS
T ss_pred             EEEEecCCccceeEEEecCC-CCCEEEEEECCCCC
Confidence            999999987655442 2567 88999999999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-36  Score=247.70  Aligned_cols=233  Identities=13%  Similarity=0.123  Sum_probs=192.8

Q ss_pred             ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC--CCEEEEeecCC
Q 022184           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDG  134 (301)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg  134 (301)
                      ..+.+|.+.|.+++|+|++++|++++.|+.|++|++........     .....|...|.+++|+|+  +++|++++.||
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI-----DTLTGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE-----EEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee-----eEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            45789999999999999999999999999999999984432111     111247789999999987  99999999999


Q ss_pred             eEEEEeCCCcc--eecccccCCccEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCce--EEEEeecCCCCeeEEEEcc-
Q 022184          135 HLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSK-  207 (301)
Q Consensus       135 ~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~-  207 (301)
                      .|++||+.+++  ....+..|...|.+++|+|+  +++|++++.|+.|++||++.+..  ...+. .+...+.+++|+| 
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPA  158 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECCC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcCc
Confidence            99999999886  56667778889999999999  99999999999999999988743  33333 3455799999999 


Q ss_pred             ------------CCCcceEEEEEEeCCcceEEEEEccCce----EeeeeeccCCCcEEEEEcCC---CCEEEEeeCCCcE
Q 022184          208 ------------DGTKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLD---GKYLAMGSKDGDI  268 (301)
Q Consensus       208 ------------~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i  268 (301)
                                  ++..     +++++.|+.|++||++++.    ....+..|...|.+++|+|+   +++|++++.||.|
T Consensus       159 ~~~~~~~~~~~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i  233 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC  233 (379)
T ss_dssp             C----------CTTCE-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred             cccccccccCCCCCCE-----EEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence                        5776     7888999999999998654    44566778899999999999   8999999999999


Q ss_pred             EEEeCCCce----eeccccccccCccEEEEEEccCCC
Q 022184          269 CVVDVKKME----INHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       269 ~i~~~~~~~----~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++||+.+++    ........| ...|++++|+|||+
T Consensus       234 ~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~  269 (379)
T 3jrp_A          234 IIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGN  269 (379)
T ss_dssp             EEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSC
T ss_pred             EEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCC
Confidence            999999863    122222346 78999999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.3e-37  Score=251.76  Aligned_cols=247  Identities=13%  Similarity=0.115  Sum_probs=200.3

Q ss_pred             CCceeEEEeeeecCCC-ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEE
Q 022184            3 GGGTVTCGSWIKRPEN-VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~-~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~   80 (301)
                      ....|++++|+|+... +.++++|+      .++.+++|++....        ....+.+|...|.+++|+| ++++|++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~------~dg~i~v~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~l~s  133 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAG------SRGIIRIINPITMQ--------CIKHYVGHGNAINELKFHPRDPNLLLS  133 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEE------TTCEEEEECTTTCC--------EEEEEESCCSCEEEEEECSSCTTEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEec------CCCEEEEEEchhce--------EeeeecCCCCcEEEEEECCCCCCEEEE
Confidence            3477999999988543 45777765      66778998876432        1334678999999999999 9999999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc--------
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK--------  152 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------  152 (301)
                      ++.|+.|++||+.+++....+.    ....|...|.+++|+|++++|++++.||.|++||+++++....+..        
T Consensus       134 ~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  209 (366)
T 3k26_A          134 VSKDHALRLWNIQTDTLVAIFG----GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK  209 (366)
T ss_dssp             EETTSCEEEEETTTTEEEEEEC----STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGG
T ss_pred             EeCCCeEEEEEeecCeEEEEec----ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCC
Confidence            9999999999998776432221    1134778999999999999999999999999999998766544433        


Q ss_pred             --------------------CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce--------------EEEEeecCCC
Q 022184          153 --------------------AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--------------WTFLTRNSDE  198 (301)
Q Consensus       153 --------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~  198 (301)
                                          |...|.+++|+  +++|++++.|+.|++||++++..              +..+..+ ..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  286 (366)
T 3k26_A          210 TNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-QC  286 (366)
T ss_dssp             CSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-SC
T ss_pred             CcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-CC
Confidence                                77899999999  77999999999999999987644              5555554 44


Q ss_pred             CeeEEEEccC--CCcceEEEEEEeCCcceEEEEEccCceEe----eeeecc--CCCcEEEEEcCCCCEEEEeeCCCcEEE
Q 022184          199 KIELCRFSKD--GTKPFLFCTVQRGDKALLAVYDISTWNKI----GHKRLL--RKPASVLSISLDGKYLAMGSKDGDICV  270 (301)
Q Consensus       199 ~v~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i  270 (301)
                      .+.+++|+|+  ++.     +++++.|+.|++||+++++..    ..+..|  ...|++++|+|++++|++++.||.|++
T Consensus       287 ~v~~~~~s~~~~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  361 (366)
T 3k26_A          287 DIWYMRFSMDFWQKM-----LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR  361 (366)
T ss_dssp             CSSCCCCEECTTSSE-----EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cEEEEEEcCCCCCcE-----EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence            6999999999  887     788999999999999987533    356666  689999999999999999999999999


Q ss_pred             EeCCC
Q 022184          271 VDVKK  275 (301)
Q Consensus       271 ~~~~~  275 (301)
                      ||+.+
T Consensus       362 wd~~~  366 (366)
T 3k26_A          362 WDRLR  366 (366)
T ss_dssp             EEC--
T ss_pred             EEecC
Confidence            99853

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.5e-36  Score=245.87  Aligned_cols=236  Identities=12%  Similarity=0.063  Sum_probs=194.1

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecC
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD  133 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d  133 (301)
                      ...+.+|.+.|++++|+|++++|++++.||.|++|++.+.........   ....|...|.+++|+|  ++++|++++.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD---SWRAHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEE---EEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecc---eeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            345689999999999999999999999999999999987653222211   1124778999999999  69999999999


Q ss_pred             CeEEEEeCCCc---------ceecccccCCccEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCceEEEEe---------
Q 022184          134 GHLRIMHWPSL---------RIILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLT---------  193 (301)
Q Consensus       134 g~i~v~d~~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------  193 (301)
                      |.|++||++++         +....+..|...|.+++|+|+  +++|++++.|+.|++||+++++.+..+.         
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999999876         445666778889999999999  9999999999999999998876543322         


Q ss_pred             ---ecCCCCeeEEEEccC---CCcceEEEEEEeCCcceEEEEEccCceE--eeeeeccCCCcEEEEEcCCC----CEEEE
Q 022184          194 ---RNSDEKIELCRFSKD---GTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDG----KYLAM  261 (301)
Q Consensus       194 ---~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~~~----~~l~~  261 (301)
                         ..+...+.+++|+|+   +..     +++++.++.+.+|+...++.  +..+..|...|++++|+|++    ++|++
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEK-----LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCE-----EEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred             cccCCcccceeEEEeccCCCCCcE-----EEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence               134456899999997   665     68888899998888877664  56677888999999999998    89999


Q ss_pred             eeCCCcEEEEeCCCc----------------------------------------------eeeccccccccCccEEEEE
Q 022184          262 GSKDGDICVVDVKKM----------------------------------------------EINHWSKRLHLGTSIALVE  295 (301)
Q Consensus       262 ~~~d~~i~i~~~~~~----------------------------------------------~~~~~~~~~~~~~~v~~~~  295 (301)
                      ++.||.|++||++.+                                              +.+..+ .+| ...|++++
T Consensus       236 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~~~  313 (351)
T 3f3f_A          236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDH-NGEVWSVS  313 (351)
T ss_dssp             EETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE-CTT-SSCEEEEE
T ss_pred             EcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-ecc-cccEEEEE
Confidence            999999999999864                                              333333 567 88999999


Q ss_pred             EccCCC
Q 022184          296 FCPTQR  301 (301)
Q Consensus       296 ~spdg~  301 (301)
                      |+|+|+
T Consensus       314 ~s~~~~  319 (351)
T 3f3f_A          314 WNLTGT  319 (351)
T ss_dssp             ECSSSC
T ss_pred             EcCCCC
Confidence            999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-36  Score=248.67  Aligned_cols=229  Identities=10%  Similarity=0.038  Sum_probs=196.7

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCc--cccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeE
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (301)
                      +..|.++|.+++|+|++++|++++.|+.|++||+.+++  ....       ...|...|.+++|+|++++|++++.|+.|
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~l~~~~~dg~i   76 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE-------LKEHNGQVTGVDWAPDSNRIVTCGTDRNA   76 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE-------EECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee-------ecCCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence            34589999999999999999999999999999998875  2111       12467899999999999999999999999


Q ss_pred             EEEeCCCcceec--ccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce---EEEEeecCCCCeeEEEEccCCCc
Q 022184          137 RIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       137 ~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      ++||+++++...  .+..+...|.+++|+|++++|++++.|+.|++||++.++.   ...+...+...+.+++|+|+++.
T Consensus        77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  156 (372)
T 1k8k_C           77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL  156 (372)
T ss_dssp             EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred             EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence            999998876433  3356778999999999999999999999999999998763   34444445667999999999987


Q ss_pred             ceEEEEEEeCCcceEEEEEcc------------------CceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          212 PFLFCTVQRGDKALLAVYDIS------------------TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                           +++++.|+.|++||++                  .++.+..+..|...+.+++|+|++++|++++.|+.|++||+
T Consensus       157 -----l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          157 -----LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             -----EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             -----EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence                 7888999999999953                  56777778888899999999999999999999999999999


Q ss_pred             CCceeeccccccccCccEEEEEEccCCC
Q 022184          274 KKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       274 ~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++++.+..+ ..| ..+|.+++|+|+|+
T Consensus       232 ~~~~~~~~~-~~~-~~~v~~~~~~~~~~  257 (372)
T 1k8k_C          232 DKKMAVATL-ASE-TLPLLAVTFITESS  257 (372)
T ss_dssp             GGTTEEEEE-ECS-SCCEEEEEEEETTE
T ss_pred             CCCceeEEE-ccC-CCCeEEEEEecCCC
Confidence            999888777 567 78999999999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-35  Score=247.58  Aligned_cols=263  Identities=12%  Similarity=0.174  Sum_probs=211.6

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      +.+++|+++    ++||+       +.|+.|+||+.....  .    .....+.+|...|++++|+|+|++|++|+.|+.
T Consensus       108 ~~~l~wS~~----n~lAv-------gld~tV~lWd~~tg~--~----~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~  170 (420)
T 4gga_A          108 LNLVDWSSG----NVLAV-------ALDNSVYLWSASSGD--I----LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE  170 (420)
T ss_dssp             CBCEEECTT----SEEEE-------EETTEEEEEETTTCC--E----EEEEECCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             ceeEEECCC----CEEEE-------EeCCEEEEEECCCCC--E----EEEEEecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence            567899854    47776       356788999876432  1    113346788999999999999999999999999


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc-eecccccCCccEEEEEecCC
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSLD  165 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~  165 (301)
                      |++||+++++.....       ..|...+.++++  ++.+|++|+.|+.+++||..... .+..+..|...+..+.|+|+
T Consensus       171 v~iWd~~~~~~~~~~-------~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~  241 (420)
T 4gga_A          171 VQLWDVQQQKRLRNM-------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD  241 (420)
T ss_dssp             EEEEETTTTEEEEEE-------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEEEcCCCcEEEEE-------eCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCC
Confidence            999999887653222       236677777666  57899999999999999987644 44556778889999999999


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCce----EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          166 SEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       166 ~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      ++++++++.|+.+++|+..+++.    +.... .+...|.+++|+|.+..++  +...++.|+.|++||+.+++....+.
T Consensus       242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~l--a~~~gs~D~~I~iwd~~t~~~~~~~~  318 (420)
T 4gga_A          242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVL--ATGGGTSDRHIRIWNVCSGACLSAVD  318 (420)
T ss_dssp             SSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEE--EEEECTTTCEEEEEETTTTEEEEEEE
T ss_pred             CCeeeeeeccccceEEeeccccccceeeeeec-ccCCceeeeeeCCCcccEE--EEEeecCCCEEEEEeCCccccceeec
Confidence            99999999999999999987653    23333 3455799999999988732  24567789999999999999887666


Q ss_pred             ccCCCcEEEEEcCCCCEEEEee--CCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          242 LLRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      . ...+.++.|+|+++.+++++  .|+.|+|||+.+++++..+ .+| ...|++++|+|||+
T Consensus       319 ~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-~gH-~~~V~~l~~spdg~  377 (420)
T 4gga_A          319 A-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGH-TSRVLSLTMSPDGA  377 (420)
T ss_dssp             C-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCC-SSCEEEEEECTTSS
T ss_pred             c-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE-cCC-CCCEEEEEEcCCCC
Confidence            5 45788999999999888765  7899999999999998887 689 99999999999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.6e-36  Score=251.95  Aligned_cols=289  Identities=13%  Similarity=0.111  Sum_probs=217.0

Q ss_pred             CceeEEEeeeecCCC-------ccEEEecCCccccCCcCceeEeeeCCC--------------ccee----eeCC-ceec
Q 022184            4 GGTVTCGSWIKRPEN-------VNLVVLGKSSRASSSPSVLEIFSFDPK--------------TTSV----YTSP-LVTY   57 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~-------~~~~~~g~~~~~~~~~~~~~i~~~~~~--------------~~~~----~~~~-~~~~   57 (301)
                      .-|..|+.|.|+...       ...+++|+...  +..+.|.++.++..              ...+    ...+ ....
T Consensus        45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~--~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  122 (430)
T 2xyi_A           45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS--DEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE  122 (430)
T ss_dssp             SSCCSCEEECSCCEECTTCSCEEEEEEEECCCS--SSCEEEEEEEEEEC--------------------------CEEEE
T ss_pred             CCCceEEEECcccccccCCCcceEEEEEEEcCC--CCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEE
Confidence            357889999987631       25677877543  26678888876411              0000    0111 1224


Q ss_pred             cccccCCcceEEEECCC-CCeEEEEecCCcEEEEEEcCCcccccc---ccccCCCCCCCCCeeEEEEeeCCC-EEEEeec
Q 022184           58 VFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINL---LAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGV  132 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~~w~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~  132 (301)
                      ....|.+.|++++|+|+ +.+|++++.||.|++|++.........   .........|...+.+++|+|++. +|++++.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            45689999999999997 678999999999999999763111100   000011124678899999999988 9999999


Q ss_pred             CCeEEEEeCCCcce-------ecccccCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCC---ceEEEEeecCCCCee
Q 022184          133 DGHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIE  201 (301)
Q Consensus       133 dg~i~v~d~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~  201 (301)
                      ||.|++||+.++..       ...+..|...|.+++|+| ++.+|++++.|+.|++||++++   +.+..+.. +...++
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~  281 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-HTAEVN  281 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC-CSSCEE
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec-CCCCeE
Confidence            99999999987332       234456778999999999 6779999999999999999987   45566654 455799


Q ss_pred             EEEEccCCCcceEEEEEEeCCcceEEEEEccC-ceEeeeeeccCCCcEEEEEcCCCC-EEEEeeCCCcEEEEeCCCc---
Q 022184          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKM---  276 (301)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~~~~~~---  276 (301)
                      +++|+|++.++    +++++.|+.|++||+++ ..++..+..|...|.+++|+|+++ +|++++.|+.|++||+...   
T Consensus       282 ~i~~~p~~~~~----l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~  357 (430)
T 2xyi_A          282 CLSFNPYSEFI----LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  357 (430)
T ss_dssp             EEEECSSCTTE----EEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred             EEEeCCCCCCE----EEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence            99999999862    57889999999999997 456777888999999999999985 6999999999999999872   


Q ss_pred             -----------eeeccccccccCccEEEEEEccCCC
Q 022184          277 -----------EINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       277 -----------~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                                 +.+... .+| ...|++++|+|+++
T Consensus       358 ~~~~~~~~~~~~~~~~~-~~h-~~~v~~~~~~p~~~  391 (430)
T 2xyi_A          358 QSTEDAEDGPPELLFIH-GGH-TAKISDFSWNPNEP  391 (430)
T ss_dssp             CCHHHHHHCCTTEEEEC-CCC-SSCEEEEEECSSST
T ss_pred             cCccccccCCcceEEEc-CCC-CCCceEEEECCCCC
Confidence                       333333 567 88899999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.6e-36  Score=278.14  Aligned_cols=267  Identities=15%  Similarity=0.170  Sum_probs=228.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|+|+   +.++++|+      .++.+++|+.....        ....+.+|.+.|.+++|+|++++|++++
T Consensus       614 h~~~v~~~~~s~~---~~~l~s~~------~d~~i~vw~~~~~~--------~~~~~~~h~~~v~~~~~s~~~~~l~s~~  676 (1249)
T 3sfz_A          614 HTDAVYHACFSQD---GQRIASCG------ADKTLQVFKAETGE--------KLLDIKAHEDEVLCCAFSSDDSYIATCS  676 (1249)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEETTTCC--------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccEEEEEECCC---CCEEEEEe------CCCeEEEEECCCCC--------EEEEeccCCCCEEEEEEecCCCEEEEEe
Confidence            4678999999988   67888865      67788999886543        1345679999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  160 (301)
                      .|+.|++||+.+++....+       ..|...|.+++|+|  ++.++++++.|+.|++||+++++....+..|...|.++
T Consensus       677 ~d~~v~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~  749 (1249)
T 3sfz_A          677 ADKKVKIWDSATGKLVHTY-------DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC  749 (1249)
T ss_dssp             TTSEEEEEETTTCCEEEEE-------ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred             CCCeEEEEECCCCceEEEE-------cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence            9999999999887653322       23678999999999  56689999999999999999999888888999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC------------CCCeeEEEEccCCCcceEEEEEEeCCcceEEE
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~  228 (301)
                      +|+|++++|++++.|+.|++||+++++....+....            ...+.+++|+|+++.     ++.++ ++.+.+
T Consensus       750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~-----l~~~~-~~~v~~  823 (1249)
T 3sfz_A          750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK-----IIVAA-KNKVLL  823 (1249)
T ss_dssp             EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE-----EEEEE-TTEEEE
T ss_pred             EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCE-----EEEEc-CCcEEE
Confidence            999999999999999999999999988777664321            235889999999997     33333 689999


Q ss_pred             EEccCceEeeeee-ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          229 YDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       229 ~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ||+.++..+..+. .|...+.+++|+|+++++++++.|+.|++||+.+++....+ .+| ...|++++|+|||+
T Consensus       824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~h-~~~v~~v~~spdg~  895 (1249)
T 3sfz_A          824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC-RGH-LSWVHGVMFSPDGS  895 (1249)
T ss_dssp             EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE-CCC-SSCEEEEEECTTSS
T ss_pred             EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec-CCC-ccceEEEEECCCCC
Confidence            9999988776655 67889999999999999999999999999999999888776 678 89999999999984

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.6e-36  Score=247.53  Aligned_cols=258  Identities=16%  Similarity=0.122  Sum_probs=201.4

Q ss_pred             CCceeEEEeeee-cCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCC-----ceeccccccCCcceEEEECC-CC
Q 022184            3 GGGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-----LVTYVFDESEGDPMTIAVNP-SG   75 (301)
Q Consensus         3 ~~~~v~~~~w~~-~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~-~~   75 (301)
                      ...+|+|++|+| +   +.++++|+      .++.+++|+++..........     .......+|...|.+++|+| ++
T Consensus        42 h~~~v~~~~~s~~~---~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  112 (408)
T 4a11_B           42 HGGGINTLDIEPVE---GRYMLSGG------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT  112 (408)
T ss_dssp             CSSCEEEEEECTTT---CCEEEEEE------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred             cCCcEEEEEEecCC---CCEEEEEc------CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence            468999999997 6   67888866      677889999876442211100     00112246999999999999 77


Q ss_pred             CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC---CCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (301)
Q Consensus        76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  152 (301)
                      ++|++++.|+.|++||+.+++...        .+.+...+.++.|+|.   +.++++++.|+.|++||+++++.+..+..
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  184 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQTAD--------VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG  184 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEEEE--------EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred             cEEEEEeCCCeEEEeeCCCCccce--------eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence            899999999999999998876522        2235577899999984   45999999999999999999988888888


Q ss_pred             CCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCc-eEEEEe--------------ecCCCCeeEEEEccCCCcceEEE
Q 022184          153 AHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGV-AWTFLT--------------RNSDEKIELCRFSKDGTKPFLFC  216 (301)
Q Consensus       153 ~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~--------------~~~~~~v~~~~~~~~~~~~~~~~  216 (301)
                      |...|.+++|+|+++ +|++++.|+.|++||++++. ....+.              ..+...|.+++|+|++++     
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----  259 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-----  259 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-----
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE-----
Confidence            889999999999998 58999999999999998765 333331              234557999999999997     


Q ss_pred             EEEeCCcceEEEEEccCce-----------------------------------------------EeeeeeccCCCcEE
Q 022184          217 TVQRGDKALLAVYDISTWN-----------------------------------------------KIGHKRLLRKPASV  249 (301)
Q Consensus       217 ~~~~~~~~~i~~~d~~~~~-----------------------------------------------~~~~~~~~~~~v~~  249 (301)
                      +++++.|+.|++||+++++                                               .+..+..|...|.+
T Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~  339 (408)
T 4a11_B          260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDC  339 (408)
T ss_dssp             EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEE
Confidence            6788888889999876543                                               34455668889999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          250 LSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       250 ~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      ++|+|++++|++++.||.|++||+.+++.+...
T Consensus       340 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  372 (408)
T 4a11_B          340 CVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD  372 (408)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred             EEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence            999999999999999999999999998776543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-36  Score=245.05  Aligned_cols=232  Identities=15%  Similarity=0.209  Sum_probs=200.2

Q ss_pred             ceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC
Q 022184           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (301)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (301)
                      .....+.+|.+.|++++|+|++++|++++.|+.|++||+.+++....+       ..|...|.+++|+|++++|++++.|
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s~~~d   95 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-------DGHTGTIWSIDVDCFTKYCVTGSAD   95 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-------hhcCCcEEEEEEcCCCCEEEEEeCC
Confidence            335668899999999999999999999999999999999877653222       2367899999999999999999999


Q ss_pred             CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC-----CcEEEEeCCCCce-----------EEEEeecCC
Q 022184          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVA-----------WTFLTRNSD  197 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~-----------~~~~~~~~~  197 (301)
                      |.|++||+.+++.+..+. +...+.+++|+|++++|++++.+     +.|++||++....           ...+..+..
T Consensus        96 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (369)
T 3zwl_B           96 YSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG  174 (369)
T ss_dssp             TEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred             CeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence            999999999998877665 77899999999999999999998     9999999976542           222222211


Q ss_pred             -CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC-ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          198 -EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       198 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                       ..+.+++|+|+++.     +++++.++.|++||+++ .+.+..+..|...+.+++|+|++++|++++.|+.|++||+++
T Consensus       175 ~~~~~~~~~~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          175 LDAATVAGWSTKGKY-----IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             CCCEEEEEECGGGCE-----EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccceeEEEEcCCCCE-----EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence             26999999999997     68889999999999998 788888888999999999999999999999999999999999


Q ss_pred             ceeeccccccccCccEEEEEEccCCC
Q 022184          276 MEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       276 ~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++....+.  + ...+..++|+|+|+
T Consensus       250 ~~~~~~~~--~-~~~~~~~~~~~~~~  272 (369)
T 3zwl_B          250 LQVLKKYE--T-DCPLNTAVITPLKE  272 (369)
T ss_dssp             CCEEEEEE--C-SSCEEEEEECSSSS
T ss_pred             Cceeeeec--C-CCCceeEEecCCCc
Confidence            98887764  5 78899999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.8e-36  Score=238.86  Aligned_cols=249  Identities=13%  Similarity=0.156  Sum_probs=196.3

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      +.+++|+++    +++|+|       .|++|+||+.+...  .    .....+.+|...|.+++|+|++++|++|+.|++
T Consensus        28 ~~~l~WS~~----~~lAvg-------~D~tV~iWd~~tg~--~----~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~   90 (318)
T 4ggc_A           28 LNLVDWSSG----NVLAVA-------LDNSVYLWSASSGD--I----LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE   90 (318)
T ss_dssp             CBCEEECTT----SEEEEE-------ETTEEEEEETTTCC--E----EEEEECCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceEEEECCC----CEEEEE-------eCCEEEEEECCCCC--E----EEEEEecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            467999965    377763       57888999876432  1    113346788999999999999999999999999


Q ss_pred             EEEEEEcCCccccccccc----------------------------------cCCCCCCCCCeeEEEEeeCCCEEEEeec
Q 022184           87 CKLFEVYGGATDINLLAK----------------------------------KMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (301)
                      |++|++++++........                                  ......|...+..+.+++++++|++++.
T Consensus        91 v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  170 (318)
T 4ggc_A           91 VQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN  170 (318)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec
Confidence            999999877642211100                                  0011235678899999999999999999


Q ss_pred             CCeEEEEeCCCccee----cccccCCccEEEEEecCCCcEE---EEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEE
Q 022184          133 DGHLRIMHWPSLRII----LDEPKAHKSVLDMDFSLDSEFL---ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (301)
Q Consensus       133 dg~i~v~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l---~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  205 (301)
                      |+.|++||+++++..    .....+...|..++++|++..+   ++++.++.|++||.+..........  ...+..+.|
T Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~--~~~v~~~~~  248 (318)
T 4ggc_A          171 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA--HSQVCSILW  248 (318)
T ss_dssp             TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC--SSCEEEEEE
T ss_pred             CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc--eeeeeeeee
Confidence            999999999877643    2334456789999999976633   4567889999999998887766653  345999999


Q ss_pred             ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      +|++..++   +++++.|+.|++||+++++++..+.+|...|++++|+|++++|++|+.|++|+|||+.+.+
T Consensus       249 ~~~~~~~~---~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          249 SPHYKELI---SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             ETTTTEEE---EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             cccccceE---EEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            99999732   3456689999999999999999999999999999999999999999999999999997653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=7.7e-36  Score=249.10  Aligned_cols=260  Identities=14%  Similarity=0.139  Sum_probs=205.4

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceee--eCCceeccccccCCcceEEEECCCCC-eEEE
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGD-DFVC   80 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~   80 (301)
                      .++|++++|+|+  +..++++|+      .++.+++|++........  ........+.+|...|.+++|+|+++ +|++
T Consensus       128 ~~~v~~l~~~p~--~~~~lat~~------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          128 EGEVNRARYMPQ--NACVIATKT------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             SSCCSEEEEETT--EEEEEEEEC------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred             CCcEEEEEECCC--CCcEEEEEC------CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence            567999999964  256777765      567789999975321110  01223445789999999999999998 9999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCc---ceecccccCCcc
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL---RIILDEPKAHKS  156 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~  156 (301)
                      ++.||.|++|++..................|...|.+++|+| ++.+|++++.|+.|++||++++   +....+..|...
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            999999999999874432221111112224778899999999 7889999999999999999876   455566678889


Q ss_pred             EEEEEecCCCc-EEEEEeCCCcEEEEeCCC-CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC-
Q 022184          157 VLDMDFSLDSE-FLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-  233 (301)
Q Consensus       157 i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-  233 (301)
                      |.+++|+|+++ +|++++.|+.|++||+++ ...+..+..+ ...|.+++|+|+++.+    +++++.|+.|++||+.. 
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~~----l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETI----LASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-SSCEEEEEECSSCTTE----EEEEETTSCCEEEEGGGT
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-CCCEEEEEECCCCCCE----EEEEeCCCcEEEEeCCCC
Confidence            99999999987 688999999999999998 4556666654 4579999999999752    57888999999999987 


Q ss_pred             -------------ceEeeeeeccCCCcEEEEEcCCCC-EEEEeeCCCcEEEEeCCCc
Q 022184          234 -------------WNKIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       234 -------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~~~~~~  276 (301)
                                   .+.+.....|...|++++|+|+++ +|++++.||.|++|++...
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                         245566677888999999999998 8999999999999999764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.8e-35  Score=246.23  Aligned_cols=265  Identities=12%  Similarity=0.157  Sum_probs=215.7

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEEC--CCCCeEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN--PSGDDFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~~   80 (301)
                      ..++|++++|+++   . ++++|+      .|+.+++|+++...        ....+.+|.+.|.+++|+  +++++|++
T Consensus       161 h~~~V~~l~~~~~---~-~l~s~s------~dg~i~vwd~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~~l~s  222 (464)
T 3v7d_B          161 HDGGVWALKYAHG---G-ILVSGS------TDRTVRVWDIKKGC--------CTHVFEGHNSTVRCLDIVEYKNIKYIVT  222 (464)
T ss_dssp             CSSCEEEEEECST---T-EEEEEE------TTSCEEEEETTTTE--------EEEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred             CCcCEEEEEEcCC---C-EEEEEe------CCCCEEEEECCCCc--------EEEEECCCCCccEEEEEecCCCCCEEEE
Confidence            4678999999866   3 666655      67888999886432        234577899999999998  57789999


Q ss_pred             EecCCcEEEEEEcCCccccccccc----------------cCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc
Q 022184           81 STTNGGCKLFEVYGGATDINLLAK----------------KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  144 (301)
                      ++.|+.|++||+.+..........                ......|...+.++  +++++++++++.|+.|++||++++
T Consensus       223 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~  300 (464)
T 3v7d_B          223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM  300 (464)
T ss_dssp             EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT
T ss_pred             EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Confidence            999999999999876542211000                00112344556655  788999999999999999999999


Q ss_pred             ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc
Q 022184          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (301)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  224 (301)
                      +.+..+..|...|.+++|+|+++++++++.|+.|++||+++++.+..+..|. ..+.+++|++  ..     +++++.|+
T Consensus       301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~--~~-----l~s~s~dg  372 (464)
T 3v7d_B          301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT-ALVGLLRLSD--KF-----LVSAAADG  372 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECS--SE-----EEEEETTS
T ss_pred             cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CcEEEEEEcC--CE-----EEEEeCCC
Confidence            9988888898999999999999999999999999999999999999887654 4799999984  44     68899999


Q ss_pred             eEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      .|++||+++.+..... .+...+..++|+|+++++++++ ||.|++||+++++.+......| ...|.+++|++
T Consensus       373 ~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~-~~~v~~v~~~~  443 (464)
T 3v7d_B          373 SIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKD-ADQIWSVNFKG  443 (464)
T ss_dssp             EEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTT-CSEEEEEEEET
T ss_pred             cEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccC-CCcEEEEEecC
Confidence            9999999987765443 3566788899999999999998 8999999999999988655677 89999999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.5e-35  Score=245.31  Aligned_cols=250  Identities=15%  Similarity=0.191  Sum_probs=203.4

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      .+..|+|++|+|+   +.++|+|+      .|+.+++|++....        ....+.+|...+.++.++  +..|++++
T Consensus       146 ~~~~V~sv~fspd---g~~lasgs------~Dg~v~iWd~~~~~--------~~~~~~~h~~~v~~~s~~--~~~l~sgs  206 (420)
T 4gga_A          146 PGEYISSVAWIKE---GNYLAVGT------SSAEVQLWDVQQQK--------RLRNMTSHSARVGSLSWN--SYILSSGS  206 (420)
T ss_dssp             TTCCEEEEEECTT---SSEEEEEE------TTSCEEEEETTTTE--------EEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             CCCcEEEEEECCC---CCEEEEEE------CCCeEEEEEcCCCc--------EEEEEeCCCCceEEEeeC--CCEEEEEe
Confidence            3567999999988   67888876      67788999886432        134577899999998884  67999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce----ecccccCCccEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI----ILDEPKAHKSVL  158 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~i~  158 (301)
                      .|+.+++||...........      ..|...+..+.|+|+++++++++.|+.+++|+..+++.    +.....+...|.
T Consensus       207 ~d~~i~~~d~~~~~~~~~~~------~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~  280 (420)
T 4gga_A          207 RSGHIHHHDVRVAEHHVATL------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK  280 (420)
T ss_dssp             TTSEEEEEETTSSSCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEE
T ss_pred             CCCceeEeeecccceeeEEe------cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCcee
Confidence            99999999987655422221      23678899999999999999999999999999987653    334556778999


Q ss_pred             EEEecCCCc-EEEE--EeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184          159 DMDFSLDSE-FLAT--TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       159 ~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  235 (301)
                      +++|+|++. .+++  ++.|++|++||+++++....+..+  ..+.++.|+|+++.++   .+.+..|+.|++||+.+++
T Consensus       281 ~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~--~~v~~~~~~~~~~~lv---~~sg~~d~~I~iwd~~~~~  355 (420)
T 4gga_A          281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELI---SGHGFAQNQLVIWKYPTMA  355 (420)
T ss_dssp             EEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS--SCEEEEEEETTTTEEE---EEECTTTCCEEEEETTTCC
T ss_pred             eeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc--cceeeeeecCCCCeEE---EEEecCCCEEEEEECCCCc
Confidence            999999665 5554  457999999999999998888754  3589999999999732   2445689999999999999


Q ss_pred             EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      ++..+.+|...|++++|+|||++|++|+.|++|+|||+......+..
T Consensus       356 ~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~  402 (420)
T 4gga_A          356 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR  402 (420)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchh
Confidence            99999999999999999999999999999999999999876554443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.1e-36  Score=243.50  Aligned_cols=256  Identities=14%  Similarity=0.196  Sum_probs=199.6

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEE------ECCCCC
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA------VNPSGD   76 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~   76 (301)
                      ...+|+|++|+|+..++.++++|+      .++.+++|++.....       ....+.+|...|.++.      |+|+++
T Consensus        64 ~~~~v~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~s~~~~  130 (357)
T 3i2n_A           64 KAKPIKCGTFGATSLQQRYLATGD------FGGNLHIWNLEAPEM-------PVYSVKGHKEIINAIDGIGGLGIGEGAP  130 (357)
T ss_dssp             ESSCEEEEECTTCCTTTCCEEEEE------TTSCEEEECTTSCSS-------CSEEECCCSSCEEEEEEESGGGCC-CCC
T ss_pred             ccCcEEEEEEcCCCCCCceEEEec------CCCeEEEEeCCCCCc-------cEEEEEecccceEEEeeccccccCCCcc
Confidence            356899999997732346777765      667789998865431       1334678999999995      578999


Q ss_pred             eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEE----EeeCCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLS----FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  152 (301)
                      +|++++.|+.|++||+...+........  ........+.+++    |+|++++|++++.|+.|++||+++++... ...
T Consensus       131 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~  207 (357)
T 3i2n_A          131 EIVTGSRDGTVKVWDPRQKDDPVANMEP--VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETN  207 (357)
T ss_dssp             EEEEEETTSCEEEECTTSCSSCSEEECC--CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEE
T ss_pred             EEEEEeCCCeEEEEeCCCCCCcceeccc--cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecC
Confidence            9999999999999999877632222111  1111245788888    78899999999999999999999888743 456


Q ss_pred             CCccEEEEEecC---CCcEEEEEeCCCcEEEEeCCCCceEEEEe----ecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          153 AHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       153 ~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      +...|.+++|+|   ++++|++++.|+.|++||+++++....+.    ..+...+.+++|+|+++.+    +++++.|+.
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~~~dg~  283 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL----FLTAGGAGG  283 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE----EEEEETTSE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE----EEEEeCCCc
Confidence            778999999999   99999999999999999998766544433    2345679999999999831    688899999


Q ss_pred             EEEEEccCc-------------------eEeeeeeccCCCcEEEEEcCCCCEEE-EeeCCCcEEEEeCCCcee
Q 022184          226 LAVYDISTW-------------------NKIGHKRLLRKPASVLSISLDGKYLA-MGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       226 i~~~d~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~i~~~~~~~~  278 (301)
                      |++||+++.                   +.+..+..|...|++++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus       284 i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             EEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            999999753                   35666788899999999999999998 799999999999987654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-36  Score=253.88  Aligned_cols=253  Identities=10%  Similarity=0.033  Sum_probs=194.2

Q ss_pred             CceeEEEeeeecC---CCccEEEecCCccccCCcCceeEeeeCCCcce---eeeCCceeccccccCCcceEEEECCCCCe
Q 022184            4 GGTVTCGSWIKRP---ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS---VYTSPLVTYVFDESEGDPMTIAVNPSGDD   77 (301)
Q Consensus         4 ~~~v~~~~w~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   77 (301)
                      .+.|++++|+|+.   .+..++|+|+      .|+++++|++......   ..........+.+|...|.+++|++++ .
T Consensus       207 ~~~V~~v~wsp~~~~~~~~~~LAs~s------~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~  279 (524)
T 2j04_B          207 FGEVWDLKWHEGCHAPHLVGCLSFVS------QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T  279 (524)
T ss_dssp             CCSEEEEEECSSCCCSSSSCEEEEEE------TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred             CCcEEEEEECCCCCCCCCCceEEEEe------cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence            4679999999862   1245787765      6788899998654311   000111223578899999999999864 8


Q ss_pred             EEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEE--EEeeCC-CEEEEeecCCeEEEEeCCCcceecccccCC
Q 022184           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCL--SFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (301)
Q Consensus        78 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  154 (301)
                      |++|+.||+|++||++++......      ...|...|.++  .|+|++ .+|++++.|++|++||+++++....+..|.
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~  353 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFY------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF  353 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEE------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEE------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc
Confidence            999999999999999865432111      12477899999  578887 899999999999999999887766555554


Q ss_pred             c--cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184          155 K--SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (301)
Q Consensus       155 ~--~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  232 (301)
                      .  .|.+++|+|+++.|++++.|++|++||++++.++..+..| ...|.+++|+|+++.     +++++.|++|++||+.
T Consensus       354 ~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH-~~~V~sva~Sp~g~~-----l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          354 RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR-ETTITAIGVSRLHPM-----VLAGSADGSLIITNAA  427 (524)
T ss_dssp             SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC-SSCEEEEECCSSCCB-----CEEEETTTEEECCBSC
T ss_pred             ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC-CCceEEEEeCCCCCe-----EEEEECCCEEEEEech
Confidence            3  5889999999999999999999999999999888878765 457999999999997     6889999999999853


Q ss_pred             Cc--------------------------------------------eEeeeeeccCCCcEEEEEcCCC---CEEEEeeCC
Q 022184          233 TW--------------------------------------------NKIGHKRLLRKPASVLSISLDG---KYLAMGSKD  265 (301)
Q Consensus       233 ~~--------------------------------------------~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d  265 (301)
                      ..                                            ..+..+.+|...|.+++|+|++   .++|+|+.|
T Consensus       428 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~  507 (524)
T 2j04_B          428 RRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSA  507 (524)
T ss_dssp             SSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTT
T ss_pred             HhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccC
Confidence            21                                            0112233456789999999995   499999999


Q ss_pred             CcEEEEeCCC
Q 022184          266 GDICVVDVKK  275 (301)
Q Consensus       266 ~~i~i~~~~~  275 (301)
                      |.|+||+++-
T Consensus       508 g~vrlw~l~~  517 (524)
T 2j04_B          508 GLLTLEYLSL  517 (524)
T ss_dssp             SEEEEEECSC
T ss_pred             ceEEEEEccc
Confidence            9999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.2e-35  Score=239.74  Aligned_cols=232  Identities=12%  Similarity=0.116  Sum_probs=189.6

Q ss_pred             eccccccCCcceEEEECCCC-CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecC
Q 022184           56 TYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD  133 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d  133 (301)
                      ...+.+|.+.|.+++|+|++ ++|++++.|+.|++||+.+.+.....     ....|...|.+++|+| ++++|++++.|
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----QGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----CCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----ecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            44678999999999999999 89999999999999999876643221     2234788999999999 78999999999


Q ss_pred             CeEEEEeCCCcceecccccC---CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC
Q 022184          134 GHLRIMHWPSLRIILDEPKA---HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (301)
                      +.|++||+++. ....+..+   ...|.+++|+|++++|++++.|+.|++||+ .++.+..+..+. ..|.+++|+|+++
T Consensus       141 ~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~-~~v~~~~~~~~~~  217 (383)
T 3ei3_B          141 GATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK-AKVTHAEFNPRCD  217 (383)
T ss_dssp             TEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS-SCEEEEEECSSCT
T ss_pred             CEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC-CcEEEEEECCCCC
Confidence            99999999863 33444333   367999999999999999999999999999 567777777654 5799999999998


Q ss_pred             cceEEEEEEeCCcceEEEEEccC----ceEeeeeeccCCCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeecccccc
Q 022184          211 KPFLFCTVQRGDKALLAVYDIST----WNKIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (301)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~  285 (301)
                      .+    +++++.|+.|++||+++    +..+..+ .|...+.+++|+| ++++|++++.|+.|++||+++++....+. .
T Consensus       218 ~~----l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~  291 (383)
T 3ei3_B          218 WL----MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII-I  291 (383)
T ss_dssp             TE----EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE-E
T ss_pred             CE----EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc-c
Confidence            31    68889999999999998    5555544 6889999999999 99999999999999999999876654442 1


Q ss_pred             c----------------cCccEEEEEEccCCC
Q 022184          286 H----------------LGTSIALVEFCPTQR  301 (301)
Q Consensus       286 ~----------------~~~~v~~~~~spdg~  301 (301)
                      |                ....+..++|+|||+
T Consensus       292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~  323 (383)
T 3ei3_B          292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ  323 (383)
T ss_dssp             CCBCCCTTSCCCCCEECSSSSEEEEECBCCTT
T ss_pred             ccccccccccceEEeccCCCCceEEEecCCcc
Confidence            1                124556688888774

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.1e-35  Score=245.17  Aligned_cols=231  Identities=11%  Similarity=0.036  Sum_probs=162.6

Q ss_pred             cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--------CCCEEEEeecC
Q 022184           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--------DGSRFAAGGVD  133 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--------~~~~l~~~~~d  133 (301)
                      |...+....+++++.+|++++.|++|++||.+.++.......  .....|.+.|.+++|+|        |+++|++++.|
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~--~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVL--GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE--CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeee--cccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence            333344444455677899999999999999988764322211  22335889999999998        78999999999


Q ss_pred             CeEEEEeCCCcceecccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEe-------------------
Q 022184          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLT-------------------  193 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-------------------  193 (301)
                      ++|+|||++++..+.....|+.++.+++|+|++. +|++++.|++|++||+++++......                   
T Consensus       166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            9999999988888788888999999999999875 89999999999999999876543321                   


Q ss_pred             -----ecCCCCeeEEEEc-cCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEE------------------
Q 022184          194 -----RNSDEKIELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV------------------  249 (301)
Q Consensus       194 -----~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~------------------  249 (301)
                           ..+...+.++.|+ |+++.     +++++.|+.+++||+..++....+..+...+..                  
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~-----l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSG-----ILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG  320 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCE-----EEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC
T ss_pred             eeeecccccccceeeeeecCCCCE-----EEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee
Confidence                 1233457788886 78887     788999999999999877655444443332222                  


Q ss_pred             EEEcC--CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          250 LSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       250 ~~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..|+|  ++.++++|+.||.|++||+.+++..... ..| ..+|.+++|+|||+
T Consensus       321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-~~~-~~~V~svafspdG~  372 (393)
T 4gq1_A          321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-IQL-GMPIVDFCWHQDGS  372 (393)
T ss_dssp             CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE-EEC-SSCEEEEEECTTSS
T ss_pred             EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe-cCC-CCcEEEEEEcCCCC
Confidence            23333  3456778889999999999998877665 456 78999999999996

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-35  Score=262.26  Aligned_cols=249  Identities=11%  Similarity=0.110  Sum_probs=203.4

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC--CCeEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~   80 (301)
                      ..++|+|++|+|+   +.++++|+      .++.+++|+........      ...+.+|.+.|.+++|+|+  +++|++
T Consensus         8 H~~~V~~l~~s~d---g~~latg~------~dg~I~vwd~~~~~~~~------~~~l~~h~~~V~~l~~s~~~~~~~l~s   72 (753)
T 3jro_A            8 HNELIHDAVLDYY---GKRLATCS------SDKTIKIFEVEGETHKL------IDTLTGHEGPVWRVDWAHPKFGTILAS   72 (753)
T ss_dssp             CCCCEEEECCCSS---SCCEEEEE------TTTEEEEEEEETTEEEE------EEEECCCSSCEEEEEECCTTSCSEEEE
T ss_pred             CcceeEEEEECCC---CCeEEEEE------CCCcEEEEecCCCCCcc------ceeccCCcCceEEEEecCCCCCCEEEE
Confidence            4689999999988   56777765      67788999987543222      3457899999999999988  999999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC--CCEEEEeecCCeEEEEeCCCcce--ecccccCCcc
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKS  156 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~  156 (301)
                      ++.||.|++||+.++.....     .....|...|.+++|+|+  ++.+++|+.||.|++||++++..  ...+..|...
T Consensus        73 ~s~Dg~I~vwd~~~~~~~~~-----~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~  147 (753)
T 3jro_A           73 CSYDGKVLIWKEENGRWSQI-----AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (753)
T ss_dssp             EETTSCEEEEEEETTEEEEE-----EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred             EeCCCeEEEEECCCCccccc-----ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence            99999999999988752111     112237789999999998  99999999999999999987732  3345577789


Q ss_pred             EEEEEecC-------------CCcEEEEEeCCCcEEEEeCCCCc----eEEEEeecCCCCeeEEEEccC---CCcceEEE
Q 022184          157 VLDMDFSL-------------DSEFLATTSTDGSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKD---GTKPFLFC  216 (301)
Q Consensus       157 i~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~  216 (301)
                      |.+++|+|             ++++|++++.||.|++||++++.    ....+.. +...|.+++|+|+   +..     
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~~~-----  221 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSY-----  221 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC-CSSCEEEEEECCCCSSSEE-----
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC-CCCcEEEEEeccCCCCCCE-----
Confidence            99999999             58999999999999999998874    3344444 4557999999999   676     


Q ss_pred             EEEeCCcceEEEEEccCce-----EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          217 TVQRGDKALLAVYDISTWN-----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       217 ~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      +++++.|+.|++||+++++     .......+...+++++|+|++++|++++.||.|++|++..+.
T Consensus       222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            7889999999999998864     233344577889999999999999999999999999998643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.9e-35  Score=263.30  Aligned_cols=231  Identities=12%  Similarity=0.131  Sum_probs=202.5

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      ...+.+|.+.|.+++|+|++++|++++.||.|++||+.++.....+.       .|..+|.+++|+|++++|++++.||.
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~   78 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-------VTETPVRAGKFIARKNWIIVGSDDFR   78 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-------CCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe-------cCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence            34578999999999999999999999999999999998776532221       36789999999999999999999999


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceEEEEeecCCCCeeEEEEcc-CCCcce
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSK-DGTKPF  213 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~  213 (301)
                      |++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||++++ .....+.. +...+.+++|+| ++..  
T Consensus        79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~--  155 (814)
T 3mkq_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-HEHFVMCVAFNPKDPST--  155 (814)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-CSSCEEEEEEETTEEEE--
T ss_pred             EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-CCCcEEEEEEEcCCCCE--
Confidence            999999999998888889999999999999999999999999999999987 44455544 456799999999 6765  


Q ss_pred             EEEEEEeCCcceEEEEEccCceEeeeeeccC-CCcEEEEEcC--CCCEEEEeeCCCcEEEEeCCCceeeccccccccCcc
Q 022184          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLR-KPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (301)
Q Consensus       214 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~  290 (301)
                         +++++.|+.|++||+++++....+..+. ..+..++|+|  ++++|++++.||.|++||+.+++.+..+ ..| ...
T Consensus       156 ---l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~-~~~  230 (814)
T 3mkq_A          156 ---FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGH-MSN  230 (814)
T ss_dssp             ---EEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-ECC-SSC
T ss_pred             ---EEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-cCC-CCC
Confidence               7888999999999998887766665554 7899999999  9999999999999999999999988776 567 889


Q ss_pred             EEEEEEccCCC
Q 022184          291 IALVEFCPTQR  301 (301)
Q Consensus       291 v~~~~~spdg~  301 (301)
                      |.+++|+|+|+
T Consensus       231 v~~~~~~~~~~  241 (814)
T 3mkq_A          231 VSFAVFHPTLP  241 (814)
T ss_dssp             EEEEEECSSSS
T ss_pred             EEEEEEcCCCC
Confidence            99999999984

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2e-34  Score=242.97  Aligned_cols=255  Identities=15%  Similarity=0.232  Sum_probs=210.7

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      +.|+++.+     +++++|+      .|+.+++|+.....        ....+.+|.+.|.+++|+|++ .|++++.|++
T Consensus       125 ~~~~~~~~-----~~l~sgs------~dg~i~vwd~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~  184 (464)
T 3v7d_B          125 ITCLQFED-----NYVITGA------DDKMIRVYDSINKK--------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT  184 (464)
T ss_dssp             EEEEEEET-----TEEEEEE------TTSCEEEEETTTTE--------EEEEECCCSSCEEEEEECSTT-EEEEEETTSC
T ss_pred             EEEEEECC-----CEEEEEc------CCCcEEEEECCCCc--------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC
Confidence            56766652     4777766      67888999875432        234577999999999999988 9999999999


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCccee-----------------
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRII-----------------  147 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~-----------------  147 (301)
                      |++||+++++....+       ..|...|.+++|++  +++++++++.|+.|++||+++++..                 
T Consensus       185 i~vwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  257 (464)
T 3v7d_B          185 VRVWDIKKGCCTHVF-------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE  257 (464)
T ss_dssp             EEEEETTTTEEEEEE-------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred             EEEEECCCCcEEEEE-------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence            999999887652221       23778999999995  7789999999999999999876532                 


Q ss_pred             ------cccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184          148 ------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       148 ------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                            .....|...+.++  +++++++++++.|+.|++||+++++.+..+..+. ..+.+++|+|+++.     +++++
T Consensus       258 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~-----l~sg~  329 (464)
T 3v7d_B          258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-DRIYSTIYDHERKR-----CISAS  329 (464)
T ss_dssp             GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEEETTTTE-----EEEEE
T ss_pred             CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-CCEEEEEEcCCCCE-----EEEEe
Confidence                  2344566677766  5778999999999999999999999998887654 57999999999997     78999


Q ss_pred             CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .|+.|++||+++++.+..+..|...+.+++|+  +++|++++.||.|++||+.+++.....  .+ ...+..++|+|+|+
T Consensus       330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~-~~~~~~~~~~~~~~  404 (464)
T 3v7d_B          330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--HH-TNLSAITTFYVSDN  404 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE--EC-TTCCCEEEEEECSS
T ss_pred             CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee--cC-CCCccEEEEEeCCC
Confidence            99999999999999999999999999999997  579999999999999999988766554  24 66788889999874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-34  Score=252.55  Aligned_cols=269  Identities=16%  Similarity=0.177  Sum_probs=220.7

Q ss_pred             CCce-eEEEeeee--cCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEE
Q 022184            3 GGGT-VTCGSWIK--RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (301)
Q Consensus         3 ~~~~-v~~~~w~~--~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~   79 (301)
                      ...+ |+|++|+|  +   +.++++|+      .++.+++|++......-.........+..|...|.+++|+|++++|+
T Consensus        62 h~~~~v~~~~~sp~~~---~~~l~s~~------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  132 (615)
T 1pgu_A           62 HGSSVVTTVKFSPIKG---SQYLCSGD------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  132 (615)
T ss_dssp             TTTSCEEEEEECSSTT---CCEEEEEE------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             CCCceEEEEEECcCCC---CCEEEEec------CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence            3466 99999998  7   67888866      57788999985331000001122345678999999999999999999


Q ss_pred             EEecC----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC-EEEEeecCCeEEEEeCCCcceecccccCC
Q 022184           80 CSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (301)
Q Consensus        80 ~~~~d----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  154 (301)
                      +++.+    +.|++||  .++..       .....|...|.+++|+|+++ .+++++.|+.|++||+++++.+..+..|.
T Consensus       133 ~~~~~~~~~~~v~~~d--~~~~~-------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~  203 (615)
T 1pgu_A          133 VVGEGRDNFGVFISWD--SGNSL-------GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH  203 (615)
T ss_dssp             EEECCSSCSEEEEETT--TCCEE-------EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred             EeccCCCCccEEEEEE--CCCcc-------eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC
Confidence            99987    6888888  23221       11224778999999999997 79999999999999999999888888888


Q ss_pred             c---cEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEee---cCCCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184          155 K---SVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (301)
Q Consensus       155 ~---~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (301)
                      .   .|.+++|+|+ +++|++++.|+.|++||+++++.+..+..   .+...+.+++|+ ++..     +++++.|+.|+
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-----l~~~~~d~~i~  277 (615)
T 1pgu_A          204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQK-----FATVGADATIR  277 (615)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSE-----EEEEETTSEEE
T ss_pred             CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCE-----EEEEcCCCcEE
Confidence            8   8999999999 99999999999999999999999888833   456679999999 8887     78889999999


Q ss_pred             EEEccCceEeeeeecc----CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          228 VYDISTWNKIGHKRLL----RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       228 ~~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      +||+++++.+..+..+    ...+.++.|+ +++++++++.|+.|++||+.+++.+..+ ..| ...|++++| |+
T Consensus       278 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~-~~~-~~~v~~~~~-~~  349 (615)
T 1pgu_A          278 VWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI-SGH-NKGITALTV-NP  349 (615)
T ss_dssp             EEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE-CCC-SSCEEEEET-TT
T ss_pred             EEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE-eCC-CCCEEEEEe-cC
Confidence            9999999888777766    3567788886 8999999999999999999998887776 567 888999988 65

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=247.21  Aligned_cols=246  Identities=9%  Similarity=0.037  Sum_probs=192.0

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      -...|.+++|+||   +.++|.++      .|++++  +  +..         ...+.+|...|.+++|+|+|       
T Consensus        14 ~~~~v~sv~~SpD---G~~iASas------~D~TV~--d--~~~---------~~~l~gh~~~v~~V~FsPdg-------   64 (588)
T 2j04_A           14 FEDWKNNLTWARD---GTLYLTTF------PDISIG--Q--PKY---------AKDINCNSKNLFHVKEFPLE-------   64 (588)
T ss_dssp             CSSSSCCEEECTT---SCEEEECS------SSEEEE--E--ECC---------CSCCSSBGGGTEEEEEECCC-------
T ss_pred             hhccEEEEEECCC---CCEEEEEc------CCceee--c--ccc---------cceecCCCccEEEEEECCCC-------
Confidence            3567899999999   78999876      555666  2  221         12347899999999999999       


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCc-----cE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-----SV  157 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-----~i  157 (301)
                      .++.+.+|+.+...         .....+...|.+++|||+|++||+++.||.|++||..+  .+..+. |+.     .+
T Consensus        65 ~~~~~~~~~~~~~~---------~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv  132 (588)
T 2j04_A           65 FENKLDFELAQQNG---------LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY  132 (588)
T ss_dssp             CCCTTTTSCCCSSC---------SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred             CcceEEEEeCCCce---------EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence            56666666543322         12223568899999999999999999999999999544  444444 544     49


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEeCCCCce-------EEEEe---ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVA-------WTFLT---RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (301)
                      .+++|+|||++|++++.||+|++||+.++..       +..+.   ..|...|.+++|+|+| .      ++++.|+.|+
T Consensus       133 ~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-L------aass~D~tVr  205 (588)
T 2j04_A          133 HCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-L------VAALSNNSVF  205 (588)
T ss_dssp             EEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-E------EEEETTCCEE
T ss_pred             EEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-E------EEEeCCCeEE
Confidence            9999999999999999999999999998753       56653   2345689999999998 4      5667799999


Q ss_pred             EEEccCceEe---eee-eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEE--ccCCC
Q 022184          228 VYDISTWNKI---GHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF--CPTQR  301 (301)
Q Consensus       228 ~~d~~~~~~~---~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~--spdg~  301 (301)
                      +||+.+.+..   ..+ ..|...|.+++|+  |+.||+++ ++.|++||+.+++..... .+| ...|.+++|  +|||+
T Consensus       206 lWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-~gh-~~~V~~va~~~s~d~~  280 (588)
T 2j04_A          206 SMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-TGS-LENFHIIPLNHEKEST  280 (588)
T ss_dssp             EECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-CSC-CSCCCEEEETTCSSCE
T ss_pred             EEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-cCC-CceEEEEEeeeCCCCC
Confidence            9999887632   344 3677899999999  68899887 699999999998875443 368 899999999  99873

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.5e-35  Score=244.35  Aligned_cols=254  Identities=14%  Similarity=0.043  Sum_probs=187.8

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ..++|+|++|+|.  +..++++|+      .|+++++|++.......      ......+...+.+++|+|++++|++++
T Consensus       163 H~~~V~~l~f~p~--~~~~l~s~s------~D~~v~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~g~  228 (435)
T 4e54_B          163 AGGSITGLKFNPL--NTNQFYASS------MEGTTRLQDFKGNILRV------FASSDTINIWFCSLDVSASSRMVVTGD  228 (435)
T ss_dssp             SSCCCCEEEECSS--CTTEEEEEC------SSSCEEEEETTSCEEEE------EECCSSCSCCCCCEEEETTTTEEEEEC
T ss_pred             CCCCEEEEEEeCC--CCCEEEEEe------CCCEEEEeeccCCceeE------EeccCCCCccEEEEEECCCCCEEEEEe
Confidence            4678999999963  256777765      67888999886432111      112234456788999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC-EEEEeecCCeEEEEeCCCcceecc---cccCCccEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILD---EPKAHKSVL  158 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~~~~---~~~~~~~i~  158 (301)
                      .||.|++||++....        .....|...|.+++|+|++. +|++++.|+.|++||+++.+....   ...|...|+
T Consensus       229 ~dg~i~~wd~~~~~~--------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~  300 (435)
T 4e54_B          229 NVGNVILLNMDGKEL--------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN  300 (435)
T ss_dssp             SSSBEEEEESSSCBC--------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEE
T ss_pred             CCCcEeeeccCccee--------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccccc
Confidence            999999999875432        22334778999999999876 688999999999999987664333   346778999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC-----CeeEEEEccCCCcceEE-------EEEEeCCcceE
Q 022184          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-----KIELCRFSKDGTKPFLF-------CTVQRGDKALL  226 (301)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~-------~~~~~~~~~~i  226 (301)
                      +++|+|++++|++++.|+.|++||++++.....+..+...     .+....|+|++..+...       .+..+..++.|
T Consensus       301 ~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i  380 (435)
T 4e54_B          301 AACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTI  380 (435)
T ss_dssp             ECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCE
T ss_pred             ceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEE
Confidence            9999999999999999999999999998887776543221     13345666666541100       01223345689


Q ss_pred             EEEEccCceEeeeee-ccCCCcEEE-EEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184          227 AVYDISTWNKIGHKR-LLRKPASVL-SISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       227 ~~~d~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                      ++||..+++.+..+. .|...|.++ +|+|+|++|++|+ |+.|+||++++++..
T Consensus       381 ~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          381 DVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             EEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            999999998876654 566778877 6999999999876 789999999988653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.3e-34  Score=250.53  Aligned_cols=272  Identities=14%  Similarity=0.059  Sum_probs=218.5

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCc-ceEEEECC--CCCeEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNP--SGDDFV   79 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~--~~~~l~   79 (301)
                      ..+.|++++|+|+   ++++++++       ++.+.+|+++....    .......+.+|.+. |.+++|+|  ++++|+
T Consensus        17 ~~~~v~~~~~spd---g~~l~~~~-------~~~v~v~~~~~~~~----~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~   82 (615)
T 1pgu_A           17 QRNFTTHLSYDPT---TNAIAYPC-------GKSAFVRCLDDGDS----KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC   82 (615)
T ss_dssp             CTTCCCCCEEETT---TTEEEEEE-------TTEEEEEECCSSCC----SSCSEEEECTTTTSCEEEEEECSSTTCCEEE
T ss_pred             ccCceeEEEECCC---CCEEEEec-------CCeEEEEECCCCCC----ccccceEEecCCCceEEEEEECcCCCCCEEE
Confidence            3578999999988   66777754       45678998874311    01224567899999 99999999  999999


Q ss_pred             EEecCCcEEEEEEcCCccccccccc-cCCCCCCCCCeeEEEEeeCCCEEEEeecC----CeEEEEeCCCcceecccccCC
Q 022184           80 CSTTNGGCKLFEVYGGATDINLLAK-KMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEPKAH  154 (301)
Q Consensus        80 ~~~~d~~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~~  154 (301)
                      +++.||.|++||+.++......... ......|...|.+++|+|++++|++++.+    +.|++||  .++....+..|.
T Consensus        83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~  160 (615)
T 1pgu_A           83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS  160 (615)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCS
T ss_pred             EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCC
Confidence            9999999999999754110000000 01111367889999999999999999987    6888888  566677788888


Q ss_pred             ccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCC--CeeEEEEccC-CCcceEEEEEEeCCcceEEEEE
Q 022184          155 KSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDE--KIELCRFSKD-GTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       155 ~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                      ..|.+++|+|+++ .+++++.|+.|++||+++++.+..+..+...  .+.+++|+|+ ++.     +++++.|+.|++||
T Consensus       161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----l~~~~~dg~i~vwd  235 (615)
T 1pgu_A          161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF-----VITVGSDRKISCFD  235 (615)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE-----EEEEETTCCEEEEE
T ss_pred             ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCE-----EEEEeCCCeEEEEE
Confidence            9999999999998 8999999999999999999998888765431  6999999999 887     78889999999999


Q ss_pred             ccCceEeeee-e---ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccc---ccCccEEEEEEc
Q 022184          231 ISTWNKIGHK-R---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL---HLGTSIALVEFC  297 (301)
Q Consensus       231 ~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~---~~~~~v~~~~~s  297 (301)
                      +++++.+..+ .   .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+...   + ...+.++.|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~  307 (615)
T 1pgu_A          236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL-GNQQVGVVAT  307 (615)
T ss_dssp             TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG-GGCEEEEEEE
T ss_pred             CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcc-cCceeEEEeC
Confidence            9999988877 5   788999999999 9999999999999999999999877765321   2 3567777774

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4e-36  Score=280.69  Aligned_cols=262  Identities=17%  Similarity=0.184  Sum_probs=225.6

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..++.|++|+|+   +.++++|+      .++.+.+|+......        ...+.+|...|.+++|+|++++|++++.
T Consensus       961 ~~~i~~~~~sp~---g~~l~~g~------~~g~i~i~d~~~~~~--------~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1023 (1249)
T 3sfz_A          961 EAQVSCCCLSPH---LEYVAFGD------EDGAIKIIELPNNRV--------FSSGVGHKKAVRHIQFTADGKTLISSSE 1023 (1249)
T ss_dssp             CSCEEEEEECTT---SSEEEEEE------TTSCCEEEETTTTSC--------EEECCCCSSCCCCEEECSSSSCEEEECS
T ss_pred             cCcEEEEEEcCC---CCEEEEEc------CCCCEEEEEcCCCce--------eeecccCCCceEEEEECCCCCEEEEEcC
Confidence            467999999988   67888876      566778988764331        2346789999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      |+.|++|++.+++.        .....|...+.++.|+|++ .+++++.|+.|++||+.+++....+..|...|.+++|+
T Consensus      1024 dg~i~vwd~~~~~~--------~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s 1094 (1249)
T 3sfz_A         1024 DSVIQVWNWQTGDY--------VFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1094 (1249)
T ss_dssp             SSBEEEEETTTTEE--------ECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEEC
T ss_pred             CCEEEEEECCCCce--------EEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEEC
Confidence            99999999988764        2233577899999999966 57888999999999999999888888899999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee---
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---  240 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---  240 (301)
                      |+++++++++.|+.|++||+.+++.+..+..|. ..|.+++|+|+++.     +++++.|+.|++||+.+++.+..+   
T Consensus      1095 ~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~-~~v~~~~~s~dg~~-----lat~~~dg~i~vwd~~~~~~~~~~~~~ 1168 (1249)
T 3sfz_A         1095 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHN-GCVRCSAFSLDGIL-----LATGDDNGEIRIWNVSDGQLLHSCAPI 1168 (1249)
T ss_dssp             SSSSSCEEECCSSCCCEECSSSSSCSBCCCCCS-SCEEEEEECSSSSE-----EEEEETTSCCCEEESSSSCCCCCCCCC
T ss_pred             CCCCEEEEEcCCCcEEEEECCCcceeeeeccCC-CcEEEEEECCCCCE-----EEEEeCCCEEEEEECCCCceEEEeccc
Confidence            999999999999999999999998887777654 47999999999997     788999999999999998876554   


Q ss_pred             ------eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          241 ------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       241 ------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                            ..|...|++++|+||+++|++++  |.|++||+.+++.+..+ ..| ...|++++|+|||+
T Consensus      1169 ~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~-~~~-~~~i~~~~~s~dg~ 1231 (1249)
T 3sfz_A         1169 SVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTF-YTN-GTNLKKIHVSPDFR 1231 (1249)
T ss_dssp             C-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCC-CCS-SCCCCCCEECSSSC
T ss_pred             cccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeee-ecc-CCcccEEEECCCCC
Confidence                  56788999999999999999886  89999999999988776 567 88899999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-34  Score=227.83  Aligned_cols=243  Identities=10%  Similarity=0.125  Sum_probs=200.4

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..+|.+++|+|+   ..++++|+      .++.+++|++.....     ......+.+|...|.+++|  ++++|++++.
T Consensus        59 ~~~v~~~~~~~~---~~~l~~~~------~dg~i~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~  122 (313)
T 3odt_A           59 QGFLNSVCYDSE---KELLLFGG------KDTMINGVPLFATSG-----EDPLYTLIGHQGNVCSLSF--QDGVVISGSW  122 (313)
T ss_dssp             SSCEEEEEEETT---TTEEEEEE------TTSCEEEEETTCCTT-----SCC-CEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             CccEEEEEECCC---CCEEEEec------CCCeEEEEEeeecCC-----CCcccchhhcccCEEEEEe--cCCEEEEEeC
Confidence            578999999987   67888766      667789998765431     1223456889999999999  5789999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceeccccc-CCccEEEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPK-AHKSVLDMD  161 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~  161 (301)
                      |+.|++||  ......       ....|...+.++.|+| +++++++++.|+.|++||.  .+....+.. +...+.+++
T Consensus       123 d~~i~~~d--~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~  191 (313)
T 3odt_A          123 DKTAKVWK--EGSLVY-------NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLA  191 (313)
T ss_dssp             TSEEEEEE--TTEEEE-------EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEE
T ss_pred             CCCEEEEc--CCcEEE-------ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEE
Confidence            99999999  222211       1123678899999999 9999999999999999994  344444555 678999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      |+|++. +++++.|+.|++||+++++.+..+..+. ..+.+++|+|++.      +++++.|+.|++||+++++.+..+.
T Consensus       192 ~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~------l~~~~~dg~v~iwd~~~~~~~~~~~  263 (313)
T 3odt_A          192 VVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE-SFVYCIKLLPNGD------IVSCGEDRTVRIWSKENGSLKQVIT  263 (313)
T ss_dssp             EEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTTSC------EEEEETTSEEEEECTTTCCEEEEEE
T ss_pred             EcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC-ceEEEEEEecCCC------EEEEecCCEEEEEECCCCceeEEEe
Confidence            999998 9999999999999999999998887654 5799999999994      5788999999999999999998899


Q ss_pred             ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      .+...+.+++|+|+++ +++++.||.|++|++++++.....
T Consensus       264 ~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          264 LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence            9999999999999998 667899999999999988766543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=257.01  Aligned_cols=233  Identities=13%  Similarity=0.115  Sum_probs=190.3

Q ss_pred             ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC--CCEEEEeecCC
Q 022184           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDG  134 (301)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg  134 (301)
                      ..+.+|.+.|++++|+|++++|++++.||.|++|++.+......     .....|..+|.+++|+|+  +++|++|+.||
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~-----~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg   77 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI-----DTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE-----EEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc-----eeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence            35789999999999999999999999999999999985432111     111247789999999997  99999999999


Q ss_pred             eEEEEeCCCcc--eecccccCCccEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCce--EEEEeecCCCCeeEEEEcc-
Q 022184          135 HLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSK-  207 (301)
Q Consensus       135 ~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~-  207 (301)
                      .|++||+.+++  ....+..|...|.+++|+|+  ++++++++.||.|++||++++..  ...+. .+...+.+++|+| 
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~  156 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPA  156 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCC
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCc
Confidence            99999998876  56667778889999999999  99999999999999999988733  23333 3455799999999 


Q ss_pred             ------------CCCcceEEEEEEeCCcceEEEEEccCc----eEeeeeeccCCCcEEEEEcCC---CCEEEEeeCCCcE
Q 022184          208 ------------DGTKPFLFCTVQRGDKALLAVYDISTW----NKIGHKRLLRKPASVLSISLD---GKYLAMGSKDGDI  268 (301)
Q Consensus       208 ------------~~~~~~~~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i  268 (301)
                                  ++..     +++++.|+.|++||++++    .....+..|...|.+++|+|+   +++|++++.||.|
T Consensus       157 ~~~~~~~~~~~~d~~~-----l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I  231 (753)
T 3jro_A          157 TIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC  231 (753)
T ss_dssp             C---------CGGGCC-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred             ccccccccccCCCCCE-----EEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence                        4676     788999999999999876    455667788999999999999   9999999999999


Q ss_pred             EEEeCCCceee----ccccccccCccEEEEEEccCCC
Q 022184          269 CVVDVKKMEIN----HWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       269 ~i~~~~~~~~~----~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++||+.+++..    ......| ...|++++|+|+|+
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~  267 (753)
T 3jro_A          232 IIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGN  267 (753)
T ss_dssp             EEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTC
T ss_pred             EEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCC
Confidence            99999986421    1111346 78999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-35  Score=247.07  Aligned_cols=219  Identities=9%  Similarity=0.069  Sum_probs=177.7

Q ss_pred             ccc-cccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           57 YVF-DESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        57 ~~~-~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ..+ .+|.+.|.+++|+| ++++|++++.|++|++||+.+.+.....  .......|...|.+++|+|++++|++++.||
T Consensus        56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  133 (437)
T 3gre_A           56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY--SSSLTYDCSSTVTQITMIPNFDAFAVSSKDG  133 (437)
T ss_dssp             EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC--SCSEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc--ceeeeccCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            345 88999999999999 9999999999999999999762211100  0011224788999999999999999999999


Q ss_pred             eEEEEeCC---Ccceecccc----------c--CCccEEEEE--ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec-C
Q 022184          135 HLRIMHWP---SLRIILDEP----------K--AHKSVLDMD--FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-S  196 (301)
Q Consensus       135 ~i~v~d~~---~~~~~~~~~----------~--~~~~i~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~  196 (301)
                      .|++||+.   +++......          .  +...+.++.  ++|++.+|++++.|+.|++||+++++.+..+..+ +
T Consensus       134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h  213 (437)
T 3gre_A          134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR  213 (437)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred             EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence            99999995   443332211          1  344566666  5678999999999999999999999999998863 4


Q ss_pred             CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee-ccCCCcEEEEEc----CCCCEEEEeeCCCcEEEE
Q 022184          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSIS----LDGKYLAMGSKDGDICVV  271 (301)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s----~~~~~l~~~~~d~~i~i~  271 (301)
                      ...|.+++|+|++..     +++++.|+.|++||+++++.+..+. .+...|.+++|+    |++++|++++.|+.|++|
T Consensus       214 ~~~v~~~~~s~~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw  288 (437)
T 3gre_A          214 HGAVSSICIDEECCV-----LILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW  288 (437)
T ss_dssp             GCCEEEEEECTTSCE-----EEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred             CCceEEEEECCCCCE-----EEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence            557999999999997     7899999999999999998887765 667789999665    568899999999999999


Q ss_pred             eCCCceeeccc
Q 022184          272 DVKKMEINHWS  282 (301)
Q Consensus       272 ~~~~~~~~~~~  282 (301)
                      |+++++.+..+
T Consensus       289 d~~~~~~~~~~  299 (437)
T 3gre_A          289 NFVKGHCQYAF  299 (437)
T ss_dssp             ETTTTEEEEEE
T ss_pred             EcCCCcEEEEE
Confidence            99998876655

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.3e-35  Score=242.08  Aligned_cols=255  Identities=10%  Similarity=0.120  Sum_probs=201.7

Q ss_pred             CCceeEEEeeee-cCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC-CeEEE
Q 022184            3 GGGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~-~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~   80 (301)
                      ...+|++++|+| +   ..++++|+      .|+.+++|++....... ........+.+|...|.+++|+|++ ++|++
T Consensus        80 h~~~V~~~~~~p~~---~~~l~s~s------~dg~v~vw~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s  149 (402)
T 2aq5_A           80 HTAPVLDIAWCPHN---DNVIASGS------EDCTVMVWEIPDGGLVL-PLREPVITLEGHTKRVGIVAWHPTAQNVLLS  149 (402)
T ss_dssp             CSSCEEEEEECTTC---TTEEEEEE------TTSEEEEEECCTTCCSS-CBCSCSEEEECCSSCEEEEEECSSBTTEEEE
T ss_pred             CCCCEEEEEeCCCC---CCEEEEEe------CCCeEEEEEccCCCCcc-ccCCceEEecCCCCeEEEEEECcCCCCEEEE
Confidence            467899999997 4   67888866      67788999987653211 0112234578999999999999998 69999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc-ccCCcc-EE
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PKAHKS-VL  158 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~-i~  158 (301)
                      ++.|+.|++||+.+++....+.     ...|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..|.+. +.
T Consensus       150 ~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  224 (402)
T 2aq5_A          150 AGCDNVILVWDVGTGAAVLTLG-----PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPV  224 (402)
T ss_dssp             EETTSCEEEEETTTTEEEEEEC-----TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCC
T ss_pred             EcCCCEEEEEECCCCCccEEEe-----cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcce
Confidence            9999999999998876532221     1247789999999999999999999999999999999887777 566654 89


Q ss_pred             EEEecCCCcEEEEE---eCCCcEEEEeCCCCce-EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184          159 DMDFSLDSEFLATT---STDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (301)
Q Consensus       159 ~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  234 (301)
                      +++|+|++++|+++   +.|+.|++||+++++. +......+...+.+++|+|+++.+    +++++.|+.|++||+.++
T Consensus       225 ~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l----~~~g~~dg~i~i~d~~~~  300 (402)
T 2aq5_A          225 HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV----YLCGKGDSSIRYFEITSE  300 (402)
T ss_dssp             EEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE----EEEETTCSCEEEEEECSS
T ss_pred             EEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE----EEEEcCCCeEEEEEecCC
Confidence            99999999999999   7899999999998764 334443445569999999999972    346678999999999987


Q ss_pred             eE-eeeeec--cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184          235 NK-IGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       235 ~~-~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~  278 (301)
                      +. +..+..  +...+.+++|+|++.++++  .++.+++|++.+++.
T Consensus       301 ~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          301 APFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             TTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             CcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            73 333433  4588999999999998775  456899999987654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=233.77  Aligned_cols=231  Identities=13%  Similarity=0.118  Sum_probs=186.6

Q ss_pred             cCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccc------cC
Q 022184           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAK------KM  106 (301)
Q Consensus        34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~------~~  106 (301)
                      +..+++|.++....        ...+.+|.+.|.+++|+| ++++|++++.||.|++||+.+..........      ..
T Consensus        22 ~~~~~v~~~~~~~~--------~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   93 (408)
T 4a11_B           22 ESTRRVLGLELNKD--------RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRD   93 (408)
T ss_dssp             HHHHHHHTEEECTT--------EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTT
T ss_pred             cCcceeeccccCcc--------eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccc
Confidence            44567777654332        234678999999999999 9999999999999999999887653332211      01


Q ss_pred             CCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCC---CcEEEEEeCCCcEEEEe
Q 022184          107 PPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWK  182 (301)
Q Consensus       107 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d  182 (301)
                      ....|...|.+++|+| ++++|++++.||.|++||+.+++....+. +...+.++.|+|.   +.++++++.|+.|++||
T Consensus        94 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           94 HPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             CTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             ccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            1123778999999999 78899999999999999999988766554 6678999999984   44999999999999999


Q ss_pred             CCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Eeeee---------------eccCCC
Q 022184          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHK---------------RLLRKP  246 (301)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~---------------~~~~~~  246 (301)
                      +++++.+..+..+. ..+.+++|+|+++++    +++++.|+.|++||+++.. .+..+               ..|...
T Consensus       173 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
T 4a11_B          173 LKSGSCSHILQGHR-QEILAVSWSPRYDYI----LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK  247 (408)
T ss_dssp             SSSSCCCEEECCCC-SCEEEEEECSSCTTE----EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSC
T ss_pred             CCCcceeeeecCCC-CcEEEEEECCCCCcE----EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCc
Confidence            99999888887654 479999999999852    5788999999999998765 22222               467788


Q ss_pred             cEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184          247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       247 v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~  278 (301)
                      |.+++|+|++++|++++.|+.|++||+.+++.
T Consensus       248 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence            99999999999999999999999999987543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-34  Score=239.23  Aligned_cols=198  Identities=14%  Similarity=0.118  Sum_probs=157.9

Q ss_pred             ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEe
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d  140 (301)
                      .|.+.|.+++|+|+|++||+++.||.|++|+.++  . ...... .. .-....+.+++|||||++|++|+.||+|++||
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~-l~~l~~-~~-~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--M-LTNLDS-KG-NLSSRTYHCFEWNPIESSIVVGNEDGELQFFS  157 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--E-EEECCC-SS-CSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--e-eeeccC-CC-ccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence            4588899999999999999999999999999543  1 110000 00 00123699999999999999999999999999


Q ss_pred             CCCcce-------eccc----ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce---EEEEeecCCCCeeEEEEc
Q 022184          141 WPSLRI-------ILDE----PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFS  206 (301)
Q Consensus       141 ~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~  206 (301)
                      +.++..       +..+    .+|...|.+++|+|||  +++++.|+.|++||+..++.   ...+..++...|.+++|+
T Consensus       158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs  235 (588)
T 2j04_A          158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV  235 (588)
T ss_dssp             CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred             CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence            988752       3343    4566799999999999  88889999999999988773   345643455679999999


Q ss_pred             cCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEE--cCCCCEEEEeeCCCcEEEEeCC
Q 022184          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI--SLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                        +..     +++++ ++.|++||+.+++......+|...+..++|  +|++..+++++.||. ++|..+
T Consensus       236 --g~~-----LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          236 --DYK-----VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             --TTE-----EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             --CCE-----EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence              454     56665 689999999988874444479999999999  999999999999999 999874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.4e-33  Score=235.20  Aligned_cols=256  Identities=15%  Similarity=0.223  Sum_probs=212.5

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|++++|+++     ++++|+      .++.+++|++....        ....+.+|...|.++.|+  ++.+++++
T Consensus       158 h~~~v~~~~~~~~-----~l~s~~------~dg~i~vwd~~~~~--------~~~~~~~h~~~v~~~~~~--~~~l~s~s  216 (445)
T 2ovr_B          158 HTGGVWSSQMRDN-----IIISGS------TDRTLKVWNAETGE--------CIHTLYGHTSTVRCMHLH--EKRVVSGS  216 (445)
T ss_dssp             CSSCEEEEEEETT-----EEEEEE------TTSCEEEEETTTTE--------EEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             CCCCEEEEEecCC-----EEEEEe------CCCeEEEEECCcCc--------EEEEECCCCCcEEEEEec--CCEEEEEe
Confidence            4578899999833     777765      67788999886432        134567899999999995  67899999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.|++||+.+++....+       ..|...+.+++|  +++++++++.||.|++||+++++.+..+..|...|.+++|
T Consensus       217 ~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  287 (445)
T 2ovr_B          217 RDATLRVWDIETGQCLHVL-------MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF  287 (445)
T ss_dssp             TTSEEEEEESSSCCEEEEE-------ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEE-------cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence            9999999999877653222       236788999998  7889999999999999999999988888888899999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                        +++++++++.|+.|++||+++++.+..+..+. ..+.++.++  ++.     +++++.|+.|++||+++++.+..+..
T Consensus       288 --~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~--~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          288 --DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK--DNI-----LVSGNADSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             --CSSEEEEEETTSCEEEEETTTCCEEEEECCCC-SCEEEEEEE--TTE-----EEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             --CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc-ccEEEEEEe--CCE-----EEEEeCCCeEEEEECCCCcEEEEEcc
Confidence              78899999999999999999999998887654 457777764  454     68889999999999999988877775


Q ss_pred             ---cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc----ccccCccEEEEEEccCCC
Q 022184          243 ---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----RLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       243 ---~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----~~~~~~~v~~~~~spdg~  301 (301)
                         |...|.+++|+  +++|++++.||.|++||+.+++.+..+.    ..| .+.|++++|+|+|+
T Consensus       358 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~  420 (445)
T 2ovr_B          358 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS-GGVVWRIRASNTKL  420 (445)
T ss_dssp             TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG-TCEEEEEEECSSEE
T ss_pred             CCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCC-CceEEEEEecCCEE
Confidence               77889999995  5799999999999999999998777652    345 78999999999873

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.3e-33  Score=236.10  Aligned_cols=250  Identities=15%  Similarity=0.196  Sum_probs=207.8

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..+|+|++|.     +.++++|+      .++.+++|+.....        ....+.+|.+.|.+++|  ++++|++++.
T Consensus       133 ~~~v~~~~~d-----~~~l~~g~------~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l~~--~~~~l~sg~~  191 (435)
T 1p22_A          133 SKGVYCLQYD-----DQKIVSGL------RDNTIKIWDKNTLE--------CKRILTGHTGSVLCLQY--DERVIITGSS  191 (435)
T ss_dssp             CCCEEEEECC-----SSEEEEEE------SSSCEEEEESSSCC--------EEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred             CCcEEEEEEC-----CCEEEEEe------CCCeEEEEeCCCCe--------EEEEEcCCCCcEEEEEE--CCCEEEEEcC
Confidence            4568998883     45788766      67788999875432        23457789999999999  7889999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee---cccccCCccEEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLDM  160 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~i~~~  160 (301)
                      ||.|++||+.+++....+       ..|...|.+++|+  +..+++++.||.|++||+++++..   ..+..|...|.++
T Consensus       192 dg~i~vwd~~~~~~~~~~-------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  262 (435)
T 1p22_A          192 DSTVRVWDVNTGEMLNTL-------IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  262 (435)
T ss_dssp             TSCEEEEESSSCCEEEEE-------CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred             CCeEEEEECCCCcEEEEE-------cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEE
Confidence            999999999887653222       2367889999996  459999999999999999887654   4566788899999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      +|  +++++++++.|+.|++||+++++.+..+..+. ..+.++.|+  +..     +++++.|+.|++||+++++.+..+
T Consensus       263 ~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~--~~~-----l~~g~~dg~i~iwd~~~~~~~~~~  332 (435)
T 1p22_A          263 DF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-RGIACLQYR--DRL-----VVSGSSDNTIRLWDIECGACLRVL  332 (435)
T ss_dssp             EE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEEE--TTE-----EEEEETTSCEEEEETTTCCEEEEE
T ss_pred             Ee--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC-CcEEEEEeC--CCE-----EEEEeCCCeEEEEECCCCCEEEEE
Confidence            99  68899999999999999999999999888654 469999884  454     688999999999999999999999


Q ss_pred             eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce---------eeccccccccCccEEEEEEc
Q 022184          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---------INHWSKRLHLGTSIALVEFC  297 (301)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~---------~~~~~~~~~~~~~v~~~~~s  297 (301)
                      ..|...+.+++|  ++++|++|+.||.|++||+.+++         .+..+ ..| ...|.+++|.
T Consensus       333 ~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~l~~~  394 (435)
T 1p22_A          333 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEH-SGRVFRLQFD  394 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCC-SSCCCCEEEC
T ss_pred             eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-cCC-CCCeEEEEeC
Confidence            999999999999  78899999999999999997665         44444 568 8899999983

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-34  Score=255.30  Aligned_cols=224  Identities=10%  Similarity=0.058  Sum_probs=184.6

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEE
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  138 (301)
                      ..+|.+.|.+++|+|++++||+|+.||+|++|+....+..        ....|...|.+++|+| +++|++++.|+.|++
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--------~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~l   83 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--------IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYV   83 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--------EECSSCCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--------EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEE
Confidence            3589999999999999999999999999999998765431        1123678899999999 889999999999999


Q ss_pred             EeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE-E---------eecCCCCeeEEEEccC
Q 022184          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF-L---------TRNSDEKIELCRFSKD  208 (301)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~---------~~~~~~~v~~~~~~~~  208 (301)
                      ||+++++.+..+. +...|++++|+|++++|++++.||.|++||+++++.... +         ...+..+|.+++|+|+
T Consensus        84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           84 LSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             EETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             EECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            9999988876664 667899999999999999999999999999998875311 1         1224567999999997


Q ss_pred             CCcceEEEEEEeCCcceEEEEEccCceEeeeeecc------------------CCCcEEEEEcCCCCEEEEeeCCCcEEE
Q 022184          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------------------RKPASVLSISLDGKYLAMGSKDGDICV  270 (301)
Q Consensus       209 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~~~~~d~~i~i  270 (301)
                      +...    +++++.|+.| +||+++++.+..+..+                  ...|.+++|+|+|++|++++.|+.|++
T Consensus       163 ~~~~----l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l  237 (902)
T 2oaj_A          163 DIGT----VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF  237 (902)
T ss_dssp             EEEE----EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             CCCE----EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence            5321    6788999999 9999999887766544                  467999999999999999999999999


Q ss_pred             EeCCCceeecc--cc--c-------------cccCccEEEEEEcc
Q 022184          271 VDVKKMEINHW--SK--R-------------LHLGTSIALVEFCP  298 (301)
Q Consensus       271 ~~~~~~~~~~~--~~--~-------------~~~~~~v~~~~~sp  298 (301)
                      ||+++++.+..  +.  .             .| ..+|++++|+|
T Consensus       238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~-~~~V~~v~w~~  281 (902)
T 2oaj_A          238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTN-AAKISKVYWMC  281 (902)
T ss_dssp             EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSC-CCEEEEEEEEE
T ss_pred             EECCCCcEEEEEeecccccCCCCCcCCCCCccc-cCCeeEEEEEe
Confidence            99999876542  11  0             13 45799999964

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.9e-34  Score=240.73  Aligned_cols=232  Identities=11%  Similarity=0.063  Sum_probs=178.3

Q ss_pred             ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccc----cccccCCCCCCC------------CCeeEEEEeeCC
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN----LLAKKMPPLQDA------------GPQKCLSFSVDG  124 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~----~~~~~~~~~~~~------------~~v~~~~~s~~~  124 (301)
                      .|.+.|.+++|+|+|++|++|+.||.|++|++.+.+....    ..........|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            4678999999999999999999999999999987652000    000000111244            789999999998


Q ss_pred             --CEEEEeecCCeEEEEeCCCcceec---------------------------------------c-cccCCccEEEEEe
Q 022184          125 --SRFAAGGVDGHLRIMHWPSLRIIL---------------------------------------D-EPKAHKSVLDMDF  162 (301)
Q Consensus       125 --~~l~~~~~dg~i~v~d~~~~~~~~---------------------------------------~-~~~~~~~i~~~~~  162 (301)
                        ..|++++.|+.|++||+.+++...                                       . ...|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              799999999999999987644310                                       1 2467789999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCC-CceEEEE------eecCCCCeeEEEEccCC-CcceEEEEEEeCCcceEEEEEccCc
Q 022184          163 SLDSEFLATTSTDGSARIWKTED-GVAWTFL------TRNSDEKIELCRFSKDG-TKPFLFCTVQRGDKALLAVYDISTW  234 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~------~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~d~~~~  234 (301)
                      +|++++|+++ .|+.|++||++. ++....+      ...+...|.+++|+|++ ..     +++++.|+.|++||++++
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-----l~s~~~dg~i~iwd~~~~  259 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT-----FVYSSSKGTIRLCDMRAS  259 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE-----EEEEETTSCEEEEETTTC
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE-----EEEEeCCCeEEEEECcCC
Confidence            9999999998 799999999984 4444432      12345679999999998 65     788999999999999988


Q ss_pred             eE----eeeeeccCC------------CcEEEEEcCCCCEEEEeeCCCcEEEEeCCC-ceeeccccccccCcc-------
Q 022184          235 NK----IGHKRLLRK------------PASVLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLGTS-------  290 (301)
Q Consensus       235 ~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~-------  290 (301)
                      +.    ...+..+..            .|.+++|+|++++|++++. +.|++||+++ ++.+..+ ..| ...       
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~-~~~-~~~~~~l~~~  336 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY-QVH-EYLRSKLCSL  336 (447)
T ss_dssp             SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE-ESC-GGGTTTHHHH
T ss_pred             ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee-ecc-cccccccccc
Confidence            76    566666665            8999999999999999998 9999999997 6666655 445 321       


Q ss_pred             --------EEEEEEccCCC
Q 022184          291 --------IALVEFCPTQR  301 (301)
Q Consensus       291 --------v~~~~~spdg~  301 (301)
                              +..++|+|||+
T Consensus       337 ~~~~~i~~~~~~~~s~~~~  355 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDS  355 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSS
T ss_pred             ccccccccceEEEECCCCC
Confidence                    33599999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-34  Score=232.99  Aligned_cols=233  Identities=12%  Similarity=0.067  Sum_probs=175.5

Q ss_pred             ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccc
Q 022184           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (301)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~   98 (301)
                      ..++++|+      .|+.+++|++.......        .+.  ...|.++.|+|+   +++++.|++|++|+.......
T Consensus        48 ~~~l~sg~------~Dg~v~iwd~~~~~~~~--------~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~  108 (343)
T 3lrv_A           48 KWVCMCRC------EDGALHFTQLKDSKTIT--------TIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI  108 (343)
T ss_dssp             EEEEEEEE------ETTEEEEEEESSSSCEE--------EEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred             CCEEEEEC------CCCcEEEEECCCCcEEE--------EEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence            45677765      77888999987543211        111  456788888887   999999999999987643211


Q ss_pred             ccccccc---CCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCcceeccccc-CCccEEEEEecCCCcEEEEE
Q 022184           99 INLLAKK---MPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATT  172 (301)
Q Consensus        99 ~~~~~~~---~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~  172 (301)
                      .......   .....|..+|.+++|+|  +++++++++.||.|++||+++++....... +...+.+++|+|++.+|++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg  188 (343)
T 3lrv_A          109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY  188 (343)
T ss_dssp             EETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred             eecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence            1100000   11123557899999999  999999999999999999999887554433 34579999999999999999


Q ss_pred             eCCCcEEEEeCCCCceE-EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec---cCCCc-
Q 022184          173 STDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL---LRKPA-  247 (301)
Q Consensus       173 ~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~v-  247 (301)
                      +.|+.|++||+++++.+ ..+...|..+|.+++|+|++.+     +++++ ++.|++||+++.+.+..+..   +...+ 
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~-----l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~  262 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW-----MVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG  262 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE-----EEEEE-SSBEEEEETTSSTTCBSSCCCBC-----C
T ss_pred             cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE-----EEEEe-CCeEEEEEcCCCCcceeeccccccccccc
Confidence            99999999999999887 6776635568999999999997     56666 44999999998876544433   22333 


Q ss_pred             -EEEEEcCCCCEEEEeeC-CCcEEEEeCCCc
Q 022184          248 -SVLSISLDGKYLAMGSK-DGDICVVDVKKM  276 (301)
Q Consensus       248 -~~~~~s~~~~~l~~~~~-d~~i~i~~~~~~  276 (301)
                       .+++|+|++++|++++. |+.|++|++...
T Consensus       263 ~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          263 TVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence             36999999999999988 999999998654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-33  Score=249.70  Aligned_cols=238  Identities=8%  Similarity=0.040  Sum_probs=189.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|+|+   +.++|+|+      .|+.|++|+.....  .      .. ...|...|.+++|+| +++|++++
T Consensus        16 h~~~V~~lafspd---g~~lAsgs------~Dg~I~lw~~~~~~--~------~~-~~~~~~~V~~l~fsp-g~~L~S~s   76 (902)
T 2oaj_A           16 MSSKPIAAAFDFT---QNLLAIAT------VTGEVHIYGQQQVE--V------VI-KLEDRSAIKEMRFVK-GIYLVVIN   76 (902)
T ss_dssp             CSSCEEEEEEETT---TTEEEEEE------TTSEEEEECSTTCE--E------EE-ECSSCCCEEEEEEET-TTEEEEEE
T ss_pred             CCCCcEEEEECCC---CCEEEEEe------CCCEEEEEeCCCcE--E------EE-EcCCCCCEEEEEEcC-CCEEEEEE
Confidence            3578999999988   67899877      66778998764322  1      11 224788999999999 88999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee-----------cccc
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----------LDEP  151 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~-----------~~~~  151 (301)
                      .|++|++||+++++....+        .+...|.+++|+|++++|++|+.||.|++||+++++..           ....
T Consensus        77 ~D~~v~lWd~~~~~~~~~~--------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~  148 (902)
T 2oaj_A           77 AKDTVYVLSLYSQKVLTTV--------FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA  148 (902)
T ss_dssp             TTCEEEEEETTTCSEEEEE--------ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred             CcCeEEEEECCCCcEEEEE--------cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc
Confidence            9999999999887642222        25578999999999999999999999999999887653           2345


Q ss_pred             cCCccEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeec-----------------CCCCeeEEEEccCCCcce
Q 022184          152 KAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRN-----------------SDEKIELCRFSKDGTKPF  213 (301)
Q Consensus       152 ~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~  213 (301)
                      .|.++|.+++|+|+ +..|++++.|+.| +||+++++.+..+..+                 +...|.+++|+|+|.+  
T Consensus       149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~--  225 (902)
T 2oaj_A          149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH--  225 (902)
T ss_dssp             SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE--
T ss_pred             cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE--
Confidence            67789999999996 4689999999999 9999999988887644                 1346999999999997  


Q ss_pred             EEEEEEeCCcceEEEEEccCceEeee--e---ec-------------cCCCcEEEEEc----CCC-CEEEEeeCC-----
Q 022184          214 LFCTVQRGDKALLAVYDISTWNKIGH--K---RL-------------LRKPASVLSIS----LDG-KYLAMGSKD-----  265 (301)
Q Consensus       214 ~~~~~~~~~~~~i~~~d~~~~~~~~~--~---~~-------------~~~~v~~~~~s----~~~-~~l~~~~~d-----  265 (301)
                         +++++.|+.|++||+++++++..  +   ..             +...|.+++|+    |++ .+|++|+.|     
T Consensus       226 ---lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~  302 (902)
T 2oaj_A          226 ---IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDN  302 (902)
T ss_dssp             ---EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSC
T ss_pred             ---EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCC
Confidence               79999999999999998877542  1   11             23469999995    443 567777665     


Q ss_pred             CcEEEEeC
Q 022184          266 GDICVVDV  273 (301)
Q Consensus       266 ~~i~i~~~  273 (301)
                      ..+.+|++
T Consensus       303 ~~v~~~~~  310 (902)
T 2oaj_A          303 QSLTMIDL  310 (902)
T ss_dssp             CCEEEEEE
T ss_pred             ceEEEEec
Confidence            37889985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9.3e-32  Score=225.51  Aligned_cols=249  Identities=16%  Similarity=0.242  Sum_probs=208.6

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      +.|+++.     ++++++|+      .++.+++|++....        ....+.+|.+.|.+++|+  ++.+++++.|++
T Consensus       122 ~~~~~~~-----g~~l~sg~------~dg~i~vwd~~~~~--------~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~  180 (445)
T 2ovr_B          122 ITCLQFC-----GNRIVSGS------DDNTLKVWSAVTGK--------CLRTLVGHTGGVWSSQMR--DNIIISGSTDRT  180 (445)
T ss_dssp             EEEEEEE-----TTEEEEEE------TTSCEEEEETTTCC--------EEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred             EEEEEEc-----CCEEEEEE------CCCcEEEEECCCCc--------EEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence            5666554     35787766      67888999886432        234577999999999997  679999999999


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCC
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS  166 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  166 (301)
                      |++||+.+++....+       ..|...|.++.|+  ++.+++++.||.|++||+++++.+..+..|...|.+++|  ++
T Consensus       181 i~vwd~~~~~~~~~~-------~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~  249 (445)
T 2ovr_B          181 LKVWNAETGECIHTL-------YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG  249 (445)
T ss_dssp             EEEEETTTTEEEEEE-------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred             EEEEECCcCcEEEEE-------CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence            999999887653222       2467889999985  668999999999999999999988888888899999999  68


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCC
Q 022184          167 EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP  246 (301)
Q Consensus       167 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  246 (301)
                      +++++++.|+.|++||+++++.+..+..+. ..+.++.|  ++..     +++++.|+.|++||+++++.+..+..|...
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~-----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  321 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETCLHTLQGHT-NRVYSLQF--DGIH-----VVSGSLDTSIRVWDVETGNCIHTLTGHQSL  321 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCS-SCEEEEEE--CSSE-----EEEEETTSCEEEEETTTCCEEEEECCCCSC
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEecCCC-CceEEEEE--CCCE-----EEEEeCCCeEEEEECCCCCEEEEEcCCccc
Confidence            899999999999999999999988887654 46999999  6666     688899999999999999999888888888


Q ss_pred             cEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccc--cccCccEEEEEEcc
Q 022184          247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSIALVEFCP  298 (301)
Q Consensus       247 v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~~~~~v~~~~~sp  298 (301)
                      +.++.+  +++++++++.||.|++||+++++.+..+..  .| ...|.+++|++
T Consensus       322 v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~  372 (445)
T 2ovr_B          322 TSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFNK  372 (445)
T ss_dssp             EEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEECS
T ss_pred             EEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEECC
Confidence            888777  467999999999999999999988776632  36 78999999975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.4e-33  Score=232.61  Aligned_cols=228  Identities=10%  Similarity=0.100  Sum_probs=165.4

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--------CCCeEEEEecCCcEEEEEEcCCccccccccc
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--------SGDDFVCSTTNGGCKLFEVYGGATDINLLAK  104 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~  104 (301)
                      .|+++++|+.+......   ......+.+|.+.|++++|+|        ++++||+++.|++|+|||+.++....     
T Consensus       109 ~d~~v~lw~~~~~~~~~---~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~-----  180 (393)
T 4gq1_A          109 QDNTVRLIITKNETIIT---QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL-----  180 (393)
T ss_dssp             TTSCEEEEEEETTEEEE---EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE-----
T ss_pred             CCCcEEEEECCCCccce---eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee-----
Confidence            78889999987654221   112346789999999999998        78999999999999999998765422     


Q ss_pred             cCCCCCCCCCeeEEEEeeCC-CEEEEeecCCeEEEEeCCCcceecc-------------------------cccCCccEE
Q 022184          105 KMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILD-------------------------EPKAHKSVL  158 (301)
Q Consensus       105 ~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~-------------------------~~~~~~~i~  158 (301)
                        ....|..++.+++|+|++ ++|++++.|++|++||+++++....                         ...|...+.
T Consensus       181 --~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~  258 (393)
T 4gq1_A          181 --AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA  258 (393)
T ss_dssp             --EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred             --eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence              223467899999999976 5799999999999999987654321                         123456788


Q ss_pred             EEEec-CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC-----------------CCeeEEEEccCCCcceEEEEEEe
Q 022184          159 DMDFS-LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----------------EKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       159 ~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      ++.|. |+++.|++++.|+++++||+..++....+..+..                 .......|+|.....+   ++++
T Consensus       259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~sg  335 (393)
T 4gq1_A          259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF---ATAH  335 (393)
T ss_dssp             EEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEE---EEEE
T ss_pred             eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEE---EEEE
Confidence            89986 7999999999999999999988766555433221                 0112233444333222   5788


Q ss_pred             CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      +.|+.|++||..+++.......|..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus       336 s~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          336 SQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             TTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             CCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            9999999999999988878888889999999999999999998766 6666553

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.2e-32  Score=220.36  Aligned_cols=234  Identities=10%  Similarity=0.120  Sum_probs=194.8

Q ss_pred             CCceeEEEeeeecCCCcc-EEEecCCccccCCcCceeEeee-CCCcceeeeCCceeccccc--cCCcceEEEECCCCCeE
Q 022184            3 GGGTVTCGSWIKRPENVN-LVVLGKSSRASSSPSVLEIFSF-DPKTTSVYTSPLVTYVFDE--SEGDPMTIAVNPSGDDF   78 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~-~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l   78 (301)
                      ...+|++++|+|+   +. ++++|+      .++.+++|++ .....         ..+.+  |...|.+++|+| +++|
T Consensus        55 ~~~~v~~~~~~~~---~~~~l~~~~------~dg~i~~wd~~~~~~~---------~~~~~~~~~~~v~~l~~~~-~~~l  115 (342)
T 1yfq_A           55 YKHPLLCCNFIDN---TDLQIYVGT------VQGEILKVDLIGSPSF---------QALTNNEANLGICRICKYG-DDKL  115 (342)
T ss_dssp             CSSCEEEEEEEES---SSEEEEEEE------TTSCEEEECSSSSSSE---------EECBSCCCCSCEEEEEEET-TTEE
T ss_pred             cCCceEEEEECCC---CCcEEEEEc------CCCeEEEEEeccCCce---------EeccccCCCCceEEEEeCC-CCEE
Confidence            3578999999988   67 777765      5677899987 54431         34567  999999999999 9999


Q ss_pred             EEEecCCcEEEEEEcC---------CccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC-cce--
Q 022184           79 VCSTTNGGCKLFEVYG---------GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRI--  146 (301)
Q Consensus        79 ~~~~~d~~i~~w~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~--  146 (301)
                      ++++.|+.|++||+.+         .+.        ...+.+...+.+++|+|++  +++++.|+.|++||+++ +..  
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~  185 (342)
T 1yfq_A          116 IAASWDGLIEVIDPRNYGDGVIAVKNLN--------SNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG  185 (342)
T ss_dssp             EEEETTSEEEEECHHHHTTBCEEEEESC--------SSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC
T ss_pred             EEEcCCCeEEEEcccccccccccccCCe--------eeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccc
Confidence            9999999999999986         332        3334477899999999887  99999999999999987 543  


Q ss_pred             ecccccCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCC------ceEEEEeecCC--------CCeeEEEEccCCCc
Q 022184          147 ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG------VAWTFLTRNSD--------EKIELCRFSKDGTK  211 (301)
Q Consensus       147 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~  211 (301)
                      ......+...+.+++|+| +++++++++.|+.|++|+++..      +....+..+..        ..+.+++|+|++++
T Consensus       186 ~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  265 (342)
T 1yfq_A          186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF  265 (342)
T ss_dssp             EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC
T ss_pred             eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCE
Confidence            223345667899999999 9999999999999999999877      67777765532        37999999999997


Q ss_pred             ceEEEEEEeCCcceEEEEEccCceEeeeeecc-CCCcEEEEEcCCCCEEEEeeCCCc-EEEEe
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDGD-ICVVD  272 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~-i~i~~  272 (301)
                           +++++.|+.|++||+++++.+..+..| ...|.+++  |++++|++++.||. .+.+.
T Consensus       266 -----l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          266 -----LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             -----EEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             -----EEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence                 788899999999999999999888888 89999999  99999999999998 55554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.6e-32  Score=228.19  Aligned_cols=254  Identities=12%  Similarity=0.185  Sum_probs=193.5

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|.     ..++++|+      .++.+++|++....        ....+.+|...|.+++|+  +..+++++
T Consensus       172 h~~~v~~l~~~-----~~~l~sg~------~dg~i~vwd~~~~~--------~~~~~~~h~~~v~~l~~~--~~~l~s~s  230 (435)
T 1p22_A          172 HTGSVLCLQYD-----ERVIITGS------SDSTVRVWDVNTGE--------MLNTLIHHCEAVLHLRFN--NGMMVTCS  230 (435)
T ss_dssp             CSSCEEEEECC-----SSEEEEEE------TTSCEEEEESSSCC--------EEEEECCCCSCEEEEECC--TTEEEEEE
T ss_pred             CCCcEEEEEEC-----CCEEEEEc------CCCeEEEEECCCCc--------EEEEEcCCCCcEEEEEEc--CCEEEEee
Confidence            45789999993     35788766      67788999886443        134567899999999997  45999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.|++||+.+.......    .....|...|.+++|  +++++++|+.||.|++||+++++.+..+..|...|.+++|
T Consensus       231 ~dg~i~vwd~~~~~~~~~~----~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  304 (435)
T 1p22_A          231 KDRSIAVWDMASPTDITLR----RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY  304 (435)
T ss_dssp             TTSCEEEEECSSSSCCEEE----EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CCCcEEEEeCCCCCCceee----eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe
Confidence            9999999999876542110    112246788999998  7889999999999999999999998888888899999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-------
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-------  235 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-------  235 (301)
                      +  ++++++++.|+.|++||+++++.+..+..+. ..+.+++|  ++..     +++++.|+.|++||+++++       
T Consensus       305 ~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~--~~~~-----l~sg~~dg~i~vwd~~~~~~~~~~~~  374 (435)
T 1p22_A          305 R--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRCIRF--DNKR-----IVSGAYDGKIKVWDLVAALDPRAPAG  374 (435)
T ss_dssp             E--TTEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEC--CSSE-----EEEEETTSCEEEEEHHHHTSTTSCTT
T ss_pred             C--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc-CcEEEEEe--cCCE-----EEEEeCCCcEEEEECCCCCCcccccc
Confidence            5  6799999999999999999999998887654 46999998  6665     7889999999999998766       


Q ss_pred             --EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          236 --KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       236 --~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                        .+..+..|...|.+++|  ++++|++++.||.|++||+.+........  . ..+..++.|.+
T Consensus       375 ~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~-~~~~~~~~~~~  434 (435)
T 1p22_A          375 TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP--P-RSPSRTYTYIS  434 (435)
T ss_dssp             TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--------------------------
T ss_pred             chheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC--C-CCCccceeeec
Confidence              67778889999999999  78899999999999999998876655432  2 45666666654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.1e-31  Score=222.52  Aligned_cols=267  Identities=13%  Similarity=0.111  Sum_probs=209.3

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ..+.+++|+|+   ..+++++.      .++.+.+|+.......  . ......+.+|.+.|.+++|+|+++++++++.|
T Consensus       123 ~~~~~~~~s~~---~~~~~~~~------~~~~i~~~d~~~g~~~--~-~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  190 (433)
T 3bws_A          123 FQPKSVRFIDN---TRLAIPLL------EDEGMDVLDINSGQTV--R-LSPPEKYKKKLGFVETISIPEHNELWVSQMQA  190 (433)
T ss_dssp             SCBCCCEESSS---SEEEEEBT------TSSSEEEEETTTCCEE--E-ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred             CCceEEEEeCC---CeEEEEeC------CCCeEEEEECCCCeEe--e-ecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence            44668899864   56666654      4556788876543321  1 01112456899999999999999999999999


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  163 (301)
                      +.|++||+++++....+.       .+...+.+++|+|+++.++++ +.++.|++||+++++.+..+.. ...+.+++|+
T Consensus       191 ~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~  262 (433)
T 3bws_A          191 NAVHVFDLKTLAYKATVD-------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLS  262 (433)
T ss_dssp             TEEEEEETTTCCEEEEEE-------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEEC
T ss_pred             CEEEEEECCCceEEEEEc-------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEc
Confidence            999999998765432221       355789999999999988554 4799999999998887666544 4569999999


Q ss_pred             CCCcEEEEEe--------CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184          164 LDSEFLATTS--------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       164 ~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  235 (301)
                      |+++++++++        .|+.|++||+++++....+...  ..+..++|+|+++.+    +++++.++.|.+||+.+++
T Consensus       263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l----~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP--GNKRHIVSGNTENKI----YVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE--ECEEEEEECSSTTEE----EEEETTTTEEEEEETTTTE
T ss_pred             CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC--CCcceEEECCCCCEE----EEEecCCCEEEEEECCCCc
Confidence            9999999888        4889999999999877766432  258899999999863    4667889999999999988


Q ss_pred             EeeeeeccCCCcEEEEEcCCCCEEEEeeC---------------CCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          236 KIGHKRLLRKPASVLSISLDGKYLAMGSK---------------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      .+..+. +...+.+++|+|+++++++++.               ||.|++||+.+++.+..+..   ...+.+++|+|||
T Consensus       337 ~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg  412 (433)
T 3bws_A          337 VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQPTGLDVSPDN  412 (433)
T ss_dssp             EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSEEEEEECTTS
T ss_pred             EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCCCceEEEcCCC
Confidence            876665 5677899999999999988876               57999999999998877632   4579999999998


Q ss_pred             C
Q 022184          301 R  301 (301)
Q Consensus       301 ~  301 (301)
                      +
T Consensus       413 ~  413 (433)
T 3bws_A          413 R  413 (433)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-31  Score=223.41  Aligned_cols=247  Identities=12%  Similarity=0.053  Sum_probs=191.2

Q ss_pred             ceeEEEeeeecCCCccEE-EecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            5 GTVTCGSWIKRPENVNLV-VLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..|++++|+|+   +.++ ++|+      .++.+++|++........    .......|...|.+++|+|++++|++++.
T Consensus       103 ~~v~~~~~s~d---~~~l~~~~~------~dg~v~iwd~~~~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  169 (450)
T 2vdu_B          103 SYIRNLRLTSD---ESRLIACAD------SDKSLLVFDVDKTSKNVL----KLRKRFCFSKRPNAISIAEDDTTVIIADK  169 (450)
T ss_dssp             CCEEEEEECTT---SSEEEEEEG------GGTEEEEEEECSSSSSCE----EEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             CceEEEEEcCC---CCEEEEEEC------CCCeEEEEECcCCCCcee----eeeecccCCCCceEEEEcCCCCEEEEEeC
Confidence            36999999987   5564 6655      577889999974222111    11112357789999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC---CCEEEEeecCCeEEEEeCCCcceecc-cccCCccEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLD  159 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~i~~  159 (301)
                      ++.+++|++.+.......   ......|...|.+++|+|+   +++|++++.|+.|++||+++++.+.. ..+|...|.+
T Consensus       170 ~g~v~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~  246 (450)
T 2vdu_B          170 FGDVYSIDINSIPEEKFT---QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSS  246 (450)
T ss_dssp             TSEEEEEETTSCCCSSCC---CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEE
T ss_pred             CCcEEEEecCCccccccc---ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEE
Confidence            999999999876542100   0122347789999999999   99999999999999999998887766 4578889999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec------------------------CCCCeeEEEEccCCCcceEE
Q 022184          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------------------------SDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~~~~  215 (301)
                      ++|+ ++++|++++.|+.|++||+++++.+..+..+                        ....+..++|+|++++    
T Consensus       247 ~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~----  321 (450)
T 2vdu_B          247 ICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF----  321 (450)
T ss_dssp             EEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE----
T ss_pred             EEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE----
Confidence            9999 9999999999999999999999988887632                        1345889999999997    


Q ss_pred             EEEEeC-CcceEEEEEc--cCc---eEeeeeeccCCCcEEEEEcCCCCEEEEeeC------CCcEEEEeCC
Q 022184          216 CTVQRG-DKALLAVYDI--STW---NKIGHKRLLRKPASVLSISLDGKYLAMGSK------DGDICVVDVK  274 (301)
Q Consensus       216 ~~~~~~-~~~~i~~~d~--~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~i~~~~  274 (301)
                       +++++ .++.|++||+  .++   +.+..+..+ ..+.+++|+|++.++++++.      ++.|.+|.+.
T Consensus       322 -l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          322 -VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             -EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             -EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence             45554 8999999999  555   566666666 78999999996544444443      4557888764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4e-32  Score=220.98  Aligned_cols=232  Identities=13%  Similarity=0.110  Sum_probs=177.6

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEE-EE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~   81 (301)
                      ...+|+|++|+|+   +.++|+|..       +.+++|+.++.....          ..+...+..+++.++++.++ ++
T Consensus        18 h~~~V~~v~fs~d---g~~la~g~~-------~~~~iw~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~   77 (355)
T 3vu4_A           18 VSNPVTDYEFNQD---QSCLILSTL-------KSFEIYNVHPVAHIM----------SQEMRHLSKVRMLHRTNYVAFVT   77 (355)
T ss_dssp             -CCCCCEEEECTT---SSEEEEECS-------SEEEEEEETTEEEEE----------EEECSCCCEEEECTTSSEEEEEC
T ss_pred             CCCceEEEEECCC---CCEEEEEcC-------CEEEEEecCCcceee----------eeecCCeEEEEEcCCCCEEEEEE
Confidence            3578999999988   678887653       335899876533211          11223588899999888774 56


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc-ceecccccCCccEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDM  160 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~  160 (301)
                      +.|++|++||..+++....        +.+...|.+++|+++.  ++++. ++.|++||+.++ +.+..+..   +...+
T Consensus        78 ~~d~~v~iWd~~~~~~~~~--------~~~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~  143 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSR--------IKVDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDIR---FGGVC  143 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEE--------EECSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEE
T ss_pred             CCccEEEEEECCCCcEEEE--------EECCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEecc---CCceE
Confidence            7789999999988765322        2355689999998763  44443 789999999987 65555543   44455


Q ss_pred             EecCCCcEEEE--EeCCCcEEEEeCCCCc----------------eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCC
Q 022184          161 DFSLDSEFLAT--TSTDGSARIWKTEDGV----------------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (301)
Q Consensus       161 ~~~~~~~~l~~--~~~d~~i~i~d~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (301)
                      ++++  .++++  ++.||.|++||+++++                .+..+..| ...|.+++|+|++++     +++++.
T Consensus       144 ~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-~~~v~~~~~s~~g~~-----l~s~s~  215 (355)
T 3vu4_A          144 EFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-TNPIKMVRLNRKSDM-----VATCSQ  215 (355)
T ss_dssp             EEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC-SSCEEEEEECTTSSE-----EEEEET
T ss_pred             EEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc-CCceEEEEECCCCCE-----EEEEeC
Confidence            6676  56665  5789999999999765                14555554 557999999999997     799999


Q ss_pred             cce-EEEEEccCceEeeeee-c-cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          223 KAL-LAVYDISTWNKIGHKR-L-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       223 ~~~-i~~~d~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      |++ |++||+++++.+..+. + |...|.+++|+|++++|++++.|+.|++||++..
T Consensus       216 d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          216 DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            998 9999999999988887 4 8899999999999999999999999999999765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.5e-31  Score=212.09  Aligned_cols=224  Identities=10%  Similarity=0.100  Sum_probs=179.8

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc
Q 022184           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (301)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  145 (301)
                      .+.|+||+++ .||+| .|++|+|||+++++....+.     ...|...|.+++|+|++++|++|+.||.|++||+++++
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~-----~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQ-----MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  100 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEE-----CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEE-----ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence            5789999876 66655 69999999999887533221     22467789999999999999999999999999998776


Q ss_pred             eeccc-----------------------------------------ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 022184          146 IILDE-----------------------------------------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE  184 (301)
Q Consensus       146 ~~~~~-----------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  184 (301)
                      .+..+                                         ..|...+..+.+.+++++|++++.|+.|++||++
T Consensus       101 ~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  180 (318)
T 4ggc_A          101 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  180 (318)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence            54322                                         2345567888999999999999999999999998


Q ss_pred             CCceEE---EEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEE
Q 022184          185 DGVAWT---FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (301)
Q Consensus       185 ~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  261 (301)
                      +++...   .....+...+..++++|++..++  .+++++.++.|++||.+....... ..+...+..+.|+|+++.+++
T Consensus       181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL--ATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELIS  257 (318)
T ss_dssp             CBTTBSCCSEEECCCCSCEEEEEECTTSTTEE--EEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEE
T ss_pred             CCcccccceeeecccCCceEEEEecCCCCcEE--EEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEE
Confidence            765321   22223445799999999988632  356788999999999998776644 446678999999999988877


Q ss_pred             ee--CCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          262 GS--KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       262 ~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++  .|+.|++||+++++++..+ .+| ...|++++|+|||+
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l-~gH-~~~V~~l~~spdg~  297 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAEL-KGH-TSRVLSLTMSPDGA  297 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEE-CCC-SSCEEEEEECTTSS
T ss_pred             EEEcCCCEEEEEECCCCcEEEEE-cCC-CCCEEEEEEcCCCC
Confidence            64  7899999999999998887 689 99999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-33  Score=223.76  Aligned_cols=213  Identities=10%  Similarity=0.103  Sum_probs=169.7

Q ss_pred             EECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC-------
Q 022184           70 AVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-------  142 (301)
Q Consensus        70 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~-------  142 (301)
                      .+.+++.+|++|+.||.|++||+.+++....+.         ...|.++.|+|+   +++++.|+.|++|+..       
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~  110 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD  110 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEee
Confidence            345678899999999999999999876533332         245667788887   9999999999999765       


Q ss_pred             --Ccceecccc-cCCccEEEEEecC--CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE
Q 022184          143 --SLRIILDEP-KAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       143 --~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (301)
                        +++.+.... .|..+|.+++|+|  ++++|++++.|+.|++||+++++.......++...+.+++|+|++..     +
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~-----l  185 (343)
T 3lrv_A          111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL-----L  185 (343)
T ss_dssp             TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE-----E
T ss_pred             cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE-----E
Confidence              333333333 4557899999999  99999999999999999999999877665666667999999999997     7


Q ss_pred             EEeCCcceEEEEEccCceEe-eeeec-cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccc--cccCccE--
Q 022184          218 VQRGDKALLAVYDISTWNKI-GHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSI--  291 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~~~~~v--  291 (301)
                      ++++.|+.|++||+++++.+ ..+.. |..+|++++|+|++.+|++++ |+.|++||+++++....+..  .| ...+  
T Consensus       186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~  263 (343)
T 3lrv_A          186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP-EFKTGT  263 (343)
T ss_dssp             EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC------CC
T ss_pred             EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccc-cccccc
Confidence            88999999999999998876 66777 899999999999999999999 55999999999876554421  12 2333  


Q ss_pred             EEEEEccCCC
Q 022184          292 ALVEFCPTQR  301 (301)
Q Consensus       292 ~~~~~spdg~  301 (301)
                      .+++|+|+|+
T Consensus       264 ~~~~~~~~g~  273 (343)
T 3lrv_A          264 VTYDIDDSGK  273 (343)
T ss_dssp             EEEEECTTSS
T ss_pred             eEEEECCCCC
Confidence            3699999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.5e-31  Score=208.56  Aligned_cols=244  Identities=11%  Similarity=0.020  Sum_probs=168.1

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe-
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-   82 (301)
                      ..||..+++.||..+.-.+++|.-     ..+.++...+.+++..+..    ...-.+|...|..+   ++++.+.+++ 
T Consensus        86 ~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~v~sla~spd~~~~~~----~l~s~g~~~~v~~l---~~g~lv~ss~~  153 (356)
T 2w18_A           86 EVPVLQIVPVPDVYNLVCVALGNL-----EIREIRALFCSSDDESEKQ----VLLKSGNIKAVLGL---TKRRLVSSSGT  153 (356)
T ss_dssp             SSCEEEECCCTTCCSCEEEEECSS-----SEEEEEEECC------CCE----EEEEEEEEEEEEEE---TTTEEEEEESS
T ss_pred             CceeEEEEEcCcccceeeeeeccc-----cccceEEEEECCCcccccc----EEEeCCCeEEEEec---CCCcEEEeccc
Confidence            458888888877654555566552     2234455556666322211    01113455555554   5665555543 


Q ss_pred             -cCCcEEEEEEcC-CccccccccccCCCCCCCCCeeEEEEee---CCCEEEEeecCCeEEEEeCCCcceecccccCCc--
Q 022184           83 -TNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--  155 (301)
Q Consensus        83 -~d~~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--  155 (301)
                       .|+.|++|++.. ++.....       ..|...++.++|+|   ++.+|++++.|++|+|||+++++.+..+..|+.  
T Consensus       154 g~d~~V~~~~~s~dG~~~~s~-------~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v  226 (356)
T 2w18_A          154 LSDQQVEVMTFAEDGGGKENQ-------FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ  226 (356)
T ss_dssp             STTCEEEEEEECTTSCEEEEE-------EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---
T ss_pred             CCCCcEEEEEECCCCceeeee-------ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce
Confidence             499999999954 4332211       13567788999999   779999999999999999999999888876543  


Q ss_pred             -cEEEEEecCCCcEE------------EEEeCCCcEEEEeCCCCceEEEEe----ecCCCCeeEEEEccCCCcceEEEEE
Q 022184          156 -SVLDMDFSLDSEFL------------ATTSTDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       156 -~i~~~~~~~~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                       .+.+++|+|+|+++            ++|+.|++|++||..+++.+..+.    ..+...+.+..+  ++..     ++
T Consensus       227 ~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~-----lA  299 (356)
T 2w18_A          227 ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHC-----AA  299 (356)
T ss_dssp             CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTE-----EE
T ss_pred             eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCE-----EE
Confidence             57788999999976            567889999999999998876653    122222333333  3554     68


Q ss_pred             EeCCcceEEEEEccCceEeeeeeccCCCcE-EEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          219 QRGDKALLAVYDISTWNKIGHKRLLRKPAS-VLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                      +++.|++|+|||+.+++.+..+.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus       300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            888999999999999999999988876554 6899999999999999999999995

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.9e-30  Score=212.80  Aligned_cols=241  Identities=15%  Similarity=0.185  Sum_probs=191.5

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeE-EEEecCCcEEEEEEcCCccccccccccCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      .++.+++|+.+...  .      ...+..| ..+.+++|+|+++++ ++++.|+.|++||+.+++....+        .+
T Consensus        10 ~d~~v~v~d~~~~~--~------~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~--------~~   72 (391)
T 1l0q_A           10 ESDNISVIDVTSNK--V------TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV--------PA   72 (391)
T ss_dssp             TTTEEEEEETTTTE--E------EEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE--------EC
T ss_pred             CCCEEEEEECCCCe--E------EEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE--------EC
Confidence            56778888775432  2      2234444 458999999999987 56668999999999877653222        23


Q ss_pred             CCCeeEEEEeeCCCEEEEe-ecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEE-EEEeCCCcEEEEeCCCCceE
Q 022184          112 AGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAW  189 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~  189 (301)
                      ...+.+++|+|++++|+++ +.++.|++||+.+++.+..+. ++..+.+++|+|+++++ ++++.|+.|++||+++++.+
T Consensus        73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            3489999999999987655 467999999999988766554 45678999999999977 67888999999999999988


Q ss_pred             EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee---CCC
Q 022184          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS---KDG  266 (301)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~  266 (301)
                      ..+..+  ..+..++|+|+++.+    +++++.++.|++||+++++....+. +...+.+++|+|++++|++++   .++
T Consensus       152 ~~~~~~--~~~~~~~~~~dg~~l----~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~  224 (391)
T 1l0q_A          152 NTVSVG--RSPKGIAVTPDGTKV----YVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFN  224 (391)
T ss_dssp             EEEECC--SSEEEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             EEEecC--CCcceEEECCCCCEE----EEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCC
Confidence            877654  347999999999872    3567889999999999988776554 456789999999999999988   689


Q ss_pred             cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       267 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .|++||+.+++.+..+. .+  ..+.+++|+|||+
T Consensus       225 ~v~~~d~~~~~~~~~~~-~~--~~~~~~~~s~dg~  256 (391)
T 1l0q_A          225 TVSMIDTGTNKITARIP-VG--PDPAGIAVTPDGK  256 (391)
T ss_dssp             EEEEEETTTTEEEEEEE-CC--SSEEEEEECTTSS
T ss_pred             cEEEEECCCCeEEEEEe-cC--CCccEEEEccCCC
Confidence            99999999998877763 33  4588999999985

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=5.2e-30  Score=211.30  Aligned_cols=244  Identities=13%  Similarity=0.119  Sum_probs=188.5

Q ss_pred             CceeEEEeeeecCCCccEE-EecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            4 GGTVTCGSWIKRPENVNLV-VLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+.+++|+|+   +..+ +.+.      .++.+++|+.....  .      ...+..+. .+.+++|+|++++|++++
T Consensus        31 ~~~~~~~~~s~d---g~~l~~~~~------~d~~i~v~d~~~~~--~------~~~~~~~~-~v~~~~~spdg~~l~~~~   92 (391)
T 1l0q_A           31 GSNPMGAVISPD---GTKVYVANA------HSNDVSIIDTATNN--V------IATVPAGS-SPQGVAVSPDGKQVYVTN   92 (391)
T ss_dssp             SSSEEEEEECTT---SSEEEEEEG------GGTEEEEEETTTTE--E------EEEEECSS-SEEEEEECTTSSEEEEEE
T ss_pred             CCCcceEEECCC---CCEEEEECC------CCCeEEEEECCCCe--E------EEEEECCC-CccceEECCCCCEEEEEE
Confidence            456899999977   4444 4433      45677888764322  2      12233333 899999999999886554


Q ss_pred             -cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEE-EEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184           83 -TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (301)
Q Consensus        83 -~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  160 (301)
                       .++.|++||+.+++....        +.+...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+.. +..+.++
T Consensus        93 ~~~~~v~v~d~~~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~  163 (391)
T 1l0q_A           93 MASSTLSVIDTTSNTVAGT--------VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGI  163 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEE--------EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEE
T ss_pred             CCCCEEEEEECCCCeEEEE--------EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-CCCcceE
Confidence             569999999988765222        2234578999999999977 6777899999999999887766654 4567999


Q ss_pred             EecCCCcEE-EEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC---CcceEEEEEccCceE
Q 022184          161 DFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNK  236 (301)
Q Consensus       161 ~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~  236 (301)
                      +|+|+++++ ++++.++.|++||+++++....+..  ...+.+++|+|++++     ++.++   .++.|++||+++++.
T Consensus       164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~-----l~~~~~~~~~~~v~~~d~~~~~~  236 (391)
T 1l0q_A          164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTK-----AYVTNVDKYFNTVSMIDTGTNKI  236 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSE-----EEEEEECSSCCEEEEEETTTTEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CCCccceEECCCCCE-----EEEEecCcCCCcEEEEECCCCeE
Confidence            999999877 5777889999999999988777763  346899999999997     33333   689999999999988


Q ss_pred             eeeeeccCCCcEEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeccc
Q 022184          237 IGHKRLLRKPASVLSISLDGKYL-AMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      +..+..+. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+
T Consensus       237 ~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          237 TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence            87776654 57899999999987 56678999999999999887765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=1.1e-30  Score=212.61  Aligned_cols=220  Identities=12%  Similarity=0.061  Sum_probs=169.9

Q ss_pred             cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEE-EEeecCCeE
Q 022184           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHL  136 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i  136 (301)
                      .+..|.+.|.+++|+|+|++|++++.++ +++|+++..+.....         +...+..+++.++++.+ ++++.|+.|
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~d~~v   83 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---------EMRHLSKVRMLHRTNYVAFVTGVKEVV   83 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---------ECSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---------ecCCeEEEEEcCCCCEEEEEECCccEE
Confidence            3578999999999999999999988776 899998765432111         11247788888888877 567778999


Q ss_pred             EEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       137 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      ++||+.+++.+..+. +...|.+++|+++.  ++++ .|+.|++||+.++ +.+..+..    +...+++++  ..  + 
T Consensus        84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~--l-  150 (355)
T 3vu4_A           84 HIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GL--L-  150 (355)
T ss_dssp             EEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TE--E-
T ss_pred             EEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cE--E-
Confidence            999999998877664 66799999999764  3333 4789999999987 65555543    345566777  32  1 


Q ss_pred             EEEEeCCcceEEEEEccCce---------------E-eeeeeccCCCcEEEEEcCCCCEEEEeeCCCc-EEEEeCCCcee
Q 022184          216 CTVQRGDKALLAVYDISTWN---------------K-IGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKMEI  278 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~---------------~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~i~~~~~~~~  278 (301)
                      ++.+++.+|.|++||+++++               + +..+..|...|++++|+|+|++|++++.|++ |++||+++++.
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            12237899999999999765               1 5678889999999999999999999999998 99999999999


Q ss_pred             ecccccc-ccCccEEEEEEccCCC
Q 022184          279 NHWSKRL-HLGTSIALVEFCPTQR  301 (301)
Q Consensus       279 ~~~~~~~-~~~~~v~~~~~spdg~  301 (301)
                      +..+..+ | ...|.+++|+|||+
T Consensus       231 ~~~~~~g~h-~~~v~~~~~s~~~~  253 (355)
T 3vu4_A          231 VREFRRGLD-RADVVDMKWSTDGS  253 (355)
T ss_dssp             EEEEECTTC-CSCEEEEEECTTSC
T ss_pred             EEEEEcCCC-CCcEEEEEECCCCC
Confidence            8887545 8 89999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.7e-29  Score=210.98  Aligned_cols=251  Identities=9%  Similarity=0.006  Sum_probs=193.4

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  112 (301)
                      .++.+.+|.+++....+..    ...+.. ...+.+++|+|++.++++++.++.|++||+.+++........  ....|.
T Consensus        97 ~~~~~~l~~~d~~~~~~~~----~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~~~~~~  169 (433)
T 3bws_A           97 EELNEKLIALDKEGITHRF----ISRFKT-GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPE--KYKKKL  169 (433)
T ss_dssp             GGGTTCEEECCBTTCSEEE----EEEEEC-SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCH--HHHTTC
T ss_pred             CCCceEEEEECCCCCcceE----EEEEcC-CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcc--cccccC
Confidence            4455688888875432211    122333 345669999997777778788899999999877653211110  112466


Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEE-EeCCCcEEEEeCCCCceEEE
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDGSARIWKTEDGVAWTF  191 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~  191 (301)
                      ..+.+++|+|+++++++++.|+.|++||+++++.+..+..+...+.+++|+|+++.+++ ++.|+.|++||+++++.+..
T Consensus       170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~  249 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK  249 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence            78999999999999999999999999999998888777777789999999999998754 45899999999999988777


Q ss_pred             EeecCCCCeeEEEEccCCCcceEEEEEEeC--------CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEE-EEe
Q 022184          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRG--------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL-AMG  262 (301)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~  262 (301)
                      +..+  ..+.+++|+|+++.     +++++        .|+.|++||+++++.+... .+...+..++|+|+++.+ +++
T Consensus       250 ~~~~--~~~~~~~~~~~g~~-----l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~  321 (433)
T 3bws_A          250 TDKI--GLPRGLLLSKDGKE-----LYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSD  321 (433)
T ss_dssp             CCCC--SEEEEEEECTTSSE-----EEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEE
T ss_pred             ecCC--CCceEEEEcCCCCE-----EEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEe
Confidence            6543  35899999999987     33333        5889999999998876554 344578899999999755 566


Q ss_pred             eCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          263 SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       263 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +.|+.|++||+.+++....+.  + ...+.+++|+|||+
T Consensus       322 ~~~~~v~v~d~~~~~~~~~~~--~-~~~~~~~~~s~dg~  357 (433)
T 3bws_A          322 MCCSKIEVYDLKEKKVQKSIP--V-FDKPNTIALSPDGK  357 (433)
T ss_dssp             TTTTEEEEEETTTTEEEEEEE--C-SSSEEEEEECTTSS
T ss_pred             cCCCEEEEEECCCCcEEEEec--C-CCCCCeEEEcCCCC
Confidence            889999999999998877653  4 67899999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=3e-30  Score=210.61  Aligned_cols=238  Identities=11%  Similarity=0.075  Sum_probs=185.2

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEE--CCCCCeEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV--NPSGDDFVC   80 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~~   80 (301)
                      ...+|++++|+|+   +.++++|+      .++.+++|++.....         ..+.+|...|.+++|  +|++++|++
T Consensus        85 h~~~v~~~~~~~~---~~~l~s~~------~dg~v~iwd~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~l~~  146 (368)
T 3mmy_A           85 HTGPVLDVCWSDD---GSKVFTAS------CDKTAKMWDLSSNQA---------IQIAQHDAPVKTIHWIKAPNYSCVMT  146 (368)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSEEEEEETTTTEE---------EEEEECSSCEEEEEEEECSSCEEEEE
T ss_pred             ccCCEEEEEECcC---CCEEEEEc------CCCcEEEEEcCCCCc---------eeeccccCceEEEEEEeCCCCCEEEE
Confidence            4678999999987   66777765      677889998865431         124579999999999  899999999


Q ss_pred             EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc--cCCccEE
Q 022184           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP--KAHKSVL  158 (301)
Q Consensus        81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~  158 (301)
                      ++.|+.|++||+.+++....+        .....+.++.+.  ...+++++.++.+++|+++.........  .....+.
T Consensus       147 ~~~dg~i~vwd~~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  216 (368)
T 3mmy_A          147 GSWDKTLKFWDTRSSNPMMVL--------QLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR  216 (368)
T ss_dssp             EETTSEEEEECSSCSSCSEEE--------ECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEE
T ss_pred             ccCCCcEEEEECCCCcEEEEE--------ecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCc
Confidence            999999999999877653222        233455555554  5588899999999999998765432221  2223556


Q ss_pred             EEEecCCCcE----EEEEeCCCcEEEEeCCCC---ceEEEEeecCCC-----------CeeEEEEccCCCcceEEEEEEe
Q 022184          159 DMDFSLDSEF----LATTSTDGSARIWKTEDG---VAWTFLTRNSDE-----------KIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       159 ~~~~~~~~~~----l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      ++++.++...    +++++.|+.|++||++..   .....+..+...           .+.+++|+|++++     ++++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-----l~s~  291 (368)
T 3mmy_A          217 CVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-----LATV  291 (368)
T ss_dssp             EEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-----EEEE
T ss_pred             eEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE-----EEEE
Confidence            6666655544    999999999999999887   445566544322           5999999999987     7889


Q ss_pred             CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                      +.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+..+.|++
T Consensus       292 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          292 GSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             ETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             ccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence            99999999999999999999999999999999999999999999876555544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=5e-29  Score=206.72  Aligned_cols=238  Identities=19%  Similarity=0.176  Sum_probs=179.1

Q ss_pred             CceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC---cEEEEEEcCCccccccccccCCCCCC
Q 022184           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG---GCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        35 ~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~---~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      +.+.+|+.+...         ...+.+|...+.+++|+|+|++|++++.++   .|++||+.+++.. .       ...+
T Consensus       159 ~~i~i~d~~g~~---------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~-------l~~~  221 (415)
T 2hqs_A          159 YELRVSDYDGYN---------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q-------VASF  221 (415)
T ss_dssp             EEEEEEETTSCS---------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E-------EECC
T ss_pred             ceEEEEcCCCCC---------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-E-------eecC
Confidence            567777765322         234567899999999999999999998875   9999999877642 1       1124


Q ss_pred             CCCeeEEEEeeCCCEEE-EeecCC--eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCC
Q 022184          112 AGPQKCLSFSVDGSRFA-AGGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTED  185 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~-~~~~dg--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~  185 (301)
                      ...+.+++|+|||+.|+ +++.++  .|++||+.+++. ..+..+...+.+++|+|||++|++++. ++  .|.+||+.+
T Consensus       222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence            56789999999999887 555555  499999988776 456667778999999999999988876 44  677889988


Q ss_pred             CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC
Q 022184          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD  265 (301)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  265 (301)
                      ++.. .+.. +...+..++|+|+|+++++  ......+..|.+||+.+++.. .+..+. .+.+++|+|||++|++++.+
T Consensus       301 ~~~~-~l~~-~~~~~~~~~~spdG~~l~~--~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~  374 (415)
T 2hqs_A          301 GAPQ-RITW-EGSQNQDADVSSDGKFMVM--VSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQ  374 (415)
T ss_dssp             SCCE-ECCC-SSSEEEEEEECTTSSEEEE--EEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEE
T ss_pred             CCEE-EEec-CCCcccCeEECCCCCEEEE--EECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcC
Confidence            7643 3332 3346889999999997321  111112468999999988764 344443 78999999999999999887


Q ss_pred             C---cEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          266 G---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       266 ~---~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      +   .|++||+..+.... + ..| .+.|.+++|+|-
T Consensus       375 ~~~~~l~~~d~~g~~~~~-l-~~~-~~~v~~~~~~~~  408 (415)
T 2hqs_A          375 GMGSVLNLVSTDGRFKAR-L-PAT-DGQVKFPAWSPY  408 (415)
T ss_dssp             TTEEEEEEEETTSCCEEE-C-CCS-SSEEEEEEECCC
T ss_pred             CCccEEEEEECCCCcEEE-e-eCC-CCCCcCCccccc
Confidence            7   79999998655443 3 456 789999999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=8.8e-29  Score=194.15  Aligned_cols=252  Identities=13%  Similarity=0.069  Sum_probs=161.7

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC--cEEEEEEcCCcc----ccccccccC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGAT----DINLLAKKM  106 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~--~i~~w~~~~~~~----~~~~~~~~~  106 (301)
                      .+..+++|..... .++    ...+.+..|+.+|..+.+.||...|++..-.+  .-.++.+.-...    ...+..   
T Consensus        61 ~~~~v~lw~~~~~-~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s---  132 (356)
T 2w18_A           61 CEDVVSLWKALDA-WQW----EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK---  132 (356)
T ss_dssp             ESSEEEEEEESSS-SBE----EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE---
T ss_pred             ccceEEEcccCCC-ccc----eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe---
Confidence            4566788887653 212    23556777888888888888655444332111  001111100000    000000   


Q ss_pred             CCCCCCCCeeEEEEeeCCCEEEEee--cCCeEEEEeC-CCcceecccccCCccEEEEEecC---CCcEEEEEeCCCcEEE
Q 022184          107 PPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHW-PSLRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARI  180 (301)
Q Consensus       107 ~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~v~d~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i  180 (301)
                        -.+...+..+   ++++++.++.  .|+.|++|++ ++++.+.....|...+..++|+|   +++.|++++.|++|+|
T Consensus       133 --~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkI  207 (356)
T 2w18_A          133 --SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVI  207 (356)
T ss_dssp             --EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEE
T ss_pred             --CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEE
Confidence              0011112221   3444444433  4899999999 45777777777888888899998   7789999999999999


Q ss_pred             EeCCCCceEEEEeecCC--CCeeEEEEccCCCcceEE-------EEEEeCCcceEEEEEccCceEeeee-----eccCCC
Q 022184          181 WKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLF-------CTVQRGDKALLAVYDISTWNKIGHK-----RLLRKP  246 (301)
Q Consensus       181 ~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~  246 (301)
                      ||+++++.+..+..++.  ..+.+++|+|+|..+...       .+++++.|++|++||..+++.+..+     .+|...
T Consensus       208 WDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~  287 (356)
T 2w18_A          208 WNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR  287 (356)
T ss_dssp             EETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC
T ss_pred             EECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce
Confidence            99999999999976542  357788999999862111       1367889999999999999876544     234434


Q ss_pred             cEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCcc-EEEEEEccCCC
Q 022184          247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS-IALVEFCPTQR  301 (301)
Q Consensus       247 v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-v~~~~~spdg~  301 (301)
                      +.+.  +.++.++++++.|++|+|||+.+++.+..+ .+| ... +..++|+|||+
T Consensus       288 ~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~tL-~gH-~~~vvs~vafSPDG~  339 (356)
T 2w18_A          288 FLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTALL-PPV-SDQHWSFVKWSGTDS  339 (356)
T ss_dssp             EEEE--EEETTEEEEEETTSCEEEEETTTCSEEEEE-CCC---CCCCEEEECSSSS
T ss_pred             eEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEEEe-cCC-CCCeEEEEEECCCCC
Confidence            3333  334889999999999999999999999887 566 444 55699999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=7e-29  Score=205.81  Aligned_cols=268  Identities=14%  Similarity=0.096  Sum_probs=191.1

Q ss_pred             eeEEEeeeecCCCccEEEecCCccc-c-CCcCceeEeee--CCCcceeeeCCceeccccccCCcceEEEECC--------
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRA-S-SSPSVLEIFSF--DPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--------   73 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~-~-~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------   73 (301)
                      ++...+|.+.  +..+++.|+-... . ..+..+++|+.  .... .+     ....+.+|...+..+++++        
T Consensus        64 ~~~~~~w~~~--g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~  135 (415)
T 2hqs_A           64 EVQPAAWSAL--GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT-VL-----AQNSYKVNKQWLRYAGHTASDEVFEKL  135 (415)
T ss_dssp             GCCHHHHHTT--TCCEEEEEEEEECTTSCEEEEEEEEECSSSTTC-EE-----EEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHhc--CCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCC-EE-----eeeEEEcChhHHHHHHHHHHHHHHHHH
Confidence            5666778744  3567767652210 0 12237888887  4332 11     1234667777777777664        


Q ss_pred             ------CCCeEEEEecC------CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC---eEEE
Q 022184           74 ------SGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRI  138 (301)
Q Consensus        74 ------~~~~l~~~~~d------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~v  138 (301)
                            .+..++.++.+      +.|++||+++... ..       ...|...+.+++|+|||+.|++++.++   .|++
T Consensus       136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~-------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~  207 (415)
T 2hqs_A          136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FV-------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVI  207 (415)
T ss_dssp             HSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-EE-------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-EE-------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence                  26677766654      7999999975432 11       123567899999999999999999875   9999


Q ss_pred             EeCCCcceecccccCCccEEEEEecCCCcEEE-EEeCCCc--EEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      ||+.+++.. .+..+...+.+++|+|||++|+ +++.++.  |++||+++++. ..+..+ ...+..++|+|+|+.+   
T Consensus       208 ~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdg~~l---  281 (415)
T 2hqs_A          208 QTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG-RSNNTEPTWFPDSQNL---  281 (415)
T ss_dssp             EETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC-SSCEEEEEECTTSSEE---
T ss_pred             EECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC-CCcccceEECCCCCEE---
Confidence            999988764 4556677899999999999887 6666654  99999998876 344433 4568999999999972   


Q ss_pred             EEEEeCCcc--eEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeccccccccCcc
Q 022184          216 CTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTS  290 (301)
Q Consensus       216 ~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~  290 (301)
                       ++.+..++  .|.+||+.+++.. .+..+...+..++|+|+|++|++++.+   ..|++||+.+++....  ..+ . .
T Consensus       282 -~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l--~~~-~-~  355 (415)
T 2hqs_A          282 -AFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL--SST-F-L  355 (415)
T ss_dssp             -EEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC--CCS-S-S
T ss_pred             -EEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe--cCC-C-C
Confidence             22333344  7888899887643 344556678899999999999988764   5899999999887543  334 3 7


Q ss_pred             EEEEEEccCCC
Q 022184          291 IALVEFCPTQR  301 (301)
Q Consensus       291 v~~~~~spdg~  301 (301)
                      +.+++|+|||+
T Consensus       356 ~~~~~~spdg~  366 (415)
T 2hqs_A          356 DETPSLAPNGT  366 (415)
T ss_dssp             CEEEEECTTSS
T ss_pred             cCCeEEcCCCC
Confidence            99999999985

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=4.4e-28  Score=191.79  Aligned_cols=245  Identities=14%  Similarity=0.070  Sum_probs=174.6

Q ss_pred             CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcC-CccccccccccCCCCC
Q 022184           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQ  110 (301)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~-~~~~~~~~~~~~~~~~  110 (301)
                      +.++.+.+|+.....  .       ..+..|...|.+++|+|++++|++++ ++.|++||+.+ ++...      .....
T Consensus        19 ~~~~~i~~~d~~~~~--~-------~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~------~~~~~   82 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRK--M-------RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK------VDTGF   82 (297)
T ss_dssp             CCCEEEEEEETTTTE--E-------EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE------CCCTT
T ss_pred             CcceeEEEEeCCCCc--e-------eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE------ecccc
Confidence            356677777664332  2       12456788999999999999999876 78899999987 55421      11111


Q ss_pred             CCCCeeEEEEeeCCCEEEEee--cCCeEEEE--eCCCcceecccccCCccEEEEEecCCCcEEE-EEeCCCcEEEEeCC-
Q 022184          111 DAGPQKCLSFSVDGSRFAAGG--VDGHLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTE-  184 (301)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~--~dg~i~v~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~-  184 (301)
                      +...+.+++|+|++++|++++  .++...+|  ++.+++. ..+. ....+..++|+|++++|+ ++..++.+++|+++ 
T Consensus        83 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~  160 (297)
T 2ojh_A           83 ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI  160 (297)
T ss_dssp             CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEee-cCCCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence            236788999999999999998  33445555  5454443 3332 334588999999999877 77789999999864 


Q ss_pred             -CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc-CceEeeeeeccCCCcEEEEEcCCCCEEEEe
Q 022184          185 -DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (301)
Q Consensus       185 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  262 (301)
                       +++ ...+.. +...+.+++|+|+++.+    ++.+..++.+.+|++. .+.....+..+...+..++|+|++++|+++
T Consensus       161 ~~~~-~~~~~~-~~~~~~~~~~s~dg~~l----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          161 DSGV-ETRLTH-GEGRNDGPDYSPDGRWI----YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             TTCC-EEECCC-SSSCEEEEEECTTSSEE----EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred             CCCc-ceEccc-CCCccccceECCCCCEE----EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence             333 333333 34468999999999962    2344457888899876 444555666666778899999999999988


Q ss_pred             eCC-----------CcEEEEeCCCceeecccc-ccccCccEEEEEEccCCC
Q 022184          263 SKD-----------GDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       263 ~~d-----------~~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~~spdg~  301 (301)
                      +.+           +.|++||+.+++...... ..| ...+..++|+|||+
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~  284 (297)
T 2ojh_A          235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPDGD  284 (297)
T ss_dssp             EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTTSS
T ss_pred             EcCCCCCcccccCceEEEEEecCCCCceeeeccCCC-CcccccceECCCCC
Confidence            765           569999999876543331 256 67899999999985

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=1.9e-27  Score=211.48  Aligned_cols=223  Identities=11%  Similarity=0.018  Sum_probs=165.4

Q ss_pred             cceEEEECCCCCeEEEEecCCcEEEEEEcCC---ccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC
Q 022184           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG---ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~  141 (301)
                      .|.+++|+|||++|++++. +.|++||+.++   ..        .....+...+..++|||||++|++++ ++.|++||+
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--------~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~  179 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV--------RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDL  179 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC--------CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE--------EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEec
Confidence            4889999999999999876 88999999877   32        12223557799999999999999987 568999999


Q ss_pred             CCcceecccccCCcc----------------EEEEEecCCCcEEEEEeCCC-----------------------------
Q 022184          142 PSLRIILDEPKAHKS----------------VLDMDFSLDSEFLATTSTDG-----------------------------  176 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~----------------i~~~~~~~~~~~l~~~~~d~-----------------------------  176 (301)
                      .+++.......+...                +..++|+|||++|++++.|+                             
T Consensus       180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~  259 (741)
T 2ecf_A          180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA  259 (741)
T ss_dssp             TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred             CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence            887765443333222                47899999999999988765                             


Q ss_pred             ----cEEEEeCCC-CceEEEEee-cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCC----C
Q 022184          177 ----SARIWKTED-GVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK----P  246 (301)
Q Consensus       177 ----~i~i~d~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~  246 (301)
                          .|.+||+.+ ++....... .+...+..++| |||+.+++...-....+..|.+||+.+++.......+..    .
T Consensus       260 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  338 (741)
T 2ecf_A          260 NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPL  338 (741)
T ss_dssp             CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred             CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence                789999988 776544322 23446899999 999974322211234578899999999887655554442    4


Q ss_pred             cEEEEEcCCCCEEEEeeCCCcEEEEeCC-CceeeccccccccCccEEEE-EEccCCC
Q 022184          247 ASVLSISLDGKYLAMGSKDGDICVVDVK-KMEINHWSKRLHLGTSIALV-EFCPTQR  301 (301)
Q Consensus       247 v~~~~~s~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~v~~~-~~spdg~  301 (301)
                      +..++|+|||+++++++.|+.++||.++ +++ ...+ ..+ ...|..+ .|+|||+
T Consensus       339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~-~~~v~~~~~~s~dg~  392 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL-THG-NWSVDELLAVDEKAG  392 (741)
T ss_dssp             CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES-CCS-SSCEEEEEEEETTTT
T ss_pred             CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee-eec-ceEEEeEeEEeCCCC
Confidence            5689999999999999999987777765 334 4434 445 6678787 5999985

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=4.5e-26  Score=184.19  Aligned_cols=273  Identities=12%  Similarity=0.138  Sum_probs=181.0

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...+.+++|+|+   ++.++++..     .++.+.+|+++.....+..    ...+..+. .+..++|+|++++|++++.
T Consensus        37 ~~~~~~~~~spd---g~~l~~~~~-----~~~~v~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~s~dg~~l~~~~~  103 (343)
T 1ri6_A           37 PGQVQPMVVSPD---KRYLYVGVR-----PEFRVLAYRIAPDDGALTF----AAESALPG-SLTHISTDHQGQFVFVGSY  103 (343)
T ss_dssp             SSCCCCEEECTT---SSEEEEEET-----TTTEEEEEEECTTTCCEEE----EEEEECSS-CCSEEEECTTSSEEEEEET
T ss_pred             CCCCceEEECCC---CCEEEEeec-----CCCeEEEEEecCCCCceee----ccccccCC-CCcEEEEcCCCCEEEEEec
Confidence            346778899977   555555442     2377899999854433211    11222233 7899999999998877665


Q ss_pred             -CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCC-cceec----cccc-CCc
Q 022184           84 -NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS-LRIIL----DEPK-AHK  155 (301)
Q Consensus        84 -d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~-~~~~~----~~~~-~~~  155 (301)
                       ++.|.+|++..+... ..    .........+.+++|+|+++++++++ .++.|++||+.+ ++...    .... ...
T Consensus       104 ~~~~i~~~d~~~~~~~-~~----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  178 (343)
T 1ri6_A          104 NAGNVSVTRLEDGLPV-GV----VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA  178 (343)
T ss_dssp             TTTEEEEEEEETTEEE-EE----EEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred             CCCeEEEEECCCCccc-cc----cccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence             788999999522211 11    11112334588899999999888877 899999999987 54321    1222 234


Q ss_pred             cEEEEEecCCCcEEEEEe-CCCcEEEEeCCC--Cce--EEEEeecC-----CCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          156 SVLDMDFSLDSEFLATTS-TDGSARIWKTED--GVA--WTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~--~~~--~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      .+..++|+|+++++++++ .++.|.+|+++.  ++.  ........     ...+..++|+|+++++    +++...++.
T Consensus       179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l----~v~~~~~~~  254 (343)
T 1ri6_A          179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL----YACDRTASL  254 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE----EEEETTTTE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE----EEEecCCCE
Confidence            788999999999776554 789999999953  433  22222111     1246689999999863    245667899


Q ss_pred             EEEEEcc----CceEeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEE--eCCCceeeccccccccCccEEEEEEcc
Q 022184          226 LAVYDIS----TWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVV--DVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       226 i~~~d~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~--~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      |.+||+.    +.+.+..+..+.. +..++|+|+|++|++++ .++.|.+|  |..+++..... .........+++|.|
T Consensus       255 i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~-~~~~g~~p~~i~~~~  332 (343)
T 1ri6_A          255 ITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG-RYAVGQGPMWVVVNA  332 (343)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE-EEECSSSCCEEEEEE
T ss_pred             EEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc-ccccCCCCeeEEEEc
Confidence            9999998    2344444444434 88999999999888887 57999999  44466443222 111134567888887


Q ss_pred             CC
Q 022184          299 TQ  300 (301)
Q Consensus       299 dg  300 (301)
                      +-
T Consensus       333 ~~  334 (343)
T 1ri6_A          333 HE  334 (343)
T ss_dssp             EC
T ss_pred             cc
Confidence            63

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=1.7e-25  Score=181.61  Aligned_cols=276  Identities=12%  Similarity=0.100  Sum_probs=195.3

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccc-cCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE-e
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRA-SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-T   82 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~   82 (301)
                      ..+..++|+|+   ++.++++...+. ...++.  ++.++........      .+. ....+..++|+|+|++++++ .
T Consensus        41 ~~~~~~~~s~d---g~~l~~~~~~~~~~~~~~~--v~~~d~~~~~~~~------~~~-~~~~~~~~~~s~dg~~l~v~~~  108 (353)
T 3vgz_A           41 KGAYEMAYSQQ---ENALWLATSQSRKLDKGGV--VYRLDPVTLEVTQ------AIH-NDLKPFGATINNTTQTLWFGNT  108 (353)
T ss_dssp             SSEEEEEEETT---TTEEEEEECCCTTTEESEE--EEEECTTTCCEEE------EEE-ESSCCCSEEEETTTTEEEEEET
T ss_pred             cCccceEECCC---CCEEEEEcCCCcCCCCCcc--EEEEcCCCCeEEE------EEe-cCCCcceEEECCCCCEEEEEec
Confidence            45678899976   444444332110 011344  4445554433321      121 13457889999999966655 4


Q ss_pred             cCCcEEEEEEcCCccccccccccCCC--CCCCCCeeEEEEeeCCCEEEEee--cCCeEEEEeCCCcceecccccCCccEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPP--LQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVL  158 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~i~  158 (301)
                      .++.|.+||..+++....+.......  ......+.+++|+|+++++++++  .++.|.+||+.+++....+..+...+.
T Consensus       109 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  188 (353)
T 3vgz_A          109 VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST  188 (353)
T ss_dssp             TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC
T ss_pred             CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc
Confidence            57899999998876533332211000  00112368899999999887776  478899999999888776654555688


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec---CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  235 (301)
                      .++|+|+++++++++.++.|.+||+.+++....+...   ....+..++|+|+++.+    .++...++.|.+||..+++
T Consensus       189 ~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l----~~~~~~~~~v~~~d~~~~~  264 (353)
T 3vgz_A          189 GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA----FITDSKAAEVLVVDTRNGN  264 (353)
T ss_dssp             CCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE----EEEESSSSEEEEEETTTCC
T ss_pred             eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE----EEEeCCCCEEEEEECCCCc
Confidence            9999999999999999999999999999988777642   23347789999999973    2445567999999999988


Q ss_pred             EeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          236 KIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+..+....  ...++|+|+++++++++ .++.|.+||..+++.+..+..   ...+.+++|+|||+
T Consensus       265 ~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~  326 (353)
T 3vgz_A          265 ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSADGK  326 (353)
T ss_dssp             EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTTSC
T ss_pred             EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCCCC
Confidence            876666433  25699999999776665 689999999999998877632   35789999999985

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=4e-26  Score=201.91  Aligned_cols=267  Identities=13%  Similarity=0.081  Sum_probs=184.9

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      .+|.+++|+|+   ..+++.        .++.+.+|+...  ...       ..+..+...+.+++|+|||++|+++ .+
T Consensus        82 ~~v~~~~~spd---~~~~~~--------~~~~i~~~d~~~--~~~-------~~l~~~~~~~~~~~~SpdG~~la~~-~~  140 (706)
T 2z3z_A           82 FPSFRTLDAGR---GLVVLF--------TQGGLVGFDMLA--RKV-------TYLFDTNEETASLDFSPVGDRVAYV-RN  140 (706)
T ss_dssp             CCCEEEEETTT---TEEEEE--------ETTEEEEEETTT--TEE-------EEEECCTTCCTTCEECTTSSEEEEE-ET
T ss_pred             cCceeEEECCC---CeEEEE--------ECCEEEEEECCC--Cce-------EEccCCcccccCCcCCCCCCEEEEE-EC
Confidence            46999999977   344443        225556666543  222       1233456778999999999999985 78


Q ss_pred             CcEEEEEEcC-----CccccccccccCCC-------CCCCCCeeEEEEeeCCCEEEEee---------------------
Q 022184           85 GGCKLFEVYG-----GATDINLLAKKMPP-------LQDAGPQKCLSFSVDGSRFAAGG---------------------  131 (301)
Q Consensus        85 ~~i~~w~~~~-----~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~---------------------  131 (301)
                      +.|++|++.+     ++............       .++...+.++.|||||++|++++                     
T Consensus       141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~  220 (706)
T 2z3z_A          141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES  220 (706)
T ss_dssp             TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred             CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence            9999999987     54321111000000       00112258899999999999987                     


Q ss_pred             ------------cCCeEEEEeCCCcceecccc--cCCccEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCCceEEEE
Q 022184          132 ------------VDGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTFL  192 (301)
Q Consensus       132 ------------~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~  192 (301)
                                  .+..|++||+.+++......  .+...+.+++|+|||++|++++.++     .|++||+.+++....+
T Consensus       221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~  300 (706)
T 2z3z_A          221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL  300 (706)
T ss_dssp             EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred             EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence                        44789999998887543332  3446799999999999999988775     8999999998444333


Q ss_pred             e-ecCCC---CeeEEEEcc--CCCcceEEEEEEeCCcceEEEEEcc-CceEeeeeeccCCCcEE-EEEcCCCCEEEEeeC
Q 022184          193 T-RNSDE---KIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASV-LSISLDGKYLAMGSK  264 (301)
Q Consensus       193 ~-~~~~~---~v~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~  264 (301)
                      . .....   .+..++|+|  +|+.     ++++..++.+++|++. +++.+..+..+...+.. ++|+|+++.|++++.
T Consensus       301 ~~~~~~~~~~~~~~~~~sp~~dg~~-----l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~  375 (706)
T 2z3z_A          301 FVETDKHYVEPLHPLTFLPGSNNQF-----IWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST  375 (706)
T ss_dssp             EEEECSSCCCCCSCCEECTTCSSEE-----EEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES
T ss_pred             EEccCCCeECccCCceeecCCCCEE-----EEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec
Confidence            2 22221   246789999  9985     5677788888888876 55666666666667776 799999998876655


Q ss_pred             C-C----cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          265 D-G----DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       265 d-~----~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      + +    .|..||+.+++....   .+ ...+.+++|+|||+
T Consensus       376 ~~~~~~~~l~~~d~~~~~~~~l---~~-~~~~~~~~~spdg~  413 (706)
T 2z3z_A          376 EASPLERHFYCIDIKGGKTKDL---TP-ESGMHRTQLSPDGS  413 (706)
T ss_dssp             SSCTTCBEEEEEETTCCCCEES---CC-SSSEEEEEECTTSS
T ss_pred             CCCCceEEEEEEEcCCCCceec---cC-CCceEEEEECCCCC
Confidence            4 3    677778877763332   24 56789999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=7.2e-26  Score=193.35  Aligned_cols=257  Identities=11%  Similarity=0.055  Sum_probs=186.4

Q ss_pred             eeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccc-ccCCcceEEEECCCCCeEEEEecCCcEEE
Q 022184           11 SWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKL   89 (301)
Q Consensus        11 ~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~~   89 (301)
                      +++|+   +.+++++.      .++.+.+|+.+..  .+      ...+. ++.  +..++|+|+|++|++++.|++|.+
T Consensus       144 ~~~p~---~~~~vs~~------~d~~V~v~D~~t~--~~------~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v  204 (543)
T 1nir_A          144 DLDLP---NLFSVTLR------DAGQIALVDGDSK--KI------VKVIDTGYA--VHISRMSASGRYLLVIGRDARIDM  204 (543)
T ss_dssp             CCCGG---GEEEEEEG------GGTEEEEEETTTC--CE------EEEEECSTT--EEEEEECTTSCEEEEEETTSEEEE
T ss_pred             ccCCC---CEEEEEEc------CCCeEEEEECCCc--eE------EEEEecCcc--cceEEECCCCCEEEEECCCCeEEE
Confidence            35554   44555543      5567788765432  22      12233 333  889999999999999999999999


Q ss_pred             EEE--cCCccccccccccCCCCCCCCCeeEEEEee----CCCEEEEeec-CCeEEEEeCCCcceecccccC---------
Q 022184           90 FEV--YGGATDINLLAKKMPPLQDAGPQKCLSFSV----DGSRFAAGGV-DGHLRIMHWPSLRIILDEPKA---------  153 (301)
Q Consensus        90 w~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~---------  153 (301)
                      ||+  .+.+....        +.+...+..++|+|    ||+++++++. +++|.+||..+++.+..+..+         
T Consensus       205 ~D~~~~t~~~~~~--------i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~  276 (543)
T 1nir_A          205 IDLWAKEPTKVAE--------IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY  276 (543)
T ss_dssp             EETTSSSCEEEEE--------EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred             EECcCCCCcEEEE--------EecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc
Confidence            999  55543221        22345679999999    9999999885 899999999998877665432         


Q ss_pred             -C-ccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          154 -H-KSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       154 -~-~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                       . ..+..+.++|++. ++++...++.|.+||+.+.+.+..........+..+.|+|+|+++    ++++..+++|.+||
T Consensus       277 ~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l----~va~~~~~~v~v~D  352 (543)
T 1nir_A          277 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF----MTAANNSNKVAVID  352 (543)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE----EEEEGGGTEEEEEE
T ss_pred             ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE----EEEecCCCeEEEEE
Confidence             2 2688999999766 566677889999999988665442222234458899999999972    35566788999999


Q ss_pred             ccCceEeeeeec----cCCCcEEEEEcCC-CCEEEEee-CCCcEEEEeCCC-------ceeeccccccccCccEEEEEEc
Q 022184          231 ISTWNKIGHKRL----LRKPASVLSISLD-GKYLAMGS-KDGDICVVDVKK-------MEINHWSKRLHLGTSIALVEFC  297 (301)
Q Consensus       231 ~~~~~~~~~~~~----~~~~v~~~~~s~~-~~~l~~~~-~d~~i~i~~~~~-------~~~~~~~~~~~~~~~v~~~~~s  297 (301)
                      ..+++.+..+..    |......+ ++|+ ++.++++. .|++|.+||+.+       ++.++.+ ..| ...+..++|+
T Consensus       353 ~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l-~~~-g~~~~~v~~~  429 (543)
T 1nir_A          353 SKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-QGQ-GGGSLFIKTH  429 (543)
T ss_dssp             TTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-ECS-CSCCCCEECC
T ss_pred             CCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE-EcC-CCCceEEEcC
Confidence            999998877664    33333333 4787 66666665 579999999998       7777777 456 6778889999


Q ss_pred             cCCC
Q 022184          298 PTQR  301 (301)
Q Consensus       298 pdg~  301 (301)
                      |||+
T Consensus       430 pdg~  433 (543)
T 1nir_A          430 PKSS  433 (543)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            9986

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.5e-25  Score=181.09  Aligned_cols=249  Identities=11%  Similarity=0.108  Sum_probs=172.3

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC-CcEEEEEEc--CCccccccccccCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GGCKLFEVY--GGATDINLLAKKMPPL  109 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-~~i~~w~~~--~~~~~~~~~~~~~~~~  109 (301)
                      .++.+.+|+++......      ......|...+.+++|+|++++|++++.+ +.|.+|+++  ++....  .    ..+
T Consensus        13 ~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~--~----~~~   80 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGALT------LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--A----AES   80 (343)
T ss_dssp             GGTEEEEEEECTTSCEE------EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--E----EEE
T ss_pred             CCCeEEEEEECCCCcEE------EeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee--c----ccc
Confidence            56788999987533111      11123467789999999999999988876 899999997  333211  1    011


Q ss_pred             CCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCC---CcceecccccCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCC
Q 022184          110 QDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWP---SLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTE  184 (301)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~  184 (301)
                      .....+..++|+|++++|++++. ++.|.+||+.   ..+....+ .....+.+++|+|+++++++++ .++.|++||+.
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           81 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence            12236789999999998877664 8899999994   33343333 3345688999999999888877 88999999998


Q ss_pred             C-CceEE----EEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC--ceE--eeeeec---c---CCCcEE
Q 022184          185 D-GVAWT----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNK--IGHKRL---L---RKPASV  249 (301)
Q Consensus       185 ~-~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~--~~~~~~---~---~~~v~~  249 (301)
                      + ++...    .+..+....+..++|+|+++++    +++...++.|.+||+..  ++.  ......   .   ...+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l----~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  235 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA----YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  235 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             CCCceeeecccccccCCCCCcceEEECCCCCEE----EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence            7 55432    2333334468899999999963    34556789999999953  322  222221   1   234668


Q ss_pred             EEEcCCCCEEEEee-CCCcEEEEeCC--C--ceeeccccccccCccEEEEEEccCCC
Q 022184          250 LSISLDGKYLAMGS-KDGDICVVDVK--K--MEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       250 ~~~s~~~~~l~~~~-~d~~i~i~~~~--~--~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++|+|++++|+++. .++.|.+|++.  +  .+.+..+ ..+  ..+.+++|+|||+
T Consensus       236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~--~~~~~~~~s~dg~  289 (343)
T 1ri6_A          236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-PTE--TQPRGFNVDHSGK  289 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-ECS--SSCCCEEECTTSS
T ss_pred             eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee-cCC--CccceEEECCCCC
Confidence            99999999887554 78999999998  3  3344333 222  3488999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=2.2e-25  Score=190.40  Aligned_cols=274  Identities=6%  Similarity=0.033  Sum_probs=197.4

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC----CCCeEEE
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP----SGDDFVC   80 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~   80 (301)
                      ..+.+++|+|+   ++++++++      .++.+.+|+.+......      ...+. +...+..++|+|    +|++|++
T Consensus       179 ~~~~~v~~spd---g~~l~v~~------~d~~V~v~D~~~~t~~~------~~~i~-~g~~p~~va~sp~~~~dg~~l~v  242 (543)
T 1nir_A          179 YAVHISRMSAS---GRYLLVIG------RDARIDMIDLWAKEPTK------VAEIK-IGIEARSVESSKFKGYEDRYTIA  242 (543)
T ss_dssp             TTEEEEEECTT---SCEEEEEE------TTSEEEEEETTSSSCEE------EEEEE-CCSEEEEEEECCSTTCTTTEEEE
T ss_pred             cccceEEECCC---CCEEEEEC------CCCeEEEEECcCCCCcE------EEEEe-cCCCcceEEeCCCcCCCCCEEEE
Confidence            34788999988   66777655      34778888884333222      12233 345689999999    9999998


Q ss_pred             Eec-CCcEEEEEEcCCccccccccccC----CCCCCCCCeeEEEEeeCCCE-EEEeecCCeEEEEeCCCcceec--cccc
Q 022184           81 STT-NGGCKLFEVYGGATDINLLAKKM----PPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIIL--DEPK  152 (301)
Q Consensus        81 ~~~-d~~i~~w~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~v~d~~~~~~~~--~~~~  152 (301)
                      ++. +++|.+||..+.+....+.....    ..+.....+..+.++|++.. +++...++.|.+||+.+.+.+.  .+ .
T Consensus       243 ~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~  321 (543)
T 1nir_A          243 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-G  321 (543)
T ss_dssp             EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-E
T ss_pred             EEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-c
Confidence            874 89999999887765433322110    01112347899999997665 5566778999999998765433  22 3


Q ss_pred             CCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCceEEEEeec---CCCCeeEEEEccCCCcceEEEEEEeC-CcceEE
Q 022184          153 AHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRG-DKALLA  227 (301)
Q Consensus       153 ~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~i~  227 (301)
                      +...+.+++|+|++++|++++ .+++|.+||+++++.+..+...   +......+ ++|++..+    .+++. .+++|.
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~----~~s~~~~d~~V~  396 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPV----WSTSHLGDGSIS  396 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEE----EEEEBSSSSEEE
T ss_pred             cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccE----EEeccCCCceEE
Confidence            445678899999999776554 6889999999999988887642   22222222 46775542    34443 689999


Q ss_pred             EEEccC-------ceEeeeeeccCCCcEEEEEcCCCCEEEEee-------CCCcEEEEeCCCceee-cccc-------cc
Q 022184          228 VYDIST-------WNKIGHKRLLRKPASVLSISLDGKYLAMGS-------KDGDICVVDVKKMEIN-HWSK-------RL  285 (301)
Q Consensus       228 ~~d~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~d~~i~i~~~~~~~~~-~~~~-------~~  285 (301)
                      +||+.+       ++.+..+..+...+..++++|++++|++++       .+++|.+||+.+++.. ..+.       ..
T Consensus       397 v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~  476 (543)
T 1nir_A          397 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE  476 (543)
T ss_dssp             EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred             EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCC
Confidence            999998       888899998888889999999999999987       2679999999998766 3321       23


Q ss_pred             ccCccEEEEEEccCCC
Q 022184          286 HLGTSIALVEFCPTQR  301 (301)
Q Consensus       286 ~~~~~v~~~~~spdg~  301 (301)
                      + ...+..++|+|||+
T Consensus       477 ~-~~~~~~~~~~~~g~  491 (543)
T 1nir_A          477 G-AKRVVQPEYNKRGD  491 (543)
T ss_dssp             S-CCEEEEEEECSSSS
T ss_pred             C-CCceEeccCCCCCC
Confidence            4 57899999999996

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=3e-26  Score=203.24  Aligned_cols=270  Identities=11%  Similarity=0.065  Sum_probs=181.3

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCC---cceEEEECCCCCeEEEE
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~   81 (301)
                      ..+.+++|+||   +.+++. +      .++.+.+|+......        ...+.+|..   .|.+++|||||++|+++
T Consensus        17 ~~~~~~~~spd---g~~~~~-~------~dg~i~~~d~~~g~~--------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~   78 (723)
T 1xfd_A           17 IHDPEAKWISD---TEFIYR-E------QKGTVRLWNVETNTS--------TVLIEGKKIESLRAIRYEISPDREYALFS   78 (723)
T ss_dssp             CCCCCCCBSSS---SCBCCC-C------SSSCEEEBCGGGCCC--------EEEECTTTTTTTTCSEEEECTTSSEEEEE
T ss_pred             ccccccEEcCC---CcEEEE-e------CCCCEEEEECCCCcE--------EEEeccccccccccceEEECCCCCEEEEE
Confidence            44678999988   445543 2      456677776654321        122344443   49999999999999998


Q ss_pred             ecC---------CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184           82 TTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (301)
Q Consensus        82 ~~d---------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  152 (301)
                      +.+         +.+++||+++++. ..+.    ....+...+..++|||||+.|++++. +.|++||+.+++.......
T Consensus        79 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~----~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           79 YNVEPIYQHSYTGYYVLSKIPHGDP-QSLD----PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             ESCCCCSSSCCCSEEEEEESSSCCC-EECC----CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             ecCccceeecceeeEEEEECCCCce-Eecc----CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence            764         6788999987764 1111    11123345788999999999999885 7999999988876544433


Q ss_pred             CCcc------------------EEEEEecCCCcEEEEEeCCC----------------------------------cEEE
Q 022184          153 AHKS------------------VLDMDFSLDSEFLATTSTDG----------------------------------SARI  180 (301)
Q Consensus       153 ~~~~------------------i~~~~~~~~~~~l~~~~~d~----------------------------------~i~i  180 (301)
                      +...                  +.+++|+|||++|++++.|+                                  .|++
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~  232 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV  232 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence            3332                  27899999999999987553                                  7999


Q ss_pred             EeCCCCceEEEEeec-----CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc-CCCc----EEE
Q 022184          181 WKTEDGVAWTFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPA----SVL  250 (301)
Q Consensus       181 ~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v----~~~  250 (301)
                      ||+.+++....+..+     +...+..++|+|||+.++ +....+..+..|.+||+.+++.......+ ...+    ..+
T Consensus       233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~-~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  311 (723)
T 1xfd_A          233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV-TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEP  311 (723)
T ss_dssp             EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE-EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCC
T ss_pred             EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE-EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCc
Confidence            999888765555433     134588999999998521 11111235578999999988766544332 2333    378


Q ss_pred             EEcCCCCEEEEe--eCCC------cEEEEe-CCCcee--eccccccccCccEEE-EEEccCCC
Q 022184          251 SISLDGKYLAMG--SKDG------DICVVD-VKKMEI--NHWSKRLHLGTSIAL-VEFCPTQR  301 (301)
Q Consensus       251 ~~s~~~~~l~~~--~~d~------~i~i~~-~~~~~~--~~~~~~~~~~~~v~~-~~~spdg~  301 (301)
                      +|+|||+.|+..  ..++      .|.+|| ..+++.  ...+..+  ...+.. ++|+|||+
T Consensus       312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~  372 (723)
T 1xfd_A          312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGN  372 (723)
T ss_dssp             EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTT
T ss_pred             eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCC
Confidence            999999977754  4566      577788 444441  3333222  234444 79999986

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=1e-25  Score=200.32  Aligned_cols=268  Identities=9%  Similarity=0.066  Sum_probs=186.0

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcc-eeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT-SVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..|.+++|+||   ++.++++..       +.+.+|+.+.... .       ...+..|...+..++|+|||++|++++ 
T Consensus       109 ~~v~~~~~SpD---g~~l~~~~~-------~~i~~~d~~~~~~~~-------~~~l~~~~~~~~~~~~SPDG~~la~~~-  170 (741)
T 2ecf_A          109 TGIVDYQWSPD---AQRLLFPLG-------GELYLYDLKQEGKAA-------VRQLTHGEGFATDAKLSPKGGFVSFIR-  170 (741)
T ss_dssp             EESCCCEECTT---SSEEEEEET-------TEEEEEESSSCSTTS-------CCBCCCSSSCEEEEEECTTSSEEEEEE-
T ss_pred             cCcceeEECCC---CCEEEEEeC-------CcEEEEECCCCCcce-------EEEcccCCcccccccCCCCCCEEEEEe-
Confidence            34789999988   667776542       5556666543310 1       123556778899999999999999886 


Q ss_pred             CCcEEEEEEcCCccccccccccCCCC----------CCCCCeeEEEEeeCCCEEEEeecCC-------------------
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPL----------QDAGPQKCLSFSVDGSRFAAGGVDG-------------------  134 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~dg-------------------  134 (301)
                      ++.|++||+.+++........ ....          .....+..++|||||++|++++.|+                   
T Consensus       171 ~~~i~~~d~~~g~~~~~~~~~-~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~  249 (741)
T 2ecf_A          171 GRNLWVIDLASGRQMQLTADG-STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI  249 (741)
T ss_dssp             TTEEEEEETTTTEEEECCCCC-CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred             CCcEEEEecCCCCEEEeccCC-ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence            458999999876542111100 0000          0001247899999999999987765                   


Q ss_pred             --------------eEEEEeCCC-cceecccc--cCCccEEEEEecCCCcEEEEEeC-----CCcEEEEeCCCCceEEEE
Q 022184          135 --------------HLRIMHWPS-LRIILDEP--KAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTEDGVAWTFL  192 (301)
Q Consensus       135 --------------~i~v~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~  192 (301)
                                    .|++||+.+ ++......  .+...+..++| |||++|++++.     +..|++||+.+++....+
T Consensus       250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~  328 (741)
T 2ecf_A          250 EQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA  328 (741)
T ss_dssp             EEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred             EeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence                          889999988 76543322  35568999999 99999887664     567999999999887776


Q ss_pred             eecCCC---CeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc-CceEeeeeeccCCCcEEE-EEcCCCCEEEEee-CCC
Q 022184          193 TRNSDE---KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVL-SISLDGKYLAMGS-KDG  266 (301)
Q Consensus       193 ~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~-~d~  266 (301)
                      ..+...   .+..++|+|||+.     +++++.++.+.+|.+. .++ ...+..+...+..+ .|+|+++.|++.+ .++
T Consensus       329 ~~~~~~~~~~~~~~~~spdg~~-----~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~  402 (741)
T 2ecf_A          329 HETSPTWVPLHNSLRFLDDGSI-----LWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIES  402 (741)
T ss_dssp             EEECSSCCCCCSCCEECTTSCE-----EEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSC
T ss_pred             EcCCCCcCCcCCceEECCCCeE-----EEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCC
Confidence            655432   3468999999995     5667778877777654 334 55666677778777 5999998776554 444


Q ss_pred             --cEEEEeCCC-ceeeccccccccCccEEEEEEccCCC
Q 022184          267 --DICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       267 --~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                        .++||++.. +.....+.  . ...+..++|+|||+
T Consensus       403 ~~~~~l~~~~~~g~~~~~l~--~-~~~~~~~~~spdg~  437 (741)
T 2ecf_A          403 ARESQIYAVPLQGGQPQRLS--K-APGMHSASFARNAS  437 (741)
T ss_dssp             TTCBEEEEEETTCCCCEECC--C-SCSEEEEEECTTSS
T ss_pred             CceEEEEEEEcCCCCeeecc--c-CCCceEEEECCCCC
Confidence              899999864 44344332  2 45688999999985

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=1.5e-25  Score=198.81  Aligned_cols=282  Identities=11%  Similarity=0.026  Sum_probs=184.6

Q ss_pred             eeEEEeeeecCCCccEEEecCCcccc---CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRAS---SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      .|.+++|+||   ++.++++......   ..++.+.+|+.+.....      ......+|...+..++|||||++|++++
T Consensus        62 ~v~~~~~SpD---g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~~~~SPdG~~la~~~  132 (723)
T 1xfd_A           62 RAIRYEISPD---REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ------SLDPPEVSNAKLQYAGWGPKGQQLIFIF  132 (723)
T ss_dssp             TCSEEEECTT---SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE------ECCCTTCCSCCCSBCCBCSSTTCEEEEE
T ss_pred             ccceEEECCC---CCEEEEEecCccceeecceeeEEEEECCCCceE------eccCCccccccccccEECCCCCEEEEEE
Confidence            4889999988   6677776543221   12356667766543321      1112345666799999999999999987


Q ss_pred             cCCcEEEEEEcCCccccccccccCCC-C----------CCCCCeeEEEEeeCCCEEEEeecCC-----------------
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPP-L----------QDAGPQKCLSFSVDGSRFAAGGVDG-----------------  134 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~-~----------~~~~~v~~~~~s~~~~~l~~~~~dg-----------------  134 (301)
                      . +.|++|++.+++............ .          +....+.+++|||||+.|++++.++                 
T Consensus       133 ~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~  211 (723)
T 1xfd_A          133 E-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYP  211 (723)
T ss_dssp             T-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred             C-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCC
Confidence            6 789999998765422111100000 0          0012347899999999999887553                 


Q ss_pred             -----------------eEEEEeCCCcceecccccC------CccEEEEEecCCCcEEEEEeC----CCcEEEEeCCCCc
Q 022184          135 -----------------HLRIMHWPSLRIILDEPKA------HKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGV  187 (301)
Q Consensus       135 -----------------~i~v~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~  187 (301)
                                       .|++||+.+++....+..+      ...+..++|+|||+++++...    +..|++||+.+++
T Consensus       212 ~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~  291 (723)
T 1xfd_A          212 TVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (723)
T ss_dssp             CCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             cceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence                             7999999888754444433      457899999999998877653    3579999999998


Q ss_pred             eEEEEeecCCCCe----eEEEEccCCCcceEEEEEEeCCcc------eEEEEE-ccCceE--eeeeeccCCCcEE-EEEc
Q 022184          188 AWTFLTRNSDEKI----ELCRFSKDGTKPFLFCTVQRGDKA------LLAVYD-ISTWNK--IGHKRLLRKPASV-LSIS  253 (301)
Q Consensus       188 ~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~d-~~~~~~--~~~~~~~~~~v~~-~~~s  253 (301)
                      ....+..++...+    ..++|+|||+.+++   .+...++      .|.+|| ..+++.  ...+......+.. ++|+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~---~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~s  368 (723)
T 1xfd_A          292 CTKKHEDESEAWLHRQNEEPVFSKDGRKFFF---IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD  368 (723)
T ss_dssp             EEEEEEEECSSCCCCCCCCCEECTTSCSEEE---EEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE
T ss_pred             ceEEEEeccCCEEeccCCCceEcCCCCeEEE---EEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEc
Confidence            7766654443333    37899999997321   2244455      677788 344431  3344433344544 6999


Q ss_pred             CCCCEEEEeeCC---CcEEEEeCCCce--eecccccc--ccCccEEEEEEccCCC
Q 022184          254 LDGKYLAMGSKD---GDICVVDVKKME--INHWSKRL--HLGTSIALVEFCPTQR  301 (301)
Q Consensus       254 ~~~~~l~~~~~d---~~i~i~~~~~~~--~~~~~~~~--~~~~~v~~~~~spdg~  301 (301)
                      |||+.|+..+.+   +.+++|++....  ....+...  | ...+..++|+|||+
T Consensus       369 pdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~spdg~  422 (723)
T 1xfd_A          369 EKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE-NCTYFSASFSHSMD  422 (723)
T ss_dssp             TTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS-SCCCCEEEECTTSS
T ss_pred             CCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccC-CCCeEEEEECCCCC
Confidence            999999876655   789999986432  22222111  4 56688999999985

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=3.7e-25  Score=203.23  Aligned_cols=265  Identities=14%  Similarity=0.122  Sum_probs=198.0

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...+.+++|+++    .+++++.      .++..++|.++..+...       ..+..|. .+...+|+|+|++|+++ .
T Consensus       203 ~~~v~~~~~s~d----~l~~~~~------~dg~~~l~~~~~~g~~~-------~~l~~~~-~~~~~~~SpDG~~la~~-~  263 (1045)
T 1k32_A          203 STHVSSPVIVGH----RIYFITD------IDGFGQIYSTDLDGKDL-------RKHTSFT-DYYPRHLNTDGRRILFS-K  263 (1045)
T ss_dssp             SSCCEEEEEETT----EEEEEEC------TTSSCEEEEEETTSCSC-------EECCCCC-SSCEEEEEESSSCEEEE-E
T ss_pred             CCcccceEEeCC----EEEEEEe------ccCceEEEEEeCCCCcc-------eEecCCC-CcceeeEcCCCCEEEEE-e
Confidence            456788889855    3444433      34667899988655322       1233444 46778999999999987 5


Q ss_pred             CCcEEEEEEcCCcccccccccc----CCCCCCCCCeeEEEEe-eCCCEEEEeecCCeEEEEeCCCcceecccccCCc-cE
Q 022184           84 NGGCKLFEVYGGATDINLLAKK----MPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SV  157 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~i  157 (301)
                      ++.|++|++...... .+....    .....+...+..++|+ |||+.|++++ ++.+++|++..++.. .+..+.. .+
T Consensus       264 ~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~  340 (1045)
T 1k32_A          264 GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRY  340 (1045)
T ss_dssp             TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEE
T ss_pred             CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceE
Confidence            889999998433221 111100    0001133468999999 9999999888 889999999877654 3555666 89


Q ss_pred             EEEEecCCCcEEEEEeCCCcEE-EEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184          158 LDMDFSLDSEFLATTSTDGSAR-IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  236 (301)
                      ..++|+ ||+.|++++.+..+. +||+.+++.. .+. .+...+..++|+|||+.     ++.++.++.|++||+.+++.
T Consensus       341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~-----la~~~~~~~v~~~d~~tg~~  412 (1045)
T 1k32_A          341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKF-----AVVANDRFEIMTVDLETGKP  412 (1045)
T ss_dssp             EEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCE
T ss_pred             EeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCE-----EEEECCCCeEEEEECCCCce
Confidence            999999 999999999888888 9999877654 333 44457999999999998     66777889999999999887


Q ss_pred             eeeeeccCCCcEEEEEcCCCCEEEEeeCCC----------cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDG----------DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----------~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ......+...+..++|||||++|++++.++          .|++||+.+++....  ..| ...+..++|+|||+
T Consensus       413 ~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l--~~~-~~~~~~~~~spdG~  484 (1045)
T 1k32_A          413 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA--TTE-NSHDYAPAFDADSK  484 (1045)
T ss_dssp             EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC--SCS-SSBEEEEEECTTSC
T ss_pred             EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe--eCC-CcccCCceEcCCCC
Confidence            766667888899999999999999887654          899999999884433  445 67789999999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=3.7e-24  Score=173.57  Aligned_cols=252  Identities=12%  Similarity=0.124  Sum_probs=171.2

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec---CCcEEEEEEcCCccccccccccCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPL  109 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~~w~~~~~~~~~~~~~~~~~~~  109 (301)
                      .++.+.+|.++.....+..     .....+...+..++|+|+|+ |++++.   ++.|++|++.++.......     ..
T Consensus        14 ~~~~i~v~~~d~~tg~~~~-----~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~-----~~   82 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTN-----DGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT-----VV   82 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEE-----EEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE-----EE
T ss_pred             CCCCEEEEEEcCCCCeEEE-----eeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee-----ee
Confidence            4567899999987655432     12234557788999999999 665554   5899999997665311110     01


Q ss_pred             CCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCC-cc--eeccccc---------CCccEEEEEecCCCcEEEEEeCCC
Q 022184          110 QDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS-LR--IILDEPK---------AHKSVLDMDFSLDSEFLATTSTDG  176 (301)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~-~~--~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~  176 (301)
                      .+...+..++|+|+|++|++++ .++.+.+|++.. +.  .+..+..         ....+.+++|+|+|+++++...++
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            1345678999999999988887 679999999952 22  2222211         112488999999999666666788


Q ss_pred             cEEEEeCC-CCceEE--EEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC--ceE--eeeeeccC-----
Q 022184          177 SARIWKTE-DGVAWT--FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNK--IGHKRLLR-----  244 (301)
Q Consensus       177 ~i~i~d~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~--~~~~~~~~-----  244 (301)
                      .|.+|++. +++...  .+.......+..++|+|+|+++    +++...++.|.+|++..  ++.  +.......     
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l----~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  238 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA----FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTA  238 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE----EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence            99999998 454332  2233333357889999999963    35567788999999874  443  22222222     


Q ss_pred             -CCcEEEEEcCCCCEEEE-eeCCCcEEEEeCCCc---eeeccccccccCccEEEEEEccCCC
Q 022184          245 -KPASVLSISLDGKYLAM-GSKDGDICVVDVKKM---EINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       245 -~~v~~~~~s~~~~~l~~-~~~d~~i~i~~~~~~---~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                       ..+..++|+|||++|++ ...++.|.+|++...   +.+..+ ..+ ...+..++|+|||+
T Consensus       239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~~-~~~~~~~~~spdg~  298 (347)
T 3hfq_A          239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI-STE-GDFPRDFDLDPTEA  298 (347)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE-ECS-SSCCCEEEECTTSS
T ss_pred             CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE-ecC-CCCcCeEEECCCCC
Confidence             34788999999998855 456899999999732   333333 233 45688999999985

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.94  E-value=7.6e-23  Score=166.73  Aligned_cols=275  Identities=13%  Similarity=0.139  Sum_probs=178.5

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe-cC
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN   84 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d   84 (301)
                      .+..++|+|+   +++++++....  ...+.+.+|.++..+..+..    ......+...+..+++  ++++|++++ .+
T Consensus        51 ~p~~l~~spd---g~~l~~~~~~~--~~~~~v~~~~~~~~~g~~~~----~~~~~~~~~~p~~~~~--dg~~l~~~~~~~  119 (361)
T 3scy_A           51 NPSYLIPSAD---GKFVYSVNEFS--KDQAAVSAFAFDKEKGTLHL----LNTQKTMGADPCYLTT--NGKNIVTANYSG  119 (361)
T ss_dssp             CCCSEEECTT---SSEEEEEECCS--STTCEEEEEEEETTTTEEEE----EEEEECSSSCEEEEEE--CSSEEEEEETTT
T ss_pred             CCceEEECCC---CCEEEEEEccC--CCCCcEEEEEEeCCCCcEEE----eeEeccCCCCcEEEEE--CCCEEEEEECCC
Confidence            3455788876   45555543211  13467899999886443321    1122334556778888  788887776 57


Q ss_pred             CcEEEEEEcCCccccccccc-------cCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCCcce------e---
Q 022184           85 GGCKLFEVYGGATDINLLAK-------KMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI------I---  147 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~------~---  147 (301)
                      +.|.+|++............       ......+...+.+++|+|+|+++++++ .++.|.+|++.....      +   
T Consensus       120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~  199 (361)
T 3scy_A          120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK  199 (361)
T ss_dssp             TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred             CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence            89999999754332111100       000111234568899999999776655 478999998875431      1   


Q ss_pred             ----cccccCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCceE--EEEeec--CCCCeeEEEEccCCCcceEEEEE
Q 022184          148 ----LDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAW--TFLTRN--SDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       148 ----~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                          .........+..++|+|||+++++++ .++.|.+||+.+++..  ..+...  ....+..++|+|+|+++    .+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l----~v  275 (361)
T 3scy_A          200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYL----YA  275 (361)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEE----EE
T ss_pred             ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEE----EE
Confidence                11223345678999999999887777 6899999999877542  222211  12346799999999973    23


Q ss_pred             EeCC-cceEEEEEcc--Cce--EeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEE--eCCCceeeccccccccCcc
Q 022184          219 QRGD-KALLAVYDIS--TWN--KIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVV--DVKKMEINHWSKRLHLGTS  290 (301)
Q Consensus       219 ~~~~-~~~i~~~d~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~--~~~~~~~~~~~~~~~~~~~  290 (301)
                      +... ++.|.+|++.  +++  .+..+.. ...+..++|+|||++|++++ .++.|.+|  |..++++.......+ ...
T Consensus       276 ~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-~~~  353 (361)
T 3scy_A          276 SNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIK-VDK  353 (361)
T ss_dssp             EECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEE-CSS
T ss_pred             ECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeee-CCC
Confidence            4444 6899999985  343  3334443 55788999999999998887 56889995  555777665543334 557


Q ss_pred             EEEEEEc
Q 022184          291 IALVEFC  297 (301)
Q Consensus       291 v~~~~~s  297 (301)
                      +.+++|.
T Consensus       354 p~~v~~~  360 (361)
T 3scy_A          354 PVCLKFV  360 (361)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEc
Confidence            8999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=9.1e-24  Score=170.04  Aligned_cols=248  Identities=9%  Similarity=0.003  Sum_probs=169.7

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-CCcEEEEEEcCCccccccccccCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      .++.+.+|+.+...  +      ...+..+...+ .++|+|+++++++++. ++.|.+||+.+++.......      .+
T Consensus        18 ~~~~v~~~d~~~~~--~------~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------~~   82 (331)
T 3u4y_A           18 HLRRISFFSTDTLE--I------LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ------EG   82 (331)
T ss_dssp             GGTEEEEEETTTCC--E------EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE------EC
T ss_pred             CCCeEEEEeCcccc--e------eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc------cC
Confidence            45666777654332  2      11223345556 9999999997776665 78999999987764111111      12


Q ss_pred             CCCeeEEEEeeCCCEEEEeecCC---eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEE-eCCCc-EEEEeCCCC
Q 022184          112 AGPQKCLSFSVDGSRFAAGGVDG---HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGS-ARIWKTEDG  186 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~-i~i~d~~~~  186 (301)
                      ..+..+++|+|++++++++..++   .|.+||+.+++.+..+.. .....+++|+|+|++++++ ..++. +.+|++...
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            23344499999999999665553   899999998887665543 4457899999999865555 55588 999998764


Q ss_pred             ceEEEE---eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE---eeeeeccCCCcEEEEEcCCCCEEE
Q 022184          187 VAWTFL---TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKPASVLSISLDGKYLA  260 (301)
Q Consensus       187 ~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~  260 (301)
                      ..+...   .......+..++|+|+|+++    +++...++.|.+||+.+++.   +..+.. ...+..++|+|||++++
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l----~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~  236 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFA----FVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVY  236 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEE----EEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEE
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEE----EEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEE
Confidence            433111   11223458999999999963    35566789999999998876   655553 45678899999999777


Q ss_pred             Eee-CCCcEEEEeCCCcee--ecccccc---c--cCccEEEEEEccCCC
Q 022184          261 MGS-KDGDICVVDVKKMEI--NHWSKRL---H--LGTSIALVEFCPTQR  301 (301)
Q Consensus       261 ~~~-~d~~i~i~~~~~~~~--~~~~~~~---~--~~~~v~~~~~spdg~  301 (301)
                      +++ .++.|.+||+.+++.  +..+...   +  .......++|+|||+
T Consensus       237 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  285 (331)
T 3u4y_A          237 VLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET  285 (331)
T ss_dssp             EECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS
T ss_pred             EEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC
Confidence            665 467899999999877  2221110   1  012235689999985

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.94  E-value=1.2e-24  Score=188.36  Aligned_cols=252  Identities=10%  Similarity=0.016  Sum_probs=180.4

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccC-CcceEEEECCCCCeEEEEec
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~   83 (301)
                      .||++++|+||   ++.+|.++.     .++.++||.++..  ..       ..+..|. ..+..++|+|| +.+++++.
T Consensus        22 ~~~~~~~~~~D---G~~la~~s~-----~~g~~~lw~~~~g--~~-------~~lt~~~~~~~~~~~~spd-~~l~~~~~   83 (582)
T 3o4h_A           22 VEKYSLQGVVD---GDKLLVVGF-----SEGSVNAYLYDGG--ET-------VKLNREPINSVLDPHYGVG-RVILVRDV   83 (582)
T ss_dssp             SCEEEEEEEET---TTEEEEEEE-----ETTEEEEEEEETT--EE-------EECCSSCCSEECEECTTCS-EEEEEEEC
T ss_pred             cchheeecCCC---CCeEEEEEc-----cCCceeEEEEcCC--Cc-------EeeecccccccccccCCCC-eEEEEecc
Confidence            57999999999   667777542     3677899997322  21       1233444 68999999999 77777665


Q ss_pred             ---CCcEEEEEEcC--CccccccccccCCCCCCCCCeeEEEEeeCCCE-EEEeecCCeEEEEeCCCcceecccccCCccE
Q 022184           84 ---NGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (301)
Q Consensus        84 ---d~~i~~w~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i  157 (301)
                         +....+|.+..  ......     .   .........+|+|+++. +++...++.+.+||+.+++..... .+..  
T Consensus        84 ~~g~~~~~l~~~~~~~~g~~~~-----l---~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-~~~~--  152 (582)
T 3o4h_A           84 SKGAEQHALFKVNTSRPGEEQR-----L---EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-RLPG--  152 (582)
T ss_dssp             STTSCCEEEEEEETTSTTCCEE-----C---TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-EESS--
T ss_pred             CCCCcceEEEEEeccCCCcccc-----c---cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-cCCC--
Confidence               45677877765  222111     1   11223456799998864 333444555669999888754333 2323  


Q ss_pred             EEEEecCCCcEEEEEeCC----CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc--eEEEEEc
Q 022184          158 LDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDI  231 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~  231 (301)
                      .+++|+|||++|++++.+    +.|++||+.+++.. .+..+ ...+..++|+|||+.     ++++..++  .|++||+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~-~~~~~~~~~SpDG~~-----l~~~~~~~~~~i~~~d~  225 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSG-EGSFSSASISPGMKV-----TAGLETAREARLVTVDP  225 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCS-SCEEEEEEECTTSCE-----EEEEECSSCEEEEEECT
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecC-CCccccceECCCCCE-----EEEccCCCeeEEEEEcC
Confidence            789999999999988877    78999999888765 44433 456899999999997     44566677  8999999


Q ss_pred             cCceEeeeeeccCCCcEEEE--------EcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          232 STWNKIGHKRLLRKPASVLS--------ISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+++.. .+..+...+..++        |+|||.++++++.|+.+++|++  ++....    . ...+.+++|+ ||+
T Consensus       226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~----~-~~~v~~~~~s-dg~  294 (582)
T 3o4h_A          226 RDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA----P-QGNHGRVVLW-RGK  294 (582)
T ss_dssp             TTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC----C-SSEEEEEEEE-TTE
T ss_pred             CCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc----C-CCceEEEEec-CCE
Confidence            988876 6666666666666        9999999999999999999999  665542    2 4678899999 764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=4.1e-23  Score=167.41  Aligned_cols=258  Identities=11%  Similarity=0.076  Sum_probs=168.2

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe-cC
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN   84 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d   84 (301)
                      .+..++|+|+   +++++++..    +.++.+.+|+++......      ...+..+...+..++|+|+|++|++++ .+
T Consensus        41 ~p~~~a~spd---g~l~~~~~~----~~~~~v~~~~~~~g~~~~------~~~~~~~~~~p~~~a~spdg~~l~~~~~~~  107 (347)
T 3hfq_A           41 NPTYLALSAK---DCLYSVDKE----DDEGGIAAWQIDGQTAHK------LNTVVAPGTPPAYVAVDEARQLVYSANYHK  107 (347)
T ss_dssp             CCCCEEECTT---CEEEEEEEE----TTEEEEEEEEEETTEEEE------EEEEEEESCCCSEEEEETTTTEEEEEETTT
T ss_pred             CcceEEEccC---CeEEEEEec----CCCceEEEEEecCCcEEE------eeeeecCCCCCEEEEECCCCCEEEEEeCCC
Confidence            3456778866   344444221    134667777774332111      122345677899999999999998887 67


Q ss_pred             CcEEEEEEcCCccccccccccCC-----CCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC-Ccceec--cccc-CCc
Q 022184           85 GGCKLFEVYGGATDINLLAKKMP-----PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIIL--DEPK-AHK  155 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~-~~~~~~--~~~~-~~~  155 (301)
                      +.+.+|++...............     .......+.+++|+|+|+++++...++.|++|++. +++...  .... ...
T Consensus       108 ~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  187 (347)
T 3hfq_A          108 GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF  187 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred             CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence            89999999642221111110000     00122458899999999966666678899999998 443321  1111 223


Q ss_pred             cEEEEEecCCCcEEEE-EeCCCcEEEEeCCC--CceE--EEEeecCC-----CCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184          156 SVLDMDFSLDSEFLAT-TSTDGSARIWKTED--GVAW--TFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~~--~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      .+..++|+|||+++++ ...++.+.+|++..  ++..  ..+.....     ..+..++|+|+|+++    .++...++.
T Consensus       188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l----~v~~~~~~~  263 (347)
T 3hfq_A          188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL----YVSNRGYNT  263 (347)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE----EEEEETTTE
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEE----EEEeCCCCE
Confidence            6788999999996665 45788999999874  4432  22222111     347889999999973    244556889


Q ss_pred             EEEEEccC---ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC-CcEEEE--eCCCceeec
Q 022184          226 LAVYDIST---WNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-GDICVV--DVKKMEINH  280 (301)
Q Consensus       226 i~~~d~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~i~i~--~~~~~~~~~  280 (301)
                      |.+||+..   .+.+..+..+...+..++|+|||++|++++.+ +.|.+|  |..++++..
T Consensus       264 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          264 LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            99999873   24445555556678999999999999888765 899999  556676554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=6.3e-24  Score=170.97  Aligned_cols=246  Identities=10%  Similarity=0.053  Sum_probs=165.5

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      .++ +++|+|+   ++.++++..     .++.+.+|+.  ....+     ....+..+..+..+++|+|+|++++++..+
T Consensus        41 ~~~-~~~~s~d---g~~l~~~~~-----~~~~i~~~d~--~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  104 (331)
T 3u4y_A           41 DFV-DTAITSD---CSNVVVTSD-----FCQTLVQIET--QLEPP-----KVVAIQEGQSSMADVDITPDDQFAVTVTGL  104 (331)
T ss_dssp             CEE-EEEECSS---SCEEEEEES-----TTCEEEEEEC--SSSSC-----EEEEEEECSSCCCCEEECTTSSEEEECCCS
T ss_pred             Ccc-eEEEcCC---CCEEEEEeC-----CCCeEEEEEC--CCCce-----eEEecccCCCCccceEECCCCCEEEEecCC
Confidence            445 8999977   444444221     2344455544  33322     022344455555559999999999955544


Q ss_pred             C---cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCe-EEEEeCCCccee----cccccCCc
Q 022184           85 G---GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGH-LRIMHWPSLRII----LDEPKAHK  155 (301)
Q Consensus        85 ~---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~-i~v~d~~~~~~~----~~~~~~~~  155 (301)
                      +   .|.+||+.+++....        +.......+++|+|+|++++++ ..++. |.+|++.....+    ........
T Consensus       105 ~~~~~i~v~d~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  176 (331)
T 3u4y_A          105 NHPFNMQSYSFLKNKFIST--------IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGT  176 (331)
T ss_dssp             SSSCEEEEEETTTTEEEEE--------EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSS
T ss_pred             CCcccEEEEECCCCCeEEE--------EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCC
Confidence            2   899999987765222        1233456899999999866555 45578 999998753332    11223345


Q ss_pred             cEEEEEecCCCcEEEEE-eCCCcEEEEeCCCCce---EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184          156 SVLDMDFSLDSEFLATT-STDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  231 (301)
                      .+..++|+|+|++++.+ ..++.|++||+++++.   +..+..+  ..+..++|+|+|+++    .++...++.|.+||+
T Consensus       177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l----~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTV----YVLTESTVDVFNFNQ  250 (331)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEE----EEECSSEEEEEEEET
T ss_pred             CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEE----EEEEcCCCEEEEEEC
Confidence            67899999999965554 4688999999999887   6666643  457899999999963    244556788999999


Q ss_pred             cCceE--eeeeecc----CC---CcEEEEEcCCCCEEEEeeC-CCcEEEEeCCCceeec
Q 022184          232 STWNK--IGHKRLL----RK---PASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINH  280 (301)
Q Consensus       232 ~~~~~--~~~~~~~----~~---~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~  280 (301)
                      .+++.  +..+...    ..   ....++|+||+++|++++. ++.|.+||+.......
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~  309 (331)
T 3u4y_A          251 LSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGY  309 (331)
T ss_dssp             TTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccc
Confidence            98876  3222211    11   2355899999998876655 5699999998766543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=5.7e-25  Score=183.03  Aligned_cols=206  Identities=12%  Similarity=0.069  Sum_probs=154.0

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccc-------ccccc-ccCCCCCCCCCeeEEEEeeCCCEEE----Ee
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD-------INLLA-KKMPPLQDAGPQKCLSFSVDGSRFA----AG  130 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~-------~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~----~~  130 (301)
                      ...+..+++++++.++++++.++ +++|+.......       ..... .....+.+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44688999999999999998888 999886532110       00000 0011123456799999999999999    78


Q ss_pred             ecCCeEEEEeCCCc--------ce---ecccccCCccEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC
Q 022184          131 GVDGHLRIMHWPSL--------RI---ILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE  198 (301)
Q Consensus       131 ~~dg~i~v~d~~~~--------~~---~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  198 (301)
                      +.|+.|++||++++        +.   ...+.+|...|.+++|+|+ +.+|++++.|++|++||++++........+ ..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-~~  193 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS-TV  193 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG-GG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC-CC
Confidence            88999999998765        11   2334457789999999997 789999999999999999998665555443 45


Q ss_pred             CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-------CCcEEEEEcCCCCEEEEe-eCCC----
Q 022184          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------KPASVLSISLDGKYLAMG-SKDG----  266 (301)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~-~~d~----  266 (301)
                      .+.+++|+|+|++     +++++.|+.|++||.+ ++....+..+.       ..+.+++|++++.++++. ..+|    
T Consensus       194 ~v~~v~wspdg~~-----lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~  267 (434)
T 2oit_A          194 AVTSVCWSPKGKQ-----LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLET  267 (434)
T ss_dssp             CEEEEEECTTSSC-----EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSS
T ss_pred             ceeEEEEcCCCCE-----EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCC
Confidence            6999999999998     7889999999999998 44443333322       278999999998877554 3343    


Q ss_pred             --cEEEEeCCCc
Q 022184          267 --DICVVDVKKM  276 (301)
Q Consensus       267 --~i~i~~~~~~  276 (301)
                        .+++|++...
T Consensus       268 ~~~v~i~~l~~~  279 (434)
T 2oit_A          268 SPDVVMALLPKK  279 (434)
T ss_dssp             CCEEEEEECCCT
T ss_pred             CCceEEEEeccC
Confidence              3899999764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=8.6e-24  Score=167.04  Aligned_cols=232  Identities=16%  Similarity=0.105  Sum_probs=164.0

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCC-CcceeeeCCceecccccc-CCcceEEEECCCCCeEEEE
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP-KTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~   81 (301)
                      ...|.+++|+|+   +++++++.       ++.+.+|+.+. ...        ......| ...+.+++|+|++++|+++
T Consensus        41 ~~~v~~~~~spd---g~~l~~~~-------~~~i~~~d~~~~~~~--------~~~~~~~~~~~~~~~~~spdg~~l~~~  102 (297)
T 2ojh_A           41 PELFEAPNWSPD---GKYLLLNS-------EGLLYRLSLAGDPSP--------EKVDTGFATICNNDHGISPDGALYAIS  102 (297)
T ss_dssp             SSCCEEEEECTT---SSEEEEEE-------TTEEEEEESSSCCSC--------EECCCTTCCCBCSCCEECTTSSEEEEE
T ss_pred             CcceEeeEECCC---CCEEEEEc-------CCeEEEEeCCCCCCc--------eEeccccccccccceEECCCCCEEEEE
Confidence            467899999988   56777642       34567776654 221        1123334 4778999999999999999


Q ss_pred             e--cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEE-EeecCCeEEEEeCCC-cceecccccCCccE
Q 022184           82 T--TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPS-LRIILDEPKAHKSV  157 (301)
Q Consensus        82 ~--~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i  157 (301)
                      +  .++...||.++.......       .+.....+..++|+|+++.|+ ++..++.+++|+++. ......+..+...+
T Consensus       103 ~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  175 (297)
T 2ojh_A          103 DKVEFGKSAIYLLPSTGGTPR-------LMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN  175 (297)
T ss_dssp             ECTTTSSCEEEEEETTCCCCE-------ECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred             EeCCCCcceEEEEECCCCceE-------EeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence            8  445677777754322111       112234588999999999887 677899999998632 22334555666789


Q ss_pred             EEEEecCCCcEEEEEe-CCCcEEEEeCC-CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCC-----------cc
Q 022184          158 LDMDFSLDSEFLATTS-TDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----------KA  224 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~  224 (301)
                      .+++|+|++++|+.++ .++.+++|+++ .+.....+..+ ...+..++|+|+++++     +.++.           +.
T Consensus       176 ~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l-----~~~~~~~~~~~~~~~~~~  249 (297)
T 2ojh_A          176 DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS-AYGDWFPHPSPSGDKV-----VFVSYDADVFDHPRDLDV  249 (297)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC-SEEEEEEEECTTSSEE-----EEEEEETTCCSCCSSEEE
T ss_pred             ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC-CcccCCeEECCCCCEE-----EEEEcCCCCCcccccCce
Confidence            9999999999887766 58999999986 45555555443 3468899999999973     22222           36


Q ss_pred             eEEEEEccCceE--eeeeeccCCCcEEEEEcCCCCEEEEeeCCC
Q 022184          225 LLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG  266 (301)
Q Consensus       225 ~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  266 (301)
                      .|.+||+.+++.  +.....+...+..++|+|++++|++++.+.
T Consensus       250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            799999988765  333446778899999999999999887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.5e-23  Score=170.15  Aligned_cols=221  Identities=9%  Similarity=0.016  Sum_probs=170.7

Q ss_pred             CCcceEEEECCCCCeEEEEec-------CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTT-------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDG  134 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~-------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg  134 (301)
                      ...+..++|+|+++++++++.       ++.|.+||..+++......        ....+..++|+|++++++++ ..++
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~v~~~~~~  111 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------NDLKPFGATINNTTQTLWFGNTVNS  111 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------ESSCCCSEEEETTTTEEEEEETTTT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------cCCCcceEEECCCCCEEEEEecCCC
Confidence            456889999999998888774       5689999998776533322        22346789999999966555 5579


Q ss_pred             eEEEEeCCCcceecccccCCc---------cEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceEEEEeecCCCCeeEE
Q 022184          135 HLRIMHWPSLRIILDEPKAHK---------SVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~  203 (301)
                      .|.+||..+++.+..+..+..         .+.+++|+|+++++++++  .++.|.+||+++++....+... ...+..+
T Consensus       112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~  190 (353)
T 3vgz_A          112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT-GKMSTGL  190 (353)
T ss_dssp             EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC-CTTCCCC
T ss_pred             EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC-CCccceE
Confidence            999999999887666554332         278899999999877766  4788999999999988877633 2347889


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec----cCCCcEEEEEcCCCCEEEEeeCC-CcEEEEeCCCcee
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL----LRKPASVLSISLDGKYLAMGSKD-GDICVVDVKKMEI  278 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d-~~i~i~~~~~~~~  278 (301)
                      +|+|+++.     ++.+..++.|.+||..+++....+..    +...+..++|+|+++++++++.+ +.|.+||+.+++.
T Consensus       191 ~~s~dg~~-----l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          191 ALDSEGKR-----LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI  265 (353)
T ss_dssp             EEETTTTE-----EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred             EECCCCCE-----EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            99999997     55667789999999999988766654    34567889999999988777654 8999999999988


Q ss_pred             eccccccccCccEEEEEEccCCC
Q 022184          279 NHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       279 ~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +..+....    ...++|+|||+
T Consensus       266 ~~~~~~~~----~~~~~~s~dg~  284 (353)
T 3vgz_A          266 LAKVAAPE----SLAVLFNPARN  284 (353)
T ss_dssp             EEEEECSS----CCCEEEETTTT
T ss_pred             EEEEEcCC----CceEEECCCCC
Confidence            77664322    25699999985

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=3.1e-22  Score=163.12  Aligned_cols=262  Identities=10%  Similarity=0.126  Sum_probs=172.8

Q ss_pred             cEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC----CcEEEEEEcCC
Q 022184           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN----GGCKLFEVYGG   95 (301)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----~~i~~w~~~~~   95 (301)
                      ..+.+|+-..  +.++.+.+|.++.....+..    ....  +...+..++|+|+|++|++++.+    +.|.+|++...
T Consensus        14 ~~~~vg~y~~--~~~~~i~~~~~d~~~g~~~~----~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~   85 (361)
T 3scy_A           14 LTMLVGTYTS--GNSKGIYTFRFNEETGESLP----LSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE   85 (361)
T ss_dssp             EEEEEEECCS--SSCCEEEEEEEETTTCCEEE----EEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT
T ss_pred             eEEEEEeccC--CCCCCEEEEEEeCCCCCEEE----eecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC
Confidence            3455554322  35678899999887655422    1112  67778899999999999998875    79999999864


Q ss_pred             ccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCCcceecccc--------------cCCccEEEE
Q 022184           96 ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEP--------------KAHKSVLDM  160 (301)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~--------------~~~~~i~~~  160 (301)
                      ..........   ..+......+++  ++++|++++ .++.|.+|++.....+....              .+...+.++
T Consensus        86 ~g~~~~~~~~---~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  160 (361)
T 3scy_A           86 KGTLHLLNTQ---KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCV  160 (361)
T ss_dssp             TTEEEEEEEE---ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEE
T ss_pred             CCcEEEeeEe---ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEE
Confidence            2211111110   012345566777  888877776 57899999997543322211              112245889


Q ss_pred             EecCCCcEEEEEe-CCCcEEEEeCCCCce------E------EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184          161 DFSLDSEFLATTS-TDGSARIWKTEDGVA------W------TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (301)
Q Consensus       161 ~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (301)
                      +|+|+|+++++++ .++.|++|++.....      +      ..........+..++|+|+|+++    .++...++.|.
T Consensus       161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l----~v~~~~~~~v~  236 (361)
T 3scy_A          161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA----YLINEIGGTVI  236 (361)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE----EEEETTTCEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE----EEEcCCCCeEE
Confidence            9999999766655 578999998875431      1      22333334458899999999963    24445688999


Q ss_pred             EEEccCceEe--eeee---ccCCCcEEEEEcCCCCEEEEeeCC--CcEEEEeCC--Ccee--eccccccccCccEEEEEE
Q 022184          228 VYDISTWNKI--GHKR---LLRKPASVLSISLDGKYLAMGSKD--GDICVVDVK--KMEI--NHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       228 ~~d~~~~~~~--~~~~---~~~~~v~~~~~s~~~~~l~~~~~d--~~i~i~~~~--~~~~--~~~~~~~~~~~~v~~~~~  296 (301)
                      +||+.+++..  ..+.   .+......++|+|||++|+++..+  +.|.+|++.  +++.  +..+.  . ...+..++|
T Consensus       237 v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~~~~~~~  313 (361)
T 3scy_A          237 AFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIHPRNFII  313 (361)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSCCCEEEE
T ss_pred             EEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCCCceEEE
Confidence            9999876542  2222   222456799999999999777654  889999996  4442  22221  1 346789999


Q ss_pred             ccCCC
Q 022184          297 CPTQR  301 (301)
Q Consensus       297 spdg~  301 (301)
                      +|||+
T Consensus       314 spdg~  318 (361)
T 3scy_A          314 TPNGK  318 (361)
T ss_dssp             CTTSC
T ss_pred             CCCCC
Confidence            99986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=1.3e-23  Score=193.17  Aligned_cols=222  Identities=14%  Similarity=0.095  Sum_probs=169.4

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEE
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  138 (301)
                      +.+|...+.++.|+++ ..+++++.++.+.+|.+.........       +.+...+...+|+|||+.|+++. ++.|++
T Consensus       199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~-------l~~~~~~~~~~~SpDG~~la~~~-~~~i~~  269 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRK-------HTSFTDYYPRHLNTDGRRILFSK-GGSIYI  269 (1045)
T ss_dssp             EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEE-------CCCCCSSCEEEEEESSSCEEEEE-TTEEEE
T ss_pred             CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceE-------ecCCCCcceeeEcCCCCEEEEEe-CCEEEE
Confidence            4678889999999988 56667778899999998743221111       11223466789999999998885 899999


Q ss_pred             EeCCCcceeccccc-----------CCccEEEEEec-CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEc
Q 022184          139 MHWPSLRIILDEPK-----------AHKSVLDMDFS-LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS  206 (301)
Q Consensus       139 ~d~~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  206 (301)
                      ||+...+. ..+..           +...+.+++|+ |||++|++++ ++.+.+|++..++... +..+....+..++|+
T Consensus       270 ~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s  346 (1045)
T 1k32_A          270 FNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD  346 (1045)
T ss_dssp             ECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS
T ss_pred             ecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc
Confidence            99854333 33333           22368899999 9999999888 7899999998876543 333333268899999


Q ss_pred             cCCCcceEEEEEEeCCcceEE-EEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccc
Q 022184          207 KDGTKPFLFCTVQRGDKALLA-VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (301)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~i~-~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~  285 (301)
                       +|+.     ++..+.+..+. +||+.+++... +..+...+..++|+|||++|++++.++.|++||+.+++..... ..
T Consensus       347 -dg~~-----l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~-~~  418 (1045)
T 1k32_A          347 -TKVA-----FIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-RS  418 (1045)
T ss_dssp             -SEEE-----EEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-EC
T ss_pred             -CCCe-----EEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec-cC
Confidence             9887     34445578888 99998776543 3366778999999999999999999999999999999877665 45


Q ss_pred             ccCccEEEEEEccCCC
Q 022184          286 HLGTSIALVEFCPTQR  301 (301)
Q Consensus       286 ~~~~~v~~~~~spdg~  301 (301)
                      | ...+.+++|||||+
T Consensus       419 ~-~~~v~~~~~SpDG~  433 (1045)
T 1k32_A          419 R-EAMITDFTISDNSR  433 (1045)
T ss_dssp             S-SSCCCCEEECTTSC
T ss_pred             C-CCCccceEECCCCC
Confidence            7 78899999999996

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=3.3e-24  Score=189.67  Aligned_cols=220  Identities=15%  Similarity=0.056  Sum_probs=159.5

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~  143 (301)
                      ..|.+++|+|+ ++++.+ .++.|++||+.+++...        ...+...+..++|||||+.|+++ .++.|++||+.+
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~--------l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~  150 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY--------LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK  150 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE--------EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE--------ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence            56999999999 666665 45999999998765411        11234567789999999999985 589999999988


Q ss_pred             -----cceecccccCCcc--------------EEEEEecCCCcEEEEEe-------------------------------
Q 022184          144 -----LRIILDEPKAHKS--------------VLDMDFSLDSEFLATTS-------------------------------  173 (301)
Q Consensus       144 -----~~~~~~~~~~~~~--------------i~~~~~~~~~~~l~~~~-------------------------------  173 (301)
                           ++.......+...              +.+++|+|||++|++++                               
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence                 7665433333332              47899999999999987                               


Q ss_pred             --CCCcEEEEeCCCCceEEEEee-cCCCCeeEEEEccCCCcceEEEEEEeCCc-----ceEEEEEccCceEeeeee-c-c
Q 022184          174 --TDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTWNKIGHKR-L-L  243 (301)
Q Consensus       174 --~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~-~-~  243 (301)
                        .+..|++||+.+++....... .+...+..++|+|||+.+     +..+.+     ..|.+||+.+++....+. . .
T Consensus       231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l-----~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~  305 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENIL-----YVAEVNRAQNECKVNAYDAETGRFVRTLFVETD  305 (706)
T ss_dssp             CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEE-----EEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC
T ss_pred             CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEE-----EEEEeCCCCCeeEEEEEECCCCceeeEEEEccC
Confidence              346799999998876544322 234468999999999973     332223     489999999883332222 1 2


Q ss_pred             CC---CcEEEEEcC--CCCEEEEeeCCCcEEEEeCC-CceeeccccccccCccEEE-EEEccCCC
Q 022184          244 RK---PASVLSISL--DGKYLAMGSKDGDICVVDVK-KMEINHWSKRLHLGTSIAL-VEFCPTQR  301 (301)
Q Consensus       244 ~~---~v~~~~~s~--~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~v~~-~~~spdg~  301 (301)
                      ..   .+..++|+|  ||+++++++.|+.++||.++ +++.+..+ ..+ ...+.+ ++|+|||+
T Consensus       306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-~~~-~~~v~~~~~~spdg~  368 (706)
T 2z3z_A          306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-TKG-EWEVTNFAGFDPKGT  368 (706)
T ss_dssp             SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-CCS-SSCEEEEEEECTTSS
T ss_pred             CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec-CCC-CeEEEeeeEEcCCCC
Confidence            21   246789999  99999999999999999876 45555544 345 566776 89999985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1.8e-23  Score=168.53  Aligned_cols=221  Identities=13%  Similarity=-0.004  Sum_probs=161.9

Q ss_pred             cceEEEECCCCCeEE-EEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee------------
Q 022184           65 DPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------------  131 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~-~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------  131 (301)
                      .+..++|+|++++++ ++..++.|.+||+.+++....+....  ...+...+..++|+|+|++++++.            
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST--PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB--TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC--cccccccccceEECCCCCEEEEEecccccccccccc
Confidence            488999999998765 44557899999998776533222110  000112567899999999998886            


Q ss_pred             cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       132 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      .++.|.+||+.+++....+.. ...+.+++|+|++++|+++  ++.|.+||+.+++....+..+..  ...+.|+|++..
T Consensus       113 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~  187 (337)
T 1pby_B          113 QPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW--EAETYAQPDVLA  187 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT--TTTTBCCCBCCC
T ss_pred             cCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc--CCCceeCCCccE
Confidence            579999999998877655543 4467889999999988887  68999999999988777764431  123378999987


Q ss_pred             ceEEEEEEeCCcc-----------------------eEEEEEccCceEe-eeeeccCCCcEEEEEcCCCCEEEEeeCCCc
Q 022184          212 PFLFCTVQRGDKA-----------------------LLAVYDISTWNKI-GHKRLLRKPASVLSISLDGKYLAMGSKDGD  267 (301)
Q Consensus       212 ~~~~~~~~~~~~~-----------------------~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  267 (301)
                      ++    +.+..++                       .|.+||+.+++.. ..+..+...+..++|+|++++++++  ++.
T Consensus       188 l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~  261 (337)
T 1pby_B          188 VW----NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV  261 (337)
T ss_dssp             CC----CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE
T ss_pred             Ee----eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe
Confidence            42    2222222                       5789999988764 2233445678889999999999988  689


Q ss_pred             EEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       268 i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |.+||+.+++.+..+..   ...+.+++|+|||+
T Consensus       262 v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~  292 (337)
T 1pby_B          262 LESFDLEKNASIKRVPL---PHSYYSVNVSTDGS  292 (337)
T ss_dssp             EEEEETTTTEEEEEEEC---SSCCCEEEECTTSC
T ss_pred             EEEEECCCCcCcceecC---CCceeeEEECCCCC
Confidence            99999999988776532   34678999999985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=2.1e-23  Score=168.14  Aligned_cols=244  Identities=13%  Similarity=0.083  Sum_probs=170.1

Q ss_pred             eeEEEeeeecCCCccEE-EecCCccccCCcCceeEeeeCCCcceeeeCCceeccccc---cCCcceEEEECCCCCeEEEE
Q 022184            6 TVTCGSWIKRPENVNLV-VLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SEGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~~~   81 (301)
                      .+.+++|+|+   ++.+ +.+.      .++.+.+|+...  .....    ...+..   |...+..++|+|+|++|+++
T Consensus        35 ~~~~~~~s~d---g~~l~v~~~------~~~~v~~~d~~~--~~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~   99 (337)
T 1pby_B           35 TPMVPMVAPG---GRIAYATVN------KSESLVKIDLVT--GETLG----RIDLSTPEERVKSLFGAALSPDGKTLAIY   99 (337)
T ss_dssp             CCCCEEECTT---SSEEEEEET------TTTEEEEEETTT--CCEEE----EEECCBTTEEEECTTCEEECTTSSEEEEE
T ss_pred             CccceEEcCC---CCEEEEEeC------CCCeEEEEECCC--CCeEe----eEEcCCcccccccccceEECCCCCEEEEE
Confidence            4678889977   4333 4332      345566665543  22211    111111   23368899999999999888


Q ss_pred             e------------cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecc
Q 022184           82 T------------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD  149 (301)
Q Consensus        82 ~------------~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~  149 (301)
                      .            .++.|.+||+.+++....+        .....+.+++|+|++++|+++  ++.|++||+.+++....
T Consensus       100 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~  169 (337)
T 1pby_B          100 ESPVRLELTHFEVQPTRVALYDAETLSRRKAF--------EAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED  169 (337)
T ss_dssp             EEEEEECSSCEEECCCEEEEEETTTTEEEEEE--------ECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE
T ss_pred             ecccccccccccccCceEEEEECCCCcEEEEE--------eCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee
Confidence            6            5799999999876542221        122456788999999988887  68899999998887655


Q ss_pred             cccCCccEEEEEecCCCcEEEEEeCCC------------------------cEEEEeCCCCceEEEEeecCCCCeeEEEE
Q 022184          150 EPKAHKSVLDMDFSLDSEFLATTSTDG------------------------SARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (301)
Q Consensus       150 ~~~~~~~i~~~~~~~~~~~l~~~~~d~------------------------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  205 (301)
                      +..+.. ...+.|+|+++.++..+.++                        .|.+||+++++....-.......+..++|
T Consensus       170 ~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  248 (337)
T 1pby_B          170 KPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV  248 (337)
T ss_dssp             ECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred             eecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEE
Confidence            543331 11237899988766554332                        46899999988752222233345789999


Q ss_pred             ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      +|+++++     +.+  ++.|.+||+.+++.+..+.. ...+.+++|+|+|++|++++.++.|.+||+.+++.+..+.
T Consensus       249 s~dg~~l-----~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          249 NPAKTRA-----FGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             CTTSSEE-----EEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             CCCCCEE-----EEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence            9999973     333  68999999999887766654 3567899999999999999999999999999998777654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=6.5e-24  Score=176.69  Aligned_cols=208  Identities=10%  Similarity=-0.012  Sum_probs=143.7

Q ss_pred             ccCCcceEEEECCCCCeEE----EEecCCcEEEEEEcCCcc----ccccccccCCCCCCCCCeeEEEEeeC-CCEEEEee
Q 022184           61 ESEGDPMTIAVNPSGDDFV----CSTTNGGCKLFEVYGGAT----DINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGG  131 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~----~~~~d~~i~~w~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~  131 (301)
                      .|...|.+++|+|++++|+    +++.|+.|++||+.+...    ..+..........|...|.+++|+|+ +++|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            3567899999999999999    778899999999976411    00000001112236789999999997 88999999


Q ss_pred             cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC------CCCeeEEEE
Q 022184          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS------DEKIELCRF  205 (301)
Q Consensus       132 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~  205 (301)
                      .||+|++||++++........|...|.+++|+|+|++|++++.|+.|++||++ ++....+..+.      ...+.++.|
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w  248 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW  248 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred             CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE
Confidence            99999999999887665566677899999999999999999999999999998 55555554332      126889999


Q ss_pred             ccCCCcceEEEEEEeCCc------ceEEEEEccCceE-----eeeee-------ccCCCcEEEEEcCCCCEEEEeeC-CC
Q 022184          206 SKDGTKPFLFCTVQRGDK------ALLAVYDISTWNK-----IGHKR-------LLRKPASVLSISLDGKYLAMGSK-DG  266 (301)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~-----~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~-d~  266 (301)
                      ++++.+  +  +.....+      ..+++||+++.+.     ...+.       ..+.+-..+.+-++.+++++++. .+
T Consensus       249 ~~~~~~--l--~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~  324 (434)
T 2oit_A          249 IGTYVF--A--IVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAST  324 (434)
T ss_dssp             EETTEE--E--EEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCS
T ss_pred             ecCceE--E--EEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCC
Confidence            987654  2  1222223      3489999976421     11111       11223233344467677666654 34


Q ss_pred             cEEEEeC
Q 022184          267 DICVVDV  273 (301)
Q Consensus       267 ~i~i~~~  273 (301)
                      .|.++..
T Consensus       325 dv~vl~~  331 (434)
T 2oit_A          325 EVSILAR  331 (434)
T ss_dssp             BCEEEEE
T ss_pred             ceeEEEe
Confidence            4555554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.91  E-value=3.1e-23  Score=170.62  Aligned_cols=266  Identities=9%  Similarity=0.031  Sum_probs=171.7

Q ss_pred             EeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEE
Q 022184           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKL   89 (301)
Q Consensus        10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~   89 (301)
                      .+|+||   ++.+++...     .++..+||.++..+...      .....++...+..+.|+|+|+.|+.++.++.|++
T Consensus        41 ~~~SpD---g~~l~~~~~-----~~g~~~l~~~d~~~g~~------~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~  106 (388)
T 3pe7_A           41 KCFTRD---GSKLLFGGA-----FDGPWNYYLLDLNTQVA------TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMR  106 (388)
T ss_dssp             CCBCTT---SCEEEEEEC-----TTSSCEEEEEETTTCEE------EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEE
T ss_pred             ccCCCC---CCEEEEEEc-----CCCCceEEEEeCCCCce------EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEE
Confidence            679988   556666442     24455788888766544      2234455556667889999999999999999999


Q ss_pred             EEEcCCccccccccccCCCCCCCCCeeEE--EEeeCCCEEEEe----------------------ecCCeEEEEeCCCcc
Q 022184           90 FEVYGGATDINLLAKKMPPLQDAGPQKCL--SFSVDGSRFAAG----------------------GVDGHLRIMHWPSLR  145 (301)
Q Consensus        90 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~----------------------~~dg~i~v~d~~~~~  145 (301)
                      ||+.+++......       .+...+...  .++|++++++..                      ..+..|++||+.+++
T Consensus       107 ~d~~~g~~~~~~~-------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          107 VDLATLEENVVYQ-------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             EETTTCCEEEEEE-------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             EECCCCcceeeee-------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            9998876422111       112223333  348899888742                      234789999999886


Q ss_pred             eecccccCCccEEEEEecC-CCcEEEEEeCC------CcEEEEeCCCCceEEEEeecCC-CCeeEEEEccCCCcceEEEE
Q 022184          146 IILDEPKAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~  217 (301)
                      .. .+..+...+..++|+| ||+.|+....+      ..|.++|+..++.. .+..+.. ..+..++|+|||+.+++...
T Consensus       180 ~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          180 ST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             eE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEec
Confidence            53 4445556789999999 99998887753      37888887665543 3333322 24778899999997432111


Q ss_pred             EEeCCcceEEEEEccCceEeeeeeccC-----CCcEEEEEcCCCCEEEEe---------eCCCcEEEEeCCCceeecccc
Q 022184          218 VQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMG---------SKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~---------~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      -.+..+..|.+||+.+++.........     .....+.|+|||+.|+..         ..+..|++||+.+++..... 
T Consensus       258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-  336 (388)
T 3pe7_A          258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA-  336 (388)
T ss_dssp             ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE-
T ss_pred             CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec-
Confidence            111122359999999887432211111     011224799999988864         44568999999998765443 


Q ss_pred             ccccCc-----------cEEEEEEccCCC
Q 022184          284 RLHLGT-----------SIALVEFCPTQR  301 (301)
Q Consensus       284 ~~~~~~-----------~v~~~~~spdg~  301 (301)
                       .+ ..           .+..++|+|||+
T Consensus       337 -~~-~~~~~~~~~~~~~~~~~~~~spDg~  363 (388)
T 3pe7_A          337 -RH-DTSWKVFEGDRQVTHPHPSFTPDDK  363 (388)
T ss_dssp             -EC-CCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred             -cc-cCcccccccccccCCCCccCCCCCC
Confidence             23 33           478899999985

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=2e-22  Score=163.22  Aligned_cols=245  Identities=15%  Similarity=0.075  Sum_probs=166.2

Q ss_pred             EeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccccc-CCcceEEEECCCCCeEEE-EecCCcE
Q 022184           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVC-STTNGGC   87 (301)
Q Consensus        10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~-~~~d~~i   87 (301)
                      +++.++   ..+++++.      .++.+.+|+...  ....      ..+..+ ...+..++|+|+++++++ ...++.|
T Consensus         5 ~~~~~~---~~~~v~~~------~~~~v~~~d~~~--~~~~------~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i   67 (349)
T 1jmx_B            5 PALKAG---HEYMIVTN------YPNNLHVVDVAS--DTVY------KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI   67 (349)
T ss_dssp             CCCCTT---CEEEEEEE------TTTEEEEEETTT--TEEE------EEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred             ccccCC---CEEEEEeC------CCCeEEEEECCC--CcEE------EEEecCCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence            455544   45555544      455566666543  2221      112222 225789999999987654 4567899


Q ss_pred             EEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC------------CeEEEEeCCCcceecc--cccC
Q 022184           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------------GHLRIMHWPSLRIILD--EPKA  153 (301)
Q Consensus        88 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------g~i~v~d~~~~~~~~~--~~~~  153 (301)
                      .+||+.+++........... ......+..++|+|+|++|++++.+            +.|.+||+.+++....  ...+
T Consensus        68 ~~~d~~t~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  146 (349)
T 1jmx_B           68 YGIDLDTCKNTFHANLSSVP-GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM  146 (349)
T ss_dssp             EEEETTTTEEEEEEESCCST-TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC
T ss_pred             EEEeCCCCcEEEEEEccccc-ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC
Confidence            99999877653222110000 0001236789999999999998865            8999999988554322  1223


Q ss_pred             CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-------------------------------------
Q 022184          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-------------------------------------  196 (301)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------------------------  196 (301)
                      ...+.+++|+|+++ +++++  +.|.+||+.+++....+..+.                                     
T Consensus       147 ~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  223 (349)
T 1jmx_B          147 PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK  223 (349)
T ss_dssp             CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred             CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence            34688999999999 55554  449999999888776654321                                     


Q ss_pred             ------------------------------CCCeeEEEEcc-CCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCC
Q 022184          197 ------------------------------DEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK  245 (301)
Q Consensus       197 ------------------------------~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  245 (301)
                                                    ...+..++|+| +++.     ++.+  ++.|.+||+.+++.+..+.. ..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~-~~  295 (349)
T 1jmx_B          224 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-----IYGV--LNRLAKYDLKQRKLIKAANL-DH  295 (349)
T ss_dssp             ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE-----EEEE--ESEEEEEETTTTEEEEEEEC-SS
T ss_pred             CCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE-----EEEE--cCeEEEEECccCeEEEEEcC-CC
Confidence                                          01245667789 8886     2333  78999999999887766653 34


Q ss_pred             CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       246 ~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      .+..++|+|++++|++++.++.|.+||+.+++.+..+.
T Consensus       296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            57899999999999988889999999999998877653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=3.2e-24  Score=190.12  Aligned_cols=220  Identities=9%  Similarity=-0.024  Sum_probs=155.9

Q ss_pred             eEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec---------CCeEE
Q 022184           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------DGHLR  137 (301)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~  137 (301)
                      .+++|+|+|++++ .+.|+.|++||+.+++....+.....    ....+.+++|||||++|++++.         ++.|+
T Consensus        19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTM----KSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHH----HTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccc----cccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            3789999996544 45799999999988765222111000    0124789999999999998876         68999


Q ss_pred             EEeCCCccee--cccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCC----------------
Q 022184          138 IMHWPSLRII--LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----------------  199 (301)
Q Consensus       138 v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----------------  199 (301)
                      +||+.+++.+  ..+   ...+..++|+|||+.|+++. ++.|++||+.+++........+...                
T Consensus        94 ~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~  169 (719)
T 1z68_A           94 IYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA  169 (719)
T ss_dssp             EEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred             EEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence            9999988763  222   24688899999999999986 7899999998887654332222111                


Q ss_pred             -eeEEEEccCCCcceEEEEEEeCC----------------------------------cceEEEEEccCceEe-------
Q 022184          200 -IELCRFSKDGTKPFLFCTVQRGD----------------------------------KALLAVYDISTWNKI-------  237 (301)
Q Consensus       200 -v~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~i~~~d~~~~~~~-------  237 (301)
                       ...++|+|||+.+     +.++.                                  ...|.+||+.+++..       
T Consensus       170 ~~~~~~wSPDG~~l-----a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~  244 (719)
T 1z68_A          170 TKYALWWSPNGKFL-----AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPV  244 (719)
T ss_dssp             SSCCEEECTTSSEE-----EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCC
T ss_pred             CcccEEECCCCCEE-----EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccC
Confidence             2489999999973     33222                                  227899999887642       


Q ss_pred             -eeeeccCCCcEEEEEcCCCCEEEEeeCC----CcEEEEe----CCCceeecccc---ccccCccEE-----EEEEccCC
Q 022184          238 -GHKRLLRKPASVLSISLDGKYLAMGSKD----GDICVVD----VKKMEINHWSK---RLHLGTSIA-----LVEFCPTQ  300 (301)
Q Consensus       238 -~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~i~~----~~~~~~~~~~~---~~~~~~~v~-----~~~~spdg  300 (301)
                       ..+..+...+..++||||++++++....    ..|.+||    +.+++....+.   ..| ...+.     .++|+|||
T Consensus       245 ~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          245 PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSCSSSSSCCCCEECTTS
T ss_pred             CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-CceEccccCCccEECCCC
Confidence             1123466678999999998877775432    2488999    88888776653   345 55565     88999998


Q ss_pred             C
Q 022184          301 R  301 (301)
Q Consensus       301 ~  301 (301)
                      +
T Consensus       324 ~  324 (719)
T 1z68_A          324 I  324 (719)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=5.6e-23  Score=177.91  Aligned_cols=215  Identities=13%  Similarity=0.022  Sum_probs=153.5

Q ss_pred             CCcceEEEECCCCCeEEEEec-CCcEEEEEEcCCccccccccccCCCCCCC-CCeeEEEEeeCCCEEEEeec---CCeEE
Q 022184           63 EGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDA-GPQKCLSFSVDGSRFAAGGV---DGHLR  137 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~---dg~i~  137 (301)
                      ..+|.+++|+|||++||+++. ||+++||++++++.        .....+. ..+..++|+|| +++++++.   +....
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~--------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~   91 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET--------VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHA   91 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE--------EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc--------EeeecccccccccccCCCC-eEEEEeccCCCCcceE
Confidence            567999999999999998877 99999999966543        1112233 57899999999 77776664   45556


Q ss_pred             EEeCCC---cceecccccCCccEEEEEecCCCcE-EEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcce
Q 022184          138 IMHWPS---LRIILDEPKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (301)
Q Consensus       138 v~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (301)
                      +|.++.   +... .+... ..+...+|+|+++. +++.+.++.+.+||+.+++.......+ .   .+++|+|||+.  
T Consensus        92 l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~---~~~~~spDG~~--  163 (582)
T 3o4h_A           92 LFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G---FGFVSDIRGDL--  163 (582)
T ss_dssp             EEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S---CEEEEEEETTE--
T ss_pred             EEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C---ceEEECCCCCE--
Confidence            655432   2222 23222 23446688888863 333344455669999988765544432 2   78999999997  


Q ss_pred             EEEEEEeCCc----ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeecccccccc
Q 022184          214 LFCTVQRGDK----ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG--DICVVDVKKMEINHWSKRLHL  287 (301)
Q Consensus       214 ~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~  287 (301)
                         ++.++.+    ..|++||+.+++.. .+..+...+..++|||||++|+++..++  .|++||+.+++.. .+ ..| 
T Consensus       164 ---la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~-~~~-  236 (582)
T 3o4h_A          164 ---IAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL-ELP-  236 (582)
T ss_dssp             ---EEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC-CCS-
T ss_pred             ---EEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec-cCC-
Confidence               3433333    78999999887754 5666777889999999999999888888  8999999998877 43 455 


Q ss_pred             CccEEEEE--------EccCCC
Q 022184          288 GTSIALVE--------FCPTQR  301 (301)
Q Consensus       288 ~~~v~~~~--------~spdg~  301 (301)
                      ...+..++        |+|||+
T Consensus       237 ~~~~~~~~~~~~~~~~~spdg~  258 (582)
T 3o4h_A          237 SKDFSSYRPTAITWLGYLPDGR  258 (582)
T ss_dssp             CSHHHHHCCSEEEEEEECTTSC
T ss_pred             CcChhhhhhccccceeEcCCCc
Confidence            55666666        999983

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=1e-22  Score=180.53  Aligned_cols=259  Identities=13%  Similarity=0.106  Sum_probs=170.5

Q ss_pred             EEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCC---cceEEEECCCCCeEEEEec-
Q 022184            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSGDDFVCSTT-   83 (301)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~~-   83 (301)
                      ..++|+|+   +.+++.+       .++.+.+|+.+....        ...+.+|..   .+.+++|||||++|++++. 
T Consensus        19 ~~~~~s~d---g~~~~~~-------~d~~i~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~   80 (719)
T 1z68_A           19 FFPNWISG---QEYLHQS-------ADNNIVLYNIETGQS--------YTILSNRTMKSVNASNYGLSPDRQFVYLESDY   80 (719)
T ss_dssp             CCCEESSS---SEEEEEC-------TTSCEEEEESSSCCE--------EEEECHHHHHTTTCSEEEECTTSSEEEEEEEE
T ss_pred             CccEECCC---CeEEEEc-------CCCCEEEEEcCCCcE--------EEEEccccccccceeeEEECCCCCeEEEEecC
Confidence            36789987   4555542       355667776654331        112233322   4899999999999998876 


Q ss_pred             --------CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC-C
Q 022184           84 --------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-H  154 (301)
Q Consensus        84 --------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~  154 (301)
                              ++.|++||+++++....      ..  ....+..++|||||+.|+++. ++.|++|++.+++........ .
T Consensus        81 ~~~~~~s~~~~i~~~d~~~g~~~~~------~~--l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~  151 (719)
T 1z68_A           81 SKLWRYSYTATYYIYDLSNGEFVRG------NE--LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE  151 (719)
T ss_dssp             EECSSSCEEEEEEEEETTTTEECCS------SC--CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred             ceeEEeecceEEEEEECCCCccccc------ee--cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence                    68999999987764100      11  124578899999999999986 789999999887764322121 1


Q ss_pred             ccE-----------------EEEEecCCCcEEEEEeCCC----------------------------------cEEEEeC
Q 022184          155 KSV-----------------LDMDFSLDSEFLATTSTDG----------------------------------SARIWKT  183 (301)
Q Consensus       155 ~~i-----------------~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~  183 (301)
                      ..+                 .+++|+|||++|++++.|.                                  .|++||+
T Consensus       152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~  231 (719)
T 1z68_A          152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT  231 (719)
T ss_dssp             TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred             CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence            222                 4899999999999988652                                  7889999


Q ss_pred             CCCceE--EEEe-----ecCCCCeeEEEEccCCCcceEEEEEEeC--CcceEEEEE----ccCceEeeee----eccCCC
Q 022184          184 EDGVAW--TFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYD----ISTWNKIGHK----RLLRKP  246 (301)
Q Consensus       184 ~~~~~~--~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d----~~~~~~~~~~----~~~~~~  246 (301)
                      .+++..  ..+.     ..+...+..++|+||++.  ++ .....  ....|.+||    ..+++.....    ..+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~--~~-~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~  308 (719)
T 1z68_A          232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV--CL-QWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW  308 (719)
T ss_dssp             SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE--EE-EEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC
T ss_pred             CCCCccceeEccCCccCCCCcceEEEeEEeCCCeE--EE-EEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce
Confidence            887642  1221     123446899999999763  11 11222  235688999    8777765544    355555


Q ss_pred             cE-----EEEEcCCCCEEEE--eeCCC--cEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          247 AS-----VLSISLDGKYLAM--GSKDG--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       247 v~-----~~~~s~~~~~l~~--~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      +.     .+.|+|||+.|+.  ...+|  .|.+|++.+++....  ..+ ...+..+.++ ||
T Consensus       309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~l--t~~-~~~v~~~~~~-d~  367 (719)
T 1z68_A          309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQI--TSG-KWEAINIFRV-TQ  367 (719)
T ss_dssp             SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEEC--SCS-SSCEEEEEEE-CS
T ss_pred             EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEec--ccC-ceEEEEEEEE-eC
Confidence            65     7899999996654  33444  577888877664332  223 4456666665 54

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.90  E-value=2.3e-21  Score=172.21  Aligned_cols=249  Identities=11%  Similarity=0.107  Sum_probs=166.7

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCC-----cceEEEECCCCCeEE
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG-----DPMTIAVNPSGDDFV   79 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~   79 (301)
                      ...++++|+|+   +.+++.+        ++.+.+|+.......        ..+.+|..     ....+.|||||++|+
T Consensus        17 ~~~~~~~w~~d---g~~~~~~--------~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Spdg~~l~   77 (740)
T 4a5s_A           17 LKLYSLRWISD---HEYLYKQ--------ENNILVFNAEYGNSS--------VFLENSTFDEFGHSINDYSISPDGQFIL   77 (740)
T ss_dssp             CCCCCEEECSS---SEEEEEE--------TTEEEEEETTTCCEE--------EEECTTTTTTCCSCCCEEEECTTSSEEE
T ss_pred             ccccccEECCC---CcEEEEc--------CCcEEEEECCCCceE--------EEEechhhhhhcccccceEECCCCCEEE
Confidence            34678999988   5677763        456677776544321        12333332     335589999999999


Q ss_pred             EEecC---------CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc
Q 022184           80 CSTTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (301)
Q Consensus        80 ~~~~d---------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  150 (301)
                      .++.+         +.+.+||+.+++.        .....+...+..++|||||+.|+.+. ++.|++|++.+++..+..
T Consensus        78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~--------~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt  148 (740)
T 4a5s_A           78 LEYNYVKQWRHSYTASYDIYDLNKRQL--------ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRIT  148 (740)
T ss_dssp             EEEEEEECSSSCEEEEEEEEETTTTEE--------CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred             EEECCeeeEEEccceEEEEEECCCCcE--------EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEc
Confidence            98875         5667999988764        22223456789999999999999885 789999999887754322


Q ss_pred             c-cCCccE-----------------EEEEecCCCcEEEEEeCCC------------------------------------
Q 022184          151 P-KAHKSV-----------------LDMDFSLDSEFLATTSTDG------------------------------------  176 (301)
Q Consensus       151 ~-~~~~~i-----------------~~~~~~~~~~~l~~~~~d~------------------------------------  176 (301)
                      . ++...+                 ..+.|+|||++|+..+.|.                                    
T Consensus       149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~  228 (740)
T 4a5s_A          149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV  228 (740)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred             CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCee
Confidence            2 221222                 3489999999999875332                                    


Q ss_pred             cEEEEeCCC---Cc--eEEEEee-----cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce----Ee--eee
Q 022184          177 SARIWKTED---GV--AWTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----KI--GHK  240 (301)
Q Consensus       177 ~i~i~d~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~--~~~  240 (301)
                      +|++||+.+   ++  ....+..     .+...+..++|+|||+. +++.+.....+..|.+||+.+++    +.  ..+
T Consensus       229 ~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~-~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l  307 (740)
T 4a5s_A          229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI-SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH  307 (740)
T ss_dssp             EEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE-EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE
T ss_pred             EEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeE-EEEEeCCCCCEEEEEEEECCCCccccceeEEEEe
Confidence            478899888   63  2333332     13446889999999984 22222333456689999999876    22  112


Q ss_pred             --eccCCCcE-----EEEEcCCCCEEE-EeeC-C--CcEEEEeCCCceeeccc
Q 022184          241 --RLLRKPAS-----VLSISLDGKYLA-MGSK-D--GDICVVDVKKMEINHWS  282 (301)
Q Consensus       241 --~~~~~~v~-----~~~~s~~~~~l~-~~~~-d--~~i~i~~~~~~~~~~~~  282 (301)
                        ..+...+.     .+.|+|||+.|+ ..+. +  ..|++|++.+++.....
T Consensus       308 ~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT  360 (740)
T 4a5s_A          308 IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT  360 (740)
T ss_dssp             EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred             eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence              33444443     789999999877 6653 3  46888999877665544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=3e-22  Score=162.16  Aligned_cols=213  Identities=13%  Similarity=0.069  Sum_probs=155.9

Q ss_pred             EEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEE-EeecCCeEEEEeCCCcce
Q 022184           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRI  146 (301)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~v~d~~~~~~  146 (301)
                      .++++++++++++++.++.|++||+.+++....+..      .....+..++|+|+++.++ +...++.|.+||+.+++.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~   77 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   77 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE
Confidence            356788888999999999999999987765322211      1112467899999998665 445689999999998887


Q ss_pred             ecccccCC------ccEEEEEecCCCcEEEEEeCC------------CcEEEEeCCCCce---EEEEeecCCCCeeEEEE
Q 022184          147 ILDEPKAH------KSVLDMDFSLDSEFLATTSTD------------GSARIWKTEDGVA---WTFLTRNSDEKIELCRF  205 (301)
Q Consensus       147 ~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~  205 (301)
                      ...+....      ..+..++|+|+|++|++++.+            +.|.+||+.+++.   +..+..  ...+.+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~  155 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRA  155 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEE
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC--CCcccceeE
Confidence            65554322      237889999999999988865            8999999988543   233332  235889999


Q ss_pred             ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-----------------------------------------
Q 022184          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----------------------------------------  244 (301)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------------------------------------  244 (301)
                      +|+++ ++    + .+.  .|.+||..+++.+..+....                                         
T Consensus       156 s~dg~-l~----~-~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  227 (349)
T 1jmx_B          156 ADDGS-LY----V-AGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA  227 (349)
T ss_dssp             CTTSC-EE----E-ESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C
T ss_pred             CCCCc-EE----E-ccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcc
Confidence            99998 32    2 233  39999998887654443221                                         


Q ss_pred             ---------------------------CCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEE
Q 022184          245 ---------------------------KPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       245 ---------------------------~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~  296 (301)
                                                 ..+..++|+| ++++++++  ++.|.+||+.+++.+..+..   ...+.+++|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~  302 (349)
T 1jmx_B          228 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---DHTYYCVAF  302 (349)
T ss_dssp             CCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEE
T ss_pred             ccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---CCCccceEE
Confidence                                       1345677889 99999988  78999999999988776642   345779999


Q ss_pred             ccCCC
Q 022184          297 CPTQR  301 (301)
Q Consensus       297 spdg~  301 (301)
                      +|||+
T Consensus       303 s~dg~  307 (349)
T 1jmx_B          303 DKKGD  307 (349)
T ss_dssp             CSSSS
T ss_pred             CCCCC
Confidence            99985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=2e-21  Score=158.49  Aligned_cols=252  Identities=9%  Similarity=0.049  Sum_probs=163.8

Q ss_pred             CceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEc-CCccccccccccCCCCCCCC
Q 022184           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY-GGATDINLLAKKMPPLQDAG  113 (301)
Q Consensus        35 ~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~~~~~~~~  113 (301)
                      +.|.+|.++.....+....  . ....+...+..++|+|+|++|++++.+ .|.+|++. +++... .....     ..+
T Consensus        14 ~~i~~~~~d~~~g~l~~~~--~-~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~-----~~g   83 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIK--R-TEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHP-----IGG   83 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEE--E-EECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEE-----CCS
T ss_pred             CcEEEEEEECCCCCEEEee--E-EccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEee-----cCC
Confidence            3577888877665542210  0 001234568899999999999988888 89999997 554311 11100     112


Q ss_pred             CeeEEEEeeCCCE--EEEee-------------cCCeEEEEeCC-Ccceecccc----cCCccEEEEEecCCCcEEEEEe
Q 022184          114 PQKCLSFSVDGSR--FAAGG-------------VDGHLRIMHWP-SLRIILDEP----KAHKSVLDMDFSLDSEFLATTS  173 (301)
Q Consensus       114 ~v~~~~~s~~~~~--l~~~~-------------~dg~i~v~d~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~  173 (301)
                      .+..++|+|+|++  ++++.             .++.+.+|++. .++....+.    .+...+.+++|+|||++|+++.
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            3456899999994  44553             68999999997 455432222    1345789999999999888766


Q ss_pred             C-CCcEEEEeCC-CCceEE--EEeec-CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc--CceEe---eeeecc
Q 022184          174 T-DGSARIWKTE-DGVAWT--FLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNKI---GHKRLL  243 (301)
Q Consensus       174 ~-d~~i~i~d~~-~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~---~~~~~~  243 (301)
                      . ++.|++||+. +++...  .+... +...+..++|+|+|+++    .++...++.|.+|++.  +++..   ..+...
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l----~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~  239 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYL----YALMEAGNRICEYVIDPATHMPVYTHHSFPLI  239 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEE----EEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence            4 6799999998 676532  23322 23458999999999973    2334457899999765  44432   112111


Q ss_pred             -------CC------CcEEEE-EcCCCCEEEEeeCC-C-----cEEEEeCC-Cceeeccc--cccccCccEEEEEEcc--
Q 022184          244 -------RK------PASVLS-ISLDGKYLAMGSKD-G-----DICVVDVK-KMEINHWS--KRLHLGTSIALVEFCP--  298 (301)
Q Consensus       244 -------~~------~v~~~~-~s~~~~~l~~~~~d-~-----~i~i~~~~-~~~~~~~~--~~~~~~~~v~~~~~sp--  298 (301)
                             ..      .+..++ |+|||++|++++.+ +     .|.+|++. +++.....  ...+ ...+..++|+|  
T Consensus       240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~~  318 (365)
T 1jof_A          240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP-TSGGHSNAVSPCP  318 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS-SCCTTCCCEEECT
T ss_pred             CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC-CCCcccceecCCC
Confidence                   11      478899 99999998877643 2     89999996 56544311  1223 34566789999  


Q ss_pred             -CCC
Q 022184          299 -TQR  301 (301)
Q Consensus       299 -dg~  301 (301)
                       ||+
T Consensus       319 ~dg~  322 (365)
T 1jof_A          319 WSDE  322 (365)
T ss_dssp             TCTT
T ss_pred             cCCC
Confidence             774

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.89  E-value=5.7e-22  Score=176.03  Aligned_cols=231  Identities=9%  Similarity=-0.034  Sum_probs=156.5

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---------
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------  133 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------  133 (301)
                      .....++.|+|+|++++++  |+.|++||+.+++....+......  ........++|||||++|++++.+         
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD--EFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT--TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh--hhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            3446689999999888886  899999999888753222211111  111233558999999999998875         


Q ss_pred             CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC---------------
Q 022184          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE---------------  198 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------------  198 (301)
                      +.+.+||+.+++.. .+..+...+..++|+|||+.||.+. |+.|++|++.+++...........               
T Consensus        92 ~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A           92 ASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             EEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             eEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence            56779999998764 4556667899999999999999885 689999999888755432211111               


Q ss_pred             --CeeEEEEccCCCcceEEEEEE-----------e--------------------CCcceEEEEEccC---c---eEeee
Q 022184          199 --KIELCRFSKDGTKPFLFCTVQ-----------R--------------------GDKALLAVYDIST---W---NKIGH  239 (301)
Q Consensus       199 --~v~~~~~~~~~~~~~~~~~~~-----------~--------------------~~~~~i~~~d~~~---~---~~~~~  239 (301)
                        ....+.|||||+.+.+...-.           .                    .....|.+||+.+   +   +.. .
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~  248 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-Q  248 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-E
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-E
Confidence              123589999999743221000           0                    0112688999988   7   332 2


Q ss_pred             ee------ccCCCcEEEEEcCCCCEEEEeeC----CCcEEEEeCCCce----eecc---ccccccCccEE-----EEEEc
Q 022184          240 KR------LLRKPASVLSISLDGKYLAMGSK----DGDICVVDVKKME----INHW---SKRLHLGTSIA-----LVEFC  297 (301)
Q Consensus       240 ~~------~~~~~v~~~~~s~~~~~l~~~~~----d~~i~i~~~~~~~----~~~~---~~~~~~~~~v~-----~~~~s  297 (301)
                      +.      .+...+..++|+|||+.++....    +..|.+||+.+++    +...   +...+ ...|.     .++|+
T Consensus       249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fs  327 (740)
T 4a5s_A          249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFT  327 (740)
T ss_dssp             ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEEC
T ss_pred             ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEc
Confidence            22      25667889999999997666533    3479999999887    2221   11234 44443     78899


Q ss_pred             cCCC
Q 022184          298 PTQR  301 (301)
Q Consensus       298 pdg~  301 (301)
                      |||+
T Consensus       328 pDG~  331 (740)
T 4a5s_A          328 LDGN  331 (740)
T ss_dssp             TTSS
T ss_pred             CCCC
Confidence            9985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.88  E-value=1e-20  Score=154.31  Aligned_cols=250  Identities=10%  Similarity=0.048  Sum_probs=159.5

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCe--EEEEe-
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD--FVCST-   82 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~~-   82 (301)
                      .+..++|+|+   +++++++..      + .+.+|+++..+ .+..    ......+ +.+.+++|+|+|++  ++++. 
T Consensus        41 ~~~~~a~spd---g~~l~~~~~------~-~v~~~~~~~~g-~~~~----~~~~~~~-g~~~~~~~spdg~~l~~~~~~~  104 (365)
T 1jof_A           41 PISWMTFDHE---RKNIYGAAM------K-KWSSFAVKSPT-EIVH----EASHPIG-GHPRANDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCSEEEECTT---SSEEEEEEB------T-EEEEEEEEETT-EEEE----EEEEECC-SSGGGGCTTSCCEEEEEEECSS
T ss_pred             CCcEEEECCC---CCEEEEEcc------c-eEEEEEECCCC-CEEE----eeEeecC-CCCccEEECCCCCEEEEEEecC
Confidence            5667888877   455554332      2 67888876322 2211    0011111 23667999999995  44543 


Q ss_pred             ------------cCCcEEEEEEcC-CccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCC-Cccee
Q 022184           83 ------------TNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWP-SLRII  147 (301)
Q Consensus        83 ------------~d~~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~-~~~~~  147 (301)
                                  .++.+.+|++.. ++.........   ..+...+.+++|+|||++|+++.. ++.|++|++. +++..
T Consensus       105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~  181 (365)
T 1jof_A          105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE  181 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             CcceeccceeecCCceEEEEccCCCCcCcceEeeEE---eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence                        688999999974 33211111000   123457899999999998887764 6799999998 66542


Q ss_pred             --cccc--cCCccEEEEEecCCCcEEEEEeC-CCcEEEEeCC--CCceEE---EEeec-C-----CC------CeeEEE-
Q 022184          148 --LDEP--KAHKSVLDMDFSLDSEFLATTST-DGSARIWKTE--DGVAWT---FLTRN-S-----DE------KIELCR-  204 (301)
Q Consensus       148 --~~~~--~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~~---~~~~~-~-----~~------~v~~~~-  204 (301)
                        ..+.  .+...+..++|+|||+++++++. ++.|.+|++.  +++...   .+... .     ..      .+..++ 
T Consensus       182 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  261 (365)
T 1jof_A          182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA  261 (365)
T ss_dssp             EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred             EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence              2222  12456899999999998887764 6899999865  455432   22211 1     11      378899 


Q ss_pred             EccCCCcceEEEEEEeCCc----ceEEEEEcc-CceEee---eeeccCCCcEEEEEcC---CCCEEEEeeCC-CcEEEEe
Q 022184          205 FSKDGTKPFLFCTVQRGDK----ALLAVYDIS-TWNKIG---HKRLLRKPASVLSISL---DGKYLAMGSKD-GDICVVD  272 (301)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~----~~i~~~d~~-~~~~~~---~~~~~~~~v~~~~~s~---~~~~l~~~~~d-~~i~i~~  272 (301)
                      |+|||++++   +...+.+    +.|.+|++. +++...   ....+...+..++|+|   ||++|++++.+ +.|.+|+
T Consensus       262 ~spdG~~l~---v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          262 LTFSGKYMF---ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             ECTTSSEEE---EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             ECCCCCEEE---EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence            999999732   1222222    289999986 555432   1223445567899999   89999999865 8999999


Q ss_pred             CCCce
Q 022184          273 VKKME  277 (301)
Q Consensus       273 ~~~~~  277 (301)
                      ++...
T Consensus       339 ~~~~~  343 (365)
T 1jof_A          339 WKDEF  343 (365)
T ss_dssp             EETTE
T ss_pred             Echhh
Confidence            87653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.87  E-value=2.4e-19  Score=145.72  Aligned_cols=249  Identities=11%  Similarity=0.083  Sum_probs=158.1

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe----------cCCcEEEEEEcCCccccccc
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLL  102 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~~w~~~~~~~~~~~~  102 (301)
                      .++.+.+|+  .....+.      ..+..+..+  .++|+|+|++++++.          .++.|.+||..+.+....+.
T Consensus        29 ~d~~v~v~D--~~t~~~~------~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~   98 (361)
T 2oiz_A           29 TESRVHVYD--YTNGKFL------GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS   98 (361)
T ss_dssp             GGCEEEEEE--TTTCCEE------EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred             ccCeEEEEE--CCCCeEE------EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence            355566664  4333332      223334444  899999999999886          35679999988766533332


Q ss_pred             cccCCCCCCCCCeeEEEEeeCCCEEEEeec--CCeEEEEeCCCcceecc-cccCCccEEEEEecCCC-cEEEEEeCCCcE
Q 022184          103 AKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILD-EPKAHKSVLDMDFSLDS-EFLATTSTDGSA  178 (301)
Q Consensus       103 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i  178 (301)
                      ... ....+......++++|||++|+++..  ++.|.+||+.+++.+.. +...  ....+.+.|++ ..+++.+.||.+
T Consensus        99 ~~~-~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~  175 (361)
T 2oiz_A           99 LPP-KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGL  175 (361)
T ss_dssp             ECT-TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSE
T ss_pred             cCc-cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcE
Confidence            111 11112345678999999999998874  58999999998877655 4321  11123334433 233444444444


Q ss_pred             EEEeC------------------------------------------------CCCceE--EEEeecC---------CCC
Q 022184          179 RIWKT------------------------------------------------EDGVAW--TFLTRNS---------DEK  199 (301)
Q Consensus       179 ~i~d~------------------------------------------------~~~~~~--~~~~~~~---------~~~  199 (301)
                      .+|++                                                ......  ..+....         ...
T Consensus       176 ~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g  255 (361)
T 2oiz_A          176 LTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG  255 (361)
T ss_dssp             EEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred             EEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence            44443                                                322111  1110000         001


Q ss_pred             eeEEEEccCCCcceEEEEEE-eC-------CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184          200 IELCRFSKDGTKPFLFCTVQ-RG-------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (301)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~-~~-------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~  271 (301)
                      ...++|+|+++.+|+  ... .+       ....|.+||+.+++.+..+..+.  +..++|+|||++|++++. +.|.+|
T Consensus       256 ~~~~a~~~dg~~lyv--~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~  330 (361)
T 2oiz_A          256 YNLVGLHRASGRMYV--FMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVY  330 (361)
T ss_dssp             SSCEEEETTTTEEEE--EEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEE
T ss_pred             eeEEEEecCCCeEEE--EEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEE
Confidence            123788999887442  111 11       14589999999999998888766  899999999999999887 999999


Q ss_pred             eCCCc--eeeccccccccCccEEEEEEccCCC
Q 022184          272 DVKKM--EINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       272 ~~~~~--~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |..++  +.+..+. .. ......++++|||+
T Consensus       331 D~~t~~l~~~~~i~-~~-G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          331 DISQPEPKLLRTIE-GA-AEASLQVQFHPVGG  360 (361)
T ss_dssp             ECSSSSCEEEEEET-TS-CSSEEEEEECCCSC
T ss_pred             ECCCCcceeeEEec-cC-CCCcEEEEecCCCC
Confidence            99999  8887752 33 56788999999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.86  E-value=1.9e-19  Score=158.15  Aligned_cols=263  Identities=14%  Similarity=0.039  Sum_probs=167.8

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcce---------EEEEC--
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPM---------TIAVN--   72 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~--   72 (301)
                      ...+...+|+++   ..+++.+.    ...++...||.....+.        ...+..|...+.         ...|+  
T Consensus        23 ~~~~~~~~~s~~---~~~~~~~~----~~~~~~~~l~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~S   87 (662)
T 3azo_A           23 SGRPACVGAVGD---EVWWVAPR----PAEAGRATLVRRRADGA--------EESALPAPWNVRNRVFEYSGFPWAGVPR   87 (662)
T ss_dssp             CSCCEEEEEETT---EEEEEEEE----TTTTTEEEEEEECTTSC--------EEESSCTTCCBCCCGGGTCCCCEEEECC
T ss_pred             CCccceeEEcCC---eEEEEecC----cccCCcEEEEEECCCCC--------cceeCCCCccccccccccCCccceeeee
Confidence            456788888855   33444321    01345668888743321        122334444444         55565  


Q ss_pred             CCCCe-EEEEec-CCcEEEEEEc--C-CccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC----------CeEE
Q 022184           73 PSGDD-FVCSTT-NGGCKLFEVY--G-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----------GHLR  137 (301)
Q Consensus        73 ~~~~~-l~~~~~-d~~i~~w~~~--~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~  137 (301)
                      |||+. |+.++. +..|+++++.  + ++. ..+..  .....+...+..++|+|||+.|++++.+          ..|+
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~--~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~  164 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTP--VSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA  164 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSC--CCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccC--CccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence            99998 776654 3445555543  1 221 11111  0000134567899999999999998876          5899


Q ss_pred             EEeCCC------cceecccc-cCCccEEEEEecCCCcEEEEEeCC--------CcEEEEeCC-CC--ceEEEEeecCCCC
Q 022184          138 IMHWPS------LRIILDEP-KAHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTE-DG--VAWTFLTRNSDEK  199 (301)
Q Consensus       138 v~d~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~-~~--~~~~~~~~~~~~~  199 (301)
                      +||+.+      ++. ..+. .+...+..++|+|||++|+.++.+        ..|++||+. ++  .....+...+...
T Consensus       165 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~  243 (662)
T 3azo_A          165 AVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA  243 (662)
T ss_dssp             EEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred             EEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence            999987      554 3444 555678889999999999988755        379999998 56  2344444444456


Q ss_pred             eeEEEEccCCCcceEEEEEEeCCcc--eEEEEEccCceEeeeeeccCCC--------cEEEEEcCCCCEEEEeeCCCcEE
Q 022184          200 IELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKP--------ASVLSISLDGKYLAMGSKDGDIC  269 (301)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~~~~~d~~i~  269 (301)
                      +..++|+|||+.     ++++..++  .|.+||+.+++.......+...        +..++|+|+++++++++. +.++
T Consensus       244 ~~~~~~spdg~l-----~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~  317 (662)
T 3azo_A          244 IAQAEWAPDGSL-----IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAV  317 (662)
T ss_dssp             EEEEEECTTSCE-----EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCE
T ss_pred             EcceEECCCCeE-----EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccE
Confidence            899999999994     45556666  7777887666654333322211        467899999999999988 9988


Q ss_pred             EE--eCCCceeeccccccccCccEEEE
Q 022184          270 VV--DVKKMEINHWSKRLHLGTSIALV  294 (301)
Q Consensus       270 i~--~~~~~~~~~~~~~~~~~~~v~~~  294 (301)
                      ||  |+.+++.. .+ ..+ ...+..+
T Consensus       318 l~~~d~~~~~~~-~l-~~~-~~~~~~~  341 (662)
T 3azo_A          318 LGILDPESGELV-DA-AGP-WTEWAAT  341 (662)
T ss_dssp             EEEEETTTTEEE-EC-CSS-CCEEEEE
T ss_pred             EEEEECCCCcEE-Ee-cCC-CCeEEEE
Confidence            88  66666643 33 344 5566665

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.85  E-value=6.9e-21  Score=156.87  Aligned_cols=266  Identities=8%  Similarity=0.024  Sum_probs=164.1

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      +.+++|+|+   ++.+++...     .++...+|.++..+.....      ...++......+.|+|+|++|+.++.++.
T Consensus        38 ~~~~~~Spd---G~~l~~~~~-----~~g~~~l~~~d~~~~~~~~------l~~~~~~~~~~~~~spdg~~l~~~~~~~~  103 (396)
T 3c5m_A           38 FYQKCFTQD---GKKLLFAGD-----FDGNRNYYLLNLETQQAVQ------LTEGKGDNTFGGFISTDERAFFYVKNELN  103 (396)
T ss_dssp             TTSCCBCTT---SCEEEEEEC-----TTSSCEEEEEETTTTEEEE------CCCSSCBCTTTCEECTTSSEEEEEETTTE
T ss_pred             eecCcCCCC---CCEEEEEEe-----cCCCceEEEEECCCCcEEE------eecCCCCccccceECCCCCEEEEEEcCCc
Confidence            566788877   555555332     1223356766665543311      12222222334889999999999999989


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeE-------------------EEEeeCCCEEEEe-----ecCCeEEEEeCC
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKC-------------------LSFSVDGSRFAAG-----GVDGHLRIMHWP  142 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~-----~~dg~i~v~d~~  142 (301)
                      |++|++.+++.......       +......                   +.|+|+++.++..     ..+..|++||+.
T Consensus       104 l~~~d~~~~~~~~~~~~-------~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~  176 (396)
T 3c5m_A          104 LMKVDLETLEEQVIYTV-------DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE  176 (396)
T ss_dssp             EEEEETTTCCEEEEEEC-------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT
T ss_pred             EEEEECCCCCcEEEEec-------ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECC
Confidence            99999887653211110       0011111                   3467777766554     356789999998


Q ss_pred             CcceecccccCCccEEEEEecC-CCcEEEEEeCC------CcEEEEeCCCCceEEEEeecC-CCCeeEEEEccCCCcceE
Q 022184          143 SLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~  214 (301)
                      +++... +..+...+..+.|+| +++.|+..+.+      ..|.+||+..++... +..+. ...+..++|+|+|+.+++
T Consensus       177 ~g~~~~-~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~  254 (396)
T 3c5m_A          177 TGELEV-IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAY  254 (396)
T ss_dssp             TCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEE
T ss_pred             CCcEEe-eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEE
Confidence            877543 334556789999999 78877776643      368889987665333 22222 224778999999997332


Q ss_pred             EEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcC-CCCEEEEee----------------CCCcEEEEeCCCce
Q 022184          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGKYLAMGS----------------KDGDICVVDVKKME  277 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~d~~i~i~~~~~~~  277 (301)
                      .....+...+.|.+||+.+++...... .. ... +.|+| ||+++++++                .+..|++||+.+++
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          255 VSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             EEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             EecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence            111111122559999998876543222 12 233 89999 999888764                34689999998887


Q ss_pred             eeccccccccCc-----------cEEEEEEccCCC
Q 022184          278 INHWSKRLHLGT-----------SIALVEFCPTQR  301 (301)
Q Consensus       278 ~~~~~~~~~~~~-----------~v~~~~~spdg~  301 (301)
                      .....  .+ ..           .+..++|+|||+
T Consensus       332 ~~~l~--~~-~~~~~~~~~~~~~~~~~~~~s~dg~  363 (396)
T 3c5m_A          332 AQKLC--KH-STSWDVLDGDRQITHPHPSFTPNDD  363 (396)
T ss_dssp             CCEEE--EC-CCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred             eEEcc--CC-CCccccccccccCCCCCceEccCCC
Confidence            54332  22 22           256788999985

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=1.9e-19  Score=147.91  Aligned_cols=200  Identities=12%  Similarity=-0.029  Sum_probs=135.4

Q ss_pred             EEECCCCCeEEEEec-CCc--EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc
Q 022184           69 IAVNPSGDDFVCSTT-NGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (301)
Q Consensus        69 ~~~~~~~~~l~~~~~-d~~--i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  145 (301)
                      .+|+|||++|+.++. ++.  |.+||+.+++.....       ..+...+..+.|+|||+.|++++.++.|++||+.+++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~  113 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-------EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE  113 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-------CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-------eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            889999999998887 664  777777666542111       1122333457899999999999999999999999887


Q ss_pred             eecccccCCccEEEE--EecCCCcEEEEEe----------------------CCCcEEEEeCCCCceEEEEeecCCCCee
Q 022184          146 IILDEPKAHKSVLDM--DFSLDSEFLATTS----------------------TDGSARIWKTEDGVAWTFLTRNSDEKIE  201 (301)
Q Consensus       146 ~~~~~~~~~~~i~~~--~~~~~~~~l~~~~----------------------~d~~i~i~d~~~~~~~~~~~~~~~~~v~  201 (301)
                      .......+...+...  .++|++++++...                      .+..|.+||+.+++...... + ...+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~-~~~~~  191 (388)
T 3pe7_A          114 ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-E-NQWLG  191 (388)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-E-SSCEE
T ss_pred             ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-C-Ccccc
Confidence            654444444444333  3489999887432                      34679999999887654443 2 33588


Q ss_pred             EEEEcc-CCCcceEEEEEEeCC---cceEEEEEccCceEeeeeeccC--CCcEEEEEcCCCCEEEEeeCC-C----cEEE
Q 022184          202 LCRFSK-DGTKPFLFCTVQRGD---KALLAVYDISTWNKIGHKRLLR--KPASVLSISLDGKYLAMGSKD-G----DICV  270 (301)
Q Consensus       202 ~~~~~~-~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d-~----~i~i  270 (301)
                      .++|+| +|+.+.+  ......   ...|.++|...++.. .+..+.  ..+..++|+|||+.|+..+.+ +    .|++
T Consensus       192 ~~~~sp~dg~~l~~--~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (388)
T 3pe7_A          192 HPIYRPYDDSTVAF--CHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS  268 (388)
T ss_dssp             EEEEETTEEEEEEE--EECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred             ccEECCCCCCEEEE--EEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence            999999 9987321  111111   447888888765443 233333  247788999999988665432 2    3999


Q ss_pred             EeCCCceeec
Q 022184          271 VDVKKMEINH  280 (301)
Q Consensus       271 ~~~~~~~~~~  280 (301)
                      ||+.+++...
T Consensus       269 ~d~~~g~~~~  278 (388)
T 3pe7_A          269 ADPETLENRQ  278 (388)
T ss_dssp             ECTTTCCEEE
T ss_pred             EecCCCceEE
Confidence            9999887543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=4.4e-18  Score=136.75  Aligned_cols=255  Identities=11%  Similarity=0.118  Sum_probs=173.3

Q ss_pred             ceeEEEeeeecCCCccEEEecCCcccc------------------CCcCceeEeeeCCCcceeeeCCceeccccccCCcc
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRAS------------------SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDP   66 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v   66 (301)
                      +.+.++++.++   +++++++......                  ..++  .|+.+++....+..     ..-.++...+
T Consensus        24 ~~v~~va~d~~---G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~g~~~~-----~~~~~~~~~p   93 (329)
T 3fvz_A           24 GQVSGVALDSK---NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEED--TILVIDPNNAEILQ-----SSGKNLFYLP   93 (329)
T ss_dssp             SCEEEEEECTT---CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSC--CEEEECTTTCCEEE-----EECTTTCSSE
T ss_pred             CCceEEEECCC---CCEEEEeCCCCeEEeeccCcceeecccccccccCC--cEEEEECCCCeEEe-----ccCCCccCCc
Confidence            56889999977   5666665443210                  0112  35555555433321     1112455678


Q ss_pred             eEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccC---CCCCCCCCeeEEEEee-CCCEEEEee-cCCeEEEEeC
Q 022184           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKM---PPLQDAGPQKCLSFSV-DGSRFAAGG-VDGHLRIMHW  141 (301)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~-~~~~l~~~~-~dg~i~v~d~  141 (301)
                      ..++++|+|+.+++...++.|++|+.+.............   ....+......++++| +++++++.+ .++.|++|+ 
T Consensus        94 ~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-  172 (329)
T 3fvz_A           94 HGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-  172 (329)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred             eEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence            9999999999888887889999999765421111111000   0012334688999999 788777776 689999999 


Q ss_pred             CCcceeccccc----------CCccEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeec-CCCCeeEEEEcc--
Q 022184          142 PSLRIILDEPK----------AHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSK--  207 (301)
Q Consensus       142 ~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~--  207 (301)
                      .+++.+..+..          +......++++|+ +.++++...++.|++||..+++.+..+... ....+..++|+|  
T Consensus       173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~  252 (329)
T 3fvz_A          173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGF  252 (329)
T ss_dssp             TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTE
T ss_pred             CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCE
Confidence            45655544421          1124889999998 777777778899999999988888877532 334588899999  


Q ss_pred             ----CCCcceEEEEEEeCCcceEEEEEccCceEeeeee---ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          208 ----DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       208 ----~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                          +++.     .++...+..|.+||..+++.+..+.   .+...+..++++|+|.++++...+++|++|++..
T Consensus       253 ~~~~~g~~-----~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          253 LFAVNGKP-----YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEECCC-----CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEeCCCE-----EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                3321     1223345689999999998877663   4456689999999998888888899999999854

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.83  E-value=4.4e-18  Score=136.74  Aligned_cols=227  Identities=10%  Similarity=-0.012  Sum_probs=164.3

Q ss_pred             CCcceEEEECCCCCeEEEEecC------------------------CcEEEEEEcCCccccccccccCCCCCCCCCeeEE
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTN------------------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCL  118 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~  118 (301)
                      -+.+.+++++|+|+.+++...+                        ++|.+||..+++......      ..+...+..+
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~------~~~~~~p~gi   96 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG------KNLFYLPHGL   96 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC------TTTCSSEEEE
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC------CCccCCceEE
Confidence            5679999999999988887766                        469999987666422111      0123467899


Q ss_pred             EEeeCCCEEEEeecCCeEEEEeCCCcc-eeccc---------ccCCccEEEEEecC-CCcEEEEEe-CCCcEEEEeCCCC
Q 022184          119 SFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDE---------PKAHKSVLDMDFSL-DSEFLATTS-TDGSARIWKTEDG  186 (301)
Q Consensus       119 ~~s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~  186 (301)
                      +++|+|+++++...++.|++||..... .+..+         ..+......++++| +++++++.+ .++.|++|| .++
T Consensus        97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A           97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            999999988888888999999975442 23322         12233688999999 788888876 689999999 567


Q ss_pred             ceEEEEeecCC---------CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee--ccCCCcEEEEEcC-
Q 022184          187 VAWTFLTRNSD---------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISL-  254 (301)
Q Consensus       187 ~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~-  254 (301)
                      +.+..+.....         ..+..++++|++..+    .++...++.|++||..+++.+..+.  .+...+..++|+| 
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l----~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg  251 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQL----CVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPG  251 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEE----EEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETT
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEE----EEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCC
Confidence            77666643211         237899999994442    4667788999999999888776663  3446788999999 


Q ss_pred             -----CCCEEEEeeCCCcEEEEeCCCceeecccc--ccccCccEEEEEEccCCC
Q 022184          255 -----DGKYLAMGSKDGDICVVDVKKMEINHWSK--RLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       255 -----~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~~~v~~~~~spdg~  301 (301)
                           +|+..++...+..|++|+..+++.+..+.  ..+ ...+.+++++|||+
T Consensus       252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~~~p~~ia~~~dG~  304 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH-FDMPHDIVASEDGT  304 (329)
T ss_dssp             EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC-CSSEEEEEECTTSE
T ss_pred             EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc-cCCeeEEEECCCCC
Confidence                 33333333445689999999998887653  234 56789999999983

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=2.5e-17  Score=129.68  Aligned_cols=243  Identities=11%  Similarity=0.047  Sum_probs=159.6

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEE-CCCCCeEEEEec-
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-NPSGDDFVCSTT-   83 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~~~-   83 (301)
                      .+.++++.++   +.++++..      .++.+.+|  ++.......... .....+|...+..+++ .++++.+++... 
T Consensus        31 ~p~~v~~~~~---g~l~v~~~------~~~~i~~~--d~~g~~~~~~~~-~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~   98 (286)
T 1q7f_A           31 EPSGVAVNAQ---NDIIVADT------NNHRIQIF--DKEGRFKFQFGE-CGKRDSQLLYPNRVAVVRNSGDIIVTERSP   98 (286)
T ss_dssp             CEEEEEECTT---CCEEEEEG------GGTEEEEE--CTTSCEEEEECC-BSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred             CCceEEECCC---CCEEEEEC------CCCEEEEE--CCCCcEEEEecc-cCCCcccccCceEEEEEcCCCeEEEEcCCC
Confidence            4677888765   44555433      23344454  444433211110 0011245567899999 567766666533 


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc--cCCccEEEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP--KAHKSVLDMD  161 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~  161 (301)
                      ++.|++|+ .+++....+.      ..+...+..++++|+|+++++...++.|.+||.. ++....+.  .+...+..++
T Consensus        99 ~~~i~~~d-~~g~~~~~~~------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~  170 (286)
T 1q7f_A           99 THQIQIYN-QYGQFVRKFG------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVV  170 (286)
T ss_dssp             GCEEEEEC-TTSCEEEEEC------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEE
T ss_pred             CCEEEEEC-CCCcEEEEec------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEE
Confidence            78899999 4443321111      1123567899999999988877778999999964 44444332  2334689999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-CCCeeEEEEccCCCcceEEEEEEeCCcc-eEEEEEccCceEeee
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKA-LLAVYDISTWNKIGH  239 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~  239 (301)
                      ++|+++++++...++.|++||. .++.+..+.... ...+..++++++|+.     .++...++ .|.+||.. ++.+..
T Consensus       171 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l-----~v~~~~~~~~i~~~~~~-g~~~~~  243 (286)
T 1q7f_A          171 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEI-----LIADNHNNFNLTIFTQD-GQLISA  243 (286)
T ss_dssp             ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCE-----EEEECSSSCEEEEECTT-SCEEEE
T ss_pred             ECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCE-----EEEeCCCCEEEEEECCC-CCEEEE
Confidence            9999998888888899999997 455555554321 235889999999974     45555564 99999964 555555


Q ss_pred             eeccC--CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          240 KRLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       240 ~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      +..+.  ..+..++++|+|+++++ +.++.|++|++...
T Consensus       244 ~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          244 LESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            54443  24778999999987666 67899999998654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=1.5e-17  Score=130.88  Aligned_cols=231  Identities=9%  Similarity=0.020  Sum_probs=160.1

Q ss_pred             cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEe-eCCCEEEEeec-CCeEE
Q 022184           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS-VDGSRFAAGGV-DGHLR  137 (301)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~-dg~i~  137 (301)
                      .++...+.+++++++++.+++...++.|.+||.+.. ....+.. ......+...+..++++ ++++++++... ++.|+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~-~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGE-CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECC-BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEecc-cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            355677999999999998888788899999997633 2111111 00111223467899995 67766665543 78999


Q ss_pred             EEeCCCcceeccccc-CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-cCCCCeeEEEEccCCCcceEE
Q 022184          138 IMHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       138 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      +|| .+++.+..+.. +...+..++++|+++++++...++.|.+||.. ++.+..+.. .....+..++++|+|+.    
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l----  177 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI----  177 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE----
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE----
Confidence            999 55665544432 23568999999999988887788999999964 555555542 22235889999999874    


Q ss_pred             EEEEeCCcceEEEEEccCceEeeeeecc--CCCcEEEEEcCCCCEEEEeeCCC-cEEEEeCCCceeeccccccccCccEE
Q 022184          216 CTVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDG-DICVVDVKKMEINHWSKRLHLGTSIA  292 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~v~  292 (301)
                       .++...++.|.+||... +.+..+...  ...+..++++|+|+++++...++ .|.+|+.. ++.+..+........+.
T Consensus       178 -~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~  254 (286)
T 1q7f_A          178 -FISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCF  254 (286)
T ss_dssp             -EEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEE
T ss_pred             -EEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcce
Confidence             45666788999999854 444444333  25688999999999888887776 99999964 44444442221123478


Q ss_pred             EEEEccCCC
Q 022184          293 LVEFCPTQR  301 (301)
Q Consensus       293 ~~~~spdg~  301 (301)
                      +++++|||+
T Consensus       255 ~i~~~~~g~  263 (286)
T 1q7f_A          255 DVALMDDGS  263 (286)
T ss_dssp             EEEEETTTE
T ss_pred             eEEECCCCc
Confidence            999999984

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.82  E-value=7.1e-18  Score=135.76  Aligned_cols=262  Identities=12%  Similarity=0.016  Sum_probs=171.1

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..+|.+++|+++   ...++..      ..++.++.|.    ...       ...+..+...+.+++|+|+|+.++++..
T Consensus         5 ~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~g~l~~~~~~   64 (333)
T 2dg1_A            5 QQDLPTLFYSGK---SNSAVPI------ISESELQTIT----AEP-------WLEISKKGLQLEGLNFDRQGQLFLLDVF   64 (333)
T ss_dssp             -CCCCBCCSCGG---GGCSSCC------CCGGGSCEEE----CEE-------EEEEESSCCCEEEEEECTTSCEEEEETT
T ss_pred             ccccceeeecCC---ccceeEE------eecccCcccc----cce-------eEEEeccCccccCcEECCCCCEEEEECC
Confidence            456778888866   2222221      1345556661    111       1224455667899999999997778888


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC----CeEEEEeCCCcceecccc--cCCccE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEP--KAHKSV  157 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~--~~~~~i  157 (301)
                      ++.|.+||.++++......       .+...+.+++++|+++++++...+    +.|.+||.++++....+.  .....+
T Consensus        65 ~~~i~~~d~~~~~~~~~~~-------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  137 (333)
T 2dg1_A           65 EGNIFKINPETKEIKRPFV-------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI  137 (333)
T ss_dssp             TCEEEEECTTTCCEEEEEE-------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred             CCEEEEEeCCCCcEEEEee-------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence            8999999987665421110       134678999999999887777666    689999988766432221  233578


Q ss_pred             EEEEecCCCcEEEEEeC------CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184          158 LDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  231 (301)
                      .+++++|+|+++++...      .+.|..+|..+++...... .. ..+..++|+|+++.+    .++...++.|.+||+
T Consensus       138 ~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~i~~~~dg~~l----~v~~~~~~~i~~~d~  211 (333)
T 2dg1_A          138 DDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NI-SVANGIALSTDEKVL----WVTETTANRLHRIAL  211 (333)
T ss_dssp             EEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EE-SSEEEEEECTTSSEE----EEEEGGGTEEEEEEE
T ss_pred             cceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-CC-CcccceEECCCCCEE----EEEeCCCCeEEEEEe
Confidence            99999999987776653      2556667765555433322 21 247899999999863    234456789999998


Q ss_pred             cC-ceEeee-----eecc--CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCc------cEEEEEEc
Q 022184          232 ST-WNKIGH-----KRLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT------SIALVEFC  297 (301)
Q Consensus       232 ~~-~~~~~~-----~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~------~v~~~~~s  297 (301)
                      .+ +..+..     ....  ...+..++++++|+++++...++.|.+||.. ++.+..+. .+ ..      .+.+++|+
T Consensus       212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~-~~-~~~~g~~~~~~~~~~~  288 (333)
T 2dg1_A          212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQIL-IP-GRDEGHMLRSTHPQFI  288 (333)
T ss_dssp             CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEE-CT-TGGGTCSCBCCEEEEC
T ss_pred             cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEE-cC-CCccccccCcceEEEC
Confidence            63 222111     1111  1357789999999988887778899999984 55444432 22 21      68899999


Q ss_pred             cCCC
Q 022184          298 PTQR  301 (301)
Q Consensus       298 pdg~  301 (301)
                      |||+
T Consensus       289 ~dg~  292 (333)
T 2dg1_A          289 PGTN  292 (333)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            9873

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.82  E-value=2.1e-18  Score=152.53  Aligned_cols=226  Identities=12%  Similarity=0.050  Sum_probs=156.8

Q ss_pred             ccCCcceEEEECCCCCeEEEEecCC-----cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      +|...+..++|||||++||.+..++     .|++||+.+++......        ....+..++|+|||+.|+.++.++.
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--------~~~~~~~~~wspDg~~l~~~~~~~~  193 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--------ERVKFSCMAWTHDGKGMFYNAYPQQ  193 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--------EEECSCCEEECTTSSEEEEEECCCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--------cCcccceEEEEeCCCEEEEEEECCc
Confidence            4555788999999999998776543     89999998876532211        1122567999999999999887765


Q ss_pred             ----------------EEEEeCCCccee----cccccCCccEEEEEecCCCcEEEEEeC-----CCcEEEEeCCC-----
Q 022184          136 ----------------LRIMHWPSLRII----LDEPKAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTED-----  185 (301)
Q Consensus       136 ----------------i~v~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~-----  185 (301)
                                      |++|++.+++..    .....+...+..+.|+|||++|+..+.     +..|.+||+.+     
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  273 (710)
T 2xdw_A          194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI  273 (710)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred             cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence                            999999876532    122223345789999999999887764     56899999986     


Q ss_pred             -Cc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEe--CCcceEEEEEccCceE--eeeeeccCC--CcEEEEEcCCCC
Q 022184          186 -GV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNK--IGHKRLLRK--PASVLSISLDGK  257 (301)
Q Consensus       186 -~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~~~--~~~~~~~~~--~v~~~~~s~~~~  257 (301)
                       +. ....+..+... +.. .|+|+|+.+++   .+.  .....|.+||+.++..  ...+..+..  .+..++|++++.
T Consensus       274 ~~~~~~~~l~~~~~~-~~~-~~s~dg~~l~~---~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  348 (710)
T 2xdw_A          274 TGILKWVKLIDNFEG-EYD-YVTNEGTVFTF---KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF  348 (710)
T ss_dssp             CSSCCCEEEECSSSS-CEE-EEEEETTEEEE---EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred             CCccceEEeeCCCCc-EEE-EEeccCCEEEE---EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence             43 34555544332 333 58999987432   221  1245799999987642  233333433  577899998888


Q ss_pred             EEEEeeCCCc--EEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          258 YLAMGSKDGD--ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       258 ~l~~~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++++...++.  |.+|++.+++.+..+ ..+ ...+..++++||++
T Consensus       349 lv~~~~~~g~~~l~~~~~~~g~~~~~l-~~~-~~~v~~~~~s~d~~  392 (710)
T 2xdw_A          349 LVLCYLHDVKNTLQLHDLATGALLKIF-PLE-VGSVVGYSGQKKDT  392 (710)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEE-CCC-SSEEEEEECCTTCS
T ss_pred             EEEEEEECCEEEEEEEECCCCCEEEec-CCC-CceEEEEecCCCCC
Confidence            8888888874  667787677655554 345 67789999999873

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=8.6e-19  Score=153.96  Aligned_cols=229  Identities=10%  Similarity=0.003  Sum_probs=154.5

Q ss_pred             eccccccCCcceEEEECCCCCeEEEE--ecCCcEEEEEEcCCccccccccccCCCCCCCCCee---------EEEEe--e
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCS--TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK---------CLSFS--V  122 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~--~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~s--~  122 (301)
                      ...+.+|...+..++|++++-+++..  +.++...||....+.....+.       .+...+.         ...|+  |
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~SP   88 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESAL-------PAPWNVRNRVFEYSGFPWAGVPRP   88 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESS-------CTTCCBCCCGGGTCCCCEEEECCS
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeC-------CCCccccccccccCCccceeeeec
Confidence            44567889999999999876666666  457889999974433222211       1222223         45565  9


Q ss_pred             CCCE-EEEeec-CCeEEEEeCC--C-cceeccccc-----CCccEEEEEecCCCcEEEEEeCC----------CcEEEEe
Q 022184          123 DGSR-FAAGGV-DGHLRIMHWP--S-LRIILDEPK-----AHKSVLDMDFSLDSEFLATTSTD----------GSARIWK  182 (301)
Q Consensus       123 ~~~~-l~~~~~-dg~i~v~d~~--~-~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d----------~~i~i~d  182 (301)
                      ||+. |+.++. +..|.++++.  . ++. ..+..     +...+..++|+|||+.|++++.+          ..|++||
T Consensus        89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~  167 (662)
T 3azo_A           89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP  167 (662)
T ss_dssp             SSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred             CCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence            9998 776654 5677777775  2 433 34444     45678899999999999998876          5899999


Q ss_pred             CCC------CceEEEEe-ecCCCCeeEEEEccCCCcceEEEEEEeC--------CcceEEEEEcc-Cc---eEeeeeecc
Q 022184          183 TED------GVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRG--------DKALLAVYDIS-TW---NKIGHKRLL  243 (301)
Q Consensus       183 ~~~------~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~d~~-~~---~~~~~~~~~  243 (301)
                      +.+      ++.. .+. .+ ...+..++|+|||+++     +..+        ....|.+||+. ++   +.......+
T Consensus       168 ~~~~~~~~~~~~~-~l~~~~-~~~~~~~~~SpDG~~l-----a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          168 LDGSAAADRSAVR-ELSDDA-HRFVTGPRLSPDGRQA-----VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             TTSTTTTCGGGSE-ESSCSC-SSEECCCEECTTSSEE-----EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             CCCCccccCCcee-EEEecC-CCcccCceECCCCCEE-----EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            988      5543 333 32 3457889999999973     3222        12589999998 56   443333444


Q ss_pred             CCCcEEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeeccccccccCcc--------EEEEEEccCCC
Q 022184          244 RKPASVLSISLDGKYLAMGSKDG--DICVVDVKKMEINHWSKRLHLGTS--------IALVEFCPTQR  301 (301)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~--------v~~~~~spdg~  301 (301)
                      ...+..+.|+|||++++++..++  .|.+||+.+++...... .+ ...        +..++|+|+|+
T Consensus       241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~-~~~~~p~w~~~~~~~~~~~~~~  306 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-RE-EEFAGPLWTPGMRWFAPLANGL  306 (662)
T ss_dssp             TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CS-SBSSCCCCSTTCCSEEECTTSC
T ss_pred             CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-cc-ccccCccccccCceEeEeCCCE
Confidence            67899999999999888887787  67777776776554432 22 211        56788888764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=7.3e-18  Score=136.42  Aligned_cols=208  Identities=13%  Similarity=0.096  Sum_probs=138.3

Q ss_pred             CcceEEEECCCCCeEEEEecC---Cc--EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC-----
Q 022184           64 GDPMTIAVNPSGDDFVCSTTN---GG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----  133 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d---~~--i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----  133 (301)
                      ..+..++|+|||++|+.++.+   +.  |.+|++.+++.. .+.       .+.. +..++|+|||+.|+.++.+     
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~-~l~-------~~~~-~~~~~wspdg~~l~~~~~~~~~~~  129 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK-KIL-------EAKN-IRSLEWNEDSRKLLIVGFKRREDE  129 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE-EEE-------EESE-EEEEEECTTSSEEEEEEECCCC--
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE-EEE-------cCCC-ccceeECCCCCEEEEEEccCCCcC
Confidence            458899999999999987654   33  666676655431 111       1223 8899999999999887642     


Q ss_pred             ----------------------CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCC-------cEEEEeCC
Q 022184          134 ----------------------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-------SARIWKTE  184 (301)
Q Consensus       134 ----------------------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~i~d~~  184 (301)
                                            ..|++||+.+++.+..+.. . .+..++|+||| +++++..+.       ...||.+.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             -------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             CcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence                                  5799999988776334433 3 78899999999 777776542       34555544


Q ss_pred             CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC-----CcceEEEEEccCceEeeeeeccCCCcEE-EEEcCCCCE
Q 022184          185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-----DKALLAVYDISTWNKIGHKRLLRKPASV-LSISLDGKY  258 (301)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~v~~-~~~s~~~~~  258 (301)
                      +++ ...+..+  ..+..+  +|+|+.+++  .....     ....|.+||  +++.......+...+.. +.|+ |+ +
T Consensus       207 ~~~-~~~l~~~--~~~~~~--spdg~~l~~--~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~  275 (347)
T 2gop_A          207 DGK-EEKMFEK--VSFYAV--DSDGERILL--YGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-V  275 (347)
T ss_dssp             TTE-EEEEEEE--ESEEEE--EECSSCEEE--EECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-E
T ss_pred             CCc-eEEeccC--cceeeE--CCCCCEEEE--EEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-E
Confidence            444 3444333  334444  999997321  11111     135788898  55544444445567776 8999 88 8


Q ss_pred             EEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          259 LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       259 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      +++++.++.++|| +.+++.....  .+ ...|.+++|+|
T Consensus       276 ~~~~~~~~~~~l~-~~~g~~~~~~--~~-~~~v~~~~~s~  311 (347)
T 2gop_A          276 YFTLFEEGSVNLY-IWDGEIKPIA--KG-RHWIMGFDVDE  311 (347)
T ss_dssp             EEEEEETTEEEEE-EESSSEEEEE--CS-SSEEEEEEESS
T ss_pred             EEEEecCCcEEEE-EcCCceEEEe--cC-CCeEEeeeeeC
Confidence            8999999999999 8766554332  34 57788999987

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.80  E-value=1.5e-16  Score=125.90  Aligned_cols=239  Identities=10%  Similarity=0.073  Sum_probs=160.1

Q ss_pred             eEEEeeeecCCCcc-EEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC
Q 022184            7 VTCGSWIKRPENVN-LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (301)
Q Consensus         7 v~~~~w~~~~~~~~-~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (301)
                      ..+++|.++   ++ +++++..      .+  .|+.|++.+. ..       .+..+...+.+++++|+|+++++...++
T Consensus        30 ~eg~~~d~~---g~~l~~~~~~------~~--~i~~~~~~~~-~~-------~~~~~~~~~~~l~~~~dg~l~v~~~~~~   90 (296)
T 3e5z_A           30 TEGPVYVPA---RSAVIFSDVR------QN--RTWAWSDDGQ-LS-------PEMHPSHHQNGHCLNKQGHLIACSHGLR   90 (296)
T ss_dssp             EEEEEEEGG---GTEEEEEEGG------GT--EEEEEETTSC-EE-------EEESSCSSEEEEEECTTCCEEEEETTTT
T ss_pred             ccCCeEeCC---CCEEEEEeCC------CC--EEEEEECCCC-eE-------EEECCCCCcceeeECCCCcEEEEecCCC
Confidence            467889977   54 5555442      23  4555555543 21       1334567799999999999877776678


Q ss_pred             cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEE----ee-------------cCCeEEEEeCCCcceec
Q 022184           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA----GG-------------VDGHLRIMHWPSLRIIL  148 (301)
Q Consensus        86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~-------------~dg~i~v~d~~~~~~~~  148 (301)
                      .|.+||..+++........   .......+..++++|+|+++++    ++             ..+.|..++.. ++. .
T Consensus        91 ~i~~~d~~~g~~~~~~~~~---~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~  165 (296)
T 3e5z_A           91 RLERQREPGGEWESIADSF---EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-S  165 (296)
T ss_dssp             EEEEECSTTCCEEEEECEE---TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-E
T ss_pred             eEEEEcCCCCcEEEEeecc---CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-E
Confidence            8999998666542211100   0011235678999999998887    33             13456666654 433 3


Q ss_pred             ccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCce---EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc
Q 022184          149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVA---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (301)
Q Consensus       149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  224 (301)
                      .+..+......++|+|+++.+++.+.++.|.+|++. +++.   ...+ ......+..++++++|+.      ..+. ++
T Consensus       166 ~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l------~v~~-~~  237 (296)
T 3e5z_A          166 APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLI------WASA-GD  237 (296)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCE------EEEE-TT
T ss_pred             EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCE------EEEc-CC
Confidence            334445567899999999988777778999999997 4544   2333 223345778999999984      2223 77


Q ss_pred             eEEEEEccCceEeeeeeccCCCcEEEEE-cCCCCEEEEeeCCCcEEEEeCCCceeec
Q 022184          225 LLAVYDISTWNKIGHKRLLRKPASVLSI-SLDGKYLAMGSKDGDICVVDVKKMEINH  280 (301)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d~~i~i~~~~~~~~~~  280 (301)
                      .|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++.++.++.+
T Consensus       238 ~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          238 GVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLEH  291 (296)
T ss_dssp             EEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCCC
T ss_pred             eEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccccc
Confidence            89999987 666666766666 899999 5899999988875 46666776665543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=3e-17  Score=129.89  Aligned_cols=220  Identities=12%  Similarity=-0.014  Sum_probs=152.5

Q ss_pred             ccccCCcceEEEECCCCC-eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEE
Q 022184           59 FDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (301)
                      +..+.....+++|+|+++ .++++..++.|..|+..++ . ..+.       .+...+.+++++|+|+++++...++.|.
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~-------~~~~~~~~l~~~~dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEM-------HPSHHQNGHCLNKQGHLIACSHGLRRLE   93 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEE-------SSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEE-------CCCCCcceeeECCCCcEEEEecCCCeEE
Confidence            334556688999999998 6777778899999998766 2 1111       1345689999999999877776678999


Q ss_pred             EEeCCCcceecccccC----CccEEEEEecCCCcEEEEE----e-------------CCCcEEEEeCCCCceEEEEeecC
Q 022184          138 IMHWPSLRIILDEPKA----HKSVLDMDFSLDSEFLATT----S-------------TDGSARIWKTEDGVAWTFLTRNS  196 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~----~-------------~d~~i~i~d~~~~~~~~~~~~~~  196 (301)
                      +||..+++........    ...+..++++|+|+++++.    +             ..+.|..++.. ++. ..+... 
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~-  170 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD-  170 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC-
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC-
Confidence            9999777653222111    1246789999999988873    2             12456666654 443 333333 


Q ss_pred             CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc-CceE---eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNK---IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      ...+..++|+|+++.     +++...++.|.+||+. +++.   ...+......+..++++++|+++++.  ++.|.+|+
T Consensus       171 ~~~~~gi~~s~dg~~-----lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~  243 (296)
T 3e5z_A          171 RVKPNGLAFLPSGNL-----LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLT  243 (296)
T ss_dssp             CSSEEEEEECTTSCE-----EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred             CCCCccEEECCCCCE-----EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence            335789999999997     4666778899999986 4443   22222234556789999999866666  78899999


Q ss_pred             CCCceeeccccccccCccEEEEEE-ccCCC
Q 022184          273 VKKMEINHWSKRLHLGTSIALVEF-CPTQR  301 (301)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~v~~~~~-spdg~  301 (301)
                      .. ++.+..+ ..+ .. +++++| +|||+
T Consensus       244 ~~-g~~~~~~-~~~-~~-~~~~~f~~~d~~  269 (296)
T 3e5z_A          244 PD-GDELGRV-LTP-QT-TSNLCFGGPEGR  269 (296)
T ss_dssp             TT-SCEEEEE-ECS-SC-CCEEEEESTTSC
T ss_pred             CC-CCEEEEE-ECC-CC-ceeEEEECCCCC
Confidence            87 6655555 334 44 889999 57764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=5.6e-19  Score=145.39  Aligned_cols=221  Identities=10%  Similarity=-0.050  Sum_probs=144.5

Q ss_pred             CCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCC-eeEEEEeeCCCEEEEeecCCeEEE
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGGVDGHLRI  138 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~v  138 (301)
                      ...+..++|+|+|++|+.....   ..|.+|++.+++... +       ..+... ...+.|+|||+.|+.++.++.|++
T Consensus        35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l-------~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~  106 (396)
T 3c5m_A           35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-L-------TEGKGDNTFGGFISTDERAFFYVKNELNLMK  106 (396)
T ss_dssp             CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-C-------CCSSCBCTTTCEECTTSSEEEEEETTTEEEE
T ss_pred             ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-e-------ecCCCCccccceECCCCCEEEEEEcCCcEEE
Confidence            3447889999999998877543   367777877665311 1       111222 233789999999999999999999


Q ss_pred             EeCCCcceecccccCCccEEE-------------------EEecCCCcEEEEE-----eCCCcEEEEeCCCCceEEEEee
Q 022184          139 MHWPSLRIILDEPKAHKSVLD-------------------MDFSLDSEFLATT-----STDGSARIWKTEDGVAWTFLTR  194 (301)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~  194 (301)
                      ||+.+++.......+......                   +.|+|+++.++..     ..+..|.+||+.+++...... 
T Consensus       107 ~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-  185 (396)
T 3c5m_A          107 VDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-  185 (396)
T ss_dssp             EETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-
T ss_pred             EECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-
Confidence            999887654333322222222                   3567787766654     356689999999887655543 


Q ss_pred             cCCCCeeEEEEcc-CCCcceEEEEEEeCCc----ceEEEEEccCceEeeeeecc-CCCcEEEEEcCCCCEEEEeeCC---
Q 022184          195 NSDEKIELCRFSK-DGTKPFLFCTVQRGDK----ALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKD---  265 (301)
Q Consensus       195 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d---  265 (301)
                      + ...+..+.|+| ++..+++   ...+..    ..|.+||+..++........ ...+..++|+|||++|+.++.+   
T Consensus       186 ~-~~~~~~~~~sp~dg~~l~~---~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  261 (396)
T 3c5m_A          186 D-TAWLGHPIYRPFDDSTVGF---CHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQ  261 (396)
T ss_dssp             E-SSCEEEEEEETTEEEEEEE---EECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred             C-CcccccceECCCCCCEEEE---EecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCC
Confidence            2 34588999999 7775321   222222    57999998766533222211 2247788999999988877554   


Q ss_pred             --CcEEEEeCCCceeeccccccccCccEEEEEEcc-CCC
Q 022184          266 --GDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQR  301 (301)
Q Consensus       266 --~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~  301 (301)
                        +.|++||+.+++..... ..  .. .. +.|+| ||+
T Consensus       262 ~~~~l~~~d~~~g~~~~l~-~~--~~-~~-~~~s~~dg~  295 (396)
T 3c5m_A          262 TDRVIYKANPETLENEEVM-VM--PP-CS-HLMSNFDGS  295 (396)
T ss_dssp             CCEEEEEECTTTCCEEEEE-EC--CS-EE-EEEECSSSS
T ss_pred             ccceEEEEECCCCCeEEee-eC--CC-CC-CCccCCCCc
Confidence              44999999988755432 11  11 23 88999 885

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.78  E-value=2.2e-16  Score=123.15  Aligned_cols=202  Identities=9%  Similarity=0.015  Sum_probs=143.4

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      ...+.+++++++|+.+++.. ++.|.+|+..+..... .      .......+..++++++|+++++...++.|.+|+..
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  137 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-L------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG  137 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-C------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-e------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECC
Confidence            45688999999998655554 8889999976543211 1      11123567899999999877777778899999865


Q ss_pred             CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCC
Q 022184          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (301)
                      +.............+.+++++|+++++++...++.|.+||............. ...+..++++++|..     .++...
T Consensus       138 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~g~l-----~v~~~~  211 (270)
T 1rwi_B          138 SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD-ITAPWGIAVDEAGTV-----YVTEHN  211 (270)
T ss_dssp             CCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS-CCSEEEEEECTTCCE-----EEEETT
T ss_pred             CceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccC-CCCceEEEECCCCCE-----EEEECC
Confidence            54433222223346788999999997777777889999998776544322222 245889999999963     355566


Q ss_pred             cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~  278 (301)
                      ++.|.+||............+...+..++++|+|+++++...++.|++|++...+.
T Consensus       212 ~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          212 TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            78899999876543322222235689999999999888888899999999876554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.78  E-value=1.6e-17  Score=146.53  Aligned_cols=226  Identities=11%  Similarity=0.002  Sum_probs=149.0

Q ss_pred             cccCCcceEEEECCCCCeEEEEe-----cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           60 DESEGDPMTIAVNPSGDDFVCST-----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~-----~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      .+|...+..++|||||++||.+.     .+..|++||+.+++...      ...+.. .....++|+|||+.|+.++.+.
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------~~~~~~-~~~~~~~wspDg~~l~~~~~d~  189 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------VDVIEG-GKYATPKWTPDSKGFYYEWLPT  189 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------SCCBSC-CTTCCCEECTTSSEEEEEECCC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------CcccCc-ccccceEEecCCCEEEEEEecC
Confidence            35666799999999999998443     34689999999876520      001111 1126789999999999998876


Q ss_pred             e-------------EEEEeCCCcce----ecccccCCccEEEEEecCCCcEEEEEeCCC----cEEEEeCCCCceEEEEe
Q 022184          135 H-------------LRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAWTFLT  193 (301)
Q Consensus       135 ~-------------i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~  193 (301)
                      .             |++|++.+++.    +.....+...+..+.|+|||++|+..+.++    .|.+++..+++. ..+.
T Consensus       190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~  268 (695)
T 2bkl_A          190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV  268 (695)
T ss_dssp             CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE
T ss_pred             CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee
Confidence            5             99999987762    222223345788999999999988877665    677777665554 3444


Q ss_pred             ecCCCCeeEEEEccCCCcceEEEEEEe--CCcceEEEEEccCceE--eeeeecc--CCCcEEEEEcCCCCEEEEeeCCCc
Q 022184          194 RNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNK--IGHKRLL--RKPASVLSISLDGKYLAMGSKDGD  267 (301)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~~~--~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~  267 (301)
                      .+.. .+....+ ++|. +++   .+.  ..++.|.+||+.+++.  ...+..+  ...+..++|+ ++.++++...|+.
T Consensus       269 ~~~~-~~~~~~~-~~g~-l~~---~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~  341 (695)
T 2bkl_A          269 KGVG-AKYEVHA-WKDR-FYV---LTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT  341 (695)
T ss_dssp             ECSS-CCEEEEE-ETTE-EEE---EECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred             cCCC-ceEEEEe-cCCc-EEE---EECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            4433 3455555 6666 332   222  2468999999987642  1223322  3457788888 7778888888988


Q ss_pred             EEEEeCC-CceeeccccccccCccEEEEEEccCCC
Q 022184          268 ICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       268 i~i~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+||.+. +++....+.... ...+..++++|||+
T Consensus       342 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~  375 (695)
T 2bkl_A          342 SEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLD  375 (695)
T ss_dssp             EEEEEEETTCCEEEECCCSS-SSEECCCBSCTTCS
T ss_pred             EEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCC
Confidence            7777654 344333332222 45677788888763

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.78  E-value=1.1e-16  Score=141.69  Aligned_cols=250  Identities=11%  Similarity=-0.004  Sum_probs=162.1

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (301)
                      .+..++|+||   ++.+|.+...... ....|.+|+.  .+......     .+.  ...+..++|+|||+.|+.++.++
T Consensus       126 ~~~~~~~SPD---g~~la~~~~~~G~-~~~~i~v~d~--~tg~~~~~-----~~~--~~~~~~~~wspDg~~l~~~~~~~  192 (710)
T 2xdw_A          126 ALRGYAFSED---GEYFAYGLSASGS-DWVTIKFMKV--DGAKELPD-----VLE--RVKFSCMAWTHDGKGMFYNAYPQ  192 (710)
T ss_dssp             EEEEEEECTT---SSEEEEEEEETTC-SCEEEEEEET--TTTEEEEE-----EEE--EECSCCEEECTTSSEEEEEECCC
T ss_pred             EEEEEEECCC---CCEEEEEEcCCCC-ceEEEEEEEC--CCCCCCcc-----ccc--CcccceEEEEeCCCEEEEEEECC
Confidence            5788999988   6677765432111 1124555544  44333211     111  12267899999999999988776


Q ss_pred             c----------------EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-----CCeEEEEeCCC-
Q 022184           86 G----------------CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPS-  143 (301)
Q Consensus        86 ~----------------i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~v~d~~~-  143 (301)
                      .                |++|++.++.....+..   ....+...+..+.|+|||++|+..+.     +..|++||+.+ 
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~  269 (710)
T 2xdw_A          193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA---EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQE  269 (710)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE---CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGS
T ss_pred             ccccccccccccCCCCEEEEEECCCCcccceEEe---ccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccc
Confidence            5                99999977653222211   11113345788999999999988765     56899999976 


Q ss_pred             -----cc-eecccccCCccEEEEEecCCCcEEEEEeCC----CcEEEEeCCCCc--eEEEEeecCC-CCeeEEEEccCCC
Q 022184          144 -----LR-IILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGV--AWTFLTRNSD-EKIELCRFSKDGT  210 (301)
Q Consensus       144 -----~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~--~~~~~~~~~~-~~v~~~~~~~~~~  210 (301)
                           +. ....+..+...+.. .|+|+|+.|+..+..    ..|.+||+.++.  ....+..+.. ..+..++|++++.
T Consensus       270 ~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  348 (710)
T 2xdw_A          270 SNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF  348 (710)
T ss_dssp             SSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred             ccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence                 43 23445455555444 488899887776643    359999998764  2344443433 3578889986554


Q ss_pred             cceEEEEEEeCCcc--eEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee----CCCcEEEEeCCCce
Q 022184          211 KPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS----KDGDICVVDVKKME  277 (301)
Q Consensus       211 ~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~d~~i~i~~~~~~~  277 (301)
                      .     +++...++  .|.+||+.+++.+..+..+...+..+.++|+++.++...    ..+.|++||+.+++
T Consensus       349 l-----v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          349 L-----VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             E-----EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             E-----EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            3     34444454  577788867776666666667788899999987666442    34789999998776

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.77  E-value=1.4e-14  Score=114.37  Aligned_cols=262  Identities=6%  Similarity=-0.020  Sum_probs=171.0

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ..+.++++.++   +++.+...      ..+  .++.+++. ..+..     ..+..+...+.+++++++|..+++...+
T Consensus        15 ~~~~~i~~d~~---g~l~v~~~------~~~--~v~~~d~~-~~~~~-----~~~~~~~~~~~~i~~~~~g~l~v~~~~~   77 (299)
T 2z2n_A           15 TGPYGITVSDK---GKVWITQH------KAN--MISCINLD-GKITE-----YPLPTPDAKVMCLTISSDGEVWFTENAA   77 (299)
T ss_dssp             CCEEEEEECTT---SCEEEEET------TTT--EEEEECTT-CCEEE-----EECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CCccceEECCC---CCEEEEec------CCC--cEEEEcCC-CCeEE-----ecCCcccCceeeEEECCCCCEEEeCCCC
Confidence            45778888765   44444422      122  34445554 22211     1122345679999999999877776667


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecc-cccCCccEEEEEec
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS  163 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~  163 (301)
                      +.|..|+.+ ++. ....   ..  .....+..++++++++++++...++.|..||. +++.... .......+..+++.
T Consensus        78 ~~i~~~~~~-g~~-~~~~---~~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~  149 (299)
T 2z2n_A           78 NKIGRITKK-GII-KEYT---LP--NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG  149 (299)
T ss_dssp             TEEEEECTT-SCE-EEEE---CS--STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             CeEEEECCC-CcE-EEEe---CC--CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc
Confidence            889999875 221 1111   11  12356889999999988777777889999998 5443321 22233568999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee-eec
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL  242 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~  242 (301)
                      ++++.+++...++.|..||. +++............+..+++++++..     .++...++.|.+||. +++.... ...
T Consensus       150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~  222 (299)
T 2z2n_A          150 SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL-----WFVEIIGNKIGRITT-SGEITEFKIPT  222 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE-----EEEccCCceEEEECC-CCcEEEEECCC
Confidence            99988877777789999998 665543222222345889999999874     344555788999999 5554321 222


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ....+..++++++|+++++...++.|..||. +++........+ ...+.++++ ++|+
T Consensus       223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-~~~~~~i~~-~~g~  278 (299)
T 2z2n_A          223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIK-SAEPHGICF-DGET  278 (299)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSS-SCCEEEEEE-CSSC
T ss_pred             CCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCC-CCccceEEe-cCCC
Confidence            3467889999999986666657789999998 454333212233 467889998 8774

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.76  E-value=4.6e-16  Score=121.29  Aligned_cols=221  Identities=8%  Similarity=0.017  Sum_probs=150.9

Q ss_pred             cceEEEECCCCCeEE-EEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184           65 DPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~-~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~  143 (301)
                      .+.+++++++|+.++ +...++.|.+|+..+.....      . ...+...+.+++++++++++++.. ++.|.+||...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~------~-~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~   96 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV------L-PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS   96 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE------C-CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce------E-eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC
Confidence            688999999998666 43667889999875543211      0 112234578899999998666555 88999999876


Q ss_pred             cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc
Q 022184          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (301)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  223 (301)
                      .............+..++++|+|+++++...++.|.+|+..+......... ....+..++++++|+.     .++...+
T Consensus        97 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~l-----~v~~~~~  170 (270)
T 1rwi_B           97 NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGNV-----YVTDTDN  170 (270)
T ss_dssp             SCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC-SCCSCCCEEECTTCCE-----EEEEGGG
T ss_pred             ceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc-cCCCceeEEEeCCCCE-----EEEECCC
Confidence            543222112235789999999999888777788999998765543322211 2234788999999974     3455567


Q ss_pred             ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +.|.+||................+..++++++|.++++...++.|.+|+.......... ..+ ...+.+++++|||+
T Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-~~~-~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          171 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-FTG-LNTPLAVAVDSDRT  246 (270)
T ss_dssp             TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC-CCS-CSCEEEEEECTTCC
T ss_pred             CEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec-cCC-CCCceeEEECCCCC
Confidence            89999998876554332333356889999999977777777889999999765443322 222 35689999999985

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=1.9e-15  Score=121.22  Aligned_cols=217  Identities=11%  Similarity=-0.025  Sum_probs=152.1

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~  143 (301)
                      ..+..+.+. +++.+++...++.|.+||..+++....+        ........++++++++.+++...++.|.+||..+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t  114 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--------TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT  114 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--------ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--------CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            446778774 3445555566789999999887763333        1235678999999985444443789999999998


Q ss_pred             cceecccccCC-----ccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE
Q 022184          144 LRIILDEPKAH-----KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       144 ~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (301)
                      ++....+....     .....+++ .+++.+++.. .++.|.++|+++++....+...  .....++++|+|+.     .
T Consensus       115 ~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG~l-----~  186 (328)
T 3dsm_A          115 YEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYNKM-----W  186 (328)
T ss_dssp             TEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTSEE-----E
T ss_pred             CeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCCCE-----E
Confidence            88765544332     14556777 3444444443 4889999999999888877643  23678999999984     2


Q ss_pred             EEeCCc----------ceEEEEEccCceEeeeeecc-CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc-ccc
Q 022184          218 VQRGDK----------ALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS-KRL  285 (301)
Q Consensus       218 ~~~~~~----------~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~  285 (301)
                      ++...+          +.|.++|..+++....+... ......++++|+++.|+++..  .|.+||..+++..... ...
T Consensus       187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~  264 (328)
T 3dsm_A          187 TITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEF  264 (328)
T ss_dssp             EEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCC
T ss_pred             EEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecC
Confidence            333333          78999999998877665433 346899999999999988765  8999999988764321 111


Q ss_pred             ccCccEEEEEEccCC
Q 022184          286 HLGTSIALVEFCPTQ  300 (301)
Q Consensus       286 ~~~~~v~~~~~spdg  300 (301)
                      . ......++++|++
T Consensus       265 ~-~~~p~gi~vdp~~  278 (328)
T 3dsm_A          265 R-DTKYYGLTVNPNN  278 (328)
T ss_dssp             C-SSCEEEEEECTTT
T ss_pred             C-CCceEEEEEcCCC
Confidence            1 3568899999953

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.74  E-value=8.5e-15  Score=117.72  Aligned_cols=240  Identities=17%  Similarity=0.150  Sum_probs=151.8

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC-
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-   84 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-   84 (301)
                      .+.+++|.++   +++++++..      ++  .|+.+++.+..+..      ....+...+.+++++|+|+++++...+ 
T Consensus        46 ~~~~~~~~~~---g~l~~~~~~------~~--~i~~~d~~~~~~~~------~~~~~~~~~~~i~~~~dg~l~v~~~~~~  108 (333)
T 2dg1_A           46 QLEGLNFDRQ---GQLFLLDVF------EG--NIFKINPETKEIKR------PFVSHKANPAAIKIHKDGRLFVCYLGDF  108 (333)
T ss_dssp             CEEEEEECTT---SCEEEEETT------TC--EEEEECTTTCCEEE------EEECSSSSEEEEEECTTSCEEEEECTTS
T ss_pred             cccCcEECCC---CCEEEEECC------CC--EEEEEeCCCCcEEE------EeeCCCCCcceEEECCCCcEEEEeCCCC
Confidence            4578889865   456555442      23  45556655443311      112346779999999999877776665 


Q ss_pred             ---CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec------CCeEEEEeCCCcceecccccCCc
Q 022184           85 ---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHK  155 (301)
Q Consensus        85 ---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~  155 (301)
                         +.|.+||.+++.......     .......+..++++|+|+++++...      .+.|..+|..+++.. .+.....
T Consensus       109 ~~~~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~  182 (333)
T 2dg1_A          109 KSTGGIFAATENGDNLQDIIE-----DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNIS  182 (333)
T ss_dssp             SSCCEEEEECTTSCSCEEEEC-----SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEES
T ss_pred             CCCceEEEEeCCCCEEEEEEc-----cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCC
Confidence               579999987665421111     0113357899999999987776553      356777776554432 2222334


Q ss_pred             cEEEEEecCCCcEEE-EEeCCCcEEEEeCCC-CceEEEE-----ee-cCCCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184          156 SVLDMDFSLDSEFLA-TTSTDGSARIWKTED-GVAWTFL-----TR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~-~~~~~~~-----~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (301)
                      .+..++|+|+++.|+ +.+.++.|.+||+++ +.....+     .. .....+..++++++|+.     .++...++.|.
T Consensus       183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l-----~v~~~~~~~v~  257 (333)
T 2dg1_A          183 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL-----YVAMYGQGRVL  257 (333)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE-----EEEEETTTEEE
T ss_pred             cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCE-----EEEEcCCCEEE
Confidence            578899999998554 445678999999964 3322211     11 11135788999999984     34444568899


Q ss_pred             EEEccCceEeeeeeccCC------CcEEEEEcCCCCEEEEeeCCC------cEEEEeCC
Q 022184          228 VYDISTWNKIGHKRLLRK------PASVLSISLDGKYLAMGSKDG------DICVVDVK  274 (301)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~d~------~i~i~~~~  274 (301)
                      +||.. ++.+..+.....      .+.+++|+||++.|++++.++      .|..+++.
T Consensus       258 ~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          258 VFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             EECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             EECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence            99984 555555544332      578999999987777666553      45555554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.74  E-value=3.5e-16  Score=138.07  Aligned_cols=251  Identities=12%  Similarity=0.000  Sum_probs=156.0

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ..+..++|+||   ++.+|.+..... +.+..|++|+.+...  ...    ...+..  .....++|+|||+.|+.++.|
T Consensus       121 ~~~~~~~~SPD---G~~la~~~~~~G-~~~~~i~v~dl~tg~--~~~----~~~~~~--~~~~~~~wspDg~~l~~~~~d  188 (695)
T 2bkl_A          121 VSLGTWAVSWD---GKKVAFAQKPNA-ADEAVLHVIDVDSGE--WSK----VDVIEG--GKYATPKWTPDSKGFYYEWLP  188 (695)
T ss_dssp             EEEEEEEECTT---SSEEEEEEEETT-CSCCEEEEEETTTCC--BCS----SCCBSC--CTTCCCEECTTSSEEEEEECC
T ss_pred             EEEEEEEECCC---CCEEEEEECCCC-CceEEEEEEECCCCC--CcC----CcccCc--ccccceEEecCCCEEEEEEec
Confidence            36888999988   667775433211 134556666665432  210    001111  112689999999999999887


Q ss_pred             Cc-------------EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC----eEEEEeCCCccee
Q 022184           85 GG-------------CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSLRII  147 (301)
Q Consensus        85 ~~-------------i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~v~d~~~~~~~  147 (301)
                      ..             |++|++.++.....+..   ....+...+..+.|||||++|++.+.++    .|++++..+++. 
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-  264 (695)
T 2bkl_A          189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH---ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-  264 (695)
T ss_dssp             CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE---CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-
T ss_pred             CCCCCccccCCCCCEEEEEECCCCchhceEEE---ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-
Confidence            66             99999987654222211   1112335678999999999998887666    777777655543 


Q ss_pred             cccccCCccEEEEEecCCCcEEEEEe---CCCcEEEEeCCCCce--EEEEeecC-CCCeeEEEEccCCCcceEEEEEEeC
Q 022184          148 LDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVA--WTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       148 ~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                      ..+..+...+....+ +++++++...   .++.|.+||+.+++.  ...+..+. ...+..++|+ ++..     +++..
T Consensus       265 ~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l-----v~~~~  337 (695)
T 2bkl_A          265 RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL-----SLEYL  337 (695)
T ss_dssp             EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE-----EEEEE
T ss_pred             EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE-----EEEEE
Confidence            344445555566666 5666444433   257899999987653  23333333 4457888887 4432     45556


Q ss_pred             CcceEEEEEcc-CceEeeeeecc-CCCcEEEEEcCCCCEEEEee----CCCcEEEEeCCCcee
Q 022184          222 DKALLAVYDIS-TWNKIGHKRLL-RKPASVLSISLDGKYLAMGS----KDGDICVVDVKKMEI  278 (301)
Q Consensus       222 ~~~~i~~~d~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~----~d~~i~i~~~~~~~~  278 (301)
                      .++..++|.+. +++....+..+ ...+..++++|+++.++...    ..+.|++||+.+++.
T Consensus       338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            67766666544 34444444443 45677788999998777443    347899999988764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.74  E-value=6.7e-15  Score=125.69  Aligned_cols=223  Identities=11%  Similarity=0.066  Sum_probs=152.1

Q ss_pred             cceEEEECCCCCeEEEEecCCcEEEEEEc--CCccccccccccCCCCCCCCCeeEEEEe----eCCCEEEEeec-CCeEE
Q 022184           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFS----VDGSRFAAGGV-DGHLR  137 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~-dg~i~  137 (301)
                      .+..+.|+|||+++++++.|+.|.+||+.  +.+....+        ........++|+    |||+++++++. ++.+.
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i--------~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~  269 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI--------KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYV  269 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE--------ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE--------ecCCCCceeEEccccCCCCCEEEEEEccCCeEE
Confidence            56789999999999999999999999985  44332111        122346789999    69999887765 59999


Q ss_pred             EEeCCCcceecccccC-----------CccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEE
Q 022184          138 IMHWPSLRIILDEPKA-----------HKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  205 (301)
                      ++|..+.+.+..+...           ...+..+..++++. +++....+|.|.++|....+.+.............+.|
T Consensus       270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~  349 (567)
T 1qks_A          270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL  349 (567)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred             EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceE
Confidence            9999888876654321           12577888888766 45555567999999998765444333333445788999


Q ss_pred             ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec-cC--CCcEEEE-EcCCCCEE-EEee-CCCcEEEEeCCC----
Q 022184          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LR--KPASVLS-ISLDGKYL-AMGS-KDGDICVVDVKK----  275 (301)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~--~~v~~~~-~s~~~~~l-~~~~-~d~~i~i~~~~~----  275 (301)
                      +|+++++    +++...++.|.++|+.+++.+..+.. ..  .+-..+. ++|++..+ ++.. .++.|.++|..+    
T Consensus       350 ~pdgr~~----~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~  425 (567)
T 1qks_A          350 DGSHRYF----ITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP  425 (567)
T ss_dssp             CTTSCEE----EEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred             CCCCCEE----EEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence            9999973    34555678999999999987766554 22  1112233 58875444 4443 468999999987    


Q ss_pred             ---ceeeccccccccCccEEEEEEccCCC
Q 022184          276 ---MEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       276 ---~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                         .+.++.+.. . ...-.-+..+|||+
T Consensus       426 ~~~~kvv~~i~~-~-g~g~~~i~~~p~~~  452 (567)
T 1qks_A          426 DNAWKILDSFPA-L-GGGSLFIKTHPNSQ  452 (567)
T ss_dssp             TTBTSEEEEEEC-S-CSCCCCEECCTTCS
T ss_pred             cccCEEEEEEec-C-CCCCEEEEeCCCCC
Confidence               555555432 1 12223356777764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=2.4e-15  Score=120.68  Aligned_cols=218  Identities=5%  Similarity=-0.102  Sum_probs=147.8

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee--cCCeEEEEe
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMH  140 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~v~d  140 (301)
                      ...+..++++++++.+++...++.|.+||..+.+....+....  ..........+++ . +..++++.  .++.|.++|
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~--~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD  158 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPD--MDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKID  158 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTT--CCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEE
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCC--ccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEE
Confidence            4568899999988544444378999999998876533322111  0001113456677 4 44555554  488999999


Q ss_pred             CCCcceecccccCCccEEEEEecCCCcEEEEEeCC----------CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC
Q 022184          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD----------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (301)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (301)
                      +.+++.+..+... .....++++|+|++++++..+          +.|.++|..+++....+.......+..++|+|+++
T Consensus       159 ~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~  237 (328)
T 3dsm_A          159 TETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD  237 (328)
T ss_dssp             TTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC
T ss_pred             CCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC
Confidence            9998876665433 345688999999977776654          78999999999887777654334689999999999


Q ss_pred             cceEEEEEEeCCcceEEEEEccCceEeee--eeccCCCcEEEEEcCC-CCEEEEe----eCCCcEEEEeCCCceeecccc
Q 022184          211 KPFLFCTVQRGDKALLAVYDISTWNKIGH--KRLLRKPASVLSISLD-GKYLAMG----SKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~s~~-~~~l~~~----~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      .+     .....  .|.+||..+++....  +.........++++|+ ++++++.    ..++.|.+||.. ++.+..+.
T Consensus       238 ~l-----yv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          238 TL-----YWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EE-----EEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             EE-----EEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence            73     33332  899999988765321  1111356889999995 5555555    467899999998 88777664


Q ss_pred             ccccCccEEEEEE
Q 022184          284 RLHLGTSIALVEF  296 (301)
Q Consensus       284 ~~~~~~~v~~~~~  296 (301)
                      .+   .....++|
T Consensus       310 ~G---~~P~~~~~  319 (328)
T 3dsm_A          310 VG---IIPGAFCW  319 (328)
T ss_dssp             EE---ESEEEEEE
T ss_pred             ec---cCcceEEE
Confidence            32   34455555

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.73  E-value=1.4e-14  Score=114.45  Aligned_cols=226  Identities=9%  Similarity=0.062  Sum_probs=157.2

Q ss_pred             ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEE
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  138 (301)
                      +..+...+.+++++++|+.+++...++.|.+||.. +... ...   .  ......+.+++++++++++++...++.|..
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~---~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~   82 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYP---L--PTPDAKVMCLTISSDGEVWFTENAANKIGR   82 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEE---C--SSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-Eec---C--CcccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence            34455679999999999877766567889999977 4321 111   0  012357889999999988777776889999


Q ss_pred             EeCCCcce-ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE
Q 022184          139 MHWPSLRI-ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       139 ~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (301)
                      ||.. ++. ..........+..+++.|+++++++...++.|..||. +++............+..+++.+++..     .
T Consensus        83 ~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~  155 (299)
T 2z2n_A           83 ITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNAL-----W  155 (299)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCE-----E
T ss_pred             ECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCE-----E
Confidence            9976 332 1122223457899999999988887777889999998 555443322223345889999999974     3


Q ss_pred             EEeCCcceEEEEEccCceEeee-eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEE
Q 022184          218 VQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~  296 (301)
                      ++...++.|..||. +++.... .......+..++++++|+++++...++.|.+|+. +++........+ ...+.++++
T Consensus       156 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~  232 (299)
T 2z2n_A          156 FTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTP-NARPHAITA  232 (299)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEE
T ss_pred             EEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCC-CCCceeEEE
Confidence            44556788999998 5554332 2223456789999999997777666789999999 665443222223 467889999


Q ss_pred             ccCCC
Q 022184          297 CPTQR  301 (301)
Q Consensus       297 spdg~  301 (301)
                      +++|+
T Consensus       233 ~~~g~  237 (299)
T 2z2n_A          233 GAGID  237 (299)
T ss_dssp             CSTTC
T ss_pred             CCCCC
Confidence            99875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.73  E-value=2.7e-15  Score=117.14  Aligned_cols=211  Identities=7%  Similarity=-0.069  Sum_probs=158.3

Q ss_pred             CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC
Q 022184           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (301)
Q Consensus        74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  153 (301)
                      .++.|++++.++.|++||.++++...++...      ....+.++.++|+|++++  +.++.|+.||. +++.+.++...
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~------~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~   74 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE------KGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP   74 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECC------TTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC------ccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC
Confidence            3578889999999999999888775544321      113578899999999888  34788999998 78887777654


Q ss_pred             C-ccEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCceEEEEeecCC-----CCeeEEEEccCCCcceEEEEEEeCCcceE
Q 022184          154 H-KSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (301)
Q Consensus       154 ~-~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~i  226 (301)
                      . ..+.++.+.|+|+++++.+. ++.+..+|. +++.+..+.....     .....+++.++|+.     +++...++.|
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~-----lv~~~~~~~v  148 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY-----LVPLFATSEV  148 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE-----EEEETTTTEE
T ss_pred             CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE-----EEEecCCCEE
Confidence            3 47889999999999999887 778888885 7777776653211     13556788999997     6777889999


Q ss_pred             EEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc----cCccEEEEEEccCCC
Q 022184          227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH----LGTSIALVEFCPTQR  301 (301)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~----~~~~v~~~~~spdg~  301 (301)
                      ..||.+ ++.+..+... ..+..+...++|+.++++..+++|..+|..+++.+..+....    ....+..++..++|+
T Consensus       149 ~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~  225 (276)
T 3no2_A          149 REIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG  225 (276)
T ss_dssp             EEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred             EEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence            999998 8887766654 345677889999999999888899999999898876653211    012366666666653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.72  E-value=1.1e-13  Score=109.25  Aligned_cols=263  Identities=9%  Similarity=0.002  Sum_probs=168.4

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ..+.++++.++   +++.+...      ..+  .|..+++. ..+..     ..+..+...+.+++++++++..++...+
T Consensus        20 ~~p~~i~~d~~---g~l~v~~~------~~~--~v~~~~~~-~~~~~-----~~~~~~~~~~~~i~~~~~g~l~v~~~~~   82 (300)
T 2qc5_A           20 SGPYGITSSED---GKVWFTQH------KAN--KISSLDQS-GRIKE-----FEVPTPDAKVMCLIVSSLGDIWFTENGA   82 (300)
T ss_dssp             CCEEEEEECTT---SCEEEEET------TTT--EEEEECTT-SCEEE-----EECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CCcceeeECCC---CCEEEEcC------CCC--eEEEECCC-CceEE-----EECCCCCCcceeEEECCCCCEEEEecCC
Confidence            45667777755   44444422      123  34445554 22211     1122334678999999999877776667


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec-ccccCCccEEEEEec
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-DEPKAHKSVLDMDFS  163 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~  163 (301)
                      +.|..+|.. ++.. ...   ..  .....+..+++.++++++++...++.|..+|.. ++... ........+..+++.
T Consensus        83 ~~v~~~d~~-g~~~-~~~---~~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d  154 (300)
T 2qc5_A           83 NKIGKLSKK-GGFT-EYP---LP--QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG  154 (300)
T ss_dssp             TEEEEECTT-SCEE-EEE---CS--STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred             CeEEEECCC-CCeE-Eec---CC--CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC
Confidence            889999876 3321 111   11  122568899999999887777668899999987 54432 222234578999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee-eec
Q 022184          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL  242 (301)
Q Consensus       164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~  242 (301)
                      ++++++++...++.|..+|. +++............+..+++.+++..     .++....+.|.+||. +++.... ...
T Consensus       155 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~  227 (300)
T 2qc5_A          155 SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGAL-----WFVEIMGNKIGRITT-TGEISEYDIPT  227 (300)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCE-----EEEccCCCEEEEEcC-CCcEEEEECCC
Confidence            99997777666788999998 555443222122345889999999874     344455678999998 4443322 222


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ....+.+++++++|++.++...++.|..|+. +++......... ...+.++++.++|+
T Consensus       228 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~  284 (300)
T 2qc5_A          228 PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE-NAEPHGITFGKDGS  284 (300)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST-TCCCCCEEECTTSC
T ss_pred             CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc-CCccceeEeCCCCC
Confidence            3456889999999986666666789999998 444332211222 35678888888874

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.72  E-value=7e-16  Score=137.07  Aligned_cols=226  Identities=12%  Similarity=0.039  Sum_probs=144.9

Q ss_pred             ccCCcceEEEECCCCCeEEEEecC-----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d-----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      +|...+..++|||||++|+.++.+     ..|++||+.+++......        +...+..++|+|| +.|+.+..++.
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--------~~~~~~~~~wspD-~~l~~~~~~~~  230 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--------KWVKFSGLAWLGN-DALLYSRFAEP  230 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--------EEEESCCCEESTT-SEEEEEECCCC
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--------CCceeccEEEECC-CEEEEEEecCc
Confidence            344578899999999999877654     359999998876522110        1112356899999 99988876543


Q ss_pred             --------------EEEEeCCCcce----ecccccCCccEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCC--ceEE
Q 022184          136 --------------LRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDG--VAWT  190 (301)
Q Consensus       136 --------------i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~--~~~~  190 (301)
                                    |++|++.++..    +.....+...+..+.|+|||++|+..+.++     .|++||+.++  +...
T Consensus       231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  310 (741)
T 1yr2_A          231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT  310 (741)
T ss_dssp             --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred             ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence                          88999876652    222222223588999999999888877544     7999999877  3134


Q ss_pred             EEeecCCCCeeEEEEccCCCcceEEEEEE-eCCcceEEEEEccCc--eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCc
Q 022184          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQ-RGDKALLAVYDISTW--NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD  267 (301)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  267 (301)
                      .+..+... .... ++|+|+.+++  ... ...++.|.+||+.++  +....+..+...+..++|+ ++.++++...|+.
T Consensus       311 ~l~~~~~~-~~~~-~~~dg~~l~~--~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~  385 (741)
T 1yr2_A          311 ALIPDLKA-QWDF-VDGVGDQLWF--VSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK  385 (741)
T ss_dssp             EEECSSSS-CEEE-EEEETTEEEE--EECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred             EecCCCCc-eEEE-EeccCCEEEE--EECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            45444333 3333 3588887332  111 123567999999874  3333333344456677887 5677888888887


Q ss_pred             EEEEeCC-CceeeccccccccCccEEEEEEccCCC
Q 022184          268 ICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       268 i~i~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+||.+. +++....+...+ ...+..++++|||+
T Consensus       386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~  419 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDR  419 (741)
T ss_dssp             EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCS
T ss_pred             EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCC
Confidence            6666543 344444332223 56789999999874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=5.6e-16  Score=125.32  Aligned_cols=229  Identities=10%  Similarity=-0.029  Sum_probs=143.4

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC-
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-   84 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-   84 (301)
                      .+.+.+|+||   ++.++......   .++..+||.++..+.....       +..+.. +..++|+|+|+.|+.++.+ 
T Consensus        60 ~~~~~~~SpD---g~~la~~~~~~---~~~~~~l~~~~~~~g~~~~-------l~~~~~-~~~~~wspdg~~l~~~~~~~  125 (347)
T 2gop_A           60 NATMPRISPD---GKKIAFMRANE---EKKVSEIWVADLETLSSKK-------ILEAKN-IRSLEWNEDSRKLLIVGFKR  125 (347)
T ss_dssp             SCEEEEECTT---SSEEEEEEEET---TTTEEEEEEEETTTTEEEE-------EEEESE-EEEEEECTTSSEEEEEEECC
T ss_pred             cCCCeEECCC---CCEEEEEEecc---CCCcceEEEEECCCCceEE-------EEcCCC-ccceeECCCCCEEEEEEccC
Confidence            3567899988   55666543211   1134467777765543211       222233 8999999999999887642 


Q ss_pred             --------------------------CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC----
Q 022184           85 --------------------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----  134 (301)
Q Consensus        85 --------------------------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----  134 (301)
                                                ..|++|++.+++....+..        . .+..+.|+||| +++++..+.    
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--------~-~~~~~~~spdg-~~~~~~~~~~~~~  195 (347)
T 2gop_A          126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--------P-RFSSGIWHRDK-IVVNVPHREIIPQ  195 (347)
T ss_dssp             CC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--------E-TTCEEEEETTE-EEEEEECCCSSCC
T ss_pred             CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--------C-CcccccCCCCe-EEEEEeccccccc
Confidence                                      4688888876653111111        1 56789999999 777775442    


Q ss_pred             ---eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC--------CcEEEEeCCCCceEEEEeecCCCCeeE-
Q 022184          135 ---HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIEL-  202 (301)
Q Consensus       135 ---~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~v~~-  202 (301)
                         ...+|.+++++. ..+..+ ..+..+  +|||++|+..+.+        ..|.+||  +++. ..+...+...+.. 
T Consensus       196 ~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~  268 (347)
T 2gop_A          196 YFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQA  268 (347)
T ss_dssp             SSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEE
T ss_pred             ccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCc
Confidence               344444444443 333333 445444  9999998887754        3677787  4543 3333333455775 


Q ss_pred             EEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcE-EEEeCCCce
Q 022184          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI-CVVDVKKME  277 (301)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i-~i~~~~~~~  277 (301)
                      +.|+ ++ .     ++++..++.+++| +.+++.. .+..+...+.+++|+|  .++++++.++.. .+|.+. ++
T Consensus       269 ~~~s-dg-~-----~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          269 KIKD-GK-V-----YFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             EEET-TE-E-----EEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             cEEc-Cc-E-----EEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence            8999 77 4     4666778889999 8755543 3344467789999999  677777766654 666665 54

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.71  E-value=1.5e-14  Score=112.86  Aligned_cols=232  Identities=12%  Similarity=0.106  Sum_probs=159.8

Q ss_pred             ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccC-CcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc
Q 022184           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT   97 (301)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~   97 (301)
                      .++++.+.      .++.+.+|  +..+.+..      ..+..+. ..+.++.++|+|+.++  +.++.|+.||. +++.
T Consensus         5 ~~~lv~~~------~~~~v~~~--d~~tG~~~------w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~   67 (276)
T 3no2_A            5 QHLLVGGS------GWNKIAII--NKDTKEIV------WEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE   67 (276)
T ss_dssp             CEEEEECT------TCSEEEEE--ETTTTEEE------EEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE
T ss_pred             CcEEEeeC------CCCEEEEE--ECCCCeEE------EEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE
Confidence            35666655      34445555  44333331      1233333 4688999999999888  35677999998 5554


Q ss_pred             ccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcceecccc------cCCccEEEEEecCCCcEEE
Q 022184           98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEP------KAHKSVLDMDFSLDSEFLA  170 (301)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~  170 (301)
                      ..++..      .....+.++.+.|+|+++++.+. ++.+..+|. +++.+.++.      .++.....+++.++|++++
T Consensus        68 ~W~~~~------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv  140 (276)
T 3no2_A           68 LWNIAA------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV  140 (276)
T ss_dssp             EEEEEC------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE
T ss_pred             EEEEcC------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEE
Confidence            333321      11245788899999999998887 778888885 566554432      1223455677899999999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC------
Q 022184          171 TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------  244 (301)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------  244 (301)
                      +...++.|..||.+ ++.+..+...  ..+..+...++|+.     ++++..++.|..+|..+++.+-.+....      
T Consensus       141 ~~~~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~-----~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l  212 (276)
T 3no2_A          141 PLFATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDC-----LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQL  212 (276)
T ss_dssp             EETTTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCE-----EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCC
T ss_pred             EecCCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCE-----EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccc
Confidence            99999999999998 9988888754  24667888999986     5666777789999999998876665332      


Q ss_pred             CCcEEEEEcCCCCEEEEeeCC--------CcEEEEeC-CCceeeccc
Q 022184          245 KPASVLSISLDGKYLAMGSKD--------GDICVVDV-KKMEINHWS  282 (301)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~~d--------~~i~i~~~-~~~~~~~~~  282 (301)
                      ..+..++..++|+.+++....        +..+++++ .+++.+-.+
T Consensus       213 ~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~  259 (276)
T 3no2_A          213 FFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL  259 (276)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred             cccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence            226788889999988887421        23456666 466666554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.71  E-value=1.3e-14  Score=114.82  Aligned_cols=222  Identities=9%  Similarity=0.014  Sum_probs=147.6

Q ss_pred             cCCcceEEEECCCCCeE-EEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEe
Q 022184           62 SEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l-~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d  140 (301)
                      +..-..+..|+|++..| ++...++.|+.||..++....         ......+.+++++++|++++ +. ++.|.+||
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------~~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d   79 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------VTMDAPVSSVALRQSGGYVA-TI-GTKFCALN   79 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------EECSSCEEEEEEBTTSSEEE-EE-TTEEEEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------EeCCCceEEEEECCCCCEEE-EE-CCeEEEEE
Confidence            34456689999965544 455567899999987664311         11235789999999999544 44 56799999


Q ss_pred             CCCcceeccccc----CCccEEEEEecCCCcEEEEEeCC---------CcEEEEeCCCCceEEEEeecCCCCeeEEEEcc
Q 022184          141 WPSLRIILDEPK----AHKSVLDMDFSLDSEFLATTSTD---------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (301)
Q Consensus       141 ~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  207 (301)
                      .++++.......    ....+.+++++|+|+++++...+         ..-.+|.+........+.... .....++|+|
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~-~~pngi~~sp  158 (297)
T 3g4e_A           80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV-DISNGLDWSL  158 (297)
T ss_dssp             TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE-SBEEEEEECT
T ss_pred             CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc-ccccceEEcC
Confidence            887664322111    12358899999999976654322         234555554322222222222 2468999999


Q ss_pred             CCCcceEEEEEEeCCcceEEEEEc--cCceE-----eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeec
Q 022184          208 DGTKPFLFCTVQRGDKALLAVYDI--STWNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (301)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~i~~~d~--~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~  280 (301)
                      +++.+    .++...++.|.+||+  .++..     ...+......+..++++++|++.++....+.|..||..+++.+.
T Consensus       159 dg~~l----yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          159 DHKIF----YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             TSCEE----EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred             CCCEE----EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence            99863    245566789999987  44432     11222233567889999999888777777889999999888877


Q ss_pred             cccccccCccEEEEEEc-cCCC
Q 022184          281 WSKRLHLGTSIALVEFC-PTQR  301 (301)
Q Consensus       281 ~~~~~~~~~~v~~~~~s-pdg~  301 (301)
                      .+. .+ ...+++++|. ||++
T Consensus       235 ~i~-~p-~~~~t~~~f~g~d~~  254 (297)
T 3g4e_A          235 TVK-LP-VDKTTSCCFGGKNYS  254 (297)
T ss_dssp             EEE-CS-SSBEEEEEEESGGGC
T ss_pred             EEE-CC-CCCceEEEEeCCCCC
Confidence            663 34 4679999998 8764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.70  E-value=1.4e-14  Score=115.36  Aligned_cols=225  Identities=14%  Similarity=0.055  Sum_probs=150.4

Q ss_pred             CCcceEEEECCCCCeEEE-------EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-CCEEEEeecCC
Q 022184           63 EGDPMTIAVNPSGDDFVC-------STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDG  134 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~-------~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg  134 (301)
                      -..+.+++|+++++.+++       ...++.|.+|+..+++......   .....+...+.+++++++ ++++++ +..+
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~   92 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---PEVNGYGGIPAGCQCDRDANQLFVA-DMRL   92 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC---CEETTEECCEEEEEECSSSSEEEEE-ETTT
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe---cccCCCCCCCceEEEecCCCcEEEE-ECCC
Confidence            445789999999987777       4677889999976665421110   000012356889999999 664444 4445


Q ss_pred             eEEEEeCCCcceecc-ccc----CCccEEEEEecCCCcEEEEEeCC---------------CcEEEEeCCCCceEEEEee
Q 022184          135 HLRIMHWPSLRIILD-EPK----AHKSVLDMDFSLDSEFLATTSTD---------------GSARIWKTEDGVAWTFLTR  194 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d---------------~~i~i~d~~~~~~~~~~~~  194 (301)
                      .|.+||.. ++.... ...    ....+.+++++|+|+++++...+               +.|..||.. ++...... 
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence            79999987 654322 111    11358899999999887776655               567777765 55433322 


Q ss_pred             cCCCCeeEEEEc----cCCCcceEEEEEEeCCcceEEEEEcc-CceE-----eeeeeccC-CCcEEEEEcCCCCEEEEee
Q 022184          195 NSDEKIELCRFS----KDGTKPFLFCTVQRGDKALLAVYDIS-TWNK-----IGHKRLLR-KPASVLSISLDGKYLAMGS  263 (301)
Q Consensus       195 ~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~-----~~~~~~~~-~~v~~~~~s~~~~~l~~~~  263 (301)
                      .. .....++|+    |+++.+    .++...++.|.+||.. +++.     ...+..+. ..+..++++++|+++++..
T Consensus       170 ~~-~~~~~i~~~~~~d~dg~~l----~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~  244 (314)
T 1pjx_A          170 AF-QFPNGIAVRHMNDGRPYQL----IVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EE-SSEEEEEEEECTTSCEEEE----EEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             CC-CCcceEEEecccCCCCCEE----EEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence            22 236889999    998752    2444567899999986 3432     12222222 4578899999999888877


Q ss_pred             CCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          264 KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       264 ~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .++.|.+||..+++....+ ..+ ...+.+++|+|||+
T Consensus       245 ~~~~i~~~d~~~g~~~~~~-~~~-~~~~~~i~~~~dg~  280 (314)
T 1pjx_A          245 GSSHIEVFGPDGGQPKMRI-RCP-FEKPSNLHFKPQTK  280 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEE-ECS-SSCEEEEEECTTSS
T ss_pred             CCCEEEEEcCCCCcEeEEE-eCC-CCCceeEEECCCCC
Confidence            8889999999877665544 334 56799999999985

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.69  E-value=5.7e-15  Score=119.98  Aligned_cols=235  Identities=9%  Similarity=-0.022  Sum_probs=141.2

Q ss_pred             EEeeeecCCCccEEEecCCcc----ccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-
Q 022184            9 CGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-   83 (301)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-   83 (301)
                      .++|+|+   ++.+.++....    ....++.+.+|+..  .............-..+...+..++++|+|++|+++.. 
T Consensus        54 ~i~~spd---g~~lyv~~~~~~~~~~g~~~~~v~v~d~~--t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~  128 (361)
T 2oiz_A           54 HVQVSND---GKKIYTMTTYHERITRGKRSDVVEVWDAD--KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS  128 (361)
T ss_dssp             EEEECTT---SSEEEEEEEEETTSSSSCEEEEEEEEETT--TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES
T ss_pred             ceEECCC---CCEEEEEEecccccccCCCCCEEEEEECc--CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC
Confidence            7889977   45555533100    00124566777543  22221110000000012356788999999999998864 


Q ss_pred             -CCcEEEEEEcCCccccc-ccccc------CCC-------CCCCCCeeE---------------------------EEEe
Q 022184           84 -NGGCKLFEVYGGATDIN-LLAKK------MPP-------LQDAGPQKC---------------------------LSFS  121 (301)
Q Consensus        84 -d~~i~~w~~~~~~~~~~-~~~~~------~~~-------~~~~~~v~~---------------------------~~~s  121 (301)
                       +++|.+||+.+++.... +....      ...       ....+.+..                           +.++
T Consensus       129 ~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  208 (361)
T 2oiz_A          129 PATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPA  208 (361)
T ss_dssp             SSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEec
Confidence             57899999987765333 21100      000       000011111                           1223


Q ss_pred             eCCCEEEEeecCCeEEEEeCCCccee--cccc--c----C----CccEEEEEecCCCcEEEEEeC-----------CCcE
Q 022184          122 VDGSRFAAGGVDGHLRIMHWPSLRII--LDEP--K----A----HKSVLDMDFSLDSEFLATTST-----------DGSA  178 (301)
Q Consensus       122 ~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~--~----~----~~~i~~~~~~~~~~~l~~~~~-----------d~~i  178 (301)
                      +++..++..+.++.+.++|+......  ..+.  .    .    ......++++|+++.++++..           .+.|
T Consensus       209 ~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v  288 (361)
T 2oiz_A          209 LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEI  288 (361)
T ss_dssp             ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEE
T ss_pred             ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceE
Confidence            44445555556677888887543311  0000  0    0    011123789999887776543           3479


Q ss_pred             EEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc--eEeeeeeccCCCcEEEEEcCCC
Q 022184          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NKIGHKRLLRKPASVLSISLDG  256 (301)
Q Consensus       179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~s~~~  256 (301)
                      .+||+.+++.+..+..+.   +..++|+|+|++     +++++. +.|.+||..++  +.+..+.........++++|+|
T Consensus       289 ~viD~~t~~~v~~i~~~~---p~~ia~spdg~~-----l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          289 WVMDTKTKQRVARIPGRD---ALSMTIDQQRNL-----MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             EEEETTTTEEEEEEECTT---CCEEEEETTTTE-----EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred             EEEECCCCcEEEEEecCC---eeEEEECCCCCE-----EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence            999999999999887654   899999999997     344455 89999999999  8887776667778999999998


Q ss_pred             C
Q 022184          257 K  257 (301)
Q Consensus       257 ~  257 (301)
                      +
T Consensus       360 ~  360 (361)
T 2oiz_A          360 G  360 (361)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=2.3e-14  Score=122.38  Aligned_cols=199  Identities=11%  Similarity=0.056  Sum_probs=147.5

Q ss_pred             CCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC--Ccceeccc
Q 022184           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP--SLRIILDE  150 (301)
Q Consensus        73 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~--~~~~~~~~  150 (301)
                      |.+..+++...+++|.++|..+++....+.        ....+..+.|+|||+++++++.++.|.+||+.  +++.+.++
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~--------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i  236 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD--------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI  236 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEE--------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEe--------CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE
Confidence            344466677778999999998876633322        22356789999999999999999999999995  77776666


Q ss_pred             ccCCccEEEEEec----CCCcEEEEEe-CCCcEEEEeCCCCceEEEEeecC----------CCCeeEEEEccCCCcceEE
Q 022184          151 PKAHKSVLDMDFS----LDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNS----------DEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       151 ~~~~~~i~~~~~~----~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~  215 (301)
                      ... .....++|+    |||++++++. .++++.++|..+.+.+..+....          ...+..+..++++.. +  
T Consensus       237 ~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~-~--  312 (567)
T 1qks_A          237 KIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE-F--  312 (567)
T ss_dssp             ECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE-E--
T ss_pred             ecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE-E--
Confidence            543 346789999    6999887766 55899999999999888775321          225778889998765 2  


Q ss_pred             EEEEeCCcceEEEEEccCceEeeee-eccCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCceeeccccc
Q 022184          216 CTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKR  284 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~  284 (301)
                       ++.....+.|.++|....+.+... .........+.|+|+|++++++. .++.|.++|+.++++...+..
T Consensus       313 -vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          313 -IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             -EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             -EEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence             355578899999998765432211 12234567889999999987765 568999999999987765543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.67  E-value=1.2e-14  Score=129.15  Aligned_cols=249  Identities=11%  Similarity=-0.022  Sum_probs=151.0

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (301)
                      .+...+|+||   ++.+|.+....  +.+ ...||.++..+......     .+  +...+..++|+|| +.|+.++.++
T Consensus       164 ~~~~~~~SPD---G~~la~~~~~~--G~e-~~~i~v~dl~tg~~~~~-----~~--~~~~~~~~~wspD-~~l~~~~~~~  229 (741)
T 1yr2_A          164 ALDAWAASDD---GRLLAYSVQDG--GSD-WRTVKFVGVADGKPLAD-----EL--KWVKFSGLAWLGN-DALLYSRFAE  229 (741)
T ss_dssp             EEEEEEECTT---SSEEEEEEEET--TCS-EEEEEEEETTTCCEEEE-----EE--EEEESCCCEESTT-SEEEEEECCC
T ss_pred             EEEeEEECCC---CCEEEEEEcCC--CCc-eEEEEEEECCCCCCCCc-----cC--CCceeccEEEECC-CEEEEEEecC
Confidence            5778999988   66777654321  121 12344444444333211     11  1222467899999 9998887665


Q ss_pred             c--------------EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC-----eEEEEeCCCc--
Q 022184           86 G--------------CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSL--  144 (301)
Q Consensus        86 ~--------------i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~v~d~~~~--  144 (301)
                      .              |++|++.++.....+...   ...+...+..+.|||||++|+..+.++     .|++||+.++  
T Consensus       230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~---~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~  306 (741)
T 1yr2_A          230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA---TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI  306 (741)
T ss_dssp             C--------CCCCCEEEEEETTSCGGGCEEEEC---CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE
T ss_pred             cccccccccCCCCCEEEEEECCCCchhCEEEec---cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC
Confidence            4              888887665432222111   111223578999999999988877544     8999999776  


Q ss_pred             ceecccccCCccEEEEEecCCCcEEEEEeCC----CcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCCcceEEEEEE
Q 022184          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                      +....+..+........ +|+|+.|+..+.+    +.|.+||+.++ .....+..+....+..++|+  +..+    +++
T Consensus       307 ~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~l----v~~  379 (741)
T 1yr2_A          307 GPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRL----FAS  379 (741)
T ss_dssp             CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEE----EEE
T ss_pred             cccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEE----EEE
Confidence            31334444444444443 4889888877753    45999999875 23344444444456677776  3331    345


Q ss_pred             eCCcceEEEEEcc-CceEeeeeec-cCCCcEEEEEcCCCCEEEEe----eCCCcEEEEeCCCcee
Q 022184          220 RGDKALLAVYDIS-TWNKIGHKRL-LRKPASVLSISLDGKYLAMG----SKDGDICVVDVKKMEI  278 (301)
Q Consensus       220 ~~~~~~i~~~d~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~----~~d~~i~i~~~~~~~~  278 (301)
                      ...++..++|.+. +++....+.. ....+..+.++|+++.|+..    ...+.|++||+.+++.
T Consensus       380 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          380 YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            5556665555443 3444444443 24567889999998766633    2347899999988764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.67  E-value=3e-13  Score=110.05  Aligned_cols=220  Identities=7%  Similarity=-0.064  Sum_probs=144.4

Q ss_pred             EEEECCCCCeEEEEe----------cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec--CCe
Q 022184           68 TIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH  135 (301)
Q Consensus        68 ~~~~~~~~~~l~~~~----------~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~  135 (301)
                      .++++|||++++++.          .++.|.+||..+.+....+................+.|+|||++|+++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            999999999998875          36789999998765533322110000111123468999999999998874  478


Q ss_pred             EEEEeCCCcceecc-cccCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEEEee----cCCCC-eeEEEEccC
Q 022184          136 LRIMHWPSLRIILD-EPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTR----NSDEK-IELCRFSKD  208 (301)
Q Consensus       136 i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~-v~~~~~~~~  208 (301)
                      |.++| .+++.+.. +... .   ++.+.|++ +.+++.+.||.+.++|. +++.......    ....+ .....+.++
T Consensus       150 v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            99999 99887666 4322 2   24455655 35667778999999999 8776643221    11111 123456777


Q ss_pred             CCcceEEEEEEeCCcceEEEEEccCce--Eeeeeecc----------CCCcEEEEEcCCCCEEEEeeC----------CC
Q 022184          209 GTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLL----------RKPASVLSISLDGKYLAMGSK----------DG  266 (301)
Q Consensus       209 ~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~----------d~  266 (301)
                      +..+     +..+..+.+.+.|+.+..  .+..+...          ......+.++|+++.++++..          .+
T Consensus       224 ~~~~-----~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          224 SGRI-----VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             CCEE-----EEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            6652     222356789999987542  22222110          122344789999988888653          35


Q ss_pred             cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       267 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .|.++|+.+++.+..+..   .....+++|+|||+
T Consensus       299 ~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~  330 (373)
T 2mad_H          299 EVTSVTGLVGQTSSQISL---GHDVDAISVAQDGG  330 (373)
T ss_pred             eEEEEECCCCEEEEEEEC---CCCcCeEEECCCCC
Confidence            799999999999887743   34689999999986

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.66  E-value=5.7e-15  Score=119.41  Aligned_cols=177  Identities=10%  Similarity=-0.001  Sum_probs=132.6

Q ss_pred             cceEEEECCCCCeEEEEecCCcEEEEEEcCCcccc-----ccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI-----NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  139 (301)
                      .+..+++++....+++|+.++ +.+|+++..+...     ...  ......... |+.++|  |+++|+++ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~--~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLT--FKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC--CSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccccc--ceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence            689999999999999999887 7789986544100     000  001112345 999999  89999998 78999999


Q ss_pred             eCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEE
Q 022184          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                      |+++.........+..++.++.+.+.  .+++++.||.+.+||+.++.... +.    ..|++++|+|+| .      +.
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~----~~Vs~v~WSpkG-~------~v  177 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LA----QNVTSFDVTNSQ-L------AV  177 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EE----ESEEEEEECSSE-E------EE
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-cc----CCceEEEEcCCc-e------EE
Confidence            99876654445556667888777654  38889999999999999877643 21    259999999999 2      45


Q ss_pred             eCCcceEEEEEccCceE--eeee------e---ccCCCcEEEEEcCCCCEEEEe
Q 022184          220 RGDKALLAVYDISTWNK--IGHK------R---LLRKPASVLSISLDGKYLAMG  262 (301)
Q Consensus       220 ~~~~~~i~~~d~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~  262 (301)
                      +..||.+++|+....+.  ...+      .   .+...|.++.|.+++.++++=
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            67789999999887764  3334      2   256789999999999988873

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.65  E-value=7.4e-13  Score=104.52  Aligned_cols=224  Identities=9%  Similarity=0.060  Sum_probs=154.5

Q ss_pred             ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEe
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d  140 (301)
                      .....+.++++.++|+..++...++.|.+|+.. ++... ..   ..  .....+..++++++++++++...++.|..+|
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~---~~--~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FE---VP--TPDAKVMCLIVSSLGDIWFTENGANKIGKLS   89 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EE---CS--STTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EE---CC--CCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence            345678999999999877776677889999876 43211 11   11  1235688999999998777766678899999


Q ss_pred             CCCcceec-ccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEE
Q 022184          141 WPSLRIIL-DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       141 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                      .. ++... ........+..+++.++++++++...++.|..+|.. ++............+..+++.++++.     .++
T Consensus        90 ~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l-----~v~  162 (300)
T 2qc5_A           90 KK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL-----WFT  162 (300)
T ss_dssp             TT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE-----EEE
T ss_pred             CC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE-----EEE
Confidence            87 54421 222233578999999999988877778899999987 55443222222345889999999984     344


Q ss_pred             eCCcceEEEEEccCceEeee-eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          220 RGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       220 ~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      ...++.|..+|. +++.... .......+..++++++|++.++....+.|.+|+. +++........+ ...+.++++++
T Consensus       163 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~d~  239 (300)
T 2qc5_A          163 ENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTP-NARPHAITAGK  239 (300)
T ss_dssp             ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECS
T ss_pred             ecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCC-CCCceEEEECC
Confidence            555778999998 4444321 1123356889999999987777666778999998 554433322223 45688999999


Q ss_pred             CCC
Q 022184          299 TQR  301 (301)
Q Consensus       299 dg~  301 (301)
                      +|+
T Consensus       240 ~g~  242 (300)
T 2qc5_A          240 NSE  242 (300)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            874

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.65  E-value=2e-13  Score=108.70  Aligned_cols=204  Identities=10%  Similarity=0.033  Sum_probs=133.9

Q ss_pred             cCCcceEEEECCC-CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC-------
Q 022184           62 SEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------  133 (301)
Q Consensus        62 h~~~v~~~~~~~~-~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------  133 (301)
                      +...+.+++++++ ++.+++. ..+.|.+|+.+ ++.......  .........+.+++++++|+++++...+       
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~--~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  144 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKK--DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY  144 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSB--CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred             CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEec--cCCCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence            4567899999999 6645544 44468899887 443111011  0001122457899999999877776554       


Q ss_pred             --------CeEEEEeCCCcceecccccCCccEEEEEec----CCCcEEEEE-eCCCcEEEEeCC-CCceE--EEEee--c
Q 022184          134 --------GHLRIMHWPSLRIILDEPKAHKSVLDMDFS----LDSEFLATT-STDGSARIWKTE-DGVAW--TFLTR--N  195 (301)
Q Consensus       134 --------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~d~~i~i~d~~-~~~~~--~~~~~--~  195 (301)
                              +.|..++.. ++.. .+..+......++|+    |+++.++.+ ..++.|.+||++ +++..  ..+..  .
T Consensus       145 ~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  222 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             CBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             cccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence                    567777765 4432 222233456889999    999765544 567899999986 44321  11111  1


Q ss_pred             CC-CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEe-eCCCcEEEEeC
Q 022184          196 SD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDV  273 (301)
Q Consensus       196 ~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~  273 (301)
                      .. ..+..++++++|..     .++...++.|.+||.++++.+..+..+...+.+++|+|+++.|+++ ..++.|..|++
T Consensus       223 ~~~~~p~~i~~d~~G~l-----~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          223 THEGGADGMDFDEDNNL-----LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CSSCEEEEEEEBTTCCE-----EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCCCCCceEECCCCCE-----EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            11 35788999999974     3444457789999998776665566566788999999999955555 45678999998


Q ss_pred             CCc
Q 022184          274 KKM  276 (301)
Q Consensus       274 ~~~  276 (301)
                      ...
T Consensus       298 ~~~  300 (314)
T 1pjx_A          298 QRN  300 (314)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.65  E-value=3.8e-13  Score=107.78  Aligned_cols=215  Identities=13%  Similarity=0.014  Sum_probs=141.2

Q ss_pred             cceEEEECCCCCeE-EEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184           65 DPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (301)
Q Consensus        65 ~v~~~~~~~~~~~l-~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~  143 (301)
                      -...+.|+|++..+ ++...++.|..|+.++++...  .       .....+.+++|+|+|+++++. .+ .|.+||..+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--~-------~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~  118 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--H-------ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT  118 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--E-------ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--E-------ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC
Confidence            35678999976544 455567889999987664311  1       123468999999999876654 34 499999887


Q ss_pred             cceeccccc----CCccEEEEEecCCCcEEEEEeC------CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcce
Q 022184          144 LRIILDEPK----AHKSVLDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (301)
Q Consensus       144 ~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (301)
                      ++.......    ....+.+++++|+|+++++...      .+.|..++  +++.. .+... ......++|+|+++.++
T Consensus       119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~-~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD-ISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE-ESSEEEEEECTTSCEEE
T ss_pred             CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC-CcccCCeEEcCCCCEEE
Confidence            764321111    1236889999999997665542      23455555  44433 33222 12467899999998632


Q ss_pred             EEEEEEeCCcceEEEEEcc--Cc-eE-----eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccc
Q 022184          214 LFCTVQRGDKALLAVYDIS--TW-NK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (301)
Q Consensus       214 ~~~~~~~~~~~~i~~~d~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~  285 (301)
                          ++...++.|.+||+.  ++ +.     ...+......+..++++++|++.++...++.|.+|+. +++.+..+ ..
T Consensus       195 ----v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i-~~  268 (326)
T 2ghs_A          195 ----FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY-EV  268 (326)
T ss_dssp             ----EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE-EC
T ss_pred             ----EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE-EC
Confidence                445567899999986  55 31     1112122345678999999987777766788999998 56655544 33


Q ss_pred             ccCccEEEEEEc-cCCC
Q 022184          286 HLGTSIALVEFC-PTQR  301 (301)
Q Consensus       286 ~~~~~v~~~~~s-pdg~  301 (301)
                      + ...+++++|+ ||++
T Consensus       269 ~-~~~~~~~af~g~d~~  284 (326)
T 2ghs_A          269 P-GKQTTCPAFIGPDAS  284 (326)
T ss_dssp             S-CSBEEEEEEESTTSC
T ss_pred             C-CCCcEEEEEecCCCC
Confidence            4 4579999998 8764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.63  E-value=9.8e-14  Score=114.45  Aligned_cols=223  Identities=8%  Similarity=-0.074  Sum_probs=148.4

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC--eEEEEeC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHW  141 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~v~d~  141 (301)
                      ..+..++|+++++.+++...++.|++||.+++.......        ...... ++|+|+++.|+++..++  .|.+++.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~--------~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~  201 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP--------GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMK  201 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE--------TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec--------cCCCCc-eeEecCCCcEEEEecCCCceEEEEEc
Confidence            468899999999877776667899999988765422111        112234 89999999988888765  7888887


Q ss_pred             CCcceeccc----ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE---eecCCCC-ee-EEEEccCCCcc
Q 022184          142 PSLRIILDE----PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---TRNSDEK-IE-LCRFSKDGTKP  212 (301)
Q Consensus       142 ~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~-v~-~~~~~~~~~~~  212 (301)
                      ..+.....+    ......+.+++++|++..|+.+..++.|+.||..++......   ....... .. .++|+|++..+
T Consensus       202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            655432222    113356788999995555555777889999999877633220   1111111 13 99999975553


Q ss_pred             eEEEEEEeCCcceEEEEEccCceEeeeeecc---------------CCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCc
Q 022184          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLL---------------RKPASVLSISLDGKYLAMGS-KDGDICVVDVKKM  276 (301)
Q Consensus       213 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~  276 (301)
                          .++...++.|..||....  +..+...               -.....++++|+|+++++-. .+++|+.|++.++
T Consensus       282 ----yv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          282 ----YMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             ----EEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             ----EEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence                355667889999997653  2222222               13478899999999777777 7889999998888


Q ss_pred             eeecccccc-c-----------cCccEEEEEEccCCC
Q 022184          277 EINHWSKRL-H-----------LGTSIALVEFCPTQR  301 (301)
Q Consensus       277 ~~~~~~~~~-~-----------~~~~v~~~~~spdg~  301 (301)
                      +........ .           .-.....++++|+|+
T Consensus       356 ~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~  392 (409)
T 3hrp_A          356 YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG  392 (409)
T ss_dssp             EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE
T ss_pred             EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC
Confidence            754432110 0           013588999999873

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.63  E-value=1.7e-13  Score=110.46  Aligned_cols=244  Identities=12%  Similarity=0.006  Sum_probs=156.1

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe----------cCCcEEEEEEcCCccccccccccCC
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMP  107 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~~w~~~~~~~~~~~~~~~~~  107 (301)
                      .++.+|........      .+..-..+ . ++++|||++++++.          .++.|.+||..+.+....+....-.
T Consensus        60 ~V~ViD~~t~~v~~------~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~  131 (386)
T 3sjl_D           60 QQFVIDGEAGRVIG------MIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP  131 (386)
T ss_dssp             EEEEEETTTTEEEE------EEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred             EEEEEECCCCeEEE------EEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence            55556666554432      12222233 4 99999999888765          3678999999888764443221100


Q ss_pred             CCCCCCCeeEEEEeeCCCEEEEeec--CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 022184          108 PLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (301)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  185 (301)
                      ..........+.|+|||++++++..  ++.|.++|+.+++.+.++....  . ...+....+.+++.+.||++.+.++..
T Consensus       132 r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          132 RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCC
Confidence            1111234567999999999988864  6899999999998877764322  1 122333445677888899999999876


Q ss_pred             -CceEEEEeecC---CCCe-eEEEEc-cCCCcceEEEEEEeCCcceEEEEEccCce--Eeeeeec----------cCCCc
Q 022184          186 -GVAWTFLTRNS---DEKI-ELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRL----------LRKPA  247 (301)
Q Consensus       186 -~~~~~~~~~~~---~~~v-~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~----------~~~~v  247 (301)
                       ++.........   ..++ ....|. ++|+.      +..+.++.|.+.|+.+..  ....+..          .....
T Consensus       209 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~------~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~  282 (386)
T 3sjl_D          209 EGTPEITHTEVFHPEDEFLINHPAYSQKAGRL------VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW  282 (386)
T ss_dssp             SSCCEEEECCCCSCTTSCBCSCCEEETTTTEE------EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred             CCeEEEeecceeccccccccccceeEcCCCcE------EEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCc
Confidence             55433221111   1112 124564 67763      334557899999997653  2222210          11234


Q ss_pred             EEEEEcCCCCEEEEeeC----------CCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          248 SVLSISLDGKYLAMGSK----------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       248 ~~~~~s~~~~~l~~~~~----------d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..++++|+++.+++...          .+.|.++|+.+++.+..+..+   ..+++++++|||+
T Consensus       283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~  343 (386)
T 3sjl_D          283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEK  343 (386)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECSSSS
T ss_pred             ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---CCcceEEECCCCC
Confidence            45788999988888753          257999999999999887543   4788999999985

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.61  E-value=4.7e-14  Score=114.09  Aligned_cols=168  Identities=15%  Similarity=0.082  Sum_probs=126.0

Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc---------eec-ccccCCccEEEEEecCCCcEEEEEeCCCcEEEEe
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---------IIL-DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK  182 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~---------~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  182 (301)
                      .+++.+++++...++++|+.++ +.+|++....         ... ......+ |+.++|  |+++|+++ .++.|++||
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            3688999999999999999875 6669875443         111 1223445 999999  89999998 889999999


Q ss_pred             CCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEe
Q 022184          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (301)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  262 (301)
                      +++.........+. ..+..+.+.+.  .     ++....||.|.+||+.++....    +...|++++|||+|  ++.|
T Consensus       113 v~sl~~~~~~~~~~-~~v~~i~~~~p--~-----~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg  178 (388)
T 1xip_A          113 LEELSEFRTVTSFE-KPVFQLKNVNN--T-----LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVL  178 (388)
T ss_dssp             SSSTTCEEEEEECS-SCEEEEEECSS--E-----EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEE
T ss_pred             chhhhccCccceee-cceeeEEecCC--C-----EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEE
Confidence            98876655555443 45777776654  2     3566789999999999776543    34579999999999  7788


Q ss_pred             eCCCcEEEEeCCCcee--ecccc-----c---cccCccEEEEEEccCC
Q 022184          263 SKDGDICVVDVKKMEI--NHWSK-----R---LHLGTSIALVEFCPTQ  300 (301)
Q Consensus       263 ~~d~~i~i~~~~~~~~--~~~~~-----~---~~~~~~v~~~~~spdg  300 (301)
                      ..||++++|+...++.  ...+.     .   +| ...|.++.|.+++
T Consensus       179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~  225 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQ  225 (388)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSS
T ss_pred             EcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCC
Confidence            9999999999887774  33331     1   35 6789999999876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.60  E-value=8.7e-13  Score=104.25  Aligned_cols=229  Identities=10%  Similarity=0.038  Sum_probs=140.9

Q ss_pred             EEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcE
Q 022184            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (301)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i   87 (301)
                      -+..|.++.  ..++.+...      .+  +|+.+++.+.....       + .....+.+++++++|+++++ . +..|
T Consensus        16 Egp~w~~~~--~~l~~~d~~------~~--~i~~~d~~~~~~~~-------~-~~~~~~~~i~~~~dG~l~v~-~-~~~l   75 (297)
T 3g4e_A           16 ESPVWEEVS--NSLLFVDIP------AK--KVCRWDSFTKQVQR-------V-TMDAPVSSVALRQSGGYVAT-I-GTKF   75 (297)
T ss_dssp             EEEEEETTT--TEEEEEETT------TT--EEEEEETTTCCEEE-------E-ECSSCEEEEEEBTTSSEEEE-E-TTEE
T ss_pred             cCCeEECCC--CEEEEEECC------CC--EEEEEECCCCcEEE-------E-eCCCceEEEEECCCCCEEEE-E-CCeE
Confidence            356788542  445554332      22  45666665543211       1 23467999999999995554 4 4569


Q ss_pred             EEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---------CeEEEEeCCCcceecccccCCccEE
Q 022184           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------GHLRIMHWPSLRIILDEPKAHKSVL  158 (301)
Q Consensus        88 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~i~  158 (301)
                      .+||.++++..... .  .........++.++++|+|+++++....         ..-.+|.+........+........
T Consensus        76 ~~~d~~~g~~~~~~-~--~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pn  152 (297)
T 3g4e_A           76 CALNWKEQSAVVLA-T--VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISN  152 (297)
T ss_dssp             EEEETTTTEEEEEE-E--CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEE
T ss_pred             EEEECCCCcEEEEE-e--cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecccccc
Confidence            99998766532111 1  1111122457889999999966654321         2234444432222222223334568


Q ss_pred             EEEecCCCcEEE-EEeCCCcEEEEeC--CCCceE--EEEee--cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184          159 DMDFSLDSEFLA-TTSTDGSARIWKT--EDGVAW--TFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (301)
Q Consensus       159 ~~~~~~~~~~l~-~~~~d~~i~i~d~--~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  231 (301)
                      .++|+||++.|+ +.+.++.|.+||+  .++...  ..+..  .....+..+++.++|+.     .++....+.|..||.
T Consensus       153 gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l-----wva~~~~~~v~~~d~  227 (297)
T 3g4e_A          153 GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL-----WVACYNGGRVIRLDP  227 (297)
T ss_dssp             EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE-----EEEEETTTEEEEECT
T ss_pred             ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE-----EEEEcCCCEEEEEcC
Confidence            899999998664 4556788999987  455432  12221  11235788999999974     344445678999999


Q ss_pred             cCceEeeeeeccCCCcEEEEEc-CCCCEEEEeeC
Q 022184          232 STWNKIGHKRLLRKPASVLSIS-LDGKYLAMGSK  264 (301)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~  264 (301)
                      .+++.+..+..+...+++++|. |+++.|++++.
T Consensus       228 ~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          228 VTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            9888888887776789999998 88887766654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.60  E-value=1.9e-12  Score=106.70  Aligned_cols=238  Identities=9%  Similarity=-0.012  Sum_probs=148.7

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (301)
                      ....++|.++   ++++++..      ..+  +|+.+++.+..+..      .... ..... ++|+++++.|+++..++
T Consensus       132 ~P~~la~d~~---g~lyv~d~------~~~--~I~~id~~~g~~~~------~~~~-~~~~~-ia~~~~g~~l~~~d~~~  192 (409)
T 3hrp_A          132 YMWGIAAVGN---NTVLAYQR------DDP--RVRLISVDDNKVTT------VHPG-FKGGK-PAVTKDKQRVYSIGWEG  192 (409)
T ss_dssp             CEEEEEECST---TEEEEEET------TTT--EEEEEETTTTEEEE------EEET-CCBCB-CEECTTSSEEEEEBSST
T ss_pred             CceEEEEeCC---CCEEEEec------CCC--cEEEEECCCCEEEE------eecc-CCCCc-eeEecCCCcEEEEecCC
Confidence            4567888865   44555433      123  34455555443321      1111 23344 99999999999888766


Q ss_pred             --cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecc----cccCCcc--E
Q 022184           86 --GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD----EPKAHKS--V  157 (301)
Q Consensus        86 --~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~----~~~~~~~--i  157 (301)
                        .|.+++.......... .. .. ......+.+++++|++..|+++..++.|+.||..++.....    .......  .
T Consensus       193 ~~~I~~~d~~~~~~~~~~-g~-~~-~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~  269 (409)
T 3hrp_A          193 THTVYVYMKASGWAPTRI-GQ-LG-STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPG  269 (409)
T ss_dssp             TCEEEEEEGGGTTCEEEE-EE-CC-TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSC
T ss_pred             CceEEEEEcCCCceeEEe-ee-cc-chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCcc
Confidence              6777776554331111 00 00 01234567899999555566677788999999887653221    1111111  1


Q ss_pred             EEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeecC--------------CCCeeEEEEccCCCcceEEEEEEeC-
Q 022184          158 LDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS--------------DEKIELCRFSKDGTKPFLFCTVQRG-  221 (301)
Q Consensus       158 ~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~~~~~-  221 (301)
                      ..++|+|+ +.++++-..++.|+.|+....  ...+....              -.....++++|+|+.     .++.. 
T Consensus       270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l-----yvad~~  342 (409)
T 3hrp_A          270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF-----YIVDGF  342 (409)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE-----EEEETT
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE-----EEEeCC
Confidence            28999995 666666667889999997643  33333321              124789999999984     45666 


Q ss_pred             CcceEEEEEccCceEeeeeecc---------------CCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          222 DKALLAVYDISTWNKIGHKRLL---------------RKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                      .++.|+.||+.+++.. .+..+               -.....++++++|.++++-..+++|+.+++
T Consensus       343 ~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          343 KGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            7889999998777643 23222               135788999999887777778888888765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.59  E-value=6.3e-13  Score=107.93  Aligned_cols=267  Identities=10%  Similarity=0.059  Sum_probs=160.4

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEE-----------C--CCCCeEEEE-ecCCcEEEEEEcCCccc
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-----------N--PSGDDFVCS-TTNGGCKLFEVYGGATD   98 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-----------~--~~~~~l~~~-~~d~~i~~w~~~~~~~~   98 (301)
                      ....+.+.+.+++.....+ ......+..-.+....+.|           +  +++++|+.. ..+++|+++|+.+....
T Consensus        41 ~~d~la~vDvdp~s~ty~~-vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~  119 (462)
T 2ece_A           41 RADFIAVVDVNPKSETYSK-IVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPRE  119 (462)
T ss_dssp             CCCEEEEEECCTTSTTTTS-EEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTS
T ss_pred             CCCeEEEEECCCCCCCcce-EEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCC
Confidence            4556777778775432211 1111122222223333444           6  788877755 45789999999755322


Q ss_pred             cccccccC-CCC---CCCCCeeEEEEeeCCCEEEEeecC------CeEEEEeCCCcceecccccCCc---cEEEEEecCC
Q 022184           99 INLLAKKM-PPL---QDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEPKAHK---SVLDMDFSLD  165 (301)
Q Consensus        99 ~~~~~~~~-~~~---~~~~~v~~~~~s~~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~---~i~~~~~~~~  165 (301)
                      .++..... ..+   ........+..+|+| +++++..+      |.|.++|.++++.+.+......   --..+-|+|+
T Consensus       120 p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~  198 (462)
T 2ece_A          120 PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLP  198 (462)
T ss_dssp             CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETT
T ss_pred             ceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCC
Confidence            22211100 000   011244567888999 66666555      7899999999988777753322   2346888999


Q ss_pred             CcEEEEEe-------------------CCCcEEEEeCCCCceEEEEeec-CCCCeeEEEE--ccCCCcceEEEEEE-eCC
Q 022184          166 SEFLATTS-------------------TDGSARIWKTEDGVAWTFLTRN-SDEKIELCRF--SKDGTKPFLFCTVQ-RGD  222 (301)
Q Consensus       166 ~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~--~~~~~~~~~~~~~~-~~~  222 (301)
                      ++.+++..                   .+.+|.+||+.+++.+.++... .......+.|  +|++++.|+.+-++ ...
T Consensus       199 ~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~L  278 (462)
T 2ece_A          199 NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDL  278 (462)
T ss_dssp             TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTC
T ss_pred             CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCC
Confidence            99888874                   3689999999998888887754 2223455656  99999854322100 114


Q ss_pred             cceEEEEEccCceE--eeee--ec----------------cCCCcEEEEEcCCCCEEEEeeC-CCcEEEEeCCC---cee
Q 022184          223 KALLAVYDISTWNK--IGHK--RL----------------LRKPASVLSISLDGKYLAMGSK-DGDICVVDVKK---MEI  278 (301)
Q Consensus       223 ~~~i~~~d~~~~~~--~~~~--~~----------------~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~~---~~~  278 (301)
                      +++|.+|....++.  ...+  ..                .......+.+||||++|+++.. .+.|.+||+..   .++
T Consensus       279 ss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~l  358 (462)
T 2ece_A          279 SSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVL  358 (462)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred             CceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence            56777765544321  1111  00                0245788999999999998865 57899999863   344


Q ss_pred             eccccccc-------c-----CccEEEEEEccCCC
Q 022184          279 NHWSKRLH-------L-----GTSIALVEFCPTQR  301 (301)
Q Consensus       279 ~~~~~~~~-------~-----~~~v~~~~~spdg~  301 (301)
                      +..+..+-       .     .+....++++||||
T Consensus       359 v~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk  393 (462)
T 2ece_A          359 TGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR  393 (462)
T ss_dssp             EEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS
T ss_pred             EEEEEeCCeeccccccccccCCCCCCEEEEcCCCC
Confidence            44443220       0     01357899999996

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.59  E-value=5.1e-14  Score=124.13  Aligned_cols=223  Identities=10%  Similarity=0.028  Sum_probs=144.3

Q ss_pred             ccCCcceEEEECCCCCeEEEEec-----CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC-
Q 022184           61 ESEGDPMTIAVNPSGDDFVCSTT-----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-  134 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~-----d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-  134 (301)
                      +|...+..++|||||++||.+..     ...|++||+++++.......        ......++|+ |++.|+.++.+. 
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--------~~k~~~~~Ws-Dg~~l~y~~~~~~  196 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--------DVKFSGISWL-GNEGFFYSSYDKP  196 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--------EEESCCCEEE-TTTEEEEEESSCC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--------CceeccEEEe-CCCEEEEEEecCc
Confidence            45667899999999999985432     24799999998874221110        0112467899 999999888774 


Q ss_pred             ------------eEEEEeCCCcce----eccccc-CCccEEEEEecCCCcEEEEEeC----CCcEEEEeCCCCc-eEEEE
Q 022184          135 ------------HLRIMHWPSLRI----ILDEPK-AHKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGV-AWTFL  192 (301)
Q Consensus       135 ------------~i~v~d~~~~~~----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~-~~~~~  192 (301)
                                  .|++|++.+...    +..... +......+.|+|||++|+....    +..|+++|+.++. ....+
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                        399999876542    222222 2335778999999998765442    2489999998764 34445


Q ss_pred             eecCCCCeeEEEEccCCCcceEEEEEEeC--CcceEEEEEccCceE--eeeeeccCCCcEEEEEcCCCCEEEEeeCCC--
Q 022184          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG--  266 (301)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--  266 (301)
                      ..+.. ..... +++++..+++   .+..  ..+.|..+|+.++..  ...+..+...+.  .|++++++|+....++  
T Consensus       277 ~~~~~-~~~~~-~~~~g~~l~~---~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~  349 (693)
T 3iuj_A          277 QGDLD-ADVSL-VDNKGSTLYL---LTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT  349 (693)
T ss_dssp             ECSSS-SCEEE-EEEETTEEEE---EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE
T ss_pred             eCCCC-ceEEE-EeccCCEEEE---EECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe
Confidence            44433 23333 7788876432   2221  247899999987653  233444555544  8999998887776544  


Q ss_pred             -cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          267 -DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       267 -~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                       .|++|++..+...... ... ...+..+.++||++
T Consensus       350 ~~l~~~d~~g~~~~~l~-~p~-~~~~~~~~~~~d~~  383 (693)
T 3iuj_A          350 ARVEQFDYEGKRVREVA-LPG-LGSVSGFNGKHDDP  383 (693)
T ss_dssp             EEEEEECTTSCEEEEEC-CSS-SSEEEECCCCTTCS
T ss_pred             eEEEEEECCCCeeEEee-cCC-CceEEeeecCCCCC
Confidence             6899999865543322 223 45677777777763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.58  E-value=1.9e-12  Score=102.66  Aligned_cols=231  Identities=13%  Similarity=0.079  Sum_probs=143.8

Q ss_pred             eEEEeeeecCCCcc-EEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC
Q 022184            7 VTCGSWIKRPENVN-LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (301)
Q Consensus         7 v~~~~w~~~~~~~~-~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (301)
                      .....|.++   ++ ++.++..      .+  +|+.+++.+. .       ..+..+...+..++++++|+.+++...++
T Consensus        47 ~egp~~~~~---g~~l~~~d~~------~~--~i~~~~~~g~-~-------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~  107 (305)
T 3dr2_A           47 SEGPAWWEA---QRTLVWSDLV------GR--RVLGWREDGT-V-------DVLLDATAFTNGNAVDAQQRLVHCEHGRR  107 (305)
T ss_dssp             EEEEEEEGG---GTEEEEEETT------TT--EEEEEETTSC-E-------EEEEESCSCEEEEEECTTSCEEEEETTTT
T ss_pred             ccCCeEeCC---CCEEEEEECC------CC--EEEEEeCCCC-E-------EEEeCCCCccceeeECCCCCEEEEECCCC
Confidence            356788876   44 4444332      23  3455555332 1       11233456789999999998666655567


Q ss_pred             cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEE----eec-------------CCeEEEEeCCCcceec
Q 022184           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA----GGV-------------DGHLRIMHWPSLRIIL  148 (301)
Q Consensus        86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~~-------------dg~i~v~d~~~~~~~~  148 (301)
                      .|.+|+.+ ++. ..+... .. ......+..++++|+|+++++    |..             .+.|..+|..+++...
T Consensus       108 ~v~~~~~~-g~~-~~~~~~-~~-~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~  183 (305)
T 3dr2_A          108 AITRSDAD-GQA-HLLVGR-YA-GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR  183 (305)
T ss_dssp             EEEEECTT-SCE-EEEECE-ET-TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred             EEEEECCC-CCE-EEEEec-cC-CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence            79998875 332 111110 00 011234678999999998876    332             2567888876665433


Q ss_pred             ccccCCccEEEEEecCCCcEEEEEeCC------CcEEEEeCCCCceE--EEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184          149 DEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      ..  .......++|+||++.|+.+...      +.|.+|++..+...  ..+.......+..+++.++|+.      ..+
T Consensus       184 ~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l------wv~  255 (305)
T 3dr2_A          184 MA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL------WSS  255 (305)
T ss_dssp             EE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE------EEC
T ss_pred             Ee--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE------EEe
Confidence            22  33456789999999977777655      68999998765411  1221112234567899999983      444


Q ss_pred             CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      ..+ .|.+||.. ++.+..+.... .+..++|+|+++.|+.++.++ +..++
T Consensus       256 ~~~-gv~~~~~~-g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          256 SGT-GVCVFDSD-GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             CSS-EEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             cCC-cEEEECCC-CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            444 49999984 55665565544 588999999998888887764 44333

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.58  E-value=7.9e-13  Score=106.69  Aligned_cols=232  Identities=9%  Similarity=-0.012  Sum_probs=146.4

Q ss_pred             CcceEEEECCCCCeEEEEec--CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-----CCeE
Q 022184           64 GDPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHL  136 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~--d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i  136 (301)
                      ..+..++++|+|+.+++...  ++.++||.+.+++. ..+.........+...+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            57899999999998888642  34366777653322 1111000111124467899999999876665443     5789


Q ss_pred             EEEeCCCcceeccccc------CCccEEEEEecCCCc-EEEEEe---CCCcEEEEeCCCCceEEEEeecC----------
Q 022184          137 RIMHWPSLRIILDEPK------AHKSVLDMDFSLDSE-FLATTS---TDGSARIWKTEDGVAWTFLTRNS----------  196 (301)
Q Consensus       137 ~v~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~-~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~----------  196 (301)
                      .+||+.+++.+..+..      +...+..++++|++. .+++-.   .++.|.+||+.+++....+..+.          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            9999998875544322      123568999998654 445554   57899999998887655442210          


Q ss_pred             ------------------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC---ce-----Eee--eeeccCCCcE
Q 022184          197 ------------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WN-----KIG--HKRLLRKPAS  248 (301)
Q Consensus       197 ------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---~~-----~~~--~~~~~~~~v~  248 (301)
                                        ...+..++|+|+++.+|    ++......+..++...   +.     ...  ....+.....
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd  251 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY----LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD  251 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE----EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEE----EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence                              01257899999998632    2223334666665421   10     000  1112334566


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          249 VLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       249 ~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .++++++|+++++...++.|.+||..+++........+ ...+.+++|.++|+
T Consensus       252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~-~~~p~~va~~~~g~  303 (343)
T 2qe8_A          252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK-LSWTDSFNFGSDGY  303 (343)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG-GSCEEEEEECTTSC
T ss_pred             eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc-eecCCeeEECCCCc
Confidence            79999999988888888999999986666443332222 45689999999874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.57  E-value=1.5e-12  Score=106.72  Aligned_cols=212  Identities=9%  Similarity=-0.002  Sum_probs=135.0

Q ss_pred             EEEECCCCCeEEEEe----------cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec--CCe
Q 022184           68 TIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH  135 (301)
Q Consensus        68 ~~~~~~~~~~l~~~~----------~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~  135 (301)
                      .++++|||++|+++.          .++.|.++|..+.+....+................+.|+|||++++++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            899999999888775          36789999998887644432210011101133467899999999998874  578


Q ss_pred             EEEEeCCCcceecccccCCc-------cEEEEEecCCCcEEE-------------------------------------E
Q 022184          136 LRIMHWPSLRIILDEPKAHK-------SVLDMDFSLDSEFLA-------------------------------------T  171 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~-------------------------------------~  171 (301)
                      |.+.|+.+++.+..+.....       .-.-+.++++|++++                                     .
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~  281 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW  281 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence            99999999887665543211       001133444444333                                     2


Q ss_pred             EeCCCcEEEEeCCCCceEE--EEeec--C-------CCCeeEEEEccCCCcceEEEEEEeC-------CcceEEEEEccC
Q 022184          172 TSTDGSARIWKTEDGVAWT--FLTRN--S-------DEKIELCRFSKDGTKPFLFCTVQRG-------DKALLAVYDIST  233 (301)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~--~~~~~--~-------~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~d~~~  233 (301)
                      .+..+.+.+.|+.......  .+...  .       ......++++|+++++|+..  ...       ..+.|.++|..+
T Consensus       282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~--~~~~~gthk~~s~~VsVID~~T  359 (426)
T 3c75_H          282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV--DQRDEWKHKAASRFVVVLNAET  359 (426)
T ss_dssp             EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE--EECCTTCTTSCEEEEEEEETTT
T ss_pred             EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEe--cccccccccCCCCEEEEEECCC
Confidence            2333344444443322110  01000  0       01122378999998755321  111       246899999999


Q ss_pred             ceEeeeeeccCCCcEEEEEcCCCC-EEEEee-CCCcEEEEeCCCceeeccc
Q 022184          234 WNKIGHKRLLRKPASVLSISLDGK-YLAMGS-KDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~i~~~~~~~~~~~~  282 (301)
                      .+.+..+.... ....+.|+|||+ ++++.. .++.|.++|+.+++.+..+
T Consensus       360 ~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          360 GERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            99888776533 478899999999 888887 5899999999999988875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.54  E-value=2.8e-11  Score=98.48  Aligned_cols=202  Identities=13%  Similarity=0.048  Sum_probs=134.6

Q ss_pred             cceEEEECCCCCeEEEEec--CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC-CEEEEeecCCeEEEEeC
Q 022184           65 DPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHW  141 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~--d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~d~  141 (301)
                      ....++|+|||++|+++..  ++.|.++| .+++....+       +...   .++.+.|++ +.+++.+.||.+.++|.
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~-------i~~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL-------LSSP---TCYHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE-------cCCC---ceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence            4568999999999998874  47899999 877652220       1111   124556655 44566677999999999


Q ss_pred             CCcceecccc-----cCCccE-EEEEecCCCcEEEEEeCCCcEEEEeCCCCce--EEEEeec---------CCCCeeEEE
Q 022184          142 PSLRIILDEP-----KAHKSV-LDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRN---------SDEKIELCR  204 (301)
Q Consensus       142 ~~~~~~~~~~-----~~~~~i-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~---------~~~~v~~~~  204 (301)
                       +++......     ....++ ....+.+++..++..+..+.+.+.|+..+..  +..+...         .......+.
T Consensus       195 -~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~  273 (373)
T 2mad_H          195 -AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA  273 (373)
T ss_pred             -CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence             776552211     111222 2345677666555555778999999975532  2222111         012244578


Q ss_pred             EccCCCcceEEEEEEeC-------CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCC-EEEEee-CCCcEEEEeCCC
Q 022184          205 FSKDGTKPFLFCTVQRG-------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLAMGS-KDGDICVVDVKK  275 (301)
Q Consensus       205 ~~~~~~~~~~~~~~~~~-------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~i~~~~~  275 (301)
                      ++|+++.+|+.  ....       ..+.|.++|..+++.+..+.. ......++|+|||+ +++++. .++.|.++|+.+
T Consensus       274 ~s~d~~~lyV~--~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          274 YLKSSDGIYLL--TSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             ECCCCCEEEEE--eccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            99999875431  1111       246899999999998887754 34679999999999 777776 489999999999


Q ss_pred             ceeecc
Q 022184          276 MEINHW  281 (301)
Q Consensus       276 ~~~~~~  281 (301)
                      ++.+..
T Consensus       351 ~~vv~~  356 (373)
T 2mad_H          351 GDQDQS  356 (373)
T ss_pred             CCEEee
Confidence            998877

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.54  E-value=1.2e-12  Score=115.41  Aligned_cols=250  Identities=10%  Similarity=0.045  Sum_probs=148.9

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ..+..++|+||   ++.+|.+..... +....|++++++  +......     .+.  ......++|+ |++.|+.++.+
T Consensus       129 ~~l~~~~~SpD---g~~lAy~~~~~G-~~~~~i~v~dl~--tg~~~~~-----~~~--~~k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          129 TALDQLSFSRD---GRILAYSLSLAG-SDWREIHLMDVE--SKQPLET-----PLK--DVKFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             CEEEEEEECTT---SSEEEEEEECSS-CCEEEEEEEETT--TCSEEEE-----EEE--EEESCCCEEE-TTTEEEEEESS
T ss_pred             EEEEEEEECCC---CCEEEEEEecCC-CceEEEEEEECC--CCCCCcc-----ccC--CceeccEEEe-CCCEEEEEEec
Confidence            35778899988   667776442111 122344555544  3332111     111  1113578899 99999988877


Q ss_pred             Cc-------------EEEEEEcCCccccccccccCCCCC-CCCCeeEEEEeeCCCEEEEeec----CCeEEEEeCCCcc-
Q 022184           85 GG-------------CKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGV----DGHLRIMHWPSLR-  145 (301)
Q Consensus        85 ~~-------------i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----dg~i~v~d~~~~~-  145 (301)
                      ..             |++|++.+..........   ... +......+.|+|||++|+....    +..|+++|+.++. 
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~  271 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG---AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA  271 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEES---CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEe---cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence            43             888888765432222111   111 2334678999999998865443    3589999997763 


Q ss_pred             eecccccCCccEEEEEecCCCcEEEEEe-CC---CcEEEEeCCCCce--EEEEeecCCCCeeEEEEccCCCcceEEEEEE
Q 022184          146 IILDEPKAHKSVLDMDFSLDSEFLATTS-TD---GSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d---~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                      ....+..+....... |++++..|+..+ .+   +.|..+|+.++..  ...+..+... +.  .|+++++++++  ...
T Consensus       272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~--~~s~~g~~lv~--~~~  345 (693)
T 3iuj_A          272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL--TVHSGSGYLFA--EYM  345 (693)
T ss_dssp             CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE--EEEEETTEEEE--EEE
T ss_pred             ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE--EEEEECCEEEE--EEE
Confidence            233444444444444 666666555444 33   5789999987654  2344444433 33  89999987321  222


Q ss_pred             eCCcceEEEEEccCceEeeeeec-cCCCcEEEEEcCCCCEEEEeeCC----CcEEEEeCCCcee
Q 022184          220 RGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMGSKD----GDICVVDVKKMEI  278 (301)
Q Consensus       220 ~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d----~~i~i~~~~~~~~  278 (301)
                      ......|.+||+..+.. ..+.. ....+..+.++|+++.++....+    +.++.||+.+++.
T Consensus       346 ~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          346 VDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             ETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             ECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            22334799999886543 33332 33456677888888777666544    7899999987653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.54  E-value=8.5e-13  Score=104.74  Aligned_cols=217  Identities=9%  Similarity=-0.032  Sum_probs=139.1

Q ss_pred             ccCCcceEEEECCCCCe-EEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184           61 ESEGDPMTIAVNPSGDD-FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~-l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  139 (301)
                      ..........|+|+++. +++...++.|..|+.. ++.  ....      .....+..++++++|+++++...++.|.+|
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~--~~~~------~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV--DVLL------DATAFTNGNAVDAQQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE--EEEE------ESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE--EEEe------CCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence            34556788999999984 5565667889999863 332  1111      133567899999999966665556789999


Q ss_pred             eCCCcceecccccC-----CccEEEEEecCCCcEEEE----EeC-------------CCcEEEEeCCCCceEEEEeecCC
Q 022184          140 HWPSLRIILDEPKA-----HKSVLDMDFSLDSEFLAT----TST-------------DGSARIWKTEDGVAWTFLTRNSD  197 (301)
Q Consensus       140 d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~  197 (301)
                      +.. ++.. .+...     ...+.+++++|+|+++++    +..             .+.|..+|..+++.....  .. 
T Consensus       113 ~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~-  187 (305)
T 3dr2_A          113 DAD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL-  187 (305)
T ss_dssp             CTT-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE-
T ss_pred             CCC-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC-
Confidence            975 4432 22111     124678999999998886    332             246778887666654433  22 


Q ss_pred             CCeeEEEEccCCCcceEEEEEEeCC-----cceEEEEEccCceEe--eee-eccCCCcEEEEEcCCCCEEEEeeCCCcEE
Q 022184          198 EKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWNKI--GHK-RLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (301)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~d~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  269 (301)
                      .....++|+|+++.++    ++...     .+.|.+||+......  ..+ .........++++++|++.++ +.+ .|.
T Consensus       188 ~~p~gl~~spdg~~ly----v~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~  261 (305)
T 3dr2_A          188 DHPNGLAFSPDEQTLY----VSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVC  261 (305)
T ss_dssp             SSEEEEEECTTSSEEE----EEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEE
T ss_pred             CCCcceEEcCCCCEEE----EEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEE
Confidence            2478899999999632    22222     368999998754311  111 112344567899999995444 444 499


Q ss_pred             EEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       270 i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +|+.. ++.+..+. .+  ..+.+++|+||++
T Consensus       262 ~~~~~-g~~~~~~~-~~--~~~~~~~f~~d~~  289 (305)
T 3dr2_A          262 VFDSD-GQLLGHIP-TP--GTASNCTFDQAQQ  289 (305)
T ss_dssp             EECTT-SCEEEEEE-CS--SCCCEEEECTTSC
T ss_pred             EECCC-CCEEEEEE-CC--CceeEEEEeCCCC
Confidence            99984 55555442 22  3588999998874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.51  E-value=1e-11  Score=100.15  Aligned_cols=220  Identities=13%  Similarity=0.100  Sum_probs=143.3

Q ss_pred             cceEEEECCCCCeEEEEec--CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           65 DPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~--d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      ....++|+|||++++++..  ++.|.++|+.+.+....+..        .+ . ...+....+.+++.+.||.+.+.++.
T Consensus       138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v--------~g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~  207 (386)
T 3sjl_D          138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV--------PD-C-YHIFPTAPDTFFMHCRDGSLAKVAFG  207 (386)
T ss_dssp             CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--------CS-E-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC--------CC-c-ceeecCCCceeEEECCCCCEEEEECC
Confidence            5778999999999988864  68899999998876433321        11 1 22333345667777788888888886


Q ss_pred             C-cceecccc----cCCccEE-EEEec-CCCcEEEEEeCCCcEEEEeCCCCce--EEEEee---------cCCCCeeEEE
Q 022184          143 S-LRIILDEP----KAHKSVL-DMDFS-LDSEFLATTSTDGSARIWKTEDGVA--WTFLTR---------NSDEKIELCR  204 (301)
Q Consensus       143 ~-~~~~~~~~----~~~~~i~-~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~---------~~~~~v~~~~  204 (301)
                      + ++......    ....++. ...|. ++|++++ .+.+|+|.+.|+.+...  ...+..         -.......++
T Consensus       208 ~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a  286 (386)
T 3sjl_D          208 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA  286 (386)
T ss_dssp             SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred             CCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence            5 44321111    1112222 24564 6776544 55689999999976542  222210         0011244678


Q ss_pred             EccCCCcceEEEEEEe-----CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCC-EEEEee-CCCcEEEEeCCCce
Q 022184          205 FSKDGTKPFLFCTVQR-----GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLAMGS-KDGDICVVDVKKME  277 (301)
Q Consensus       205 ~~~~~~~~~~~~~~~~-----~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~i~~~~~~~  277 (301)
                      ++++++.+|+..--..     .....|.++|+.+++.+..+... ..+..+++++|++ +|++.. .++.|.++|..+++
T Consensus       287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence            8999998554211000     12368999999999988777653 4678999999997 666654 58999999999999


Q ss_pred             eeccccccccCccEEEEEEccC
Q 022184          278 INHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       278 ~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      .+..+..   .+..+.|.+++|
T Consensus       366 ~~~~i~~---~~~p~~l~~s~d  384 (386)
T 3sjl_D          366 ELRSVNQ---LGHGPQVITTAD  384 (386)
T ss_dssp             EEEEECC---CCSSCCEEEECC
T ss_pred             EEEEecC---CCCCceeEECCc
Confidence            9887743   344567777777

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=9.4e-12  Score=100.37  Aligned_cols=250  Identities=8%  Similarity=-0.083  Sum_probs=149.5

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec--
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT--   83 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--   83 (301)
                      .+..++++++   +++++......    ++.++||.++ . ..+...+.......+|...+..++++++++.+++-..  
T Consensus        18 ~p~~va~~~~---g~~~v~~~~~~----~~~~~l~~~~-~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~   88 (343)
T 2qe8_A           18 APGNITLTPD---GRLFLSLHQFY----QPEMQVAELT-Q-DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ   88 (343)
T ss_dssp             CEEEEEECTT---SCEEEEECGGG----CCSCSEEEEE-T-TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH
T ss_pred             CcceEEECCC---CCEEEEeCCCC----CCceEEEEEC-C-CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC
Confidence            4567777765   45555532111    1125777776 3 2333222211223356678999999999876655433  


Q ss_pred             ---CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEE-EEee---cCCeEEEEeCCCcceecccccC---
Q 022184           84 ---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGG---VDGHLRIMHWPSLRIILDEPKA---  153 (301)
Q Consensus        84 ---d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~---~dg~i~v~d~~~~~~~~~~~~~---  153 (301)
                         ++.|.+||+.+++....+... .....+...+..+++++++..+ ++-.   .++.|.+||+.+++....+..|   
T Consensus        89 ~~~~~~i~~~d~~tg~~~~~~~~~-~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~  167 (343)
T 2qe8_A           89 SKSVPKLVAWDTLNNQLSRVIYLP-PPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI  167 (343)
T ss_dssp             HTSCCEEEEEETTTTEEEEEEECC-TTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred             cCCCCeEEEEECCCCeEEEEEECC-hhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence               578999999877643222111 1111233456899999865555 4444   5789999999877654333211   


Q ss_pred             --------------------------CccEEEEEecCCCcEEEEEeCCC-cEEEEeCC---CCc--------eEEEEeec
Q 022184          154 --------------------------HKSVLDMDFSLDSEFLATTSTDG-SARIWKTE---DGV--------AWTFLTRN  195 (301)
Q Consensus       154 --------------------------~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~---~~~--------~~~~~~~~  195 (301)
                                                ...+..++|+|+++.|+.+..++ .+..++..   .+.        .+... .+
T Consensus       168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~  246 (343)
T 2qe8_A          168 APEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SE  246 (343)
T ss_dssp             SCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EE
T ss_pred             cccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-cc
Confidence                                      01357899999999888877665 44444432   111        01111 12


Q ss_pred             CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc-CCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      . .....++++++|..     .++...++.|.+||..+++........ ...+..++|+++++++++.+..+.+.+|+
T Consensus       247 ~-g~pdgia~d~~G~l-----~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          247 K-PICDGISIDKDHNI-----YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             C-CSCSCEEECTTCCE-----EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             C-CCCceEEECCCCCE-----EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            1 24678999999875     456667889999998555543222221 34678999999998888877655554444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.49  E-value=4.1e-11  Score=95.94  Aligned_cols=226  Identities=10%  Similarity=-0.008  Sum_probs=137.6

Q ss_pred             EEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcE
Q 022184            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (301)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i   87 (301)
                      .+.+|+++.  ..++.++..      .+  .|+.+++.+.....       + .....+.+++|+++|+++++. .++ |
T Consensus        52 egp~~~~~~--~~l~~~d~~------~~--~i~~~d~~~~~~~~-------~-~~~~~v~~i~~~~dg~l~v~~-~~g-l  111 (326)
T 2ghs_A           52 EGPTFDPAS--GTAWWFNIL------ER--ELHELHLASGRKTV-------H-ALPFMGSALAKISDSKQLIAS-DDG-L  111 (326)
T ss_dssp             EEEEEETTT--TEEEEEEGG------GT--EEEEEETTTTEEEE-------E-ECSSCEEEEEEEETTEEEEEE-TTE-E
T ss_pred             cCCeEeCCC--CEEEEEECC------CC--EEEEEECCCCcEEE-------E-ECCCcceEEEEeCCCeEEEEE-CCC-E
Confidence            456788652  344444332      12  46666665543311       1 123579999999999877654 444 8


Q ss_pred             EEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec------CCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        88 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      .+||.++++... +..  .........+..++++|+|+++++...      .+.|..++  +++.. .+.........++
T Consensus       112 ~~~d~~~g~~~~-~~~--~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~  185 (326)
T 2ghs_A          112 FLRDTATGVLTL-HAE--LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSIC  185 (326)
T ss_dssp             EEEETTTCCEEE-EEC--SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEE
T ss_pred             EEEECCCCcEEE-Eee--CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeE
Confidence            999987665321 111  100011245789999999987665432      24566666  44432 2222224567899


Q ss_pred             ecCCCcEEEEE-eCCCcEEEEeCC--CC-ce--EEEEee--cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          162 FSLDSEFLATT-STDGSARIWKTE--DG-VA--WTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       162 ~~~~~~~l~~~-~~d~~i~i~d~~--~~-~~--~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      |+|+++.++.+ +.++.|.+||+.  ++ +.  ...+..  .....+..+++.++|..     .++...++.|.+||. +
T Consensus       186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l-----wva~~~~~~v~~~d~-~  259 (326)
T 2ghs_A          186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI-----WNARWGEGAVDRYDT-D  259 (326)
T ss_dssp             ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE-----EEEEETTTEEEEECT-T
T ss_pred             EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE-----EEEEeCCCEEEEECC-C
Confidence            99999866554 456899999986  55 31  112211  12234678999999974     233334578999998 5


Q ss_pred             ceEeeeeeccCCCcEEEEEc-CCCCEEEEeeCC
Q 022184          234 WNKIGHKRLLRKPASVLSIS-LDGKYLAMGSKD  265 (301)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d  265 (301)
                      ++.+..+......+++++|+ |+++.|++++..
T Consensus       260 g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          260 GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            66666666666679999998 888777665543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=1.2e-12  Score=107.32  Aligned_cols=217  Identities=10%  Similarity=-0.049  Sum_probs=140.9

Q ss_pred             CCCCeEEEEecC-----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee----------cCCeEE
Q 022184           73 PSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----------VDGHLR  137 (301)
Q Consensus        73 ~~~~~l~~~~~d-----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~  137 (301)
                      +++++++++...     +.|.++|..+.+....+...       ..+  .+.++||+++++++.          .++.|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-------~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs  152 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-------FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE  152 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-------SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-------CCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence            477777666542     68999999888764443321       123  799999999988876          367899


Q ss_pred             EEeCCCcceecccccC-------CccEEEEEecCCCcEEEEEeC--CCcEEEEeCCCCceEEEEeecCC------CCeeE
Q 022184          138 IMHWPSLRIILDEPKA-------HKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSD------EKIEL  202 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~------~~v~~  202 (301)
                      ++|..+++.+..+.-.       ......+.++|||++++.+..  ++.|.+.|+.+++.+..+.....      ..-..
T Consensus       153 viD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~  232 (426)
T 3c75_H          153 VFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVF  232 (426)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEE
Confidence            9999998877665421       123467899999999988874  57899999999988877754210      00111


Q ss_pred             EEEccCCCcceEEE--------------------------------EEEeCCcceEEEEEccCceEe--eeeec------
Q 022184          203 CRFSKDGTKPFLFC--------------------------------TVQRGDKALLAVYDISTWNKI--GHKRL------  242 (301)
Q Consensus       203 ~~~~~~~~~~~~~~--------------------------------~~~~~~~~~i~~~d~~~~~~~--~~~~~------  242 (301)
                      +.++++|+..++-.                                ++.....+.+.+.|+......  ..+..      
T Consensus       233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i  312 (426)
T 3c75_H          233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER  312 (426)
T ss_dssp             EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred             EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence            33444444311100                                111223456777776543321  11110      


Q ss_pred             ----cCCCcEEEEEcCCCCEEEEeeC----------CCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          243 ----LRKPASVLSISLDGKYLAMGSK----------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       243 ----~~~~v~~~~~s~~~~~l~~~~~----------d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                          .......++++|+++.+++...          ++.|.++|+.+.+.+..+..   .....+++|+|||+
T Consensus       313 ~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~  382 (426)
T 3c75_H          313 ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAE  382 (426)
T ss_dssp             GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSS
T ss_pred             ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCC
Confidence                0112223789999888777642          35799999999999988753   33688999999986

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.48  E-value=7.2e-12  Score=101.07  Aligned_cols=242  Identities=7%  Similarity=-0.097  Sum_probs=142.9

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe----------cCCcEEEEEEcCCccccccccccCC
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMP  107 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~~w~~~~~~~~~~~~~~~~~  107 (301)
                      .+..+|....+...      .+..-..+  .+.++||+++++++.          .++.|.+||..+.+....+......
T Consensus        47 ~vsvID~~t~~v~~------~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~  118 (368)
T 1mda_H           47 ENWVSCAGCGVTLG------HSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP  118 (368)
T ss_dssp             EEEEEETTTTEEEE------EEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred             eEEEEECCCCeEEE------EEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc
Confidence            45556665554432      22222334  799999999998886          3688999999988775444321000


Q ss_pred             CCCCCCCeeEEEEeeCCCEEEEeec--CCeEEE--EeCCCcceecccccCC-------ccEEEEEe--------------
Q 022184          108 PLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRI--MHWPSLRIILDEPKAH-------KSVLDMDF--------------  162 (301)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~v--~d~~~~~~~~~~~~~~-------~~i~~~~~--------------  162 (301)
                      .+........++++|||++++++..  +..+.+  +|..+-   ..+....       +.-.-+++              
T Consensus       119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv---~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~  195 (368)
T 1mda_H          119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD---QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA  195 (368)
T ss_dssp             SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE---EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred             ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhc---eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccc
Confidence            0001123567999999999998875  467888  888651   1111000       00000111              


Q ss_pred             -----------------------cCCCcEEEEEeCCCcEEEEeCCCCc--eEEEEeec------C---CCCeeEEEEccC
Q 022184          163 -----------------------SLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRN------S---DEKIELCRFSKD  208 (301)
Q Consensus       163 -----------------------~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~------~---~~~v~~~~~~~~  208 (301)
                                             .+++..++..+. +.+.+.|+....  .+..+...      .   ......++++|+
T Consensus       196 ~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d  274 (368)
T 1mda_H          196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN  274 (368)
T ss_dssp             CCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred             cccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence                                   222333333333 566666765432  11111110      0   011223789999


Q ss_pred             CCcceEEEEEEe-C-C-----cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCE-EEEee-CCCcEEEEeCCCceee
Q 022184          209 GTKPFLFCTVQR-G-D-----KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY-LAMGS-KDGDICVVDVKKMEIN  279 (301)
Q Consensus       209 ~~~~~~~~~~~~-~-~-----~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~-~d~~i~i~~~~~~~~~  279 (301)
                      ++++|+   ... . .     +..+.++|+.+.+.+..+.... ....++|+|||++ +++.. .++.|.++|+.+++.+
T Consensus       275 g~~lyV---~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          275 TDGIMI---LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             TTEEEE---EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CCEEEE---EeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence            998442   222 1 2     2345699999999887776544 5789999999985 55555 4899999999999999


Q ss_pred             ccccccccCccEEEEEEcc
Q 022184          280 HWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       280 ~~~~~~~~~~~v~~~~~sp  298 (301)
                      ..+..   ......+++.+
T Consensus       351 ~~I~v---g~~P~~i~~~~  366 (368)
T 1mda_H          351 SSVEL---DKGPESLSVQN  366 (368)
T ss_dssp             EECCC---CSCCCEEECCC
T ss_pred             EEEEC---CCCCCEEEeec
Confidence            88753   33455666654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.45  E-value=1.3e-14  Score=118.11  Aligned_cols=202  Identities=13%  Similarity=0.037  Sum_probs=111.5

Q ss_pred             CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC
Q 022184           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (301)
Q Consensus        74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  153 (301)
                      ++..+++++.|+.|+.||..+++...+...         +.+.+..+..++..+++++.|+.|+.||..+++.+.....+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence            577899999999999999998887554432         22333334567778888889999999999888875444322


Q ss_pred             Cc-cEE-EEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184          154 HK-SVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (301)
Q Consensus       154 ~~-~i~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  231 (301)
                      .. .+. ...+. ++..+++++.|+.++.||.++|+.+..+..+.     ...++|++..     ++.++.++.|..||.
T Consensus        79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~-----v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSL-----LYLGRTEYTITMYDT  147 (369)
T ss_dssp             HHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCS
T ss_pred             CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCE-----EEEEecCCEEEEEEC
Confidence            11 110 11111 34567788889999999999999877665432     2345666665     566677899999999


Q ss_pred             cCceEeeeeeccCCCcEEEEEcCCC---CEEEEeeCCCcEEEEeCCCceeeccccccccCccE-EEEEEccCC
Q 022184          232 STWNKIGHKRLLRKPASVLSISLDG---KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI-ALVEFCPTQ  300 (301)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v-~~~~~spdg  300 (301)
                      ++++.+-.+....  .....++++.   ..+++++.||.|+.||..+++.+....  . ..++ ....+++||
T Consensus       148 ~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~-~~pv~~~~~~~~dg  215 (369)
T 2hz6_A          148 KTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--Y-ASPVVAFYVWQREG  215 (369)
T ss_dssp             SSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--C-SSCEEEEEECTTSS
T ss_pred             CCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec--C-CCceEEEEEecCCc
Confidence            9988654443221  1223334432   567788899999999999998776543  2 3344 344555555

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.38  E-value=5.6e-10  Score=90.88  Aligned_cols=190  Identities=14%  Similarity=0.119  Sum_probs=126.3

Q ss_pred             cceEEEECCCCCeEEEEecC------CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-------
Q 022184           65 DPMTIAVNPSGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-------  131 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------  131 (301)
                      ....+...|+| .++++..+      +.|.++|.++.+...+.....    ....--..+.|+|+++.+++..       
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~----~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~  213 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDR----GDQYLAYDFWWNLPNEVLVSSEWAVPNTI  213 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBC----TTCCCCCCEEEETTTTEEEECBCCCHHHH
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCC----CCccccceEEECCCCCEEEEccCcCcccc
Confidence            46678889999 66666555      689999998877644332111    0112235688999999888874       


Q ss_pred             ------------cCCeEEEEeCCCcceecccccC-C-ccEEEEEe--cCCCcEEEEEe------CCCcEEEEeCCCCceE
Q 022184          132 ------------VDGHLRIMHWPSLRIILDEPKA-H-KSVLDMDF--SLDSEFLATTS------TDGSARIWKTEDGVAW  189 (301)
Q Consensus       132 ------------~dg~i~v~d~~~~~~~~~~~~~-~-~~i~~~~~--~~~~~~l~~~~------~d~~i~i~d~~~~~~~  189 (301)
                                  .+.+|.+||+.+++.+.++... . .....+.|  +|++++++.+.      .+++|.+|....++..
T Consensus       214 ~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~  293 (462)
T 2ece_A          214 EDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN  293 (462)
T ss_dssp             TTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE
T ss_pred             ccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee
Confidence                        3689999999988766665543 1 24455655  99999877666      4568887766554321


Q ss_pred             --EEEeecC-----------------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC---ceEeeeeeccC---
Q 022184          190 --TFLTRNS-----------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLR---  244 (301)
Q Consensus       190 --~~~~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~---  244 (301)
                        ..+....                 ...+..+.+++||+++|    ++....+.|.+||+..   .+.+..+....   
T Consensus       294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY----VSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~  369 (462)
T 2ece_A          294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLY----LSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH  369 (462)
T ss_dssp             EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEE----EEETTTTEEEEEECSSTTSCEEEEEEECBTTTT
T ss_pred             EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEE----EEeCCCCEEEEEEecCCCCcEEEEEEEeCCeec
Confidence              1110000                 13468899999999753    4455568999999852   34444443321   


Q ss_pred             -----------CCcEEEEEcCCCCEEEEee
Q 022184          245 -----------KPASVLSISLDGKYLAMGS  263 (301)
Q Consensus       245 -----------~~v~~~~~s~~~~~l~~~~  263 (301)
                                 .....++++|||++|+++.
T Consensus       370 ~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          370 RADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             cccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence                       1368899999999999998

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.38  E-value=1e-09  Score=85.18  Aligned_cols=221  Identities=8%  Similarity=-0.045  Sum_probs=141.2

Q ss_pred             CcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEEEeC
Q 022184           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHW  141 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~  141 (301)
                      ..+..++|++++..|+.+. .++.|..++..+.... ....      ........++++|++..|+.+ ...+.|.++++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~------~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~  108 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIR------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEEC------TTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EEEE------CCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence            4578999999777666554 4678999998765431 1110      112467899999976666555 45678999998


Q ss_pred             CCcceecccccCCccEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      +.................++++|++..|+.+..   .+.|..+++.... ...+..........++++|++..+|    +
T Consensus       109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~ly----v  183 (267)
T 1npe_A          109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLC----W  183 (267)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEE----E
T ss_pred             CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEE----E
Confidence            643322112222246789999997665554443   3678888876433 2333222223578999999887643    4


Q ss_pred             EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCceeeccccccccCccEEEEEEc
Q 022184          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~s  297 (301)
                      +....+.|.++|............ ......++..  +..|+.+. ..+.|..+|..+++.+..+..+. ......+++.
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~  259 (267)
T 1npe_A          184 VDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIA  259 (267)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEE
T ss_pred             EECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeec
Confidence            556678999999976543333332 2344566654  44555554 56899999999998887764332 2347788999


Q ss_pred             cCC
Q 022184          298 PTQ  300 (301)
Q Consensus       298 pdg  300 (301)
                      ||+
T Consensus       260 ~~~  262 (267)
T 1npe_A          260 LSQ  262 (267)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            886

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.37  E-value=1.8e-10  Score=101.22  Aligned_cols=216  Identities=10%  Similarity=0.081  Sum_probs=138.0

Q ss_pred             CCcEEEEEEcCCccccccccccCCCC------------------------CCCCCeeEEEEeeCCCEEEEeecCCe----
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPL------------------------QDAGPQKCLSFSVDGSRFAAGGVDGH----  135 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~s~~~~~l~~~~~dg~----  135 (301)
                      ++.|+.||.++++...+.........                        .+......++++|+..+++++..++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            68899999988887554432100000                        01111235788998889998887763    


Q ss_pred             ---------------EEEEeCCCcceecccccCC---------ccEEEEEecCCCc---EEEEEeCCCcEEEEeCCCCce
Q 022184          136 ---------------LRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDSE---FLATTSTDGSARIWKTEDGVA  188 (301)
Q Consensus       136 ---------------i~v~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~  188 (301)
                                     |..+|.++|+.+..+....         .++.......+|+   .++.++.+|.++++|.++|+.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           9999999999876654321         1222222333565   788999999999999999998


Q ss_pred             EEEEeecCCC--------------------------------------CeeEEEEccCCCcceEEEEE------------
Q 022184          189 WTFLTRNSDE--------------------------------------KIELCRFSKDGTKPFLFCTV------------  218 (301)
Q Consensus       189 ~~~~~~~~~~--------------------------------------~v~~~~~~~~~~~~~~~~~~------------  218 (301)
                      +.........                                      .-..++|+|+...+|+...-            
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            7544321100                                      01126788887753321100            


Q ss_pred             ----------Ee------------------CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEE
Q 022184          219 ----------QR------------------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV  270 (301)
Q Consensus       219 ----------~~------------------~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i  270 (301)
                                .+                  ..++.|..||+.+++.+-....+. +...-.+...+.++++++.||.|+.
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a  500 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIA  500 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEE
Confidence                      00                  014889999999999876665443 2333356667889999999999999


Q ss_pred             EeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ||.++++++..+...+ .....-+.|..||+
T Consensus       501 ~D~~tG~~lw~~~~~~-~~~~~p~ty~~~G~  530 (689)
T 1yiq_A          501 YAADTGEKLWEQPAAS-GVMAAPVTYSVDGE  530 (689)
T ss_dssp             EETTTCCEEEEEECSS-CCCSCCEEEEETTE
T ss_pred             EECCCCccceeeeCCC-CcccCceEEEECCE
Confidence            9999999987764433 32233455666664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.33  E-value=1.2e-11  Score=103.89  Aligned_cols=195  Identities=9%  Similarity=0.062  Sum_probs=138.2

Q ss_pred             eEEEECC-----CCCeEEEEec-CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEE-e-eCCCEEEEee-------
Q 022184           67 MTIAVNP-----SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-S-VDGSRFAAGG-------  131 (301)
Q Consensus        67 ~~~~~~~-----~~~~l~~~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~-------  131 (301)
                      .....|.     ||+++..... +++|.+.|+++.+....+.      +.....+..+++ + |+++++++++       
T Consensus        88 hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~------ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~  161 (595)
T 1fwx_A           88 HHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILE------IPNAKGIHGLRPQKWPRSNYVFCNGEDETPLV  161 (595)
T ss_dssp             CCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE------CSSCCSEEEEEECCSSBCSEEEEEECSCEESS
T ss_pred             CccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEe------CCCCCCCcceeeeecCCCcEEEEecccccccC
Confidence            3355555     7888877655 4679999999887533221      112245678887 5 8999988884       


Q ss_pred             -----------cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCC------------------------
Q 022184          132 -----------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG------------------------  176 (301)
Q Consensus       132 -----------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------------------------  176 (301)
                                 .++.+.+.|..+.+...++.-.. ....++++|+|+++++.+.+.                        
T Consensus       162 ~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~  240 (595)
T 1fwx_A          162 NDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  240 (595)
T ss_dssp             CSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             CCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence                       34689999999888777765433 456788999999988887543                        


Q ss_pred             --------------cEEEEeCCC--Cce-EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce----
Q 022184          177 --------------SARIWKTED--GVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----  235 (301)
Q Consensus       177 --------------~i~i~d~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----  235 (301)
                                    .|.+.|.++  ++. +..+....  ...++.++|||+++    ++++..+.+|.++|+.+.+    
T Consensus       241 ~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v----~V~~~~s~~VsVid~~~~~~~~~  314 (595)
T 1fwx_A          241 IEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHL----CVAGKLSPTVTVLDVTRFDAVFY  314 (595)
T ss_dssp             HHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEE----EEECTTSSBEEEEEGGGHHHHHH
T ss_pred             eeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCC--CceEEEEcCCCCEE----EEeCCCCCeEEEEECcccccccc
Confidence                          477888877  444 55555432  36789999999974    4677788999999998653    


Q ss_pred             --------EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          236 --------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       236 --------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                              ...... .......++|+|+|....+.-.|+.|.+||+.+
T Consensus       315 ~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          315 ENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             SCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence                    222222 235678899999994444556789999999977

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.32  E-value=5.5e-10  Score=85.42  Aligned_cols=196  Identities=8%  Similarity=-0.022  Sum_probs=133.2

Q ss_pred             cceEEEECCCCCeEEEEec--CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEEEeC
Q 022184           65 DPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHW  141 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~--d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~  141 (301)
                      ....+.|++++..+++.+.  ++.|+++|+.+++........      .......+++  +++.|+.+ ..++.+.++|.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~------~~~fgeGi~~--~g~~lyv~t~~~~~v~viD~   93 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD------DSYFGEGLTL--LNEKLYQVVWLKNIGFIYDR   93 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC------TTCCEEEEEE--ETTEEEEEETTCSEEEEEET
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC------CCcceEEEEE--eCCEEEEEEecCCEEEEEEC
Confidence            3579999998754444443  578999999988764443211      1111223444  45555544 45789999999


Q ss_pred             CCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC----CCeeEEEEccCCCcceEEEE
Q 022184          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~  217 (301)
                      .+.+.+.++......  ...+++|++.++++..+++|.++|..+.+.+..+.....    ..++.+.|. ++..     .
T Consensus        94 ~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l-----y  165 (266)
T 2iwa_A           94 RTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV-----W  165 (266)
T ss_dssp             TTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----E
T ss_pred             CCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE-----E
Confidence            998887776533111  234566888777777788999999999988888764321    135678888 6642     2


Q ss_pred             EEeCCcceEEEEEccCceEeeeeecc-------------CCCcEEEEEcCCCCEEEE-eeCCCcEEEEeCCCc
Q 022184          218 VQRGDKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLAM-GSKDGDICVVDVKKM  276 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~-~~~d~~i~i~~~~~~  276 (301)
                      +....++.|.+.|..+++.+..+...             ......++|+|+++.+++ +...+++...++...
T Consensus       166 vn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          166 ANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            44556789999999999987776532             135689999999865554 556788888887654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.29  E-value=1.1e-09  Score=83.78  Aligned_cols=178  Identities=10%  Similarity=0.048  Sum_probs=122.7

Q ss_pred             CeeEEEEeeCCCEEEEeec--CCeEEEEeCCCcceecccccCCc-cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 022184          114 PQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (301)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  190 (301)
                      ....+.|+|++.++++.+.  ++.|+++|+.+++.+..+.-... ....+++.. ++..++.-.++.+.++|..+.+.+.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEE
Confidence            3578999998754444432  58999999999998776543222 233555552 2344445578899999999999998


Q ss_pred             EEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-----CCcEEEEEcCCCCEEEEeeCC
Q 022184          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKD  265 (301)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d  265 (301)
                      .+.....   ....+++||+.+     +.+..++.|.++|..+.+.+..+....     ..++.+.|. +|+..+....+
T Consensus       101 ~i~~g~~---~g~glt~Dg~~l-----~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~  171 (266)
T 2iwa_A          101 NFTHQMK---DGWGLATDGKIL-----YGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT  171 (266)
T ss_dssp             EEECCSS---SCCEEEECSSSE-----EEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             EEECCCC---CeEEEEECCCEE-----EEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence            8865411   234467788873     334457899999999988776665432     246788888 77555555567


Q ss_pred             CcEEEEeCCCceeeccccccc-----------cCccEEEEEEccCCC
Q 022184          266 GDICVVDVKKMEINHWSKRLH-----------LGTSIALVEFCPTQR  301 (301)
Q Consensus       266 ~~i~i~~~~~~~~~~~~~~~~-----------~~~~v~~~~~spdg~  301 (301)
                      +.|.+.|..+++.+..+....           .....+.++|+|+|+
T Consensus       172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~  218 (266)
T 2iwa_A          172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK  218 (266)
T ss_dssp             SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT
T ss_pred             CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC
Confidence            899999999998877764210           013568999999974

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.27  E-value=6.3e-10  Score=97.54  Aligned_cols=215  Identities=10%  Similarity=0.069  Sum_probs=139.8

Q ss_pred             CCcEEEEEEcCCccccccccccCCC---------------C----------CCCCCeeEEEEeeCCCEEEEeecCC----
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPP---------------L----------QDAGPQKCLSFSVDGSRFAAGGVDG----  134 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~---------------~----------~~~~~v~~~~~s~~~~~l~~~~~dg----  134 (301)
                      ++.|+.+|.++++...+........               .          .+......++++|++..++.+..++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            6889999998888755443211110               0          1111224578899888888887654    


Q ss_pred             ---------------eEEEEeCCCcceecccccCC---------ccEEEEEecCCC---cEEEEEeCCCcEEEEeCCCCc
Q 022184          135 ---------------HLRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDS---EFLATTSTDGSARIWKTEDGV  187 (301)
Q Consensus       135 ---------------~i~v~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~  187 (301)
                                     .|..+|.++++.+..+....         ....-+....+|   ..++.++.+|.++++|.++++
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           59999999998876544311         112223334477   678999999999999999999


Q ss_pred             eEEEEeecCCC----------Ce------------------------eEEEEccCCCcceEEEEEE------------e-
Q 022184          188 AWTFLTRNSDE----------KI------------------------ELCRFSKDGTKPFLFCTVQ------------R-  220 (301)
Q Consensus       188 ~~~~~~~~~~~----------~v------------------------~~~~~~~~~~~~~~~~~~~------------~-  220 (301)
                      .+..+......          ++                        ..++++|++..+|+...-.            + 
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            88766532110          01                        1468888887643311100            0 


Q ss_pred             -------------------------CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          221 -------------------------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       221 -------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                                               ...+.|..||+.+++.+-.... ..++....+..++.++++++.||.+++||..+
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t  507 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT  507 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence                                     0137899999999998765543 33444555677788899999999999999999


Q ss_pred             ceeeccccccccCccEEEEEEccCC
Q 022184          276 MEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       276 ~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      ++.+..+...+ .....-+.|.++|
T Consensus       508 G~~lw~~~~~~-~~~~~p~~y~~~G  531 (677)
T 1kb0_A          508 GEKLWEAPTGT-GVVAAPSTYMVDG  531 (677)
T ss_dssp             CCEEEEEECSS-CCCSCCEEEEETT
T ss_pred             CceeeeeeCCC-CcccCCEEEEeCC
Confidence            99988775433 3223334445555

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.22  E-value=5.5e-10  Score=90.12  Aligned_cols=200  Identities=10%  Similarity=-0.148  Sum_probs=122.5

Q ss_pred             cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee----------cCCeEEEEeCCCcceecccccC--
Q 022184           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----------VDGHLRIMHWPSLRIILDEPKA--  153 (301)
Q Consensus        86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~--  153 (301)
                      +|.++|..+.+....+...       ..+  .+.++||+++++++.          .++.|.+||+.+++.+..+...  
T Consensus        47 ~vsvID~~t~~v~~~i~vG-------~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~  117 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGA-------FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             EEEEEETTTTEEEEEEEEC-------TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             eEEEEECCCCeEEEEEeCC-------CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence            7889999888764443321       223  799999999998886          3688999999999988776432  


Q ss_pred             -----CccEEEEEecCCCcEEEEEeC--CCcEEE--EeCCCCceEEEEeecCCC------CeeEEEEccCCCcceEEE--
Q 022184          154 -----HKSVLDMDFSLDSEFLATTST--DGSARI--WKTEDGVAWTFLTRNSDE------KIELCRFSKDGTKPFLFC--  216 (301)
Q Consensus       154 -----~~~i~~~~~~~~~~~l~~~~~--d~~i~i--~d~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~--  216 (301)
                           ......++++|||++++++..  +..+.+  +|+.+   +..+......      .-.-++++++++...+-.  
T Consensus       118 ~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcc
Confidence                 123567999999999988874  457888  99876   3333211000      000012222222100000  


Q ss_pred             ------------------------------EEEeCCcceEEEEEccCce--Eeeeeecc----------CCCcEEEEEcC
Q 022184          217 ------------------------------TVQRGDKALLAVYDISTWN--KIGHKRLL----------RKPASVLSISL  254 (301)
Q Consensus       217 ------------------------------~~~~~~~~~i~~~d~~~~~--~~~~~~~~----------~~~v~~~~~s~  254 (301)
                                                    ++..+. +.+.+.|..+..  .+..+...          ......++++|
T Consensus       195 ~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~  273 (368)
T 1mda_H          195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK  273 (368)
T ss_dssp             SCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred             ccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC
Confidence                                          111112 556666664321  12111110          01122278999


Q ss_pred             CCCEEEEeeC---------CCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          255 DGKYLAMGSK---------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       255 ~~~~l~~~~~---------d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |++.++++..         ++.+.++|+.+.+.+..+..+   .....++|+|||+
T Consensus       274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~  326 (368)
T 1mda_H          274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGA  326 (368)
T ss_dssp             TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSS
T ss_pred             CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCC
Confidence            9998887643         235779999999988887532   3688999999985

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.22  E-value=2.6e-09  Score=80.79  Aligned_cols=181  Identities=12%  Similarity=0.026  Sum_probs=124.8

Q ss_pred             ceEEEECCCCCeEEEEecCC--cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCC
Q 022184           66 PMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWP  142 (301)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~  142 (301)
                      ...+.|+ ++.++.+.+.+|  .|+.+|+++++.......        ..........++++.|.... .++.+.++|..
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--------~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--------GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--------CTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--------CCccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence            4789998 666666777765  899999998876444321        12333333444555665544 58999999999


Q ss_pred             CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-C---CCeeEEEEccCCCcceEEEEE
Q 022184          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-D---EKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      +.+.+.++....   ....+++|++.|+.+..++.|.++|..+.+.+..+.... +   ..++.+.|. +|+.     .+
T Consensus       116 t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l-----ya  186 (262)
T 3nol_A          116 NLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI-----FA  186 (262)
T ss_dssp             TCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE-----EE
T ss_pred             cCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE-----EE
Confidence            999887775433   223344577877777767889999999999888876432 1   224557776 6642     24


Q ss_pred             EeCCcceEEEEEccCceEeeeeecc------------CCCcEEEEEcCCCCEEEEeeC
Q 022184          219 QRGDKALLAVYDISTWNKIGHKRLL------------RKPASVLSISLDGKYLAMGSK  264 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~  264 (301)
                      ..-.+..|.+.|.++++.+..+...            ..-.+.++|+|+++.|++.+.
T Consensus       187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            4556789999999999987666542            134688999999877777765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.21  E-value=4.5e-09  Score=79.52  Aligned_cols=175  Identities=10%  Similarity=0.109  Sum_probs=120.5

Q ss_pred             eeEEEEeeCCCEEEEeecCC--eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEE-EeCCCcEEEEeCCCCceEEE
Q 022184          115 QKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDGSARIWKTEDGVAWTF  191 (301)
Q Consensus       115 v~~~~~s~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~  191 (301)
                      ...+.|+ ++.++.+.+.+|  .|+++|+++++.+.+..-. .........++++.|.. .-.++.+.+||.++.+.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4788998 676666666655  8999999999987766433 23333223333444444 44688999999999999999


Q ss_pred             EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-----CCcEEEEEcCCCCEEEEeeCCC
Q 022184          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKDG  266 (301)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d~  266 (301)
                      +.....    ...++++++.     ++.+..++.|.++|..+.+.+..+....     ..++.+.|. +|+..+..-.++
T Consensus       123 i~~~~e----G~glt~dg~~-----L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~  192 (262)
T 3nol_A          123 FNYDGE----GWGLTHNDQY-----LIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTN  192 (262)
T ss_dssp             EECSSC----CCCEEECSSC-----EEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             EECCCC----ceEEecCCCE-----EEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCC
Confidence            875432    2344467776     3444457889999999988877665432     335567886 776555555678


Q ss_pred             cEEEEeCCCceeecccccc----------ccCccEEEEEEccCCC
Q 022184          267 DICVVDVKKMEINHWSKRL----------HLGTSIALVEFCPTQR  301 (301)
Q Consensus       267 ~i~i~~~~~~~~~~~~~~~----------~~~~~v~~~~~spdg~  301 (301)
                      .|.+.|.++++.+..+...          ......+.+||+|+++
T Consensus       193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~  237 (262)
T 3nol_A          193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH  237 (262)
T ss_dssp             EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred             eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence            9999999999987765321          0023568999999864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.18  E-value=1.2e-08  Score=77.16  Aligned_cols=174  Identities=14%  Similarity=0.080  Sum_probs=120.5

Q ss_pred             CeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccE--EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 022184          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV--LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (301)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  191 (301)
                      -...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ - ....  ..+++.. ++..+..-.++.+.+||.++.+.+.+
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence            34688887 4556667777889999999999987766 2 2233  3355542 23444445789999999999999999


Q ss_pred             EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-----CCcEEEEEcCCCCEEEEeeCCC
Q 022184          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKDG  266 (301)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d~  266 (301)
                      +.....  -..+  +++++.     ++.+..++.|.++|..+.+.+..+....     ..++.+.|. +|+..+..-.++
T Consensus       132 i~~~~e--GwGL--t~Dg~~-----L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~  201 (268)
T 3nok_A          132 TRYSGE--GWGL--CYWNGK-----LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS  201 (268)
T ss_dssp             EECSSC--CCCE--EEETTE-----EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred             EeCCCc--eeEE--ecCCCE-----EEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence            875432  2333  467776     3444458899999999988877665432     245677877 776555555678


Q ss_pred             cEEEEeCCCceeecccccc-----------ccCccEEEEEEccCCC
Q 022184          267 DICVVDVKKMEINHWSKRL-----------HLGTSIALVEFCPTQR  301 (301)
Q Consensus       267 ~i~i~~~~~~~~~~~~~~~-----------~~~~~v~~~~~spdg~  301 (301)
                      .|.+.|.++++.+..+...           ......+.+||+|+++
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~  247 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG  247 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC
Confidence            9999999999887665321           0124678999999864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.15  E-value=4.2e-10  Score=94.69  Aligned_cols=198  Identities=9%  Similarity=0.013  Sum_probs=130.4

Q ss_pred             CcceEEEE-C-CCCCeEEEEe------------------cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC
Q 022184           64 GDPMTIAV-N-PSGDDFVCST------------------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD  123 (301)
Q Consensus        64 ~~v~~~~~-~-~~~~~l~~~~------------------~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  123 (301)
                      ..+..+++ + |+++++++++                  .++.+.+.|.++.+...++...        +....++++|+
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg--------g~pd~~~~spd  205 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--------GNLDNCDADYE  205 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES--------SCCCCEEECSS
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeC--------CCccceEECCC
Confidence            35778887 5 8999998884                  2357888888876553333211        12355788999


Q ss_pred             CCEEEEeecCC--------------------------------------eEEEEeCCC--cce-ecccccCCccEEEEEe
Q 022184          124 GSRFAAGGVDG--------------------------------------HLRIMHWPS--LRI-ILDEPKAHKSVLDMDF  162 (301)
Q Consensus       124 ~~~l~~~~~dg--------------------------------------~i~v~d~~~--~~~-~~~~~~~~~~i~~~~~  162 (301)
                      |+++++.+.+.                                      .|.|.|..+  ++. +..+.. .....++.+
T Consensus       206 Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~  284 (595)
T 1fwx_A          206 GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNM  284 (595)
T ss_dssp             SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEE
T ss_pred             CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEE
Confidence            99988877543                                      355666655  322 222222 234568999


Q ss_pred             cCCCcEEEEEe-CCCcEEEEeCCCCc------------eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184          163 SLDSEFLATTS-TDGSARIWKTEDGV------------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (301)
Q Consensus       163 ~~~~~~l~~~~-~d~~i~i~d~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (301)
                      +|||+++++++ .+.+|.++|+.+.+            ......  .+.....++|+|+| +.    .++..-+++|.+|
T Consensus       285 sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG-~a----Y~t~~ldsqV~kw  357 (595)
T 1fwx_A          285 APDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDGRG-NA----YTSLFLDSQVVKW  357 (595)
T ss_dssp             CTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECTTS-EE----EEEETTTTEEEEE
T ss_pred             cCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CCCCcceEEECCCC-eE----EEEEecCCcEEEE
Confidence            99999877665 67899999998653            233333  33458899999999 53    3556778999999


Q ss_pred             EccC----------ceEeeeeeccCCCc-----EEEEEcCCCCEEEEeeC---CCc----------EEEEeCCCce
Q 022184          230 DIST----------WNKIGHKRLLRKPA-----SVLSISLDGKYLAMGSK---DGD----------ICVVDVKKME  277 (301)
Q Consensus       230 d~~~----------~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~---d~~----------i~i~~~~~~~  277 (301)
                      |+.+          .+.+..+..+..+-     ..+.++|||++|++...   |+.          -.++|+..++
T Consensus       358 di~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          358 NIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             EhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            9987          44555555543321     12345899999999853   332          2889996544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.12  E-value=5.5e-08  Score=72.95  Aligned_cols=177  Identities=11%  Similarity=0.100  Sum_probs=119.7

Q ss_pred             CCeeEEEEeeCCCEEEEeecC--CeEEEEeCCCcceecccccCCcc-EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 022184          113 GPQKCLSFSVDGSRFAAGGVD--GHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  189 (301)
                      .-...+.|++ +.++.+.+.+  ..|+.+|+.+++.+....-.... -..++.. .++.....-.++.+.+||.++.+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEE
Confidence            4467899986 5555555554  48999999999987766433221 1234443 2344444557899999999999999


Q ss_pred             EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-----CCcEEEEEcCCCCEEEEeeC
Q 022184          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK  264 (301)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~  264 (301)
                      .++.....  -..  +.+++..     ++.+..++.|.++|..+.+.+..+....     ..++.+.|. +|+..+..-.
T Consensus        99 ~ti~~~~~--Gwg--lt~dg~~-----L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~  168 (243)
T 3mbr_X           99 ARFRYPGE--GWA--LTSDDSH-----LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL  168 (243)
T ss_dssp             EEEECSSC--CCE--EEECSSC-----EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             EEEeCCCC--ceE--EeeCCCE-----EEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence            99875432  233  4467776     3444458899999999988877665432     345667776 6665555546


Q ss_pred             CCcEEEEeCCCceeecccccc-----------ccCccEEEEEEccCCC
Q 022184          265 DGDICVVDVKKMEINHWSKRL-----------HLGTSIALVEFCPTQR  301 (301)
Q Consensus       265 d~~i~i~~~~~~~~~~~~~~~-----------~~~~~v~~~~~spdg~  301 (301)
                      +..|.+.|..+++.+..+...           ......+.+|++|+++
T Consensus       169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~  216 (243)
T 3mbr_X          169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD  216 (243)
T ss_dssp             TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred             CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence            789999999999887765311           1124678999999764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.08  E-value=1e-07  Score=75.36  Aligned_cols=219  Identities=11%  Similarity=0.004  Sum_probs=132.5

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC--CeEEEEeC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMHW  141 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~v~d~  141 (301)
                      .....++|+++++.+++-..++.|..||.++...  ...       .....+..++++++|+++++....  ..|..+|.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~--~~~-------~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IHA-------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EEE-------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE--EEE-------eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence            4578899999998666655778888888654321  111       112457899999999865554332  24667777


Q ss_pred             CCcceecccc-cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-EEEEee--------cCCCCeeEEEEccCCCc
Q 022184          142 PSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTR--------NSDEKIELCRFSKDGTK  211 (301)
Q Consensus       142 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~--------~~~~~v~~~~~~~~~~~  211 (301)
                      .+++...... ........++..+++..+++-..++.|..+|...++. +.....        ..-.....+  +|+++.
T Consensus       103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            7766432111 1112334555555555555555678899999876432 211110        011124455  888876


Q ss_pred             ceEEEEEEeCCcceEEEEEccC-ceE--eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeec--cccccc
Q 022184          212 PFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSKRLH  286 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~-~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~--~~~~~~  286 (301)
                      +    .++....+.|..||+.. ++.  ...+.. ......++++++|+++++....+.|.+++.. ++...  .+. ..
T Consensus       181 l----yv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-~~  253 (306)
T 2p4o_A          181 L----YVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QG  253 (306)
T ss_dssp             E----EEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GT
T ss_pred             E----EEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-cc
Confidence            3    35556678999999874 321  111111 1345778999999887777777899999976 54422  221 12


Q ss_pred             cCccEEEEEEc---cCCC
Q 022184          287 LGTSIALVEFC---PTQR  301 (301)
Q Consensus       287 ~~~~v~~~~~s---pdg~  301 (301)
                       ....++++|.   ||++
T Consensus       254 -~~~p~~~a~~g~~~d~~  270 (306)
T 2p4o_A          254 -VIGSTAVAFGQTEGDCT  270 (306)
T ss_dssp             -CTTEEEEEECCSTTTTT
T ss_pred             -cCCceEEEEecccCCCC
Confidence             3568899998   7763

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.07  E-value=8.7e-08  Score=84.09  Aligned_cols=203  Identities=13%  Similarity=0.111  Sum_probs=134.8

Q ss_pred             ceEEEECCCCCeEEEEecCC-------------------cEEEEEEcCCccccccccccCC--CCCCCCCeeEEEEeeCC
Q 022184           66 PMTIAVNPSGDDFVCSTTNG-------------------GCKLFEVYGGATDINLLAKKMP--PLQDAGPQKCLSFSVDG  124 (301)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~-------------------~i~~w~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~  124 (301)
                      ...++++|++..++.+..++                   .|..+|.++++...........  ..........+....+|
T Consensus       245 w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          245 WDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             ccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            34688899888888876653                   4888888888775554322110  01111223334444577


Q ss_pred             ---CEEEEeecCCeEEEEeCCCcceecccccCC-----------ccE------------------------EEEEecCCC
Q 022184          125 ---SRFAAGGVDGHLRIMHWPSLRIILDEPKAH-----------KSV------------------------LDMDFSLDS  166 (301)
Q Consensus       125 ---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----------~~i------------------------~~~~~~~~~  166 (301)
                         ..++.++.+|.++++|..+++.+.......           .++                        ..++++|+.
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~  404 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT  404 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence               678999999999999999998765443111           011                        146888988


Q ss_pred             cEEEEEeC-------------------------------------------CCcEEEEeCCCCceEEEEeecCCCCeeEE
Q 022184          167 EFLATTST-------------------------------------------DGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (301)
Q Consensus       167 ~~l~~~~~-------------------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~  203 (301)
                      .++++...                                           .+.|..||+.+++.+-.+....  ++...
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~g  482 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS--PWNGG  482 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS--SCCCC
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC--CCcCc
Confidence            87776543                                           1779999999999887776432  34455


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-CCcEEEEEcCCCCE-EEEeeC----------------C
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKY-LAMGSK----------------D  265 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~-l~~~~~----------------d  265 (301)
                      .+..++..     ++.++.++.+++||.++++.+..+.... ....-+.|.++|+. +++.+.                .
T Consensus       483 ~~~~~g~~-----v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~  557 (677)
T 1kb0_A          483 TLTTAGNV-----VFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGP  557 (677)
T ss_dssp             EEEETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCC
T ss_pred             ceEeCCCE-----EEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCC
Confidence            56677775     4567889999999999999987776543 23344667788864 444222                3


Q ss_pred             CcEEEEeCCC
Q 022184          266 GDICVVDVKK  275 (301)
Q Consensus       266 ~~i~i~~~~~  275 (301)
                      +.+..|.+..
T Consensus       558 ~~l~~f~l~~  567 (677)
T 1kb0_A          558 GTVYTFVVGG  567 (677)
T ss_dssp             CEEEEEEETC
T ss_pred             CeEEEEeccc
Confidence            5777887763

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.07  E-value=9.9e-12  Score=101.17  Aligned_cols=147  Identities=18%  Similarity=0.121  Sum_probs=82.4

Q ss_pred             CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCee-
Q 022184          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE-  201 (301)
Q Consensus       123 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~-  201 (301)
                      ++..+++++.|+.|+.||..+|+.+.++..  +++.+..+.+++..+++++.|+.|+.||.++++.+..+..+....+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577899999999999999999998776654  44545455567778888889999999999988876555322111110 


Q ss_pred             EEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecc
Q 022184          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (301)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~  281 (301)
                      ...+..++ .     ++.++.++.|..||.++++.+..+..+.    ...++|++..+++++.|+.|+.||.++++.+..
T Consensus        86 sp~~~~~~-~-----v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           86 SPCRSSDG-I-----LYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             CSCC-----------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             CceEecCC-E-----EEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence            01111233 3     3556778999999999998876554432    235567888999999999999999999876544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.06  E-value=8.1e-08  Score=76.56  Aligned_cols=211  Identities=11%  Similarity=0.006  Sum_probs=128.5

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCC------------CCCCCCCeeEEEEee-CCCEEEE
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP------------PLQDAGPQKCLSFSV-DGSRFAA  129 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~~~s~-~~~~l~~  129 (301)
                      -....+++|+++++.+.++..++.|..|+..++............            .......+..+++.+ +++ |++
T Consensus        18 ~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           18 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             SSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             cCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            345778999999987888888888999987654331100000000            000113578899998 554 555


Q ss_pred             eecCCeEEEEeCCCcceec--cccc--CCccEEEEEecC-CCcEEEEEeC-----------------CCcEEEEeCCCCc
Q 022184          130 GGVDGHLRIMHWPSLRIIL--DEPK--AHKSVLDMDFSL-DSEFLATTST-----------------DGSARIWKTEDGV  187 (301)
Q Consensus       130 ~~~dg~i~v~d~~~~~~~~--~~~~--~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~i~i~d~~~~~  187 (301)
                      +...+.|..+|..+++...  ....  .......+++.| +|+..++-..                 ++.|..+|..+++
T Consensus        97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            5545558888877554211  1111  112468899999 9987666432                 3678888887666


Q ss_pred             eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce--EeeeeeccCCCcEEEEEcCCCCEEEEeeC-
Q 022184          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSK-  264 (301)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  264 (301)
                      ........  .....++++|+++.++    ++....+.|..|++....  ....+..... ...++++++|++.++... 
T Consensus       177 ~~~~~~~~--~~p~gia~~~dg~~ly----v~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~  249 (322)
T 2fp8_A          177 TTLLLKEL--HVPGGAEVSADSSFVL----VAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEE  249 (322)
T ss_dssp             EEEEEEEE--SCCCEEEECTTSSEEE----EEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEE
T ss_pred             EEEeccCC--ccCcceEECCCCCEEE----EEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCc
Confidence            43332221  2357899999998632    344556889999987421  1111111223 788999999986666544 


Q ss_pred             ---------CCcEEEEeCCCceeeccc
Q 022184          265 ---------DGDICVVDVKKMEINHWS  282 (301)
Q Consensus       265 ---------d~~i~i~~~~~~~~~~~~  282 (301)
                               .+.|..+|.. ++.+..+
T Consensus       250 ~~~~~~~~~~~~v~~~d~~-G~~~~~~  275 (322)
T 2fp8_A          250 LDGNMHGRVDPKGIKFDEF-GNILEVI  275 (322)
T ss_dssp             TTSSTTSCEEEEEEEECTT-SCEEEEE
T ss_pred             ccccccCCCccEEEEECCC-CCEEEEE
Confidence                     4678888874 5554443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.05  E-value=8.4e-08  Score=71.98  Aligned_cols=183  Identities=8%  Similarity=-0.024  Sum_probs=121.5

Q ss_pred             CcceEEEECCCCCeEEEEecC--CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEE-EeecCCeEEEEe
Q 022184           64 GDPMTIAVNPSGDDFVCSTTN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMH  140 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d--~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~v~d  140 (301)
                      .-...+.|++ +..+.+.+.+  ..|+.+|+++++.......        ..........+.++.|. ....++.+.+||
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l--------~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D   91 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV--------PPPYFGAGIVAWRDRLIQLTWRNHEGFVYD   91 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC--------CTTCCEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC--------CCCcceeEEEEeCCEEEEEEeeCCEEEEEE
Confidence            3466899986 5555566654  4899999999876443321        12233333344445554 445689999999


Q ss_pred             CCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC----CCeeEEEEccCCCcceEEE
Q 022184          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFC  216 (301)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~  216 (301)
                      ..+.+.+.++...... ..++  ++++.|+.+..++.|.++|..+.+.+..+.....    ..++.+.|. +|+.     
T Consensus        92 ~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l-----  162 (243)
T 3mbr_X           92 LATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL-----  162 (243)
T ss_dssp             TTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----
T ss_pred             CCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE-----
Confidence            9999988777644322 3444  5677777777788999999999998888764321    134556665 5542     


Q ss_pred             EEEeCCcceEEEEEccCceEeeeeecc-------------CCCcEEEEEcCCCCEEEEeeC
Q 022184          217 TVQRGDKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLAMGSK  264 (301)
Q Consensus       217 ~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~  264 (301)
                      .+..-.+..|.+.|.++++.+..+...             ..-.+.++++|+++.|++.+.
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            244445779999999999987665422             135688999998776666654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.05  E-value=7.1e-07  Score=69.04  Aligned_cols=178  Identities=10%  Similarity=-0.014  Sum_probs=112.7

Q ss_pred             CcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec---CCeEEEE
Q 022184           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIM  139 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~v~  139 (301)
                      ..+..+++++++..|+.+. ..+.|.+++++..... .+..      ........++++|++..|+.+..   .+.|..+
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~  151 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFD------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEC------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEEE------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence            4678999999766666554 4578999887654321 1110      01245689999997666655553   3688888


Q ss_pred             eCCCcceecccc-cCCccEEEEEecCCCcEEEEE-eCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE
Q 022184          140 HWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       140 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (301)
                      ++..... ..+. ........++++|++..|+.+ ...+.|.++|+........+. . ......++..  +..+    .
T Consensus       152 ~~dg~~~-~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~-~~~P~gi~~d--~~~l----y  222 (267)
T 1npe_A          152 HMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-G-LQYPFAVTSY--GKNL----Y  222 (267)
T ss_dssp             ETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-C-CCSEEEEEEE--TTEE----E
T ss_pred             ecCCCCc-EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-C-CCCceEEEEe--CCEE----E
Confidence            8754322 2221 222457899999987655544 456789999997654333333 2 2234566653  4442    3


Q ss_pred             EEeCCcceEEEEEccCceEeeeeeccC-CCcEEEEEcCCCC
Q 022184          218 VQRGDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGK  257 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~  257 (301)
                      ++....+.|..+|..+++.+..+.... .....+++.|++.
T Consensus       223 va~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          223 YTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            455567899999999988877765443 2467788888764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.05  E-value=9.4e-09  Score=82.10  Aligned_cols=200  Identities=13%  Similarity=-0.001  Sum_probs=127.1

Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  154 (301)
                      +..+..++.++.+..+|.+ ++.......       ....+.++...+++. +..++.++.|..+|.. ++.........
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKT-------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEEC-------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcC-------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC
Confidence            4567777778889888876 443222111       122344556666666 6667778999999988 76655554444


Q ss_pred             ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  234 (301)
                      ..+.++...+++..++..   +.+..+| .+++......... ..+.++...++|.      +..++.++.|..+|. ++
T Consensus       177 ~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~-~~~~~~~~~~~g~------l~v~t~~~gl~~~~~-~g  244 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGY-WTVTRPAISEDGT------IYVTSLDGHLYAINP-DG  244 (330)
T ss_dssp             CCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSS-CCCSCCEECTTSC------EEEEETTTEEEEECT-TS
T ss_pred             CceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCC-cceeceEECCCCe------EEEEcCCCeEEEECC-CC
Confidence            556677777777755444   8899999 7777666655332 3578888888887      455666778888885 45


Q ss_pred             eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      +.+.........+..+...+++ .|.+++.+|.|..+|. +++...... .. ...+.++...++|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~-~~-~~~~~~~~~d~~g  306 (330)
T 3hxj_A          245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE-TG-SWIIATPVIDENG  306 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE-CS-SCCCSCCEECTTC
T ss_pred             CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE-cC-CccccceEEcCCC
Confidence            5554444444444556666666 4667777888999996 565544432 22 3445555555554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.03  E-value=4.7e-08  Score=74.00  Aligned_cols=180  Identities=10%  Similarity=-0.016  Sum_probs=122.0

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEE-EEeecCCeEEEEeCCCc
Q 022184           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSL  144 (301)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~v~d~~~~  144 (301)
                      ...+.|+ ++.++.+.+.+|.|+++|+++++..... ..        .........++++.| .....++.+.+||..+.
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--------~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL--------GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC--------TTCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC--------CCcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence            4688887 3556667778889999999998875444 11        122222233444444 44456899999999999


Q ss_pred             ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC----CCeeEEEEccCCCcceEEEEEEe
Q 022184          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      +.+.++.... .-..++  +|++.|+.+..++.|.++|..+.+.+..+.....    ..++.+.|. +|+.     .+..
T Consensus       127 ~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l-----yanv  197 (268)
T 3nok_A          127 QRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI-----YANI  197 (268)
T ss_dssp             EEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EEEE
T ss_pred             cEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE-----EEEE
Confidence            9887776432 223444  5678777777789999999999998888764321    134667777 6642     2444


Q ss_pred             CCcceEEEEEccCceEeeeeecc-------------CCCcEEEEEcCCCCEEEEeeC
Q 022184          221 GDKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLAMGSK  264 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~  264 (301)
                      -.+..|.+.|.++++.+..+...             ..-.+.++++|+++.|++.+.
T Consensus       198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            56779999999999887655432             135688999998765555543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.02  E-value=8.1e-08  Score=76.63  Aligned_cols=190  Identities=13%  Similarity=0.043  Sum_probs=124.3

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      ...+.++...+++. +..++.++.|..+|.. ++.......       ....+.++...+++.+++ ++  +.|..+| .
T Consensus       136 ~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~-------~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~  202 (330)
T 3hxj_A          136 KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT-------NDAITSAASIGKDGTIYF-GS--DKVYAIN-P  202 (330)
T ss_dssp             SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC-------SSCCCSCCEECTTCCEEE-ES--SSEEEEC-T
T ss_pred             CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec-------CCCceeeeEEcCCCEEEE-Ee--CEEEEEC-C
Confidence            34466677777776 5566777889999987 443222211       123455566667776544 44  7799999 7


Q ss_pred             CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCC
Q 022184          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (301)
                      +++...........+.++...+++. |..++.++.+..+|. +++.+..+.... ..+..+...+++.      +..++.
T Consensus       203 ~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~-~~~~~~~~~~~g~------l~v~t~  273 (330)
T 3hxj_A          203 DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGK-RIESSPVIGNTDT------IYFGSY  273 (330)
T ss_dssp             TSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSS-CCCSCCEECTTSC------EEEECT
T ss_pred             CCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCC-CccccceEcCCCe------EEEecC
Confidence            7766655554445677888888775 555666788888874 566655554332 2345566666776      567778


Q ss_pred             cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (301)
Q Consensus       223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~  276 (301)
                      ++.|..+|. +++.+.........+.++..+++++ |..++.+|.+++...+..
T Consensus       274 ~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          274 DGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             TCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             CCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence            888999996 5666655555556677777878876 566888999998887543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.00  E-value=1.4e-06  Score=70.11  Aligned_cols=206  Identities=3%  Similarity=-0.079  Sum_probs=126.1

Q ss_pred             CcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEE-EEeecCCeEEEEeC
Q 022184           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHW  141 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~v~d~  141 (301)
                      ..+..++|++....|..+. ..+.|+.+++.+..... +..      ........+++.+.+..| ++-...+.|.+.++
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~~------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~  145 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VVS------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL  145 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EEC------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-EEe------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence            3478999998766666554 46778888877654211 110      112345788998855555 44455688999998


Q ss_pred             CCcceecccccCCccEEEEEecCCCcEEEEE-eCC-CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEE
Q 022184          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                      +.................++++|.+..|+.. ... +.|..+++..... ..+....-.....++++|++..+|    ++
T Consensus       146 dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY----~a  220 (349)
T 3v64_C          146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMY----WV  220 (349)
T ss_dssp             TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEE----EE
T ss_pred             CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEE----EE
Confidence            6543322222233567899999965554444 444 7788888765433 222222233578999999887643    44


Q ss_pred             eCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       220 ~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      -...+.|..+|+..................+++. ++.++++-...+.|..++..+++....+
T Consensus       221 D~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          221 DAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             ECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            5567899999987543222222223456778883 4444555556678888886666554444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.00  E-value=2.1e-07  Score=81.84  Aligned_cols=189  Identities=12%  Similarity=0.128  Sum_probs=124.7

Q ss_pred             eEEEECCCCCeEEEEecCCc-------------------EEEEEEcCCccccccccccCC--CCCCCCCeeEEEEeeCCC
Q 022184           67 MTIAVNPSGDDFVCSTTNGG-------------------CKLFEVYGGATDINLLAKKMP--PLQDAGPQKCLSFSVDGS  125 (301)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~-------------------i~~w~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~  125 (301)
                      ..++++|++..++.+..++.                   |..+|.++++...........  ......+........+|+
T Consensus       238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            46888998888888877753                   999999988876554322111  111122222333334665


Q ss_pred             ---EEEEeecCCeEEEEeCCCcceecccccCC----------------------------c-----------cEEEEEec
Q 022184          126 ---RFAAGGVDGHLRIMHWPSLRIILDEPKAH----------------------------K-----------SVLDMDFS  163 (301)
Q Consensus       126 ---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----------------------------~-----------~i~~~~~~  163 (301)
                         .++.++.+|.++++|.++|+.+.......                            .           .-..++++
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               78899999999999999998763211100                            0           01136788


Q ss_pred             CCCcEEEEEeC---------------------------------------------CCcEEEEeCCCCceEEEEeecCCC
Q 022184          164 LDSEFLATTST---------------------------------------------DGSARIWKTEDGVAWTFLTRNSDE  198 (301)
Q Consensus       164 ~~~~~l~~~~~---------------------------------------------d~~i~i~d~~~~~~~~~~~~~~~~  198 (301)
                      |+..++++...                                             +|.|+.||+++++.+-.+..+.. 
T Consensus       398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-  476 (689)
T 1yiq_A          398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-  476 (689)
T ss_dssp             TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-
T ss_pred             CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-
Confidence            88777766522                                             37799999999998877765432 


Q ss_pred             CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCC-CcEEEEEcCCCC-EEEEe
Q 022184          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGK-YLAMG  262 (301)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l~~~  262 (301)
                       ...-.+...+..     ++.++.|+.|+.||.++++.+-.+..... ...-+.|..+|+ |+++.
T Consensus       477 -~~~g~~~taggl-----vf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          477 -FNGGTLSTAGNL-----VFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             -CCCCEEEETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             -ccCccceECCCE-----EEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence             333456666665     56678999999999999999877765432 234467778886 44443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.98  E-value=1.3e-06  Score=71.40  Aligned_cols=207  Identities=3%  Similarity=-0.094  Sum_probs=127.2

Q ss_pred             CCcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEE-EEeecCCeEEEEe
Q 022184           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMH  140 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~v~d  140 (301)
                      ...+..++|++.+..|+.+. ..+.|+.+++++...... ..      ........+++.+.+..| ++-...+.|.+.+
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-~~------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~  187 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-VS------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN  187 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE-EC------SSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE-Ee------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence            34578999998666666554 457788888776542111 11      111234678888855555 4445567899988


Q ss_pred             CCCcceecccccCCccEEEEEecCCCcEEEEEe-CC-CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      +..................++++|.+..|+... .. +.|..+++.......... ..-.....++++|++..+|    +
T Consensus       188 ~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~lY----~  262 (386)
T 3v65_B          188 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMY----W  262 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEEGGGTEEE----E
T ss_pred             CCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCeeeEEEeCCCCEEE----E
Confidence            865433222223335678999999766555444 34 678888886544333332 2233478999999887643    4


Q ss_pred             EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      +-...+.|..+|+..................+++. .+.++++-...+.|..++..+++....+
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          263 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             EETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            45667899999987543322222233456778883 4445555556788999997666655444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.97  E-value=1.2e-07  Score=84.34  Aligned_cols=199  Identities=11%  Similarity=0.012  Sum_probs=113.8

Q ss_pred             ccCC-cceEEEEC-CCCCeEEEEec-CC----cEEEEEEcCC-ccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec
Q 022184           61 ESEG-DPMTIAVN-PSGDDFVCSTT-NG----GCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (301)
Q Consensus        61 ~h~~-~v~~~~~~-~~~~~l~~~~~-d~----~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (301)
                      +|.- .+...+|| |||++||.+.. +|    +|+++|+.++ +....       .+  ......++|+|||+.|+....
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~--~~~~~~~~WspDg~~l~y~~~  240 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KV--SGTNGEIVWGPDHTSLFYVTK  240 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CE--EEECSCCEECSSTTEEEEEEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------cc--cCceeeEEEecCCCEEEEEEE
Confidence            3443 67889999 99998886543 33    4999999887 52111       01  011346899999998887766


Q ss_pred             C-----CeEEEEeCCCccee--cccc-cCCccEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCc-eE--EEEeecCCC
Q 022184          133 D-----GHLRIMHWPSLRII--LDEP-KAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGV-AW--TFLTRNSDE  198 (301)
Q Consensus       133 d-----g~i~v~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~-~~--~~~~~~~~~  198 (301)
                      +     ..|+++++.+++..  ..+. ........+.|+|||++|+..+.   ...|.++|+.++. ..  ..+......
T Consensus       241 d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~  320 (751)
T 2xe4_A          241 DETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG  320 (751)
T ss_dssp             CTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred             CCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence            5     36888888765421  1111 22234668899999998877653   3468889988752 22  333332333


Q ss_pred             CeeEEEEccCCCcceEEEEEEeC---CcceEEEEEccCceEeee-eeccCC--CcEEEEEcCCCCEEEEeeCCCc--EEE
Q 022184          199 KIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNKIGH-KRLLRK--PASVLSISLDGKYLAMGSKDGD--ICV  270 (301)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~d~~--i~i  270 (301)
                      ....+.|+. |..++   +.+..   ....|..+|+.+...... +..+..  .+..+.+. .+.++++...++.  |.+
T Consensus       321 ~~~s~~~~~-g~~l~---~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          321 VRYDVQMHG-TSHLV---ILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             CCEEEEEET-TTEEE---EEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred             ceEEEeeee-CCEEE---EEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence            344454433 55422   12221   345788888765211122 222333  33444444 2344555566664  566


Q ss_pred             EeC
Q 022184          271 VDV  273 (301)
Q Consensus       271 ~~~  273 (301)
                      +++
T Consensus       396 ~dl  398 (751)
T 2xe4_A          396 MMA  398 (751)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            675

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.96  E-value=3.1e-07  Score=73.20  Aligned_cols=201  Identities=13%  Similarity=0.017  Sum_probs=118.2

Q ss_pred             CcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeec---------
Q 022184           64 GDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGV---------  132 (301)
Q Consensus        64 ~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~---------  132 (301)
                      ..+..+++.+ +++ |+.+...+.|..++..++... .+... ... ........+++.+ +|++.++-..         
T Consensus        80 ~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~-~~~~~-~~~-~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~  155 (322)
T 2fp8_A           80 GRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHAT-QLATS-VDG-VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ  155 (322)
T ss_dssp             CCEEEEEEETTTTE-EEEEETTTEEEEECTTCEECE-EEESE-ETT-EECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred             CCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEE-Eeccc-CCC-CcccccceEEEecCCCEEEEECCcccccccccc
Confidence            3578999998 554 555555555777776544321 11100 000 0113467899999 8986665432         


Q ss_pred             --------CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEE-eCCCcEEEEeCCCCc--eEEEEeecCCCCee
Q 022184          133 --------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGV--AWTFLTRNSDEKIE  201 (301)
Q Consensus       133 --------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~  201 (301)
                              ++.|..+|..+++... +.........++++|+++.|+.+ ...+.|.+|++....  ....+.. ... ..
T Consensus       156 ~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~  232 (322)
T 2fp8_A          156 QIMDTSDKTGRLIKYDPSTKETTL-LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PG  232 (322)
T ss_dssp             HHHHHTCCCEEEEEEETTTTEEEE-EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EE
T ss_pred             eehcccCCCceEEEEeCCCCEEEE-eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CC
Confidence                    3678888876665322 11112345679999999866555 556899999987521  1222222 223 78


Q ss_pred             EEEEccCCCcceEEEEEEe--------CCcceEEEEEccCceEeeeeeccC----CCcEEEEEcCCCCEEEEeeCCCcEE
Q 022184          202 LCRFSKDGTKPFLFCTVQR--------GDKALLAVYDISTWNKIGHKRLLR----KPASVLSISLDGKYLAMGSKDGDIC  269 (301)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~d~~i~  269 (301)
                      .+++.++|+. ++.  ...        +..+.|..+|.. ++.+..+....    ..++.+++ .+++++++...++.|.
T Consensus       233 gi~~d~~G~l-~va--~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~  307 (322)
T 2fp8_A          233 NIKRNADGHF-WVS--SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVG  307 (322)
T ss_dssp             EEEECTTSCE-EEE--EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEE
T ss_pred             CeEECCCCCE-EEE--ecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceE
Confidence            8999999974 321  111        124678889875 55555554332    34666766 4566666666778899


Q ss_pred             EEeCCCc
Q 022184          270 VVDVKKM  276 (301)
Q Consensus       270 i~~~~~~  276 (301)
                      .+++...
T Consensus       308 ~~~~~~~  314 (322)
T 2fp8_A          308 ILVYDKK  314 (322)
T ss_dssp             EEEC---
T ss_pred             EEecccc
Confidence            9987643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.94  E-value=1.5e-06  Score=68.63  Aligned_cols=226  Identities=12%  Similarity=0.049  Sum_probs=125.0

Q ss_pred             eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC
Q 022184            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (301)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (301)
                      -...++|.++   ++++++...      .+  +|+.+++.+....     ...   ....+..+++.++|+.+++.....
T Consensus        33 ~pegia~~~~---g~lyv~d~~------~~--~I~~~d~~g~~~~-----~~~---~~~~p~gia~~~dG~l~vad~~~~   93 (306)
T 2p4o_A           33 FLENLASAPD---GTIFVTNHE------VG--EIVSITPDGNQQI-----HAT---VEGKVSGLAFTSNGDLVATGWNAD   93 (306)
T ss_dssp             CEEEEEECTT---SCEEEEETT------TT--EEEEECTTCCEEE-----EEE---CSSEEEEEEECTTSCEEEEEECTT
T ss_pred             CcceEEECCC---CCEEEEeCC------CC--eEEEECCCCceEE-----EEe---CCCCceeEEEcCCCcEEEEeccCC
Confidence            3456778765   444444221      12  5677777653221     111   134688999999998655543332


Q ss_pred             --cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce-ec---------ccccC
Q 022184           86 --GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-IL---------DEPKA  153 (301)
Q Consensus        86 --~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~---------~~~~~  153 (301)
                        .|..++..+++... +..  .   ........++..+++..+++-..++.|+.+|..+++. +.         .....
T Consensus        94 ~~~v~~~d~~~g~~~~-~~~--~---~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~  167 (306)
T 2p4o_A           94 SIPVVSLVKSDGTVET-LLT--L---PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV  167 (306)
T ss_dssp             SCEEEEEECTTSCEEE-EEE--C---TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred             cceEEEEcCCCCeEEE-EEe--C---CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence              35555655554311 111  1   1112234455445544444444578999999765421 11         00011


Q ss_pred             CccEEEEEecCCCcEEEEE-eCCCcEEEEeCCC-Cce--EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184          154 HKSVLDMDFSLDSEFLATT-STDGSARIWKTED-GVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (301)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (301)
                      -.....+  +|+++.|+.+ ...+.|..+++.. ++.  ...+...  .....+++.++|+.     .++....+.|.++
T Consensus       168 ~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l-----~va~~~~~~V~~~  238 (306)
T 2p4o_A          168 FPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNL-----YGATHIYNSVVRI  238 (306)
T ss_dssp             SCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCE-----EEECBTTCCEEEE
T ss_pred             CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCE-----EEEeCCCCeEEEE
Confidence            1234555  7888755544 4667899999874 321  1222211  23678999999974     3444556789999


Q ss_pred             EccCceEe--eeeeccCCCcEEEEEc---CCCCEEEEeeCCC
Q 022184          230 DISTWNKI--GHKRLLRKPASVLSIS---LDGKYLAMGSKDG  266 (301)
Q Consensus       230 d~~~~~~~--~~~~~~~~~v~~~~~s---~~~~~l~~~~~d~  266 (301)
                      |.. ++..  ..+...-...++++|.   |+++.|++++..+
T Consensus       239 ~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          239 APD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            976 4442  2233333568999998   8888777776543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=1.3e-06  Score=76.69  Aligned_cols=199  Identities=9%  Similarity=0.051  Sum_probs=127.5

Q ss_pred             CCcEEEEEEcCCccccccccccCC-CC-----------------------CCCCCeeEEEEeeCCCEEEEeecCC-----
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMP-PL-----------------------QDAGPQKCLSFSVDGSRFAAGGVDG-----  134 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~-~~-----------------------~~~~~v~~~~~s~~~~~l~~~~~dg-----  134 (301)
                      ++.|..+|.++++...+....... ..                       .+......++++|+..+++.+..++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            578999998888775544321000 00                       0011123578888888888887665     


Q ss_pred             --------------eEEEEeCCCcceecccccCC---------ccEEEEEecCCCc---EEEEEeCCCcEEEEeCCCCce
Q 022184          135 --------------HLRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDSE---FLATTSTDGSARIWKTEDGVA  188 (301)
Q Consensus       135 --------------~i~v~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~  188 (301)
                                    .|..+|.++++.+.......         .+.....+..+|+   .++.++.+|.+.++|.++|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          39999999999876654321         2222233334665   688899999999999999998


Q ss_pred             EEEEeecC-----------CCC------------------------eeEEEEccCCCcceEEEE----------------
Q 022184          189 WTFLTRNS-----------DEK------------------------IELCRFSKDGTKPFLFCT----------------  217 (301)
Q Consensus       189 ~~~~~~~~-----------~~~------------------------v~~~~~~~~~~~~~~~~~----------------  217 (301)
                      +.......           ..+                        -..++++|+...+|+-..                
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            85443211           000                        012577777665332110                


Q ss_pred             ---E------------EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          218 ---V------------QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       218 ---~------------~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                         .            ....++.|..||+.+++.+-..... .+.....+...+.++++++.|+.++.||.++++.+..+
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence               0            1123588999999999887555433 23333345556788999999999999999999988766


Q ss_pred             c
Q 022184          283 K  283 (301)
Q Consensus       283 ~  283 (301)
                      .
T Consensus       496 ~  496 (668)
T 1kv9_A          496 E  496 (668)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.91  E-value=1.5e-06  Score=66.16  Aligned_cols=203  Identities=8%  Similarity=0.069  Sum_probs=127.0

Q ss_pred             ccccCCcceEEEECCCCCeEEE-EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEE
Q 022184           59 FDESEGDPMTIAVNPSGDDFVC-STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~-~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (301)
                      +.+-.+.+..++|+|++..|++ ...++.|...|.+ ++...++.      +......-.+++.+++.++++.-.++.+.
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~------l~g~~D~EGIa~~~~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP------LDFVKDLETIEYIGDNQFVISDERDYAIY   94 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE------CSSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe------cCCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence            4455567999999998776654 5666777777776 43322221      12235677889988887666655677888


Q ss_pred             EEeCCCccee---ccc------ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC---CCceEEEEee------cCCCC
Q 022184          138 IMHWPSLRII---LDE------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE---DGVAWTFLTR------NSDEK  199 (301)
Q Consensus       138 v~d~~~~~~~---~~~------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~------~~~~~  199 (301)
                      ++++.....+   ...      .........++|+|+++.|.++.......+|.++   ....+..+..      ..-..
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            8887543321   111      1123457899999998777776655555555553   1112222211      11224


Q ss_pred             eeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC---------CCcEEEEEcCCCCEEEEeeCCCcEEE
Q 022184          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLAMGSKDGDICV  270 (301)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~d~~i~i  270 (301)
                      +..+++.|...++    ++.+.....|..+|... +.+..+....         .....++|+++|+ |+..++-+.++.
T Consensus       175 ~S~l~~dp~tg~l----liLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~  248 (255)
T 3qqz_A          175 VSGAEFNQQKNTL----LVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYR  248 (255)
T ss_dssp             CCEEEEETTTTEE----EEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEE
T ss_pred             ceeEEEcCCCCeE----EEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEE
Confidence            7899999988764    35567788999999764 4544443332         2567899999998 444577777777


Q ss_pred             EeCC
Q 022184          271 VDVK  274 (301)
Q Consensus       271 ~~~~  274 (301)
                      |.-.
T Consensus       249 f~~~  252 (255)
T 3qqz_A          249 FTPQ  252 (255)
T ss_dssp             EEC-
T ss_pred             EEec
Confidence            7653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.91  E-value=2.4e-05  Score=70.21  Aligned_cols=227  Identities=10%  Similarity=0.037  Sum_probs=141.1

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      ...|.++...++|...+ |+.+| |.+|+..+...............-....|.++...++|. |-.|+.++-|..++..
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence            45699999998887554 44555 888987655432111000000111235789999988887 5556766778888875


Q ss_pred             Ccceeccc--c----cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-------cCCCCeeEEEEccCC
Q 022184          143 SLRIILDE--P----KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-------NSDEKIELCRFSKDG  209 (301)
Q Consensus       143 ~~~~~~~~--~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~  209 (301)
                      +.......  .    -....|.++...++|+ |..|+.++-|..||..+++.......       -....|.++...+++
T Consensus       339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g  417 (795)
T 4a2l_A          339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK  417 (795)
T ss_dssp             GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred             cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence            54321110  0    0234699999888886 44567777899999877654332211       112458888888888


Q ss_pred             CcceEEEEEEeCCcceEEEEEccCceEeeeee----ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccc-
Q 022184          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKR----LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-  284 (301)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-  284 (301)
                      ..     +..+..++-|..||..+++......    .....|.++...++|++.+.. . +-+.+|+..+++....... 
T Consensus       418 ~~-----lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~  490 (795)
T 4a2l_A          418 SL-----VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEK  490 (795)
T ss_dssp             TE-----EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCT
T ss_pred             CE-----EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccc
Confidence            72     2445555669999988765432211    224578899988888755544 4 4589999888765433211 


Q ss_pred             ----cccCccEEEEEEccCCC
Q 022184          285 ----LHLGTSIALVEFCPTQR  301 (301)
Q Consensus       285 ----~~~~~~v~~~~~spdg~  301 (301)
                          .. ...|.++...++|+
T Consensus       491 ~~~~~~-~~~i~~i~~d~~g~  510 (795)
T 4a2l_A          491 DGTPVV-SKQITTLFRDSHKR  510 (795)
T ss_dssp             TCCBCC-CCCEEEEEECTTCC
T ss_pred             cccccC-CceEEEEEECCCCC
Confidence                12 35688888887764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.88  E-value=2e-05  Score=70.74  Aligned_cols=225  Identities=12%  Similarity=0.047  Sum_probs=139.9

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCC-CCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~  141 (301)
                      ...|.++...++|. |..|+.++-|..|+..++............. .-....|.++...++++.|.+|+.++-|..+|.
T Consensus       356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            45699999988886 4456666559999876554311110000000 012356889988888875667777777999998


Q ss_pred             CCcceecccc----cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-----cCCCCeeEEEEccCCCcc
Q 022184          142 PSLRIILDEP----KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-----NSDEKIELCRFSKDGTKP  212 (301)
Q Consensus       142 ~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~  212 (301)
                      .+++...-..    .....|.++...++|++.+.. . +-+.+||..+++.......     .....|.++...++|.. 
T Consensus       435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-  511 (795)
T 4a2l_A          435 NSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL-  511 (795)
T ss_dssp             TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE-
T ss_pred             CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE-
Confidence            7765422111    123578999988888755544 3 4588899877654332211     11245889999988884 


Q ss_pred             eEEEEEEeCCcceEEEEEccCceEeeeee-------ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc-c
Q 022184          213 FLFCTVQRGDKALLAVYDISTWNKIGHKR-------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-R  284 (301)
Q Consensus       213 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~  284 (301)
                           ..++. +-|..||..+.+. . +.       .....|.++..+++|++.+.. .. -|..||..+.+...... .
T Consensus       512 -----Wigt~-~Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~~~~~~  581 (795)
T 4a2l_A          512 -----WIGGE-EGLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKRYNTTN  581 (795)
T ss_dssp             -----EEEES-SCEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECGGG
T ss_pred             -----EEEeC-CceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEEeCCCC
Confidence                 44444 4588899877654 2 21       123568899999998855544 33 58889987765443211 1


Q ss_pred             cccCccEEEEEEccCCC
Q 022184          285 LHLGTSIALVEFCPTQR  301 (301)
Q Consensus       285 ~~~~~~v~~~~~spdg~  301 (301)
                      +-....|.++...++|+
T Consensus       582 gl~~~~i~~i~~d~~g~  598 (795)
T 4a2l_A          582 GLPNNVVYGILEDSFGR  598 (795)
T ss_dssp             TCSCSCEEEEEECTTSC
T ss_pred             CCchhheEEEEECCCCC
Confidence            11145688888887764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.87  E-value=1e-06  Score=77.31  Aligned_cols=256  Identities=11%  Similarity=0.007  Sum_probs=137.0

Q ss_pred             EEeeeecCCCccEEEecCCcccc---CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-C
Q 022184            9 CGSWIKRPENVNLVVLGKSSRAS---SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-N   84 (301)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d   84 (301)
                      .+++.+  .++.+++.|+.....   ...+.-.++.||+....+...+..   ...+.....++++..+++.++.|+. +
T Consensus       190 ~~av~~--~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~---~~~~~~~~~~~~~~~~g~lyv~GG~~~  264 (656)
T 1k3i_A          190 AAAIEP--TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT---VTKHDMFCPGISMDGNGQIVVTGGNDA  264 (656)
T ss_dssp             EEEEET--TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE---ECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             eEEEEe--cCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc---CCCCCCccccccCCCCCCEEEeCCCCC
Confidence            345553  125677776643211   012333677788777655322111   1122333456788889999999884 4


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cC-----CeEEEEeCCCcceeccc----ccCC
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD-----GHLRIMHWPSLRIILDE----PKAH  154 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-----g~i~v~d~~~~~~~~~~----~~~~  154 (301)
                      ..+.+||..+.+-..      ...+.....-.+++..+++++++.|+ .+     ..+.+||..+.+-...-    ....
T Consensus       265 ~~v~~yd~~t~~W~~------~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~  338 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIP------GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML  338 (656)
T ss_dssp             TCEEEEEGGGTEEEE------CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGC
T ss_pred             CceEEecCcCCceeE------CCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccc
Confidence            579999987664311      11222222224456667899999988 34     56899998776532210    0000


Q ss_pred             ccEEEEEecCCCcEEEEEeCCC---------cEEEEeCCCCceEEEEeecCC--------CCeeEEEEccCCCcceEEEE
Q 022184          155 KSVLDMDFSLDSEFLATTSTDG---------SARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~---------~i~i~d~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~  217 (301)
                      ..-....+..++..++.++.++         .+..||..+............        ..-.++.|...+..+    +
T Consensus       339 ~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i----~  414 (656)
T 1k3i_A          339 TADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKI----L  414 (656)
T ss_dssp             CCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEE----E
T ss_pred             cccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeE----E
Confidence            0000012234555556665443         467888887664433322111        112344454433332    3


Q ss_pred             EEeCCcc-----------eEEEEEccCceEeeee--eccCCC-cEEEEEcCCCCEEEEeeCC-----------CcEEEEe
Q 022184          218 VQRGDKA-----------LLAVYDISTWNKIGHK--RLLRKP-ASVLSISLDGKYLAMGSKD-----------GDICVVD  272 (301)
Q Consensus       218 ~~~~~~~-----------~i~~~d~~~~~~~~~~--~~~~~~-v~~~~~s~~~~~l~~~~~d-----------~~i~i~~  272 (301)
                      +.++.+.           .|.+||..+.+-....  ...... -.+++..|++++++.|+.+           ..+.+||
T Consensus       415 v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd  494 (656)
T 1k3i_A          415 TFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV  494 (656)
T ss_dssp             EECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred             EEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc
Confidence            4444321           6888888765433221  111122 2345667899999999864           4689999


Q ss_pred             CCCceee
Q 022184          273 VKKMEIN  279 (301)
Q Consensus       273 ~~~~~~~  279 (301)
                      ..+.+..
T Consensus       495 p~t~~W~  501 (656)
T 1k3i_A          495 PEQDTFY  501 (656)
T ss_dssp             GGGTEEE
T ss_pred             CCCCcee
Confidence            9876543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.86  E-value=3.6e-07  Score=81.29  Aligned_cols=158  Identities=6%  Similarity=-0.051  Sum_probs=97.5

Q ss_pred             CeeEEEEe-eCCCEEEEeec-C----CeEEEEeCCCc-ceecccccCCccEEEEEecCCCcEEEEEeCC-----CcEEEE
Q 022184          114 PQKCLSFS-VDGSRFAAGGV-D----GHLRIMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIW  181 (301)
Q Consensus       114 ~v~~~~~s-~~~~~l~~~~~-d----g~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~  181 (301)
                      .+...+|| |||++|+.+.. +    ..|+++|+.++ +.+....  ......++|+||++.|+....|     ..|.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~--~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV--SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE--EEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc--cCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            56789999 99999886643 2    35999999988 6321110  1123468899999988777765     258888


Q ss_pred             eCCCCce--EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc--eE--eeeeeccCCCcEEEEEcCC
Q 022184          182 KTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NK--IGHKRLLRKPASVLSISLD  255 (301)
Q Consensus       182 d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~--~~~~~~~~~~v~~~~~s~~  255 (301)
                      ++.++..  ...+..........+.|+|||+++++  .........|.++|+.++  +.  .............+.|+.+
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~--~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g  330 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCI--GSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT  330 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEE--EEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEE--EecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence            8877642  23333222334667899999997433  233445678999999875  22  2122223345555655544


Q ss_pred             CCEEEEeeCC----CcEEEEeCCC
Q 022184          256 GKYLAMGSKD----GDICVVDVKK  275 (301)
Q Consensus       256 ~~~l~~~~~d----~~i~i~~~~~  275 (301)
                      +.+++....+    ..|..+++.+
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCC
Confidence            4444444333    3677777765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.84  E-value=1.9e-05  Score=62.61  Aligned_cols=208  Identities=7%  Similarity=-0.072  Sum_probs=124.9

Q ss_pred             CCcceEEEECCCCCeEEEEe-cCCcEEEEEEcCC---ccccccccccCCCCCCCCCeeEEEEeeCCCEEE-EeecCCeEE
Q 022184           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGG---ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLR  137 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~  137 (301)
                      ...+..++|++.+..|+.+. ..+.|+.+++.+.   ........      ........+++++.+..|+ +-...+.|.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~------~~~~~p~glavd~~~~~ly~~d~~~~~I~  102 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------RDIQAPDGLAVDWIHSNIYWTDSVLGTVS  102 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC------SSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe------CCCCCcCEEEEeecCCeEEEEECCCCEEE
Confidence            34578999998776666554 4578988888752   11111110      1113457889987555554 445678999


Q ss_pred             EEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-C-CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-D-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      ++++..................++++|.+..|+.+.. . +.|...++.. .....+....-.....+++++++..+|  
T Consensus       103 ~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY--  179 (316)
T 1ijq_A          103 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLY--  179 (316)
T ss_dssp             EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEE--
T ss_pred             EEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEE--
Confidence            9998654332222223346789999996665554443 2 6788888754 333333322234578999999887643  


Q ss_pred             EEEEeCCcceEEEEEccCceEeeeeec--cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          216 CTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                        ++....+.|..+|+...........  .......+++. .+.++++-...+.|..++..+++....+
T Consensus       180 --~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          180 --WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             --EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             --EEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence              4556678999999875332211121  12345778885 3455555556688999998776654443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=1.6e-06  Score=71.83  Aligned_cols=154  Identities=6%  Similarity=0.036  Sum_probs=98.2

Q ss_pred             cceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC-C----eEEE
Q 022184           65 DPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-G----HLRI  138 (301)
Q Consensus        65 ~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g----~i~v  138 (301)
                      ....++++| ++..|..+...+.|+.+|++++..... .       ........++|++++++|+++... +    .+.+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~-~-------~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~  209 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV-Y-------SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI  209 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEE-E-------CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEE-e-------cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence            568899998 456676666657788888776543211 1       123567899999999966666542 1    3343


Q ss_pred             EeCCCccee--cccccCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          139 MHWPSLRII--LDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       139 ~d~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      ++. .+...  ..+. .......++++| ++.++++-..++.|..++...+................++|+|+++++   
T Consensus       210 ~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l---  284 (430)
T 3tc9_A          210 LTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA---  284 (430)
T ss_dssp             EEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE---
T ss_pred             EeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE---
Confidence            442 33221  1111 123457788999 676666666778999999987654333332222347899999999963   


Q ss_pred             EEEEeCCcceEEEEEcc
Q 022184          216 CTVQRGDKALLAVYDIS  232 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~  232 (301)
                       .++....+.|..++..
T Consensus       285 -yv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          285 -YIVVVNQHYILRSDYD  300 (430)
T ss_dssp             -EEEETTTTEEEEEEEE
T ss_pred             -EEEECCCCEEEEEeCC
Confidence             3455667889998765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.83  E-value=5.6e-06  Score=67.36  Aligned_cols=189  Identities=8%  Similarity=0.006  Sum_probs=118.3

Q ss_pred             CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC
Q 022184           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (301)
Q Consensus        74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  153 (301)
                      ++..++.++.++.|..+|.++++..........  . ...+    ..  .+..+++++.++.|..+|..+++.+......
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~-~~~p----~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--A-LSRP----VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSC--C-CSCC----EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--e-EcCC----EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence            456788888899999999988876443322110  0 0111    11  2457888888999999999999876655432


Q ss_pred             CccE-----EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCe---eE---EEEcc--CCCcceEEEEEEe
Q 022184          154 HKSV-----LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI---EL---CRFSK--DGTKPFLFCTVQR  220 (301)
Q Consensus       154 ~~~i-----~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v---~~---~~~~~--~~~~~~~~~~~~~  220 (301)
                      ....     ......  +..++.++.++.+..+|.++++.+-..........   ..   +.-.|  .+..     +..+
T Consensus       173 ~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----v~~~  245 (376)
T 3q7m_A          173 MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGV-----VFAL  245 (376)
T ss_dssp             C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTE-----EEEE
T ss_pred             CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCE-----EEEE
Confidence            2111     111222  44677788899999999999988776653221000   00   00111  1232     4556


Q ss_pred             CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      +.++.+..+|.++++.+-....  .....+..  ++..+++++.++.|..+|..+++.+...
T Consensus       246 ~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          246 AYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             CTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             ecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence            7788999999999887644432  23344444  4667888888999999999998866443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.80  E-value=6.8e-06  Score=66.15  Aligned_cols=199  Identities=9%  Similarity=-0.054  Sum_probs=121.6

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEEEeC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHW  141 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~  141 (301)
                      .+...|.+..+ ..+|+.+. ...|+..++.+.....  .      ......+..++|++....|+.. ...+.|+.+++
T Consensus        33 ~d~~~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~--~------~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~  102 (349)
T 3v64_C           33 PDRRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTL--L------LNNLENAIALDFHHRRELVFWSDVTLDRILRANL  102 (349)
T ss_dssp             TTSSCEEESSS-CCEEEEEC-BSCEEEECTTSCCEEE--E------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCccccccc-CceeEeec-ccceEEEeCCCCeeEE--e------ecCCCceEEEEEeccccEEEEEeccCCceEEEec
Confidence            34455666666 34555543 3447777765543211  1      1123457899999866666555 45788999998


Q ss_pred             CCcceecccccCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184          142 PSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      ..................+++.+.+ +++++-...+.|.+.++........+. ........+++.|.+..+|    ++.
T Consensus       103 ~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly----~td  177 (349)
T 3v64_C          103 NGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIY----WTD  177 (349)
T ss_dssp             TSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEE----EEE
T ss_pred             CCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEE----Eec
Confidence            7654332222223455788998754 455555567889999987554333332 2233578999999877643    333


Q ss_pred             CCc-ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCc
Q 022184          221 GDK-ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKM  276 (301)
Q Consensus       221 ~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~  276 (301)
                      ... +.|..+++............-.....++++|++..|+.+. ..+.|..+++...
T Consensus       178 ~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          178 WGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             CSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            334 7899999875433222222234578999999777666664 4578999998754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.80  E-value=3.5e-05  Score=63.23  Aligned_cols=208  Identities=7%  Similarity=-0.073  Sum_probs=126.9

Q ss_pred             CCcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCcc---ccccccccCCCCCCCCCeeEEEEeeCCCEE-EEeecCCeEE
Q 022184           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGAT---DINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLR  137 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~  137 (301)
                      ...+..++|++.+..|..+. ..+.|+.+++.+...   ...+..      ........+++.+.+..| ++-...+.|.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~------~~~~~p~glavD~~~~~lY~~d~~~~~I~  184 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------RDIQAPDGLAVDWIHSNIYWTDSVLGTVS  184 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC------SSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe------CCCCCcccEEEEecCCceEEEECCCCeEE
Confidence            45688999998766666554 457788888765321   111110      122456789998844444 4445678999


Q ss_pred             EEeCCCcceecccccCCccEEEEEecCCCcEEEEEe-C-CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-T-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      +.+++.......+.........++++|.+..|+... . .+.|...++........... .-.....+++++++..+|  
T Consensus       185 ~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~-~l~~P~glavd~~~~~lY--  261 (400)
T 3p5b_L          185 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLY--  261 (400)
T ss_dssp             EECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEE--
T ss_pred             EEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC-CCCceEEEEEEeCCCEEE--
Confidence            999875544333333334678999999666555544 2 36888888865444333332 223578999999888743  


Q ss_pred             EEEEeCCcceEEEEEccCceEeeeeec--cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          216 CTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                        ++-.....|..+|+...........  .-.....+++. .+.++.+-...+.|..++..+++.+..+
T Consensus       262 --~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          262 --WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             --EEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             --EEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence              4456678999999875433222222  12345567763 3344455556678999997777655554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.80  E-value=1.9e-06  Score=70.14  Aligned_cols=197  Identities=10%  Similarity=0.066  Sum_probs=119.1

Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCC--CCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD--AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  152 (301)
                      +..+++++.++.|..+|.++++..............+  ...+.. ....++..+++++.++.|..+|..+++.+.....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            5677778888889999998877644332211000000  122222 2223566788888899999999999987655543


Q ss_pred             CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCC----eeEEEEccCCCcceEEEEEEeCCcceEEE
Q 022184          153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (301)
Q Consensus       153 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~i~~  228 (301)
                      ...........  +..++.++.++.+..+|.++++.+-.........    ....... ++ .     ++.+..++.|..
T Consensus       132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~-~-----v~~g~~~g~l~~  202 (376)
T 3q7m_A          132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG-A-----AVVGGDNGRVSA  202 (376)
T ss_dssp             SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT-E-----EEECCTTTEEEE
T ss_pred             CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC-E-----EEEEcCCCEEEE
Confidence            32211111222  4477778889999999999999887765432110    0111222 33 2     466777899999


Q ss_pred             EEccCceEeeeeeccCCC----cE---EEEEcC--CCCEEEEeeCCCcEEEEeCCCceeecc
Q 022184          229 YDISTWNKIGHKRLLRKP----AS---VLSISL--DGKYLAMGSKDGDICVVDVKKMEINHW  281 (301)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~----v~---~~~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~~~  281 (301)
                      +|..+++.+-........    +.   .+.-.|  .+..+++++.++.+..+|..+++.+..
T Consensus       203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~  264 (376)
T 3q7m_A          203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK  264 (376)
T ss_dssp             EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE
T ss_pred             EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee
Confidence            999998876544322110    00   011111  245778888899999999999877644

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.78  E-value=2.5e-05  Score=61.94  Aligned_cols=187  Identities=9%  Similarity=-0.054  Sum_probs=113.1

Q ss_pred             eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEEEeCCC----cceecccc
Q 022184           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPS----LRIILDEP  151 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~~~----~~~~~~~~  151 (301)
                      +|+.+.. ..|+..++.+.+....        ......+..++|++++..|+.+ ..++.|..+++..    ......+.
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~--------~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~   73 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSL--------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS   73 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEE--------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             EEEEECC-CeEEEEECCCcceEeh--------hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence            4555444 4488888876543211        1123467899999876656555 4568999999875    22111122


Q ss_pred             cCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          152 KAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       152 ~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                      ........+++.+.+ +++++-...+.|.++++........+. ........+++.|.+..+|+   +..+..+.|..++
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~---~d~~~~~~I~~~~  149 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYW---TDWGTPAKIKKGG  149 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEE---EECSSSCEEEEEE
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEE---EccCCCCeEEEEc
Confidence            222355788998754 455555667899999987554433333 22345789999998776432   2222237899888


Q ss_pred             ccCceEeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCc
Q 022184          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKM  276 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~  276 (301)
                      +............-.....++++|++..|+.+. ..+.|..+|+...
T Consensus       150 ~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            864332211222234678999999877776665 4578999998753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.78  E-value=1.8e-05  Score=60.12  Aligned_cols=204  Identities=9%  Similarity=0.023  Sum_probs=124.5

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      ..+..++|.|+.  ..+.++...        .-+|+.++.....+..     ..+.+ ......+++.+++.++++.-.+
T Consensus        27 ~~lSGla~~~~~--~~L~aV~d~--------~~~I~~ld~~g~v~~~-----i~l~g-~~D~EGIa~~~~g~~~vs~E~~   90 (255)
T 3qqz_A           27 NNISSLTWSAQS--NTLFSTINK--------PAAIVEMTTNGDLIRT-----IPLDF-VKDLETIEYIGDNQFVISDERD   90 (255)
T ss_dssp             SCEEEEEEETTT--TEEEEEEET--------TEEEEEEETTCCEEEE-----EECSS-CSSEEEEEECSTTEEEEEETTT
T ss_pred             cCcceeEEeCCC--CEEEEEECC--------CCeEEEEeCCCCEEEE-----EecCC-CCChHHeEEeCCCEEEEEECCC
Confidence            458889999653  556666443        2267778777433321     12232 2568889999888776766567


Q ss_pred             CcEEEEEEcCCcccccccccc--CCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC---cceeccc-------cc
Q 022184           85 GGCKLFEVYGGATDINLLAKK--MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---LRIILDE-------PK  152 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~-------~~  152 (301)
                      +.+.++++.............  ............++|+|+++.|+++.+.....+|.++.   ...+...       ..
T Consensus        91 ~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~  170 (255)
T 3qqz_A           91 YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF  170 (255)
T ss_dssp             TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred             CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence            889999987654311111111  11223456689999999988888877765555655531   1111111       01


Q ss_pred             CCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCC--------CCeeEEEEccCCCcceEEEEEEeCCc
Q 022184          153 AHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDK  223 (301)
Q Consensus       153 ~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~~  223 (301)
                      ....+.+++++|... +++.......+.++|.. ++.+..+....+        .....++|.++|+.      ...++.
T Consensus       171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l------yIvsE~  243 (255)
T 3qqz_A          171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI------YIVSEP  243 (255)
T ss_dssp             CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE------EEEETT
T ss_pred             ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE------EEEcCC
Confidence            123578999999554 55566677789999975 556665543321        25789999999973      444566


Q ss_pred             ceEEEEEc
Q 022184          224 ALLAVYDI  231 (301)
Q Consensus       224 ~~i~~~d~  231 (301)
                      +.++.|..
T Consensus       244 n~~y~f~~  251 (255)
T 3qqz_A          244 NRFYRFTP  251 (255)
T ss_dssp             TEEEEEEC
T ss_pred             ceEEEEEe
Confidence            66666653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.77  E-value=4.7e-06  Score=69.08  Aligned_cols=202  Identities=7%  Similarity=-0.023  Sum_probs=120.1

Q ss_pred             CcceEEEECCC--CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC-----eE
Q 022184           64 GDPMTIAVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HL  136 (301)
Q Consensus        64 ~~v~~~~~~~~--~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i  136 (301)
                      .....++|+|+  ...|..+...+.|+.++..++......        ........++++++|+ |+++...+     .+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--------~~~~~P~giavd~dG~-lyVad~~~~~~~~gv  209 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--------TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGI  209 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--------CCCSCEEEEEECTTCC-EEEEECCSCTTSEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--------cCCCCccEEEECCCCC-EEEEcCCCCcccceE
Confidence            35779999984  445666555478999988665542111        1234578999999999 54444321     23


Q ss_pred             EEEeCCCcceecccccCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEEE-eecCCCCeeEEEEccCCCcceE
Q 022184          137 RIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       137 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      ...+...+...............++++| ++.++++-..++.|+.+|..++.....+ ..........++|+|+++.+  
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L--  287 (433)
T 4hw6_A          210 YLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA--  287 (433)
T ss_dssp             EEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE--
T ss_pred             EEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE--
Confidence            3333221111000111123456788999 6666666667788999999877663333 22222223579999999853  


Q ss_pred             EEEEEeCCcceEEEEEccC--ceE--eeeeecc---------------CCCcEEEEE---------cCCCCEEEEeeCCC
Q 022184          215 FCTVQRGDKALLAVYDIST--WNK--IGHKRLL---------------RKPASVLSI---------SLDGKYLAMGSKDG  266 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~--~~~--~~~~~~~---------------~~~v~~~~~---------s~~~~~l~~~~~d~  266 (301)
                        .++......|..++...  +..  ...+...               -.....+++         .++|.++++-...+
T Consensus       288 --Yvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~  365 (433)
T 4hw6_A          288 --YIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH  365 (433)
T ss_dssp             --EEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred             --EEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence              34556678899988652  211  0111111               123567899         77777777666778


Q ss_pred             cEEEEeCCCceee
Q 022184          267 DICVVDVKKMEIN  279 (301)
Q Consensus       267 ~i~i~~~~~~~~~  279 (301)
                      +|+.++. ++...
T Consensus       366 ~I~~~~~-~G~v~  377 (433)
T 4hw6_A          366 TVRVLTP-EGRVT  377 (433)
T ss_dssp             EEEEECT-TSEEE
T ss_pred             EEEEECC-CCCEE
Confidence            8999985 55443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.76  E-value=1.2e-06  Score=75.32  Aligned_cols=165  Identities=12%  Similarity=0.039  Sum_probs=106.1

Q ss_pred             EEEEeeCCCEEEEeecC----------------CeEEEEeCCCcceecccccCC----------ccEEEEEecCCCc---
Q 022184          117 CLSFSVDGSRFAAGGVD----------------GHLRIMHWPSLRIILDEPKAH----------KSVLDMDFSLDSE---  167 (301)
Q Consensus       117 ~~~~s~~~~~l~~~~~d----------------g~i~v~d~~~~~~~~~~~~~~----------~~i~~~~~~~~~~---  167 (301)
                      .+++.++...++.+..+                +.|..+|.++++.+.......          .++. +...++|+   
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence            35667766667666532                359999999998866554221          1221 22334674   


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEeecCC------------CCe--------------------------eEEEEccCC
Q 022184          168 FLATTSTDGSARIWKTEDGVAWTFLTRNSD------------EKI--------------------------ELCRFSKDG  209 (301)
Q Consensus       168 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------~~v--------------------------~~~~~~~~~  209 (301)
                      .++.++.+|.+.++|.++++.+........            .++                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            577788999999999999998876653220            111                          235778877


Q ss_pred             CcceEEEEE------------------Ee--------------CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCC
Q 022184          210 TKPFLFCTV------------------QR--------------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK  257 (301)
Q Consensus       210 ~~~~~~~~~------------------~~--------------~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  257 (301)
                      ..+|+...-                  .+              ..++.|..||..+++.+-..... ..+....+...+.
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg  476 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGG  476 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTT
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCC
Confidence            754432100                  00              24689999999999877555432 2222222333466


Q ss_pred             EEEEeeCCCcEEEEeCCCceeecccc
Q 022184          258 YLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       258 ~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      .+++++.|+.|+.||.++++++..+.
T Consensus       477 ~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          477 LVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            78889999999999999999887664

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.75  E-value=1.4e-05  Score=63.42  Aligned_cols=206  Identities=8%  Similarity=-0.076  Sum_probs=125.6

Q ss_pred             cceEEEECCCCCeEEEE-ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEE-EEeecCCeEEEEeCC
Q 022184           65 DPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWP  142 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~v~d~~  142 (301)
                      .+..++|++.+..|..+ ...+.|+.+++.+..........      .......+++.+.+..| ++-...+.|.+++++
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~------~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d  109 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS------GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD  109 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE------CCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC------CCCCccEEEEEcCCCeEEEEECCCCEEEEEECC
Confidence            46789999866656544 45678888887765321111111      12345778998755444 444557889999986


Q ss_pred             CcceecccccCCccEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      .................+++.|.+..|+.+.  ..+.|...++..... ..+....-.....++++|++..+|    ++-
T Consensus       110 G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~l~~Pnglavd~~~~~lY----~aD  184 (318)
T 3sov_A          110 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLY----WAD  184 (318)
T ss_dssp             SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEE----EEE
T ss_pred             CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEEECCCCCccEEEEeccCCEEE----EEE
Confidence            5433222223335678999999665555554  357788888764333 333222223578999999887643    455


Q ss_pred             CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      ...+.|..+|+..................+++..+ .++.+-...+.|..++..+++....+
T Consensus       185 ~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          185 AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCCceEEE
Confidence            67789999998753322222223345677777533 44445456678999998777654443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.75  E-value=6.8e-06  Score=67.12  Aligned_cols=196  Identities=9%  Similarity=-0.064  Sum_probs=119.4

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEEEeCCCc
Q 022184           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSL  144 (301)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~  144 (301)
                      -.+.+..+ ..+|+.+.. ..|+.+++.+......        ......+..++|++.+..|+.. ...+.|+.+++...
T Consensus        79 ~~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~~--------~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~  148 (386)
T 3v65_B           79 RSCKALGP-EPVLLFANR-IDIRQVLPHRSEYTLL--------LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS  148 (386)
T ss_dssp             SCEEECSS-CCEEEEECB-SCEEEECTTSCCCEEE--------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CeECCccc-cceeEeecC-ccceeeccCCCcEEEE--------ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            34555545 335555433 4577777765433111        1123457899999865555544 45788999998765


Q ss_pred             ceecccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc
Q 022184          145 RIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (301)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  223 (301)
                      ...............+++.+.+. ++++-...+.|.+.++........+. ........+++.|.+..+|    ++....
T Consensus       149 ~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly----~td~~~  223 (386)
T 3v65_B          149 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIY----WTDWGN  223 (386)
T ss_dssp             CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEE----EEECSS
T ss_pred             CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEE----EeccCC
Confidence            43322222223456788887544 45555566789999887554333333 2223578999999887643    233333


Q ss_pred             -ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCc
Q 022184          224 -ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKM  276 (301)
Q Consensus       224 -~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~  276 (301)
                       +.|..+++............-.....++++|++..|+.+. ..+.|..+++...
T Consensus       224 ~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          224 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             SCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence             7899999875433222222234578999998776666664 4578999998754

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.70  E-value=1.4e-06  Score=75.04  Aligned_cols=165  Identities=14%  Similarity=0.086  Sum_probs=105.4

Q ss_pred             EEEEeeCCCEEEEeec--------------------C----CeEEEEeCCCcceecccccC-C---------ccEEEEEe
Q 022184          117 CLSFSVDGSRFAAGGV--------------------D----GHLRIMHWPSLRIILDEPKA-H---------KSVLDMDF  162 (301)
Q Consensus       117 ~~~~s~~~~~l~~~~~--------------------d----g~i~v~d~~~~~~~~~~~~~-~---------~~i~~~~~  162 (301)
                      .++++|+..+++.+..                    |    +.|..+|.++++.+..+... +         .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4577777777776653                    2    58999999999987665321 1         1221 222


Q ss_pred             c-CCCc---EEEEEeCCCcEEEEeCCCCceEEEEeecCC------------CCe--------------------------
Q 022184          163 S-LDSE---FLATTSTDGSARIWKTEDGVAWTFLTRNSD------------EKI--------------------------  200 (301)
Q Consensus       163 ~-~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------~~v--------------------------  200 (301)
                      . .+|+   .++.++.+|.++++|.++++.+........            .++                          
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            2 4674   688899999999999999998876653320            000                          


Q ss_pred             ------eEEEEccCCCcceEEEEE----------------------------EeCCcceEEEEEccCceEeeeeeccCCC
Q 022184          201 ------ELCRFSKDGTKPFLFCTV----------------------------QRGDKALLAVYDISTWNKIGHKRLLRKP  246 (301)
Q Consensus       201 ------~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~~  246 (301)
                            ..++++|+...+|+...-                            ....++.|..||+.+++.+-+..... +
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~  487 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-P  487 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-C
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-C
Confidence                  134566665543321100                            01236889999999998765544322 2


Q ss_pred             cEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       247 v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      ...-.....+.++++++.|+.++.||.++++++..+.
T Consensus       488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence            2211222246678889999999999999999887764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.68  E-value=0.00015  Score=64.92  Aligned_cols=226  Identities=11%  Similarity=0.038  Sum_probs=136.7

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccc---cCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK---KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  139 (301)
                      ...|.++...++|. |-.|+.++-|..++.............   ....+ ....|.++...++|+ |..|+.++-|..|
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~v~~i~~d~~g~-lWigt~~~Gl~~~  388 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSL-SNKVVSSVCDDGQGK-LWIGTDGGGINVF  388 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCC-SSSCEEEEEECTTSC-EEEEEBSSCEEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCC-CCcceEEEEEcCCCC-EEEEeCCCcEEEE
Confidence            56799999998886 555665555888887654321111000   00111 235688888887776 5566656668889


Q ss_pred             eCCCcceeccc---ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee--cCCCCeeEEEEccCCCcceE
Q 022184          140 HWPSLRIILDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       140 d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~  214 (301)
                      +..++....-.   ......|.++...+++.+.+ ++.++-+..+|.++++... +..  .....|.++...+++..   
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~l---  463 (781)
T 3v9f_A          389 ENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYEDKNKKI---  463 (781)
T ss_dssp             ETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEECTTSEE---
T ss_pred             ECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEECCCCCE---
Confidence            97665432211   11235789998888776544 6666778899987765432 221  12346888888888873   


Q ss_pred             EEEEEeCCcceEEEEEccCceEeeeeecc-----CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc-ccccC
Q 022184          215 FCTVQRGDKALLAVYDISTWNKIGHKRLL-----RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-RLHLG  288 (301)
Q Consensus       215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~  288 (301)
                         ..++. +-|..||..+++........     ...|.++...++|++.+. +.++-|..|+..+++...... .+-..
T Consensus       464 ---wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~  538 (781)
T 3v9f_A          464 ---WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCS  538 (781)
T ss_dssp             ---EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSC
T ss_pred             ---EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCC
Confidence               44444 45889998775543222111     356889999998875554 443448889987765443221 11114


Q ss_pred             ccEEEEEEccCCC
Q 022184          289 TSIALVEFCPTQR  301 (301)
Q Consensus       289 ~~v~~~~~spdg~  301 (301)
                      ..|.++...++|+
T Consensus       539 ~~i~~i~~d~~g~  551 (781)
T 3v9f_A          539 NTINQIYRSSKGQ  551 (781)
T ss_dssp             SCEEEEEECTTSC
T ss_pred             CeeEEEEECCCCC
Confidence            5688888777764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=0.00012  Score=65.51  Aligned_cols=226  Identities=12%  Similarity=0.010  Sum_probs=134.3

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      ...|.++...++|...+. +.+| +.+||..+....................|.++...++|. |..|+..+-|.++|..
T Consensus       210 ~~~i~~i~~d~~g~lwig-t~~G-l~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~  286 (781)
T 3v9f_A          210 GNDVRCIYKDTNGNIWIG-TSKG-LALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ  286 (781)
T ss_dssp             CSSEEEEEECTTCCEEEE-ETTE-EEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred             CCceeEEEEcCCCCEEEE-eCCc-HheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence            356899999888875554 4454 888987655432111000000011235688888887775 5556664568888876


Q ss_pred             Ccceecccc--------------cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee--------cCCCCe
Q 022184          143 SLRIILDEP--------------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR--------NSDEKI  200 (301)
Q Consensus       143 ~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~~~v  200 (301)
                      +.+......              -....|.++...++|. |-.|+.++-|..++............        -....|
T Consensus       287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v  365 (781)
T 3v9f_A          287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV  365 (781)
T ss_dssp             CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred             CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence            654321110              1234789999988886 55566677788898876543322110        012358


Q ss_pred             eEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee---eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      .++...++|.      +..++.++-|..||..++......   ......|.++...+++++.+ |+.++-|..++..+++
T Consensus       366 ~~i~~d~~g~------lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~  438 (781)
T 3v9f_A          366 SSVCDDGQGK------LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKK  438 (781)
T ss_dssp             EEEEECTTSC------EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCE
T ss_pred             EEEEEcCCCC------EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCc
Confidence            8888888887      455665566889998765432211   12235688888888876544 6666679999988776


Q ss_pred             eecccc-ccccCccEEEEEEccCC
Q 022184          278 INHWSK-RLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       278 ~~~~~~-~~~~~~~v~~~~~spdg  300 (301)
                      ...... ... ...|.++...++|
T Consensus       439 ~~~~~~~~~~-~~~v~~i~~d~~g  461 (781)
T 3v9f_A          439 FQIIELEKNE-LLDVRVFYEDKNK  461 (781)
T ss_dssp             EEECCSTTTC-CCCEEEEEECTTS
T ss_pred             EEEeccCCCC-CCeEEEEEECCCC
Confidence            543321 112 4568888777665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.62  E-value=5.5e-05  Score=62.05  Aligned_cols=188  Identities=10%  Similarity=-0.030  Sum_probs=117.1

Q ss_pred             eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCCcc----eecccc
Q 022184           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLR----IILDEP  151 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~----~~~~~~  151 (301)
                      +|+.+. ...|+..++........        ......+..++|++....|+.+. ..+.|+.+++....    ......
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~--------~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~  155 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSL--------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  155 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEE--------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC
T ss_pred             eeEEec-cceeEEEccCCcceeEe--------ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe
Confidence            555543 45688888765543111        12335678999998666665554 56889988886521    222222


Q ss_pred             cCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          152 KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       152 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                      ........+++.+ .++++++-...+.|.+.++........+.. .......+++.|.+..+|.   .-.+..+.|...+
T Consensus       156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~ly~---td~~~~~~I~~~~  231 (400)
T 3p5b_L          156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYW---TDWGTPAKIKKGG  231 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-SSCCEEEEEEETTTTEEEE---EECSSSCCEEEEE
T ss_pred             CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-CCCCcceEEEecccCeEEE---EeCCCCCEEEEEe
Confidence            2334678899988 455555555678899999876554444432 2334789999998776432   2223347899999


Q ss_pred             ccCceEeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCce
Q 022184          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKME  277 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~  277 (301)
                      +............-.....|++++++..|+.+. ..+.|..+|+....
T Consensus       232 ~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          232 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred             CCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence            875433322222235678999999877777764 45789999987543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.60  E-value=1.3e-06  Score=76.92  Aligned_cols=207  Identities=7%  Similarity=-0.089  Sum_probs=121.8

Q ss_pred             CcceEEEECCCCCeEEEEe-cCCcEEEEEEcCC---ccccccccccCCCCCCCCCeeEEEEeeCCCEE-EEeecCCeEEE
Q 022184           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGG---ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRI  138 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~v  138 (301)
                      ..+..++|++.+..|+.+. ..+.|+.+++.+.   .....+.      .........+++.+.+..| ++-...+.|.+
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i------~~~~~~P~glavD~~~g~LY~tD~~~~~I~v  479 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  479 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC------CSCC--CCCEECCCSSSBCEECCTTTSCEEE
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE------eCCCCCcceEEEEeeCCcEEEEeccCCeEEE
Confidence            4567899998777776654 4578888888752   1101100      0111234568888644444 44455688999


Q ss_pred             EeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-C-CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEE
Q 022184          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-D-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (301)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (301)
                      +++........+.........++++|.+.+|+.+.. . +.|..+++.... ...+....-.....|+|+|++..+|   
T Consensus       480 ~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY---  555 (699)
T 1n7d_A          480 ADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLY---  555 (699)
T ss_dssp             EBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEE---
T ss_pred             EecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEE---
Confidence            998755433222222345678899997665554442 2 678888775433 2223222223467899999887643   


Q ss_pred             EEEeCCcceEEEEEccCceEeeeee--ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          217 TVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       217 ~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                       ++-...+.|..+|+..........  ........+++..+ .++++....+.|..++..+++.+..+
T Consensus       556 -~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          556 -WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             -EEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             -EEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence             445667889999987533222221  11123445666554 44445556689999999888776655

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.59  E-value=0.00011  Score=60.93  Aligned_cols=215  Identities=9%  Similarity=-0.028  Sum_probs=118.7

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC----c-EEEEEEcCCccccccccccCCCCCCC
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG----G-CKLFEVYGGATDINLLAKKMPPLQDA  112 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~----~-i~~w~~~~~~~~~~~~~~~~~~~~~~  112 (301)
                      +|+.+++....+..       +......+..++++++|+ |+.+...+    . +...+..........       +...
T Consensus       163 ~I~~id~~~g~v~~-------~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~-------~~~~  227 (433)
T 4hw6_A          163 AFRHVDFVNQYVDI-------KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLS-------LCNA  227 (433)
T ss_dssp             CEEEEETTTTEEEE-------ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEE-------EEEC
T ss_pred             CEEEEECCCCEEEE-------eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccc-------cccc
Confidence            56666664443321       112345688999999999 55444321    1 222222111110000       0112


Q ss_pred             CCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceeccccc--CCccEEEEEecCCCcEEEE-EeCCCcEEEEeCC--CC
Q 022184          113 GPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLAT-TSTDGSARIWKTE--DG  186 (301)
Q Consensus       113 ~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~--~~  186 (301)
                      .....++++| ++.+.++-..++.|+.+|..++.....+..  ....-..++|+|+++.|+. -...+.|+.++..  ++
T Consensus       228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~  307 (433)
T 4hw6_A          228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETG  307 (433)
T ss_dssp             SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTC
T ss_pred             CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCc
Confidence            3456788999 666555555678899999876654222211  1122346999999985544 4456789998765  23


Q ss_pred             ce--EEEEeecC--------------CCCeeEEEE---------ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          187 VA--WTFLTRNS--------------DEKIELCRF---------SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       187 ~~--~~~~~~~~--------------~~~v~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      ..  ...+....              -.....+++         .+++..     .++-.....|+.++. ++... .+.
T Consensus       308 ~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l-----yvaD~~n~~I~~~~~-~G~v~-t~~  380 (433)
T 4hw6_A          308 KLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF-----YFCDRDSHTVRVLTP-EGRVT-TYA  380 (433)
T ss_dssp             CBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE-----EEEETTTTEEEEECT-TSEEE-EEE
T ss_pred             ccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE-----EEEECCCCEEEEECC-CCCEE-EEE
Confidence            21  12222210              113567888         566653     355666788999885 44332 222


Q ss_pred             cc------------------CCCcEEEEEc-CCCCEEEEeeCCCcEEEEeCC
Q 022184          242 LL------------------RKPASVLSIS-LDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       242 ~~------------------~~~v~~~~~s-~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      +.                  -.....++++ ++|.++++=..+++|+.++++
T Consensus       381 G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          381 GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            11                  1236788999 566655555566778887764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.58  E-value=7.2e-06  Score=70.64  Aligned_cols=165  Identities=12%  Similarity=0.042  Sum_probs=105.8

Q ss_pred             EEEEeeCCCEEEEeecC----------------CeEEEEeCCCcceecccccCCc----------cEEEEEec-CCC---
Q 022184          117 CLSFSVDGSRFAAGGVD----------------GHLRIMHWPSLRIILDEPKAHK----------SVLDMDFS-LDS---  166 (301)
Q Consensus       117 ~~~~s~~~~~l~~~~~d----------------g~i~v~d~~~~~~~~~~~~~~~----------~i~~~~~~-~~~---  166 (301)
                      .+++.++..+++.+..+                +.|..+|.++++.+..+...+.          ++. +... .+|   
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            45666777777777654                3799999999988765543221          221 2222 467   


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEeecC------------CCCe--------------------------eEEEEccC
Q 022184          167 EFLATTSTDGSARIWKTEDGVAWTFLTRNS------------DEKI--------------------------ELCRFSKD  208 (301)
Q Consensus       167 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~~~v--------------------------~~~~~~~~  208 (301)
                      +.++.++.+|.+.++|.++++.+.......            ..++                          ..++++|+
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  403 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence            467778899999999999999887664221            1111                          24567777


Q ss_pred             CCcceEEE--------------------------EEE--eC------CcceEEEEEccCceEeeeeeccCCCcEEEEEcC
Q 022184          209 GTKPFLFC--------------------------TVQ--RG------DKALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (301)
Q Consensus       209 ~~~~~~~~--------------------------~~~--~~------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (301)
                      ...+|+..                          +..  .+      ..+.|..||+.+++.+-..... .+...-.+..
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~t  482 (599)
T 1w6s_A          404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMAT  482 (599)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEE
T ss_pred             CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEe
Confidence            66533211                          011  01      4588999999999876544322 2221111223


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          255 DGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       255 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      .+.+++.++.|+.++.||.++++++..+.
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            56678889999999999999999887664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.54  E-value=0.00028  Score=62.80  Aligned_cols=207  Identities=6%  Similarity=-0.112  Sum_probs=123.7

Q ss_pred             CCcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCcc---ccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEE
Q 022184           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGAT---DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLR  137 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~  137 (301)
                      ...+..++|++....|+.+. ..+.|+.+++.....   ...+..      ........|++.+.++.|+.+ ...+.|.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~  496 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------RDIQAPDGLAVDWIHSNIYWTDSVLGTVS  496 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC------SSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe------cCCCCcceeeeeecCCcEEEEecCCCeEE
Confidence            45678999998666555444 457788888765321   011110      022456789998877555554 4578999


Q ss_pred             EEeCCCcceecccccCCccEEEEEecCCCcEEEEEe-CC-CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      +.++........+.........|+++|.+.+|+... .. +.|...++..... ..+....-.....|++.+.+..+|  
T Consensus       497 v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~~LY--  573 (791)
T 3m0c_C          497 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLY--  573 (791)
T ss_dssp             EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEE--
T ss_pred             EEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCCceEEEEecCCCeEE--
Confidence            999875443222223334688999999765555544 22 6788888865444 333322334588999998887643  


Q ss_pred             EEEEeCCcceEEEEEccCceEeeeeecc--CCCcEEEEEcCCCCEEEEe-eCCCcEEEEeCCCceeeccc
Q 022184          216 CTVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~  282 (301)
                        ++-.....|..+|+............  -.....|++.  +..|+.+ ...+.|...+..+++.+..+
T Consensus       574 --waD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          574 --WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             --EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             --EEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence              34456678999998754433223221  1234556664  3355555 45578888887777554443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.52  E-value=3.7e-05  Score=60.80  Aligned_cols=191  Identities=14%  Similarity=0.192  Sum_probs=117.5

Q ss_pred             CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC----CCE--EEEee-c---CCeEEEEeCC-
Q 022184           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSR--FAAGG-V---DGHLRIMHWP-  142 (301)
Q Consensus        74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~--l~~~~-~---dg~i~v~d~~-  142 (301)
                      ....++.....+-+.+||+. ++....+        . .+.++.+..-|+    |+.  ++.++ .   +++|.+|++. 
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~-G~~l~~~--------~-~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp  108 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLD-GKMLHSY--------N-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETT-SCEEEEE--------C-CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred             CccEEEEEcCCCCEEEEcCC-CcEEEEc--------c-CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence            33456666677789999994 4432221        1 145666666663    322  33333 3   4789999773 


Q ss_pred             -Ccceeccccc------CC-ccEEEEEe--cCC-Cc-EEEEEeCCCcEEEEeCC-------CCceEEEEeecCCCCeeEE
Q 022184          143 -SLRIILDEPK------AH-KSVLDMDF--SLD-SE-FLATTSTDGSARIWKTE-------DGVAWTFLTRNSDEKIELC  203 (301)
Q Consensus       143 -~~~~~~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~v~~~  203 (301)
                       +++ +..+..      .. ..+..+++  +|. ++ ++++...+|.+..|++.       +.+.++.+...  ..+..|
T Consensus       109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~Egc  185 (355)
T 3amr_A          109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGM  185 (355)
T ss_dssp             TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEE
T ss_pred             CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcceE
Confidence             332 333311      11 45677888  674 44 67778888999999883       33556666644  358899


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEcc-----CceEeeeee--ccCCCcEEEEE--cCCCC-EEEEee-CCCcEEEEe
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDIS-----TWNKIGHKR--LLRKPASVLSI--SLDGK-YLAMGS-KDGDICVVD  272 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-----~~~~~~~~~--~~~~~v~~~~~--s~~~~-~l~~~~-~d~~i~i~~  272 (301)
                      ...+....     ++.+.++.-|..||.+     +.+.+....  .....+..|++  .++++ +|++++ .++.+.+||
T Consensus       186 vvDd~~g~-----Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          186 AADDEYGR-----LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             EEETTTTE-----EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             EEcCCCCe-----EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            99988776     5666777667777755     334443332  12246788888  45565 677666 567899999


Q ss_pred             CC-Cceeeccc
Q 022184          273 VK-KMEINHWS  282 (301)
Q Consensus       273 ~~-~~~~~~~~  282 (301)
                      .+ +.+.+..+
T Consensus       261 r~~~~~~vg~f  271 (355)
T 3amr_A          261 RQGKNKYVADF  271 (355)
T ss_dssp             SSTTCCEEEEE
T ss_pred             CCCCCcEEEEE
Confidence            97 55555444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.51  E-value=3.5e-06  Score=73.92  Aligned_cols=198  Identities=10%  Similarity=0.069  Sum_probs=119.6

Q ss_pred             CCeEEEEecCCcEEEEEEcCCccccccccccCCCC--CCC-CCe-eEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc
Q 022184           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL--QDA-GPQ-KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (301)
Q Consensus        75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~--~~~-~~v-~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  150 (301)
                      +..+++++.++.|.-+|..+++...+.........  ... ..+ ..+.+  .+..+++++.|+.|..+|..+|+.+.+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            45666667778888888877776544322110000  000 000 11222  3557888888999999999999987665


Q ss_pred             ccCCc-cEEEEEecC---CCcEEEEEeC------CCcEEEEeCCCCceEEEEeecCCC----------------------
Q 022184          151 PKAHK-SVLDMDFSL---DSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDE----------------------  198 (301)
Q Consensus       151 ~~~~~-~i~~~~~~~---~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~----------------------  198 (301)
                      ..... ....+.-.|   ++ .++.+..      ++.|..+|.++|+.+-.+......                      
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~  222 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             ccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence            43210 000111111   34 4444432      589999999999998777531100                      


Q ss_pred             --------CeeEEEEccCCCcceEEEEEEeCCcc-------------------eEEEEEccCceEeeeeecc--C-----
Q 022184          199 --------KIELCRFSKDGTKPFLFCTVQRGDKA-------------------LLAVYDISTWNKIGHKRLL--R-----  244 (301)
Q Consensus       199 --------~v~~~~~~~~~~~~~~~~~~~~~~~~-------------------~i~~~d~~~~~~~~~~~~~--~-----  244 (301)
                              ....+++.|+...     ++.+..++                   .|..+|.++++.+-.+...  .     
T Consensus       223 w~~~~gg~~w~~~a~d~~~~~-----vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~  297 (668)
T 1kv9_A          223 WKLGGGGTVWDSMAYDPELDL-----LYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT  297 (668)
T ss_dssp             HHHCEECCCCSCEEEETTTTE-----EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             eeeCCCCccccceEEcCCCCE-----EEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence                    0124678887775     33344443                   4999999999887555432  1     


Q ss_pred             --CCcEEEEEcCCCC---EEEEeeCCCcEEEEeCCCceeec
Q 022184          245 --KPASVLSISLDGK---YLAMGSKDGDICVVDVKKMEINH  280 (301)
Q Consensus       245 --~~v~~~~~s~~~~---~l~~~~~d~~i~i~~~~~~~~~~  280 (301)
                        .+.....+..+|+   .++.++.+|.++++|..+++++.
T Consensus       298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence              2222223334665   78999999999999999998873

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.48  E-value=1.2e-05  Score=70.51  Aligned_cols=224  Identities=11%  Similarity=0.051  Sum_probs=117.9

Q ss_pred             ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe-cC-----CcEEEEEE
Q 022184           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN-----GGCKLFEV   92 (301)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d-----~~i~~w~~   92 (301)
                      +.++++|+...     +  .++.||+....+...+.    +.. ...-.+++..++++.++.|+ .+     ..+.+||.
T Consensus       254 g~lyv~GG~~~-----~--~v~~yd~~t~~W~~~~~----~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          254 GQIVVTGGNDA-----K--KTSLYDSSSDSWIPGPD----MQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             SCEEEECSSST-----T--CEEEEEGGGTEEEECCC----CSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             CCEEEeCCCCC-----C--ceEEecCcCCceeECCC----CCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence            45667766422     2  46666666666544321    111 11123456667899888888 34     56899998


Q ss_pred             cCCcccccccc--ccCCCCCCCCCeeEEEEeeCCCEEEEeecC---------CeEEEEeCCCcceecccccCC-------
Q 022184           93 YGGATDINLLA--KKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------GHLRIMHWPSLRIILDEPKAH-------  154 (301)
Q Consensus        93 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~-------  154 (301)
                      .+..-......  .......+.     ..+..++..++.++.+         ..+..||..+...........       
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~~~-----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~  396 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTADKQ-----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP  396 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTT-----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred             CCCcceeCCCcccccccccccc-----ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCC
Confidence            76543211000  000000000     1122344444444433         456788877654322111111       


Q ss_pred             --ccEEEEEecC-CCcEEEEEeCCC-----------cEEEEeCCCCceEEEE--eecCCCCeeEEEEccCCCcceEEEEE
Q 022184          155 --KSVLDMDFSL-DSEFLATTSTDG-----------SARIWKTEDGVAWTFL--TRNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       155 --~~i~~~~~~~-~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                        ..-.++.+.. ++++++.|+.++           .+.+||..+.......  ..+....-.++...|+++.     ++
T Consensus       397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i-----~v  471 (656)
T 1k3i_A          397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGST-----FI  471 (656)
T ss_dssp             CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCE-----EE
T ss_pred             CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCE-----EE
Confidence              1223444443 778888887543           6788888776654432  2222222345567788875     44


Q ss_pred             EeCCc-----------ceEEEEEccCceEe--eeeeccCCCcEEEEEcCCCCEEEEeeC
Q 022184          219 QRGDK-----------ALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSK  264 (301)
Q Consensus       219 ~~~~~-----------~~i~~~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~  264 (301)
                      .++.+           ..+.+||..+.+-.  ..............+.|+++.++.|+.
T Consensus       472 ~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          472 TGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             ECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            55532           56899998775532  222222333445667799999999985

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.48  E-value=0.00012  Score=57.48  Aligned_cols=211  Identities=10%  Similarity=0.027  Sum_probs=126.3

Q ss_pred             ccccCCcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEE---eeCCCEEEEeec--
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF---SVDGSRFAAGGV--  132 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~--  132 (301)
                      +....-...+++|++....|..++ ..++|..|+...+...................+..+.|   .|+++++++...  
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            444455677899988666666665 68999999987543211111000000111124589999   688777765431  


Q ss_pred             -----------CCeEEEEeCC---Ccceecccc--c-----------CCccEEEEEecCCCcEEEEEeCC-CcEEEEeCC
Q 022184          133 -----------DGHLRIMHWP---SLRIILDEP--K-----------AHKSVLDMDFSLDSEFLATTSTD-GSARIWKTE  184 (301)
Q Consensus       133 -----------dg~i~v~d~~---~~~~~~~~~--~-----------~~~~i~~~~~~~~~~~l~~~~~d-~~i~i~d~~  184 (301)
                                 +..|..||+.   +++.+....  .           .......++..++|+..++++.. +.|...+..
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                       5779999998   776543221  1           11358899999999999999888 888888765


Q ss_pred             CCceEEEEeecC-----CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE--eeeee-cc---CCCcEEE-EE
Q 022184          185 DGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKR-LL---RKPASVL-SI  252 (301)
Q Consensus       185 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~-~~---~~~v~~~-~~  252 (301)
                      .. .+..+....     ....+.+++.|+|..     ++.....+.|..+|+.+...  +.... +.   -.....+ .-
T Consensus       168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~-----Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~  241 (334)
T 2p9w_A          168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNK-----LIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTV  241 (334)
T ss_dssp             SC-CEEEEEECCCCSSSCCSCSEEEEETTTTE-----EEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEE
T ss_pred             CC-EEeeeeecCCCcccccCcceEEEeCCCCE-----EEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccc
Confidence            44 333332111     112679999999987     34444499999999885322  11110 11   1223443 33


Q ss_pred             cCCCCE-EEEeeCCCcEEEEeCCC
Q 022184          253 SLDGKY-LAMGSKDGDICVVDVKK  275 (301)
Q Consensus       253 s~~~~~-l~~~~~d~~i~i~~~~~  275 (301)
                      -.+|+. +++....+.+.+.+.+.
T Consensus       242 ~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          242 PVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EETTEEEEEEEETTEEEEEECSST
T ss_pred             ccCCEEEEEEcCCCCEEEEECCCC
Confidence            346777 44445566666666554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.45  E-value=6.6e-05  Score=60.43  Aligned_cols=225  Identities=13%  Similarity=0.081  Sum_probs=116.9

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC---CCEEEEeec-C-----C
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV-D-----G  134 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~-d-----g  134 (301)
                      .....++|.|+|+.++ +..++.|++++  .+... ... ..............++|+|+   +..|+++.. .     +
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~-~~~-~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLS-TYA-ELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEE-EEE-ECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCcc-Eee-cceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            3577999999998554 45678898888  33321 111 10111123457899999998   555555543 2     6


Q ss_pred             eEEEEeCCCc-----ceecc-cc---cCCccEEEEEecCCCcEEEEEeCC-------------CcEEEEeCCCC------
Q 022184          135 HLRIMHWPSL-----RIILD-EP---KAHKSVLDMDFSLDSEFLATTSTD-------------GSARIWKTEDG------  186 (301)
Q Consensus       135 ~i~v~d~~~~-----~~~~~-~~---~~~~~i~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~------  186 (301)
                      .|..++...+     +.+.. +.   ........++|.|||.++++.+..             +.|.-++....      
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np  185 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP  185 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence            7878877643     11111 22   111133689999999766664321             44555554320      


Q ss_pred             ------ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc-------eEEEEEccC--------c--------eEe
Q 022184          187 ------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-------LLAVYDIST--------W--------NKI  237 (301)
Q Consensus       187 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~d~~~--------~--------~~~  237 (301)
                            .....+..... ....++|+|+...+|+   .-.+.+.       .|.+.....        +        .++
T Consensus       186 f~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v---~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~  261 (352)
T 2ism_A          186 FLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFS---SEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL  261 (352)
T ss_dssp             TTTCTTSCTTEEEECCS-EECCCEECTTTCCEEE---EEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred             ccCCCCCCccEEEEcCC-CcccEEEECCCCCEEE---EEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence                  11112222222 2678899994333232   2223232       243332111        0        011


Q ss_pred             eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee------eccccccccCccEEEEEEccCCC
Q 022184          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI------NHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~------~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..+ .+......++| .+|.++++.-..+.|...+++....      ...+. .. ...+..+++.|||.
T Consensus       262 ~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~-~~rp~~v~~~pdG~  327 (352)
T 2ism_A          262 YFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SG-FGRLREVQVGPDGA  327 (352)
T ss_dssp             EEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ES-SCCEEEEEECTTSC
T ss_pred             Eec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-cc-CCCeeEEEECCCCc
Confidence            111 11224566777 4666666655667788877764321      11111 12 35789999999984

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.45  E-value=1.8e-05  Score=65.52  Aligned_cols=152  Identities=13%  Similarity=0.077  Sum_probs=97.3

Q ss_pred             CeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC----cEEEEeCCCCc
Q 022184          114 PQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG----SARIWKTEDGV  187 (301)
Q Consensus       114 ~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~----~i~i~d~~~~~  187 (301)
                      ....++++| ++..|+++...+.|+.+|+..+... .+.........++|++++++|+.+.. ++    .+..++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            457899997 4556766665588999998776543 33334456889999999996655553 22    2333443 332


Q ss_pred             eE--EEEeecCCCCeeEEEEcc-CCCcceEEEEEEeCCcceEEEEEccCceEeeeeec-cCCCcEEEEEcCCCCEEEEe-
Q 022184          188 AW--TFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMG-  262 (301)
Q Consensus       188 ~~--~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-  262 (301)
                      ..  ..+..  ......++++| ++..     .++...++.|..+|...+........ .......++|+|+|++|+.+ 
T Consensus       216 ~~~~~~l~~--~~~p~giavdp~~g~l-----yv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          216 FKVITELTK--GQNCNGAETHPINGEL-----YFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             SCSEEEEEE--CSSCCCEEECTTTCCE-----EEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             eeeeeeecc--CCCceEEEEeCCCCEE-----EEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence            21  22322  12367889999 5553     34555678999999987654222222 12356889999999966555 


Q ss_pred             eCCCcEEEEeCC
Q 022184          263 SKDGDICVVDVK  274 (301)
Q Consensus       263 ~~d~~i~i~~~~  274 (301)
                      ...+.|..++..
T Consensus       289 ~~~~~I~~~~~d  300 (430)
T 3tc9_A          289 VNQHYILRSDYD  300 (430)
T ss_dssp             TTTTEEEEEEEE
T ss_pred             CCCCEEEEEeCC
Confidence            456789988765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.41  E-value=0.0004  Score=55.26  Aligned_cols=263  Identities=13%  Similarity=0.079  Sum_probs=131.4

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...+.++.+.++   ...+++|..       +  .++.....+..+.....   ........+.++.|++ +. +..++.
T Consensus        35 ~~~~~~v~~~~~---~~~~~~G~~-------g--~i~~s~DgG~tW~~~~~---~~~~~~~~~~~i~~~~-~~-~~~~g~   97 (327)
T 2xbg_A           35 TATILDMSFIDR---HHGWLVGVN-------A--TLMETRDGGQTWEPRTL---VLDHSDYRFNSVSFQG-NE-GWIVGE   97 (327)
T ss_dssp             SSCEEEEEESSS---SCEEEEETT-------T--EEEEESSTTSSCEECCC---CCSCCCCEEEEEEEET-TE-EEEEEE
T ss_pred             CCcEEEEEECCC---CcEEEEcCC-------C--eEEEeCCCCCCCeECCC---CCCCCCccEEEEEecC-Ce-EEEEEC
Confidence            456788887644   345555432       2  24444333333322110   0112244688899976 44 444455


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc-ccCCccEEEEEe
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PKAHKSVLDMDF  162 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~  162 (301)
                      ++.  ++....+........   ........+..+.+.+++..++.+ .++.|..- .+.++.-... ......+..+++
T Consensus        98 ~g~--i~~S~DgG~tW~~~~---~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~  170 (327)
T 2xbg_A           98 PPI--MLHTTDGGQSWSQIP---LDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR  170 (327)
T ss_dssp             TTE--EEEESSTTSSCEECC---CCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred             CCe--EEEECCCCCCceECc---cccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence            663  344433322222111   100122446778887777666555 45544321 1223221111 223457889999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      .|++.+++.+...+..+-.|- .++.-..+.......+..+.+.+++..      ...+.++.+.+.+...++.-.....
T Consensus       171 ~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~------~~~~~~G~~~~s~~D~G~tW~~~~~  243 (327)
T 2xbg_A          171 SPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRL------WMIVNGGKIAFSDPDNSENWGELLS  243 (327)
T ss_dssp             CTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCE------EEEETTTEEEEEETTEEEEECCCBC
T ss_pred             cCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCE------EEEeCCceEEEecCCCCCeeEeccC
Confidence            998887776654333333342 122222223333446888999998873      3445567777764332333222221


Q ss_pred             ----cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccc--cccCccEEEEEEccCC
Q 022184          243 ----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSIALVEFCPTQ  300 (301)
Q Consensus       243 ----~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~~~~~v~~~~~spdg  300 (301)
                          ....+..+.+.+++..++++. ++.| ++..+.++.-..+..  .. ...+.++.|.+++
T Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~-~~~~~~v~~~~~~  304 (327)
T 2xbg_A          244 PLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKV-PSNFYKILFFSPD  304 (327)
T ss_dssp             TTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTS-SSCCCEEEEEETT
T ss_pred             CcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCC-CCCeEEEEEECCC
Confidence                123578899998887766654 6666 344444432221111  11 2456677775443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.39  E-value=0.0002  Score=62.20  Aligned_cols=208  Identities=8%  Similarity=-0.095  Sum_probs=122.6

Q ss_pred             CCcceEEEECCCCCeEEEEec-CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEEEe
Q 022184           63 EGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMH  140 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d  140 (301)
                      -..+..++|++.+..|..+.. .+.|+.+++++.........      ........+++.+.+..|+.+ ...+.|.+.+
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~------~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~  112 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSN  112 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe------CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence            345789999997777766554 57788888765422111111      122467899999965555554 4578999999


Q ss_pred             CCCcceecccccCCccEEEEEecCCCcEEEEEeC--CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      +............-.....|++.|.+..|+....  .+.|...++..... ..+....-.....+++++++..+|    +
T Consensus       113 ~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~~P~Glald~~~~~LY----~  187 (619)
T 3s94_A          113 LDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLY----W  187 (619)
T ss_dssp             TTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEE----E
T ss_pred             CCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-EEEEeCCCCCCcEEEEEccCCEEE----E
Confidence            8754332222233345778999997555555443  35677777754333 333222334578999999877643    4


Q ss_pred             EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      +-...+.|..+|+..................+++.++ ..+.+-...+.|...|..+++....+
T Consensus       188 aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          188 ADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             EETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             EeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence            4566778999998765443222212233456777665 34444445678999998877654433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.38  E-value=0.00029  Score=56.33  Aligned_cols=202  Identities=12%  Similarity=0.103  Sum_probs=114.8

Q ss_pred             CcceEEEECCCCCeEEEEe------------cCCcEEEEEEcCCccccccccccCC-CCCCCCCeeEEEEee--CCC-EE
Q 022184           64 GDPMTIAVNPSGDDFVCST------------TNGGCKLFEVYGGATDINLLAKKMP-PLQDAGPQKCLSFSV--DGS-RF  127 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~------------~d~~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~--~~~-~l  127 (301)
                      .....+...|+|..+++++            .+|.|.++|.++...........-. .....-....+.+.+  ++. +|
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            3456777888876555542            6899999998743221111111000 111223567788776  454 34


Q ss_pred             EEee-c--CCeEEEEeCCCcce----ecccccC-CccEEEEEecCCCcEEEEEeC-----------------CCcEEEEe
Q 022184          128 AAGG-V--DGHLRIMHWPSLRI----ILDEPKA-HKSVLDMDFSLDSEFLATTST-----------------DGSARIWK  182 (301)
Q Consensus       128 ~~~~-~--dg~i~v~d~~~~~~----~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-----------------d~~i~i~d  182 (301)
                      +++. .  +..|.+|++.....    +..+... -....++.+.++|.++++...                 .+.|..+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            4442 2  46788887754321    1122221 136789999999997777541                 23444454


Q ss_pred             CCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC-ceE--eeeeeccCCCcEEEEEcC-CCCE
Q 022184          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISL-DGKY  258 (301)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~  258 (301)
                      .  ++.. .+...- ...+.++|+||++.+|    ++.+..+.|..|++.. ++.  .+.+ ........+++++ +|++
T Consensus       210 ~--~~~~-~~~~~l-~~pNGia~spDg~~lY----vadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          210 P--NDVR-VVAEGF-DFANGINISPDGKYVY----IAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             T--TCCE-EEEEEE-SSEEEEEECTTSSEEE----EEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred             C--CeEE-EeecCC-cccCcceECCCCCEEE----EEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcE
Confidence            4  3332 222222 2478999999999743    4455678999999863 222  1223 2245567899999 5988


Q ss_pred             EEEeeCC-CcEEEEeCC
Q 022184          259 LAMGSKD-GDICVVDVK  274 (301)
Q Consensus       259 l~~~~~d-~~i~i~~~~  274 (301)
                      .+++..+ +.|..|+..
T Consensus       281 wva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          281 WVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEESCHHHHHSCCTT
T ss_pred             EEEecCCceEEEEECCC
Confidence            7766544 345555544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.36  E-value=0.00035  Score=62.17  Aligned_cols=188  Identities=9%  Similarity=-0.050  Sum_probs=113.7

Q ss_pred             eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEEEeCCCc----ceecccc
Q 022184           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSL----RIILDEP  151 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~----~~~~~~~  151 (301)
                      +|+.+. ...|+..++.......        .......+..++|++....|+.. ...+.|+.+++...    .....+.
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~--------l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~  467 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTS--------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  467 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEE--------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             cccccc-ccceeEeeccCCccee--------eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence            444443 3447777665443211        11123567889999855555544 45678988888642    1222222


Q ss_pred             cCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          152 KAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       152 ~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                      ........|++.+.++ ++++-...+.|.+.++........+. ........|++.|.+.++|+   +-.+....|...+
T Consensus       468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYw---tD~g~~~~I~~~~  543 (791)
T 3m0c_C          468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYW---TDWGTPAKIKKGG  543 (791)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEE---EECSSSCEEEEEE
T ss_pred             cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEE---ecCCCCCeEEEEe
Confidence            2334567899988665 45555567899999997555433333 33345889999998776432   2223347899999


Q ss_pred             ccCceEeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCce
Q 022184          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKME  277 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~  277 (301)
                      +............-.....|++++.+..|+.+. ..+.|..+++....
T Consensus       544 ~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            876544333333335688999998777777664 45679999986543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.36  E-value=9.1e-05  Score=58.10  Aligned_cols=156  Identities=9%  Similarity=-0.004  Sum_probs=102.2

Q ss_pred             eeEEEEeeCCCEEEEee-cCCeEEEEeCCCcceec-cccc----CC--ccEEEEEe---cCCCcEEEEEe----------
Q 022184          115 QKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIIL-DEPK----AH--KSVLDMDF---SLDSEFLATTS----------  173 (301)
Q Consensus       115 v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~-~~~~----~~--~~i~~~~~---~~~~~~l~~~~----------  173 (301)
                      ..+++|++....|..++ ..+.|..|+...+.... .+..    ..  ..+..+.|   .|+++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            35689988555565555 78999999987553221 2222    11  14689999   68887777543          


Q ss_pred             ---CCCcEEEEeCC---CCceEEEEeec------------CCCCeeEEEEccCCCcceEEEEEEeCCc-ceEEEEEccCc
Q 022184          174 ---TDGSARIWKTE---DGVAWTFLTRN------------SDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTW  234 (301)
Q Consensus       174 ---~d~~i~i~d~~---~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~  234 (301)
                         .+..+..||+.   +++.+......            .......++..++|+.     -++.+.. +.|...+....
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna-----YVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS-----YVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE-----EEEEEESSCEEEEECTTSC
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE-----EEeCCCCCCeEEEEeCCCC
Confidence               25779999999   77766555321            1124789999999995     2334444 66776666543


Q ss_pred             eEeeee-----eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          235 NKIGHK-----RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       235 ~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      ......     .......+.++++|+|+.|++....|.+..+|+..
T Consensus       170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            221111     11122467999999999888887799999999874

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=0.00062  Score=56.89  Aligned_cols=252  Identities=6%  Similarity=-0.123  Sum_probs=133.1

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEE-------CCCCCeEE
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-------NPSGDDFV   79 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~l~   79 (301)
                      ...++|.|. ...++.++-.        ..-.|+.++.....+...  .. .-......+..++|       ++++++|+
T Consensus       141 p~~la~dp~-~~~~Lyv~~~--------~~~~i~~ID~~~~~v~~l--~~-~~~~~~~~p~~ia~~~~~~~~d~~G~~ly  208 (496)
T 3kya_A          141 NGRLAFDPL-NKDHLYICYD--------GHKAIQLIDLKNRMLSSP--LN-INTIPTNRIRSIAFNKKIEGYADEAEYMI  208 (496)
T ss_dssp             EEEEEEETT-EEEEEEEEEE--------TEEEEEEEETTTTEEEEE--EC-CTTSSCSBEEEEEECCCBTTTBCTTCEEE
T ss_pred             CCEEEEccC-CCCEEEEEEC--------CCCeEEEEECCCCEEEEE--Ec-cCccccCCCcEEEEeecccccCCCCCEEE
Confidence            456777752 1134444422        122577777666554321  00 01112346899999       99999777


Q ss_pred             EEecCC-c------EEEEEEcC-CccccccccccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCeEEEEeCC-------C
Q 022184           80 CSTTNG-G------CKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWP-------S  143 (301)
Q Consensus        80 ~~~~d~-~------i~~w~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v~d~~-------~  143 (301)
                      ++...+ .      |.+++... +..............   .....++++|+ +.++++-..++.|..+|+.       +
T Consensus       209 vad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~---~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t  285 (496)
T 3kya_A          209 VAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY---KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN  285 (496)
T ss_dssp             EEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE---SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT
T ss_pred             EEeCCCCCcccCceEEEEecCCCCceeecccceeeccC---CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC
Confidence            766554 2      55555333 121100000001111   23457788994 5555555677889999987       4


Q ss_pred             cce-----------eccc--ccCCccEEEEEecCCCcEEEEE-eCCCcEEEEeCC--CCce--EEEEeec--CC------
Q 022184          144 LRI-----------ILDE--PKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTE--DGVA--WTFLTRN--SD------  197 (301)
Q Consensus       144 ~~~-----------~~~~--~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~--~~~~--~~~~~~~--~~------  197 (301)
                      +..           ...+  .........++|+|+++.|+.+ .....|+.++..  .+..  ...+.+.  ..      
T Consensus       286 g~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~  365 (496)
T 3kya_A          286 GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDV  365 (496)
T ss_dssp             TCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCB
T ss_pred             ceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCc
Confidence            432           0011  1122345789999999954444 466788886653  3321  1223221  00      


Q ss_pred             ------CCee-EEEEc-------cCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc--------------------
Q 022184          198 ------EKIE-LCRFS-------KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL--------------------  243 (301)
Q Consensus       198 ------~~v~-~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--------------------  243 (301)
                            .... .+...       +++..     .++-....+|+.++. ++.. ..+.+.                    
T Consensus       366 ~~~a~f~~P~~gv~vd~~~~~~~~~g~l-----yVaD~~N~rIr~i~~-~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~  438 (496)
T 3kya_A          366 GTEARMNNPCQGVFVKNPDYTGEEEYDF-----YFVDRLNFCVRKVTP-EGIV-STYAGRGASTSLADGNQWGTDDGDLR  438 (496)
T ss_dssp             GGGCBCSSEEEEEEEECTTCCSSCCEEE-----EEEEGGGTEEEEECT-TCBE-EEEEESCTTHHHHHSCSCCCCCEETT
T ss_pred             ccccccCCCeEEEEEccccccccCCCeE-----EEEECCCCEEEEEeC-CCCE-EEEecccccccccCccccccCCCCch
Confidence                  1133 34443       33432     355566778888884 4432 222211                    


Q ss_pred             ----CCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeec
Q 022184          244 ----RKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINH  280 (301)
Q Consensus       244 ----~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~~  280 (301)
                          -.....|+++++ |.++++=..+.+|+.++++......
T Consensus       439 ~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          439 EVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             TTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             hhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence                023578999997 6666655667889999987655443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.35  E-value=0.00044  Score=54.75  Aligned_cols=164  Identities=6%  Similarity=-0.066  Sum_probs=99.7

Q ss_pred             CcceEEEECCCCCeEEEE-ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee--cCCeEEEEe
Q 022184           64 GDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMH  140 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~v~d  140 (301)
                      ..+..+++.+.+..|+.+ ...+.|.+++++..... .+..      ........+++.|.+..|+.+.  ..+.|...+
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~~------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~  151 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLFW------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAG  151 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEC------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-EEEe------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence            457789998755555544 45678999887654321 1110      1234568999999766666555  257888888


Q ss_pred             CCCcceecccccCCccEEEEEecCCCcEEEEE-eCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEE
Q 022184          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                      +............-.....++++|++..|+.+ +..+.|..+|+..... ..+..........+++..+  .+    ..+
T Consensus       152 ~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~~--~l----ywt  224 (318)
T 3sov_A          152 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFED--IL----YWT  224 (318)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEETT--EE----EEE
T ss_pred             cCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeCC--EE----EEE
Confidence            76432221122222456899999976655554 4567899999865433 3332222234667777533  32    355


Q ss_pred             eCCcceEEEEEccCceEeeeee
Q 022184          220 RGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       220 ~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      ....+.|..+|..+++....+.
T Consensus       225 d~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          225 DWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             ETTTTEEEEEETTTCCSCEEEE
T ss_pred             ecCCCeEEEEECCCCCceEEEe
Confidence            6677889999987776554443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.34  E-value=4.4e-05  Score=65.79  Aligned_cols=187  Identities=11%  Similarity=0.119  Sum_probs=111.9

Q ss_pred             EEEECCCCCeEEEEec--------------------C----CcEEEEEEcCCccccccccccCCC--CCC-CCCeeEEEE
Q 022184           68 TIAVNPSGDDFVCSTT--------------------N----GGCKLFEVYGGATDINLLAKKMPP--LQD-AGPQKCLSF  120 (301)
Q Consensus        68 ~~~~~~~~~~l~~~~~--------------------d----~~i~~w~~~~~~~~~~~~~~~~~~--~~~-~~~v~~~~~  120 (301)
                      .++++|+...++.+..                    |    +.|..+|.++++............  +.. ..++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4667777777776553                    2    578888888887765543211110  001 11221 222


Q ss_pred             e-eCCC---EEEEeecCCeEEEEeCCCcceecccccCC-------------cc---------------------------
Q 022184          121 S-VDGS---RFAAGGVDGHLRIMHWPSLRIILDEPKAH-------------KS---------------------------  156 (301)
Q Consensus       121 s-~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-------------~~---------------------------  156 (301)
                      . .+|+   .++.++.+|.++++|.++++.+.......             .+                           
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            2 3674   67888999999999999988764432211             00                           


Q ss_pred             -----EEEEEecCCCcEEEEEe---------------------------------CCCcEEEEeCCCCceEEEEeecCCC
Q 022184          157 -----VLDMDFSLDSEFLATTS---------------------------------TDGSARIWKTEDGVAWTFLTRNSDE  198 (301)
Q Consensus       157 -----i~~~~~~~~~~~l~~~~---------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~  198 (301)
                           -..++++|+...+++..                                 .+|.|..||+.+++.+-+...... 
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~-  487 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-  487 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC-
Confidence                 01345666555544432                                 257899999999998776654322 


Q ss_pred             CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCC-cEEEEEcCCCC-EEEEe
Q 022184          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDGK-YLAMG  262 (301)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~-~l~~~  262 (301)
                       ...-.....+..     ++.++.|+.++.||.++++.+-+++..... ..-+.|..+|+ |+++.
T Consensus       488 -~~~g~~~taggl-----vf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          488 -LWAGVLATAGNL-----VFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             -CCSCCEEETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             -CcccceEeCCCE-----EEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence             222122223444     455788999999999999998777654332 22366667886 44443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.34  E-value=9.2e-05  Score=63.69  Aligned_cols=186  Identities=13%  Similarity=0.007  Sum_probs=111.6

Q ss_pred             EEEECCCCCeEEEEecC----------------CcEEEEEEcCCccccccccccCC--CCC-CCCCeeEEEEeeCCC---
Q 022184           68 TIAVNPSGDDFVCSTTN----------------GGCKLFEVYGGATDINLLAKKMP--PLQ-DAGPQKCLSFSVDGS---  125 (301)
Q Consensus        68 ~~~~~~~~~~l~~~~~d----------------~~i~~w~~~~~~~~~~~~~~~~~--~~~-~~~~v~~~~~s~~~~---  125 (301)
                      .+++.++...++.+..+                +.|..+|.++++...........  ... ...++ -+...++|+   
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEE
Confidence            35666766666655432                25888888887765444321100  000 11222 233335774   


Q ss_pred             EEEEeecCCeEEEEeCCCcceecccccCC-------------ccE--------------------------EEEEecCCC
Q 022184          126 RFAAGGVDGHLRIMHWPSLRIILDEPKAH-------------KSV--------------------------LDMDFSLDS  166 (301)
Q Consensus       126 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~  166 (301)
                      .++.++.+|.++++|..+++.+.......             .++                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            57778889999999999988765432111             111                          235778877


Q ss_pred             cEEEEEe-------------------------------------CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCC
Q 022184          167 EFLATTS-------------------------------------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (301)
Q Consensus       167 ~~l~~~~-------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (301)
                      .+++...                                     .++.|..||+.+++.+-.+.....  +....+...+
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~--~~~~~~~t~g  475 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA--AWGGTLYTKG  475 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC--CCSBCEEETT
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC--ccceeEEECC
Confidence            7666543                                     347899999999998877764322  2232333344


Q ss_pred             CcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCC-cEEEEEcCCCCEEEE
Q 022184          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDGKYLAM  261 (301)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~  261 (301)
                      ..     ++.++.++.|+.+|.++++.+..+...... ...+.+..+|+.++.
T Consensus       476 g~-----v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          476 GL-----VWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             TE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CE-----EEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            44     455788999999999999988776644321 223445577764443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.34  E-value=0.00046  Score=55.54  Aligned_cols=227  Identities=12%  Similarity=0.007  Sum_probs=119.8

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC---CCEEEEeec----C---
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV----D---  133 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~----d---  133 (301)
                      .....|+|.|+|+. +++..++.|++++. .+.  ..+.. .............++++|+   +..|+++..    +   
T Consensus        29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~-~G~--~~~~~-~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGRY-LVTERPGRLVLISP-SGK--KLVAS-FDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTEE-EEEETTTEEEEECS-SCE--EEEEE-CCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCeE-EEEeCCCEEEEEeC-CCc--eEeec-cceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            45789999999974 44566788888863 332  11111 0111123456889999997   555555443    2   


Q ss_pred             -CeEEEEeCCCc-------ceecc-cccC-CccEEEEEecCCCcEEEEEeCC-------------CcEEEEeCCCCc---
Q 022184          134 -GHLRIMHWPSL-------RIILD-EPKA-HKSVLDMDFSLDSEFLATTSTD-------------GSARIWKTEDGV---  187 (301)
Q Consensus       134 -g~i~v~d~~~~-------~~~~~-~~~~-~~~i~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~---  187 (301)
                       ..|..|+....       +.+.. +... ......++|.|||.++++.+..             +.|.-++....-   
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~  183 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD  183 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence             56777776543       11111 2111 1124679999999877664431             345555543210   


Q ss_pred             ----eEEEEeecCCCCeeEEEEcc-CCCcceEEEEEEeCCc--ceEEEEEccC--------c--------eEeeeeeccC
Q 022184          188 ----AWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDK--ALLAVYDIST--------W--------NKIGHKRLLR  244 (301)
Q Consensus       188 ----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~--~~i~~~d~~~--------~--------~~~~~~~~~~  244 (301)
                          ....+..... ....++|+| ++.. |+   .-.+.+  ..|.+.....        +        .++..+....
T Consensus       184 npf~~~~i~a~G~r-np~Gla~d~~~g~l-~v---~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~  258 (354)
T 3a9g_A          184 NPFPNSPIWSYGHR-NPQGIDWHRASGVM-VA---TEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET  258 (354)
T ss_dssp             SSSTTCCEEEECCS-CCCEEEECTTTCCE-EE---EECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred             CCCCCCcEEEEccC-CcceEEEeCCCCCE-EE---EecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence                0122222222 267899999 5552 21   222222  1233332111        0        0111111122


Q ss_pred             CCcEEEEEc-------CCCCEEEEeeCCCcEEEEeCCCc-eee--ccccccccCccEEEEEEccCCC
Q 022184          245 KPASVLSIS-------LDGKYLAMGSKDGDICVVDVKKM-EIN--HWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       245 ~~v~~~~~s-------~~~~~l~~~~~d~~i~i~~~~~~-~~~--~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .....++|.       .+|.++++.-..+.|...++... +..  ..+.... ...+..+++.|||.
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~~rp~~v~~~pDG~  324 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV-FGRLRDVVIDDDGG  324 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT-SCCEEEEEECTTSC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC-CCCeeEEEECCCCc
Confidence            356778883       56777776666778988888753 221  1222222 45789999999984

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.30  E-value=0.00033  Score=55.45  Aligned_cols=166  Identities=11%  Similarity=0.187  Sum_probs=105.4

Q ss_pred             CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecC----CCcE--E-EEEe-C--CCcEEEEeCC--CCceEE
Q 022184          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL----DSEF--L-ATTS-T--DGSARIWKTE--DGVAWT  190 (301)
Q Consensus       123 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~----~~~~--l-~~~~-~--d~~i~i~d~~--~~~~~~  190 (301)
                      ...+++.....+-+.+||+ +++.+..+..  +.+..+..-|    .|+.  + ++.. .  +++|.+|++.  +++ +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            3456666667788999999 7887776643  4566666655    2332  3 3333 3  5789999773  333 44


Q ss_pred             EEee---c--CC-CCeeEEEE--ccCCCcceEEEEEEeCCcceEEEEEcc-------CceEeeeeeccCCCcEEEEEcCC
Q 022184          191 FLTR---N--SD-EKIELCRF--SKDGTKPFLFCTVQRGDKALLAVYDIS-------TWNKIGHKRLLRKPASVLSISLD  255 (301)
Q Consensus       191 ~~~~---~--~~-~~v~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~d~~-------~~~~~~~~~~~~~~v~~~~~s~~  255 (301)
                      .+..   +  .. ..+..+++  +|.....+   ++....++.+..|++.       +.+.++.+.. ...+..+...+.
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~y---afV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~  190 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYY---AMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE  190 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEE---EEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEE---EEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence            4421   1  11 34677777  77544323   4566777999999983       3355666654 456888999998


Q ss_pred             CCEEEEeeCCCcEEEEeCC-----CceeeccccccccCccEEEEEE
Q 022184          256 GKYLAMGSKDGDICVVDVK-----KMEINHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       256 ~~~l~~~~~d~~i~i~~~~-----~~~~~~~~~~~~~~~~v~~~~~  296 (301)
                      ...|+.+-++.-|..|+.+     +++.+..+...+....+..|+.
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai  236 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTI  236 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEE
Confidence            8999999998777777755     3445544322332346777777

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.24  E-value=0.00013  Score=62.85  Aligned_cols=203  Identities=9%  Similarity=0.011  Sum_probs=116.2

Q ss_pred             CCeEEEEec-CCcEEEEEE-cCCccccccccccCCCCC----CCCCeeEEEEeeCCCE----EEEeecCCeEEEEeCCCc
Q 022184           75 GDDFVCSTT-NGGCKLFEV-YGGATDINLLAKKMPPLQ----DAGPQKCLSFSVDGSR----FAAGGVDGHLRIMHWPSL  144 (301)
Q Consensus        75 ~~~l~~~~~-d~~i~~w~~-~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~----l~~~~~dg~i~v~d~~~~  144 (301)
                      +..+++++. ++.|.-+|. ++++...+..........    .......++++|.+..    ++.++.|+.|.-+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            345555555 677777787 666654443221100000    0001123455554444    888888999999999999


Q ss_pred             ceecccccCCc----cEEE-EEecCCCcEEEEEe------CCCcEEEEeCCCCceEEEEeecCCCC--------------
Q 022184          145 RIILDEPKAHK----SVLD-MDFSLDSEFLATTS------TDGSARIWKTEDGVAWTFLTRNSDEK--------------  199 (301)
Q Consensus       145 ~~~~~~~~~~~----~i~~-~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~--------------  199 (301)
                      +.+.+......    .+.+ .... ++ .++.++      .++.|+.+|.++|+.+-.+.......              
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            88765432210    1111 1111 44 444444      37999999999999887765332110              


Q ss_pred             ----------------------e-eEEEEccCCCcceEEEEEEeCC--------------cceEEEEEccCceEeeeeec
Q 022184          200 ----------------------I-ELCRFSKDGTKPFLFCTVQRGD--------------KALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       200 ----------------------v-~~~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~d~~~~~~~~~~~~  242 (301)
                                            + ..+++.+....+|   +.++..              .+.|..+|.++++.+-.+..
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy---~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~  296 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY---FGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK  296 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE---EECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEE---EeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence                                  0 1244555555422   122211              24799999999988755543


Q ss_pred             cCC---------CcEEEEEc-CCC---CEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          243 LRK---------PASVLSIS-LDG---KYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       243 ~~~---------~v~~~~~s-~~~---~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      ...         ...-+... .+|   +.++.++.+|.++++|..+++++...
T Consensus       297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence            321         11112222 567   57788899999999999999877543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.20  E-value=0.00091  Score=52.38  Aligned_cols=237  Identities=13%  Similarity=0.076  Sum_probs=115.4

Q ss_pred             ccEEEecC-CccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC-----CcEEEEEE
Q 022184           19 VNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEV   92 (301)
Q Consensus        19 ~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----~~i~~w~~   92 (301)
                      ..+++.|+ ....   ...-.++.+++....+...+..    ......-..+.  .+++.++.|+.+     ..+.+||+
T Consensus        15 ~~i~~~GG~~~~~---~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~   85 (301)
T 2vpj_A           15 EVLLVVGGFGSQQ---SPIDVVEKYDPKTQEWSFLPSI----TRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDY   85 (301)
T ss_dssp             EEEEEECCEETTT---EECCCEEEEETTTTEEEECCCC----SSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEET
T ss_pred             CEEEEEeCccCCC---cceeEEEEEcCCCCeEEeCCCC----ChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEEC
Confidence            45777777 3221   1122466677766666443211    11111111222  256667777654     46888888


Q ss_pred             cCCcc-ccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC-----CeEEEEeCCCcceec--ccccCCccEEEEEecC
Q 022184           93 YGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSL  164 (301)
Q Consensus        93 ~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~  164 (301)
                      .+... .....    ..+.....-.+++ ..++++++.|+.+     ..+.+||+.+.+-..  .+.........+.+  
T Consensus        86 ~~~~~~~W~~~----~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--  158 (301)
T 2vpj_A           86 TADEDGVWYSV----APMNVRRGLAGAT-TLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--  158 (301)
T ss_dssp             TCCTTCCCEEE----CCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--
T ss_pred             CCCCCCeeEEC----CCCCCCccceeEE-EECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--
Confidence            76551 01111    1111111111222 2367777777653     368889987654321  12111111122222  


Q ss_pred             CCcEEEEEeCC-----CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCC-----cceEEEEEccCc
Q 022184          165 DSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTW  234 (301)
Q Consensus       165 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~d~~~~  234 (301)
                      +++.++.|+.+     ..+.+||+.+.+-...-..+....-..+.. -+++ +    .+.++.     ...+.+||+.+.
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-i----~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDH-I----YVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE-E----EEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCE-E----EEEeCCCCCcccceEEEEeCCCC
Confidence            67777777754     458899988775443321111111112222 2333 2    233443     256899999875


Q ss_pred             eEe--eeeeccCCCcEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCceee
Q 022184          235 NKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEIN  279 (301)
Q Consensus       235 ~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~i~~~~~~~~~  279 (301)
                      +-.  ............+.+  ++++++.|+.+     ..+.+||+.+.+..
T Consensus       233 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          233 SWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             cEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            432  222211222222333  67788888765     45889999876543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.18  E-value=0.0014  Score=52.11  Aligned_cols=191  Identities=10%  Similarity=0.083  Sum_probs=104.3

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC--
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW--  141 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~--  141 (301)
                      +.+..+.+.++++.++++ .++.  +|....+.........     .....+..+.+.|++.+++.+...+..+-.|-  
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~--v~~S~DgG~tW~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG  193 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGA--IYRTKDSGKNWQALVQ-----EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQ  193 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCC--EEEESSTTSSEEEEEC-----SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTC
T ss_pred             CCeEEEEEECCCCEEEEe-CCcc--EEEEcCCCCCCEEeec-----CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCC
Confidence            446778877766655554 4553  3444332222221111     12346788999998887776654443333342  


Q ss_pred             CCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec---CCCCeeEEEEccCCCcceEEEEE
Q 022184          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      .+.+.+.  ......+..+.+.++++.++ ++.+|.+++.+...++.-..+...   ....+..+.+.+++..      +
T Consensus       194 ~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~------~  264 (327)
T 2xbg_A          194 TAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV------W  264 (327)
T ss_dssp             SSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE------E
T ss_pred             CceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE------E
Confidence            2223221  12345788899999887554 456787777643334433333222   1224788899987763      3


Q ss_pred             EeCCcceEEEEEccCceEeeeee---ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          219 QRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                      ..+.++.| ++....++.-....   .....+..+.|.++++ +++++.+|.|.-++-
T Consensus       265 ~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          265 LAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             EEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             EEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            33446656 33333333222222   1235678888876555 556667887776653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=0.00066  Score=56.74  Aligned_cols=204  Identities=9%  Similarity=-0.029  Sum_probs=117.3

Q ss_pred             cceEEEECC-CCCeEEEEec-CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEE-------eeCCCEEEEeecCC-
Q 022184           65 DPMTIAVNP-SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-------SVDGSRFAAGGVDG-  134 (301)
Q Consensus        65 ~v~~~~~~~-~~~~l~~~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~~~~~l~~~~~dg-  134 (301)
                      ....|+|+| +...|+.+.. .+.|++.|++++........   . .........++|       +++++.|+++...+ 
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~---~-~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~  215 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI---N-TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG  215 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC---T-TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc---C-ccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence            366899998 3555555544 35677777776554221111   0 012346899999       99999777665543 


Q ss_pred             ------eEEEEeCCC-ccee-----cccccCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCC-------CCce------
Q 022184          135 ------HLRIMHWPS-LRII-----LDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTE-------DGVA------  188 (301)
Q Consensus       135 ------~i~v~d~~~-~~~~-----~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~-------~~~~------  188 (301)
                            .|.+++... +...     ..+. .......++++|++ .++++-..++.|..+|+.       ++..      
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                  266665333 2221     1111 11245678899954 455566677889999987       4543      


Q ss_pred             -----EEE-EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc--CceEe--eeeecc---C-----------
Q 022184          189 -----WTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNKI--GHKRLL---R-----------  244 (301)
Q Consensus       189 -----~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~--~~~~~~---~-----------  244 (301)
                           ... +..........++|+|+|+.+|    ++-.....|+.+|..  .+...  ..+.+.   .           
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lY----vaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~  370 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAY----FGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR  370 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEE----EEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEE----EEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence                 222 2222333468999999999532    455667788886653  32210  111111   0           


Q ss_pred             -CCcE-EEEEc-------CCCCEEEEeeCCCcEEEEeCCCcee
Q 022184          245 -KPAS-VLSIS-------LDGKYLAMGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       245 -~~v~-~~~~s-------~~~~~l~~~~~d~~i~i~~~~~~~~  278 (301)
                       .... .+...       +++.++++=..+.+|+.++ .++..
T Consensus       371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v  412 (496)
T 3kya_A          371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV  412 (496)
T ss_dssp             CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE
T ss_pred             cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE
Confidence             1234 45554       4566666666778899998 45543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.17  E-value=0.0015  Score=52.55  Aligned_cols=192  Identities=12%  Similarity=0.051  Sum_probs=95.1

Q ss_pred             CCcceEEEECCC---CCeEEEEec-C-----CcEEEEEEcCCccc--cccccccCCC-CCCCCCeeEEEEeeCCCEEEEe
Q 022184           63 EGDPMTIAVNPS---GDDFVCSTT-N-----GGCKLFEVYGGATD--INLLAKKMPP-LQDAGPQKCLSFSVDGSRFAAG  130 (301)
Q Consensus        63 ~~~v~~~~~~~~---~~~l~~~~~-d-----~~i~~w~~~~~~~~--~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~  130 (301)
                      ......++|+|+   +..|..+.. .     +.|..++.......  ..+... ... .........++|.|||.+.++.
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~-~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDG-IPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEE-ECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEe-CCCCCCCCcCCceEEECCCCCEEEEE
Confidence            456889999998   555554433 2     56778887643211  111111 110 0111123689999999766664


Q ss_pred             ec-------------CCeEEEEeCCCc------------ceecccccCCccEEEEEecC-CCcEEEEEeCCCcE------
Q 022184          131 GV-------------DGHLRIMHWPSL------------RIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSA------  178 (301)
Q Consensus       131 ~~-------------dg~i~v~d~~~~------------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i------  178 (301)
                      +.             .|.|.-++....            .....+.........++|+| +++++++-.....+      
T Consensus       153 G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~d  232 (352)
T 2ism_A          153 GEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHD  232 (352)
T ss_dssp             CCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCC
T ss_pred             CCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence            32             245666665421            00011111123467789999 56655543322221      


Q ss_pred             EEEeCCCCc------------------eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE----
Q 022184          179 RIWKTEDGV------------------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----  236 (301)
Q Consensus       179 ~i~d~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----  236 (301)
                      .+.-+..+.                  +...+  ........++| .+|..     .++.-..+.|...++.....    
T Consensus       233 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~--~~~~ap~G~~~-~~G~l-----~v~~~~~~~v~~v~~~~~~~~~~~  304 (352)
T 2ism_A          233 EVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW--PQGFPPGNLAF-FRGDL-----YVAGLRGQALLRLVLEGERGRWRV  304 (352)
T ss_dssp             EEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC--TTCCCEEEEEE-ETTEE-----EEEETTTTEEEEEEEEEETTEEEE
T ss_pred             EEEEeccCCcCCCCcccCCCCCCCCcCCeEec--CCCCCCcceEE-ECCEE-----EEEECCCCEEEEEEECCCCcceee
Confidence            122222221                  11111  11123556777 34542     24445566777777654321    


Q ss_pred             --eeeeeccCCCcEEEEEcCCCCEEEEee
Q 022184          237 --IGHKRLLRKPASVLSISLDGKYLAMGS  263 (301)
Q Consensus       237 --~~~~~~~~~~v~~~~~s~~~~~l~~~~  263 (301)
                        ...+......+..+++.|||.++++..
T Consensus       305 ~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          305 LRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             cchheecccCCCeeEEEECCCCcEEEEEe
Confidence              112222235788999999997666653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.17  E-value=0.00064  Score=53.43  Aligned_cols=231  Identities=9%  Similarity=-0.007  Sum_probs=115.3

Q ss_pred             cEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC----CcEEEEEEcCC
Q 022184           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN----GGCKLFEVYGG   95 (301)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----~~i~~w~~~~~   95 (301)
                      .++++|+...      .-.+|.|++....+...+.....    ...-..+.+  ++..++.|+.+    ..+.+||+.+.
T Consensus        13 ~l~~~GG~~~------~~~~~~~d~~~~~W~~~~~~p~~----r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~   80 (306)
T 3ii7_A           13 YRIALFGGSQ------PQSCRYFNPKDYSWTDIRCPFEK----RRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKD   80 (306)
T ss_dssp             EEEEEECCSS------TTSEEEEETTTTEEEECCCCSCC----CBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTT
T ss_pred             eEEEEeCCCC------CceEEEecCCCCCEecCCCCCcc----cceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCC
Confidence            4666776433      22577778777766543221111    111122222  56666777654    56778887765


Q ss_pred             ccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC------CeEEEEeCCCcceec--ccccCCccEEEEEecCCCc
Q 022184           96 ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSE  167 (301)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~  167 (301)
                      +-..  ...    +.....-.+++ .-++++++.|+.+      ..+.+||..+.+-..  .+.........+.+  +++
T Consensus        81 ~W~~--~~~----~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~  151 (306)
T 3ii7_A           81 SWYS--KLG----PPTPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGL  151 (306)
T ss_dssp             EEEE--EEC----CSSCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred             eEEE--CCC----CCccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCE
Confidence            4311  111    11111111122 2367777888765      468899987764322  12111111122222  567


Q ss_pred             EEEEEeC---------CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc-----ceEEEEEccC
Q 022184          168 FLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDIST  233 (301)
Q Consensus       168 ~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~  233 (301)
                      +++.|+.         -..+.+||+.+.+-...-..+....-..+... +++ +    .+.++.+     ..+.+||+.+
T Consensus       152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i----~v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDK-I----FAVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-E----EEECCEETTEEBCCEEEEETTT
T ss_pred             EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCE-E----EEEeCCCCCCCCceEEEeeCCC
Confidence            7777663         34588999987754332221111111122222 333 2    2333322     4688999877


Q ss_pred             ceE--eeeeeccCCCcEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCceee
Q 022184          234 WNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEIN  279 (301)
Q Consensus       234 ~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~i~~~~~~~~~  279 (301)
                      .+-  +..+.........+.+  ++++++.|+.+     ..+.+||+.+.+..
T Consensus       226 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          226 NEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             TEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             CcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            542  2222222222333333  67788888754     46899999886543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.14  E-value=0.0033  Score=54.67  Aligned_cols=204  Identities=6%  Similarity=-0.075  Sum_probs=126.5

Q ss_pred             CcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEEEeC
Q 022184           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHW  141 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~  141 (301)
                      ..+..++|++.+..|..+. .++.|+.++++...... ...      ........+++.+.+..|+.+ ...+.|.+.++
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-v~~------~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~  109 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-VVE------FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL  109 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EEC------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-EEe------CCCCCcceEEEEeCCCEEEEEECCCCEEEEEec
Confidence            4578999999777666554 46788888876543211 111      012346788998765555544 45688999998


Q ss_pred             CCcceecccccCCccEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEE
Q 022184          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                      +...........-.....++++|....|+...  ..+.|...++..........  .-.....+++++++..+|    ++
T Consensus       110 dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~--~~~~P~GlalD~~~~~LY----~a  183 (628)
T 4a0p_A          110 DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP--NVGRANGLTIDYAKRRLY----WT  183 (628)
T ss_dssp             TSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--SCSSEEEEEEETTTTEEE----EE
T ss_pred             CCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC--CCCCcceEEEccccCEEE----EE
Confidence            65433222223334678999999555555444  24678888876554433332  234588999999888743    45


Q ss_pred             eCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       220 ~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      -...+.|..+|+..... ..+.........+++.. +.++++-...+.|...|..+++....+
T Consensus       184 D~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          184 DLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             ETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             ECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            56678899999875433 22333334556788765 334444445688999998777544433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.13  E-value=2.2e-05  Score=69.17  Aligned_cols=180  Identities=11%  Similarity=-0.044  Sum_probs=104.1

Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCC----cceecccccCCccEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS----LRIILDEPKAHKSVL  158 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~----~~~~~~~~~~~~~i~  158 (301)
                      ...|+..++.+.....        .......+..++|++.+..|+.+. ..+.|+.+++..    ......+........
T Consensus       385 ~~~I~~id~~~~~~~~--------~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~  456 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTS--------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  456 (699)
T ss_dssp             TTC-CEECTTSCCEEC--------CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC
T ss_pred             ccceEEEeCCCCccee--------eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc
Confidence            3456666665543311        111224567789998776666654 457899999875    222222212223456


Q ss_pred             EEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe-CCcceEEEEEccCceE
Q 022184          159 DMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR-GDKALLAVYDISTWNK  236 (301)
Q Consensus       159 ~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~~  236 (301)
                      .|++.+. ++++++-...+.|.++++........+. ........+++.|.+.++|    ++. +..+.|..+++.....
T Consensus       457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-~~~~~P~giavDp~~g~ly----~td~~~~~~I~~~~~dG~~~  531 (699)
T 1n7d_A          457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EQGSKPRAIVVDPVHGFMY----WTDWGTPAKIKKGGLNGVDI  531 (699)
T ss_dssp             CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC-CSSCCCCCEECCSSSSCCE----ECCCSSSCCEEBCCSSSCCC
T ss_pred             eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe-CCCCCcceEEEccCCCcEE----EcccCCCCeEEEEeCCCCCe
Confidence            7888864 4455554567889999987554333332 2223467899999877643    222 2236788888764322


Q ss_pred             eeeeeccCCCcEEEEEcCCCCEEEEe-eCCCcEEEEeCCCc
Q 022184          237 IGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKM  276 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~  276 (301)
                      .......-.....|+|+|++..|+.+ ...+.|..+++...
T Consensus       532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            11111222346789999986655555 45678999998653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.11  E-value=0.0022  Score=51.53  Aligned_cols=231  Identities=11%  Similarity=0.029  Sum_probs=117.5

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC---CCEEEEee-c-------
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGG-V-------  132 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~-~-------  132 (301)
                      .....|+|.|+|++|+++...|.|++++.. +.....+................++|+|+   +..|.... .       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            357899999999845555678988888743 22111111000011123456789999995   44554443 2       


Q ss_pred             CCeEEEEeCCCc-------ceec-cccc---CCccEEEEEecCCCcEEEEEeCC-------------CcEEEEeCCCCc-
Q 022184          133 DGHLRIMHWPSL-------RIIL-DEPK---AHKSVLDMDFSLDSEFLATTSTD-------------GSARIWKTEDGV-  187 (301)
Q Consensus       133 dg~i~v~d~~~~-------~~~~-~~~~---~~~~i~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~-  187 (301)
                      ...|..+++...       +.+. .+..   .......++|.|||.++++.+..             +.|.-++....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            235666665432       1111 1111   11123579999999766665432             356666654220 


Q ss_pred             -----------eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE--------------------
Q 022184          188 -----------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--------------------  236 (301)
Q Consensus       188 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------------------  236 (301)
                                 ....+..... ....++|.|....+|+   .-.+.++.=.|.-+..+..                    
T Consensus       177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~---~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~  252 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWL---NEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA  252 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEE---EEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred             CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEE---EecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence                       1122222222 3778999994333221   2222221111111111110                    


Q ss_pred             -----------eeeeeccCCCcEEEEEcC-------CCCEEEEeeCCCcEEEEeCCCceeecc--ccccccCccEEEEEE
Q 022184          237 -----------IGHKRLLRKPASVLSISL-------DGKYLAMGSKDGDICVVDVKKMEINHW--SKRLHLGTSIALVEF  296 (301)
Q Consensus       237 -----------~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~d~~i~i~~~~~~~~~~~--~~~~~~~~~v~~~~~  296 (301)
                                 +..+ .+...+..+.|..       +|+++++.-..+.|...++..++....  +.... ...+..+++
T Consensus       253 ~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~  330 (353)
T 2g8s_A          253 KGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDR-GQRIRDVRT  330 (353)
T ss_dssp             CBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGG-CCCEEEEEE
T ss_pred             cCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCC-CCceeEEEE
Confidence                       0001 1123456677753       466777666778888888876543322  11122 357899999


Q ss_pred             ccCCC
Q 022184          297 CPTQR  301 (301)
Q Consensus       297 spdg~  301 (301)
                      .|||.
T Consensus       331 ~pdG~  335 (353)
T 2g8s_A          331 GPDGY  335 (353)
T ss_dssp             CTTSC
T ss_pred             CCCCc
Confidence            99984

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.04  E-value=0.003  Score=54.83  Aligned_cols=192  Identities=6%  Similarity=-0.020  Sum_probs=112.3

Q ss_pred             eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCCcce-ecccccCC
Q 022184           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI-ILDEPKAH  154 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~-~~~~~~~~  154 (301)
                      +|+-+ ....|+..++........      ........+..++|++.+..|+.+. ..+.|..++++.... ...+...-
T Consensus        11 ~~~~~-~~~~I~~i~~~~~~~~~~------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~   83 (619)
T 3s94_A           11 LLLYA-NRRDLRLVDATNGKENAT------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL   83 (619)
T ss_dssp             CEEEE-CSSBEEEECCC---------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSC
T ss_pred             eEEEe-ccccEEEEeCCCCcceEE------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCC
Confidence            44443 345588888765421111      1112334578999999766666554 467888888865432 12222222


Q ss_pred             ccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          155 KSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       155 ~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      .....+++.+.++ ++++-...+.|.+.++........+. ..-.....+++.|.+..+|+   .--+..+.|...++..
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~Iavdp~~g~ly~---tD~g~~~~I~r~~~dG  159 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGFMYW---TDWGEVPKIERAGMDG  159 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCCEEEETTTTEEEE---EECSSSCEEEEEETTS
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe-CCCCCCceEEEecCCCeEEE---eccCCCCEEEEEECCC
Confidence            5688999998555 55555567899999987654333332 22334789999998775332   2223356788888764


Q ss_pred             ceEeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCceee
Q 022184          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEIN  279 (301)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~  279 (301)
                      ..........-.....++++++++.|+.+. ..+.|..+++......
T Consensus       160 ~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~  206 (619)
T 3s94_A          160 SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ  206 (619)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC
T ss_pred             CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE
Confidence            433222222334678999999776666664 4578999998765433

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.97  E-value=0.0032  Score=49.47  Aligned_cols=234  Identities=12%  Similarity=0.060  Sum_probs=114.0

Q ss_pred             ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec----C-----CcEEE
Q 022184           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----N-----GGCKL   89 (301)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----d-----~~i~~   89 (301)
                      ..+++.|+...    ...-.++.|++....+...+.......+|    ..+.+  +++.++.|+.    +     ..+.+
T Consensus        25 ~~i~v~GG~~~----~~~~~~~~~d~~~~~W~~~~~~p~~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~   94 (308)
T 1zgk_A           25 RLIYTAGGYFR----QSLSYLEAYNPSNGTWLRLADLQVPRSGL----AGCVV--GGLLYAVGGRNNSPDGNTDSSALDC   94 (308)
T ss_dssp             CCEEEECCBSS----SBCCCEEEEETTTTEEEECCCCSSCCBSC----EEEEE--TTEEEEECCEEEETTEEEECCCEEE
T ss_pred             CEEEEEeCcCC----CCcceEEEEcCCCCeEeECCCCCcccccc----eEEEE--CCEEEEECCCcCCCCCCeecceEEE
Confidence            45777777411    12224677777776665432211111122    12222  5666666665    2     45778


Q ss_pred             EEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC-----CeEEEEeCCCcceec--ccccCCccEEEEEe
Q 022184           90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIIL--DEPKAHKSVLDMDF  162 (301)
Q Consensus        90 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~  162 (301)
                      ||+.+.+-..      ...+.....-.+++ .-++++++.|+.+     ..+.+||+.+.+-..  .+.........+.+
T Consensus        95 ~d~~~~~W~~------~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  167 (308)
T 1zgk_A           95 YNPMTNQWSP------CAPMSVPRNRIGVG-VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  167 (308)
T ss_dssp             EETTTTEEEE------CCCCSSCCBTCEEE-EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             ECCCCCeEeE------CCCCCcCccccEEE-EECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence            8876654211      11111111111222 2267777777643     468889987654322  12111112222222


Q ss_pred             cCCCcEEEEEeCC-----CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc-----ceEEEEEcc
Q 022184          163 SLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDIS  232 (301)
Q Consensus       163 ~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~  232 (301)
                        ++++++.|+.+     ..+.+||+.+.+-...-..+....-.+++.. +++ +    .+.++.+     ..+.+||+.
T Consensus       168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i----yv~GG~~~~~~~~~v~~yd~~  239 (308)
T 1zgk_A          168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNC-I----YAAGGYDGQDQLNSVERYDVE  239 (308)
T ss_dssp             --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTE-E----EEECCBCSSSBCCCEEEEETT
T ss_pred             --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCE-E----EEEeCCCCCCccceEEEEeCC
Confidence              57777777754     4588999887654332111111111122222 333 2    2334332     568999987


Q ss_pred             CceEe--eeeeccCCCcEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCceee
Q 022184          233 TWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEIN  279 (301)
Q Consensus       233 ~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~i~~~~~~~~~  279 (301)
                      +.+-.  ..+.........+.+  ++++++.|+.+     ..+.+||+.+.+..
T Consensus       240 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          240 TETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            75432  222211122222222  67788888754     45889999876544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.97  E-value=0.0073  Score=52.51  Aligned_cols=189  Identities=8%  Similarity=-0.010  Sum_probs=117.6

Q ss_pred             eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEEEeCCCcceecccccCCc
Q 022184           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHK  155 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~  155 (301)
                      +|+.+ ....|+..++++......      ..+..-..+..++|++.+..|+.+ ..++.|+.+++..............
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~   80 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVA------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD   80 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEE------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             EEEEE-eCCcEEEEECCCCCcceE------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence            45554 456688888876542111      111223467899999966666554 4578899998865433222222224


Q ss_pred             cEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184          156 SVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (301)
Q Consensus       156 ~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  234 (301)
                      ....+++.+.+. ++++-...+.|.+.++........+.. .-.....+++.|....+|.   .--+..+.|...++...
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~-~l~~P~~iavdp~~G~lY~---tD~g~~~~I~r~~~dG~  156 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK-DLDSPRALALDPAEGFMYW---TEWGGKPKIDRAAMDGS  156 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS-SCCCEEEEEEETTTTEEEE---EECSSSCEEEEEETTSC
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC-CCCCcccEEEccCCCeEEE---eCCCCCCEEEEEeCCCC
Confidence            567888887655 445555667899999875543333322 2335789999997665331   22234678888888754


Q ss_pred             eEeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCce
Q 022184          235 NKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKME  277 (301)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~  277 (301)
                      .... +...-.....++++++++.|+.+. ..+.|..+++....
T Consensus       157 ~~~~-l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~  199 (628)
T 4a0p_A          157 ERTT-LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN  199 (628)
T ss_dssp             SCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ceEE-EECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc
Confidence            4322 222345678999999877777664 45789999987543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.96  E-value=0.0023  Score=50.15  Aligned_cols=235  Identities=14%  Similarity=0.111  Sum_probs=112.5

Q ss_pred             ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC-----CcEEEEEEc
Q 022184           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVY   93 (301)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----~~i~~w~~~   93 (301)
                      ..++++|+....    ..-.++.+++....+...+........|    ..+.+  ++..++.|+.+     ..+.+||..
T Consensus        16 ~~i~v~GG~~~~----~~~~~~~~d~~~~~W~~~~~~p~~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~   85 (302)
T 2xn4_A           16 KLMVVVGGQAPK----AIRSVECYDFKEERWHQVAELPSRRCRA----GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPV   85 (302)
T ss_dssp             EEEEEECCBSSS----BCCCEEEEETTTTEEEEECCCSSCCBSC----EEEEE--TTEEEEESCBCSSSBCCCEEEEETT
T ss_pred             CEEEEECCCCCC----CCCcEEEEcCcCCcEeEcccCCcccccc----eEEEE--CCEEEEEeCcCCCccccceEEECCC
Confidence            356777774321    1123566666665554322111111111    12222  56666777654     357788876


Q ss_pred             CCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC-----eEEEEeCCCcceec--ccccCCccEEEEEecCCC
Q 022184           94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDS  166 (301)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~  166 (301)
                      +.+-..  .    ..+.....-.+++ ..++++++.|+.++     .+.+||+.+.+-..  .+.........+.+  ++
T Consensus        86 ~~~W~~--~----~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~  156 (302)
T 2xn4_A           86 KDQWTS--V----ANMRDRRSTLGAA-VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG  156 (302)
T ss_dssp             TTEEEE--E----CCCSSCCBSCEEE-EETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred             CCceee--C----CCCCccccceEEE-EECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC
Confidence            654211  1    1111111111222 23677777777553     57788887654321  12111111222222  56


Q ss_pred             cEEEEEeCC-------CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc-----ceEEEEEccCc
Q 022184          167 EFLATTSTD-------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTW  234 (301)
Q Consensus       167 ~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~  234 (301)
                      +.++.|+.+       ..+.+||+.+.+-...-..+....-.+++.. +++.     .+.++.+     ..+.+||+.+.
T Consensus       157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i-----yv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLL-----YAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEE-----EEECCBSSSSBCCCEEEEETTTT
T ss_pred             EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEE-----EEECCCCCCcccceEEEEeCCCC
Confidence            777777643       3588999887654433221111111122222 3332     2334432     46889998765


Q ss_pred             eE--eeeeeccCCCcEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCceeec
Q 022184          235 NK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKMEINH  280 (301)
Q Consensus       235 ~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~i~~~~~~~~~~  280 (301)
                      +-  +............+.  -++++++.|+.++     .+.+||+.+.+...
T Consensus       231 ~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  281 (302)
T 2xn4_A          231 AWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV  281 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence            43  222221111222222  3677888887653     48999998876443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.91  E-value=0.0027  Score=50.83  Aligned_cols=159  Identities=12%  Similarity=0.090  Sum_probs=90.0

Q ss_pred             cCCeEEEEeCCCc--ce-eccccc-----CCccEEEEEecC--CCc-EEEEE-eC--CCcEEEEeCCCCce----EEEEe
Q 022184          132 VDGHLRIMHWPSL--RI-ILDEPK-----AHKSVLDMDFSL--DSE-FLATT-ST--DGSARIWKTEDGVA----WTFLT  193 (301)
Q Consensus       132 ~dg~i~v~d~~~~--~~-~~~~~~-----~~~~i~~~~~~~--~~~-~l~~~-~~--d~~i~i~d~~~~~~----~~~~~  193 (301)
                      .+|.|.++|+++.  +. ...+.+     ..-....+.+.+  +++ +|+.+ ..  +.+|.+|++.....    +..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6899999998732  21 112222     112566777755  454 34444 33  46788888765322    22333


Q ss_pred             ecCCCCeeEEEEccCCCcceEEEEEEeC-----------------CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCC
Q 022184          194 RNSDEKIELCRFSKDGTKPFLFCTVQRG-----------------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG  256 (301)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~  256 (301)
                      ...-...+.+.+.++|..     .++..                 ..+.|..+|..+-+   .....-...+.++||||+
T Consensus       161 g~~~~~pND~~v~~~G~f-----yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~---~~~~~l~~pNGia~spDg  232 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHF-----YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR---VVAEGFDFANGINISPDG  232 (355)
T ss_dssp             CTTCSSEEEEEEEETTEE-----EEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCE---EEEEEESSEEEEEECTTS
T ss_pred             cCCCCCCceEEEeCCCCE-----EecCCcEeCCcccccchhhccCCccEEEEEECCeEE---EeecCCcccCcceECCCC
Confidence            333345789999999984     12221                 23566666653221   222222456889999999


Q ss_pred             CEEEEee-CCCcEEEEeCCC-ceee--ccccccccCccEEEEEEcc-CCC
Q 022184          257 KYLAMGS-KDGDICVVDVKK-MEIN--HWSKRLHLGTSIALVEFCP-TQR  301 (301)
Q Consensus       257 ~~l~~~~-~d~~i~i~~~~~-~~~~--~~~~~~~~~~~v~~~~~sp-dg~  301 (301)
                      +.|+++. ..+.|..|++.. ++..  +.+ . . .+....++..+ +|+
T Consensus       233 ~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~-~-~g~PDGi~vD~e~G~  279 (355)
T 3sre_A          233 KYVYIAELLAHKIHVYEKHANWTLTPLRVL-S-F-DTLVDNISVDPVTGD  279 (355)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E-C-SSEEEEEEECTTTCC
T ss_pred             CEEEEEeCCCCeEEEEEECCCCcEecCEEE-e-C-CCCCceEEEeCCCCc
Confidence            8888775 467899999863 3221  122 1 1 34566677776 363

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.85  E-value=0.0017  Score=52.63  Aligned_cols=149  Identities=13%  Similarity=0.131  Sum_probs=90.7

Q ss_pred             CCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec---
Q 022184           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL---  148 (301)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~---  148 (301)
                      ..+|..++.+ .++.||.-++.... ..+...  .+..-.-..+..+..||+|++||..+ +..|.|..++.+....   
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~-~Yk~L~--~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDS-LYHSLN--FSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCS-SCEEEE--CTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCC-cceEEe--cCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccc
Confidence            4466666665 45667777776432 111111  11000123567899999999999887 5679998887322100   


Q ss_pred             ---------cccc------CCccEEEEEecCC---CcEEEEEeCCCcEEEEeCCCC--ceEEEEeec--------CCCCe
Q 022184          149 ---------DEPK------AHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDG--VAWTFLTRN--------SDEKI  200 (301)
Q Consensus       149 ---------~~~~------~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~--------~~~~v  200 (301)
                               .+.-      ...+|..+.|+|-   +..|++-..|+.|++||+...  ++. .+...        ....+
T Consensus       104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred             ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence                     1110      2357999999994   458999999999999999852  222 23211        11358


Q ss_pred             eEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184          201 ELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (301)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (301)
                      .+++|.+++-.+|   +++....|.|+-.
T Consensus       183 ~S~~Fg~~~lTLY---vl~~t~~GDIYAl  208 (452)
T 3pbp_A          183 TDLEFSKDGLTLY---CLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEECTTSSCEE---EEECTTSCEEEEE
T ss_pred             EEEEEcCCCcEEE---EEecCCCCCEEEE
Confidence            8999999765533   3445566767643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.82  E-value=0.0071  Score=47.65  Aligned_cols=221  Identities=14%  Similarity=0.112  Sum_probs=107.0

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec----C-------CcEEEEEEcCCccccccccccC
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----N-------GGCKLFEVYGGATDINLLAKKM  106 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----d-------~~i~~w~~~~~~~~~~~~~~~~  106 (301)
                      .++.||+....+...     .+..............+++.++.|+.    +       ..+..||..+.+-  ..    .
T Consensus        14 ~~~~yd~~~~~W~~~-----~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~----~   82 (315)
T 4asc_A           14 GAVAYDPAANECYCA-----SLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LG----M   82 (315)
T ss_dssp             EEEEEETTTTEEEEE-----ECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EE----C
T ss_pred             ceEEECCCCCeEecC-----CCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EE----C
Confidence            577888887776431     11111222333334457777777773    1       1256677665542  11    1


Q ss_pred             CCCCCCCCeeEEEEeeCCCEEEEeecC--------CeEEEEeCCCcceec--ccccCCccEEEEEecCCCcEEEEEeC-C
Q 022184          107 PPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTST-D  175 (301)
Q Consensus       107 ~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-d  175 (301)
                      ..+.....-.+++ .-++++++.|+.+        ..+.+||..+.+-..  .+.........+.  -+++.++.|+. +
T Consensus        83 ~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~  159 (315)
T 4asc_A           83 PPLPSPRCLFGLG-EALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGS  159 (315)
T ss_dssp             CCBSSCEESCEEE-EETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCT
T ss_pred             CCCCcchhceeEE-EECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCC
Confidence            1111111111122 2266777777742        458889987754321  1211111112222  35677777776 2


Q ss_pred             -----CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCC-----cceEEEEEccCceE--eeeeecc
Q 022184          176 -----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWNK--IGHKRLL  243 (301)
Q Consensus       176 -----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~d~~~~~~--~~~~~~~  243 (301)
                           ..+.+||+.+.+-...-..+....-.+++.. +++ ++    +.++.     -..+.+||+.+.+-  +......
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iy----v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  233 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGR-II----VAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE  233 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTE-EE----EEEEECSSSEEEEEEEEETTTTEEEEECCCSSC
T ss_pred             CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCE-EE----EEeccCCCCccceEEEEECCCCeEEECCCCCCc
Confidence                 3688999887654332211111111122222 333 22    22322     23688899877543  2222211


Q ss_pred             CCCcEEEEEcCCCCEEEEeeCC--------------CcEEEEeCCCceeec
Q 022184          244 RKPASVLSISLDGKYLAMGSKD--------------GDICVVDVKKMEINH  280 (301)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~d--------------~~i~i~~~~~~~~~~  280 (301)
                      ......+.+  ++++++.|+.+              ..+.+||+.+.+-..
T Consensus       234 r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  282 (315)
T 4asc_A          234 RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG  282 (315)
T ss_dssp             CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred             ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence            222222333  66777777753              247889998775443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.69  E-value=0.0069  Score=47.42  Aligned_cols=144  Identities=9%  Similarity=-0.009  Sum_probs=85.5

Q ss_pred             EEEEeeCCCEEEEeecC--------------CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEe--CCC--cE
Q 022184          117 CLSFSVDGSRFAAGGVD--------------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDG--SA  178 (301)
Q Consensus       117 ~~~~s~~~~~l~~~~~d--------------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~--~i  178 (301)
                      +--+++++.+|+.+...              ..|+..++...+.. .+...  .  ...|++++++|+-..  .++  .|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDPD--P--CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEECS--C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-EeecC--C--ccEEEEeCCEEEEEeecCCCCceE
Confidence            34568899998877653              46777777665432 22221  1  236778888888765  333  45


Q ss_pred             EEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCE
Q 022184          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY  258 (301)
Q Consensus       179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  258 (301)
                      ...++... ....+..+.   +  .+++++++.++    .+.....+|...++..+.......   +... ..++|++.+
T Consensus       132 y~~~~dGs-~~~~lt~~~---~--~~~~~~g~~iy----~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~  197 (302)
T 3s25_A          132 YRIRIDGE-EKKKIKNHY---L--FTCNTSDRYFY----YNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTN  197 (302)
T ss_dssp             EEEETTSC-CCEEEESSC---C--CCSEEETTEEE----EECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTE
T ss_pred             EEEECCCC-CeEEEeCCC---c--eEeeEECCEEE----EEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCE
Confidence            55566533 334444322   2  35678888743    334456789999987765443222   2222 346699988


Q ss_pred             EEEeeCC--CcEEEEeCCCceee
Q 022184          259 LAMGSKD--GDICVVDVKKMEIN  279 (301)
Q Consensus       259 l~~~~~d--~~i~i~~~~~~~~~  279 (301)
                      |+.....  ..|..-++......
T Consensus       198 iy~t~~~~~~~I~~~~ldG~~~~  220 (302)
T 3s25_A          198 VYYMDVNRDNAIVHVNINNPNPV  220 (302)
T ss_dssp             EEEEEGGGTTEEEEECSSSCCCE
T ss_pred             EEEEEcCCCcEEEEEECCCCCeE
Confidence            8877544  35777777665533

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.65  E-value=0.015  Score=46.38  Aligned_cols=230  Identities=13%  Similarity=0.090  Sum_probs=116.9

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC---CCEEEEe---ecCCeE
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAG---GVDGHL  136 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~---~~dg~i  136 (301)
                      -.....|+|.|+|+.+++-...|.|++++..++.... +................++++|+   +..|...   ..++.|
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~-v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTE-LGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEee-ecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            4467899999999877765448888888754433211 11000111234567899999995   3444432   234556


Q ss_pred             EEEeCCCc----------ceec-cccc-CCccEEEEEecCCCcEEEEEeC-------------CCcEEEEeCCCCc----
Q 022184          137 RIMHWPSL----------RIIL-DEPK-AHKSVLDMDFSLDSEFLATTST-------------DGSARIWKTEDGV----  187 (301)
Q Consensus       137 ~v~d~~~~----------~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~----  187 (301)
                      .-|.+..+          +.+. .+.. .......|+|.|||.++++.+.             .|.|.-.+....-    
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            66655431          1111 1111 1113456999999987777542             2444444443210    


Q ss_pred             ---eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE------------------eeeeeccCCC
Q 022184          188 ---AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK------------------IGHKRLLRKP  246 (301)
Q Consensus       188 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------------~~~~~~~~~~  246 (301)
                         ....+...+. ....++|+|+|.. +   ..-.+.++.=.|--+..+..                  +..+..+...
T Consensus       190 Pf~~~~i~a~G~R-Np~Gla~dp~G~L-~---~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a  264 (347)
T 3das_A          190 PFPGSPVYSYGHR-NVQGLAWDDKQRL-F---ASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS  264 (347)
T ss_dssp             SSTTCCEEEBCCS-BCCEEEECTTCCE-E---EEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred             CCCCCeEEeeCCC-CcceEEECCCCCE-E---EEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence               1122322332 3678999998763 2   12223332111211121111                  1111111124


Q ss_pred             cEEEEEcCCCCEEEEeeCCCcEEEEeCCCceee---ccccccccCccEEEEEEccCC
Q 022184          247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN---HWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       247 v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~---~~~~~~~~~~~v~~~~~spdg  300 (301)
                      ...++|. +|..+...-..+.|....+......   ..+.... ...+..++..|||
T Consensus       265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~-~gR~~dv~~~pDG  319 (347)
T 3das_A          265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE-YGRLRTVAPAGGD  319 (347)
T ss_dssp             EEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT-SSCEEEEEEEETT
T ss_pred             CcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC-CCCccEEEECCCC
Confidence            4567776 3555555555567777776654321   1121222 4679999999998

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.64  E-value=0.0074  Score=49.01  Aligned_cols=117  Identities=15%  Similarity=0.133  Sum_probs=76.2

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccc-------cc--cccCC--CCCCCCCeeEEEEee---CCCEEEE
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-------LL--AKKMP--PLQDAGPQKCLSFSV---DGSRFAA  129 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~-------~~--~~~~~--~~~~~~~v~~~~~s~---~~~~l~~  129 (301)
                      +.|..+..+|+|++||..+. ..|.|-.+..+.....       +.  .-...  ......+|..+.|+|   .+..|++
T Consensus        66 ~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           66 DDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             CTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             CceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            46888999999999998754 4699999884321111       00  00011  111357899999999   4678999


Q ss_pred             eecCCeEEEEeCCCcce-ecccc---------cCCccEEEEEecCCCcEEEEEe--CCCcEEEE
Q 022184          130 GGVDGHLRIMHWPSLRI-ILDEP---------KAHKSVLDMDFSLDSEFLATTS--TDGSARIW  181 (301)
Q Consensus       130 ~~~dg~i~v~d~~~~~~-~~~~~---------~~~~~i~~~~~~~~~~~l~~~~--~d~~i~i~  181 (301)
                      -..|+.|++||+..... ...+.         .....|.+++|.+++-.|...+  ++|.|+-.
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999999999975221 00111         1114688999999776666644  77776543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.61  E-value=0.0018  Score=47.52  Aligned_cols=143  Identities=11%  Similarity=-0.050  Sum_probs=80.9

Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCcc--------EEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS--------VLDMDFSLDSEFLATTSTDGSARIWKTE  184 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~d~~i~i~d~~  184 (301)
                      ..+..++|+|+|.+.++  .+|.++-.+..+..... .......        ...+.|.|+|.+.++  .||.|.-++-.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDN-WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC-HHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCccc-ccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            36779999999986666  67887777765432211 1111122        478899999987777  56888877753


Q ss_pred             CCceE------EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE------eeeee-ccCCCcEEEE
Q 022184          185 DGVAW------TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK------IGHKR-LLRKPASVLS  251 (301)
Q Consensus       185 ~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~~~~-~~~~~v~~~~  251 (301)
                      +....      ..+-...=..+..+.|.|+|..      .+.. ++.+.-....+...      ...+. ..-...+.+.
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L------yav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~  188 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL------YAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF  188 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE------EEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceE------EEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence            32111      1111111124789999999984      4444 66654332221110      00111 1112334567


Q ss_pred             EcCCCCEEEEeeCCCcEE
Q 022184          252 ISLDGKYLAMGSKDGDIC  269 (301)
Q Consensus       252 ~s~~~~~l~~~~~d~~i~  269 (301)
                      |.|++.+.++.  ++.++
T Consensus       189 f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          189 FSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             ECTTSCEEEEE--TTEEE
T ss_pred             ECCCCcEEEEe--CCeEE
Confidence            89999877776  66443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.61  E-value=0.018  Score=46.26  Aligned_cols=59  Identities=7%  Similarity=-0.050  Sum_probs=36.0

Q ss_pred             CeeEEEEccC-------CCcceEEEEEEeCCcceEEEEEccCceEeeee---eccCCCcEEEEEcCCCCEEEEe
Q 022184          199 KIELCRFSKD-------GTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMG  262 (301)
Q Consensus       199 ~v~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~  262 (301)
                      .+..++|.+.       +..     +++.-..+.|...++..++.....   ......+..+++.|||.++++.
T Consensus       272 ap~G~~~y~g~~fp~~~g~l-----~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKL-----FIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEE-----EEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             CcceeEEECCccCcccCCcE-----EEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            3566777642       332     344456678888887765433221   1223578999999999865543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.55  E-value=0.0022  Score=47.09  Aligned_cols=109  Identities=10%  Similarity=-0.032  Sum_probs=63.0

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC--CCCCeeEEEEeeCCCEEEEeecCCeEEEEeC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ--DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~  141 (301)
                      ..+..++|+|+|.+.++  .+|.++-.+..+...  .........+.  .-....++.|.|+|.+.++  .||.|+-++-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~--~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN--DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTT--CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCc--ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            36789999999986655  667544444322211  11110000000  0012478899999987777  5699988876


Q ss_pred             CCcceecc------c-ccCCccEEEEEecCCCcEEEEEeCCCcEEE
Q 022184          142 PSLRIILD------E-PKAHKSVLDMDFSLDSEFLATTSTDGSARI  180 (301)
Q Consensus       142 ~~~~~~~~------~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  180 (301)
                      .+.....-      + ...-..+..|.+.|+|.+.+..  |+.++-
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            44222111      1 0111478999999999877766  677543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.52  E-value=0.013  Score=47.01  Aligned_cols=57  Identities=14%  Similarity=0.116  Sum_probs=30.9

Q ss_pred             eEEEEEccCce--EeeeeeccCCCcEEEEEcCCCCEEEEeeCCC------cEEEEeCCCceeecccc
Q 022184          225 LLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDG------DICVVDVKKMEINHWSK  283 (301)
Q Consensus       225 ~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~------~i~i~~~~~~~~~~~~~  283 (301)
                      .+.+||+.+.+  .+..+......-.+  ...++++++.|+.++      .|.++++++++......
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            57789987543  33333222222222  334778888888653      46677888887666543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.48  E-value=0.027  Score=45.18  Aligned_cols=230  Identities=13%  Similarity=0.027  Sum_probs=114.5

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcc-eeeeCCceeccccccCCcceEEEECCC---CCeEEEEe
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT-SVYTSPLVTYVFDESEGDPMTIAVNPS---GDDFVCST   82 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~~   82 (301)
                      ...++|.|+   ++++++-.       .+  +|+.++..+. .+...+    ...........|+++|+   +..|..+.
T Consensus        31 P~~ia~~pd---G~l~V~e~-------~g--~I~~~d~~G~~~~~~~~----v~~~g~~g~~gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           31 PWSIAPLGG---GRYLVTER-------PG--RLVLISPSGKKLVASFD----VANVGEAGLLGLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             EEEEEEEET---TEEEEEET-------TT--EEEEECSSCEEEEEECC----CCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CeEEEEcCC---CeEEEEeC-------CC--EEEEEeCCCceEeeccc----eeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence            467889987   45555422       23  4555554432 111111    11222456889999997   45555443


Q ss_pred             c----C----CcEEEEEEcCCccc----cccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-------------CCeEE
Q 022184           83 T----N----GGCKLFEVYGGATD----INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-------------DGHLR  137 (301)
Q Consensus        83 ~----d----~~i~~w~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~  137 (301)
                      .    +    ..|..|+.......    ..+.........|  ....++|.|||.+.++.+.             .|.|.
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~  172 (354)
T 3a9g_A           95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKIL  172 (354)
T ss_dssp             EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEE
T ss_pred             eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEE
Confidence            3    2    56777777654110    1111100111112  2467999999987666432             24565


Q ss_pred             EEeCCCcce--------ecccccCCccEEEEEecC-CCcEEEEEeCCC---cEEEEeCCCCc------------------
Q 022184          138 IMHWPSLRI--------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDG---SARIWKTEDGV------------------  187 (301)
Q Consensus       138 v~d~~~~~~--------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~---~i~i~d~~~~~------------------  187 (301)
                      -++.. ++.        ...+.........++|+| +++++++-....   .|.+..  .+.                  
T Consensus       173 ri~~d-G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~  249 (354)
T 3a9g_A          173 RVDEE-GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVD  249 (354)
T ss_dssp             EECTT-SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCC
T ss_pred             EEcCC-CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcC
Confidence            55543 221        011111223456899999 666555433221   233322  111                  


Q ss_pred             eEEEEeecCCCCeeEEEEc-------cCCCcceEEEEEEeCCcceEEEEEccCc-eEe--eeee-ccCCCcEEEEEcCCC
Q 022184          188 AWTFLTRNSDEKIELCRFS-------KDGTKPFLFCTVQRGDKALLAVYDISTW-NKI--GHKR-LLRKPASVLSISLDG  256 (301)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~--~~~~-~~~~~v~~~~~s~~~  256 (301)
                      ++..+. +....+..++|.       .+|..     +++.-..+.|...++... +..  ..+. .....+..+++.|||
T Consensus       250 p~~~~~-~~~~ap~G~~~y~g~~fp~~~G~l-----~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG  323 (354)
T 3a9g_A          250 PVIDTG-SETWAPSGASFVHGDMFPGLRGWL-----LIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG  323 (354)
T ss_dssp             CSEECT-TCCCCEEEEEECCSSSCGGGTTEE-----EEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred             CEeecC-CCCcCCcceEEECCCCCcccCCcE-----EEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC
Confidence            111110 112246778884       34443     344555678888887753 221  1221 223568899999999


Q ss_pred             CEEEEee
Q 022184          257 KYLAMGS  263 (301)
Q Consensus       257 ~~l~~~~  263 (301)
                      .+.++..
T Consensus       324 ~lyv~~~  330 (354)
T 3a9g_A          324 GILISTS  330 (354)
T ss_dssp             CEEEEEC
T ss_pred             cEEEEEe
Confidence            7666553

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.47  E-value=0.024  Score=45.19  Aligned_cols=144  Identities=8%  Similarity=-0.001  Sum_probs=83.5

Q ss_pred             CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-----cCCCCeeEEEEccC---CCcceEEEEEEeCCcce
Q 022184          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-----NSDEKIELCRFSKD---GTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~  225 (301)
                      -...+.++|.|||+++++--..|.|++++...++.......     ........++++|+   ...+|+  ..+...+..
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv--~yt~~~~~~  108 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA--YFTSASDNR  108 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE--EEECSSSEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEE--EEecCCCCE
Confidence            34678999999999777765589999998766554222111     12334789999996   343332  234345566


Q ss_pred             EEEEEccCc----------eEe-eeee-ccCCCcEEEEEcCCCCEEEEeeC-------------CCcEEEEeCCCce---
Q 022184          226 LAVYDISTW----------NKI-GHKR-LLRKPASVLSISLDGKYLAMGSK-------------DGDICVVDVKKME---  277 (301)
Q Consensus       226 i~~~d~~~~----------~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~-------------d~~i~i~~~~~~~---  277 (301)
                      |.-|.....          +.+ ..+. ...+....+.|.|||.+.++.+.             .|.|.-++....-   
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            777766541          111 1121 12234567999999987766542             3556666654320   


Q ss_pred             ----eeccccccccCccEEEEEEccCCC
Q 022184          278 ----INHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       278 ----~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                          ....+..+|  .....++|+|+|+
T Consensus       189 nPf~~~~i~a~G~--RNp~Gla~dp~G~  214 (347)
T 3das_A          189 NPFPGSPVYSYGH--RNVQGLAWDDKQR  214 (347)
T ss_dssp             CSSTTCCEEEBCC--SBCCEEEECTTCC
T ss_pred             CCCCCCeEEeeCC--CCcceEEECCCCC
Confidence                011121233  2356889999874

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.39  E-value=0.04  Score=45.01  Aligned_cols=226  Identities=12%  Similarity=0.063  Sum_probs=133.3

Q ss_pred             CceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCC
Q 022184           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (301)
Q Consensus        35 ~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  114 (301)
                      ..++|++++...+-.      ...+   ...|.-=.|-.+ +.|+..+ +..|+-|++++...+.+...+. ..+ ....
T Consensus        86 ~~lQiFnle~K~klk------s~~~---~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~-~~L-~~~Q  152 (494)
T 1bpo_A           86 KTLQIFNIEMKSKMK------AHTM---TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH-SSL-AGCQ  152 (494)
T ss_dssp             TEEEEEETTTTEEEE------EEEC---SSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC-GGG-TTCE
T ss_pred             CeEEEEchHHhhhhc------ceec---CCCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc-hhc-ccce
Confidence            456777766543211      1112   345767777543 3455543 4569999998755555544432 222 1356


Q ss_pred             eeEEEEeeCCCEEEEee-------cCCeEEEEeCCCcceecccccCCccEEEEEecCC---CcEEEEEeCC---CcEEEE
Q 022184          115 QKCLSFSVDGSRFAAGG-------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTD---GSARIW  181 (301)
Q Consensus       115 v~~~~~s~~~~~l~~~~-------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d---~~i~i~  181 (301)
                      |..-.-+++.++++..+       -.|.+.+|..+.+.. +.+.+|......+...-+   .+.++.+...   +.++|.
T Consensus       153 IInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~  231 (494)
T 1bpo_A          153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII  231 (494)
T ss_dssp             EEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEE
T ss_pred             EEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEE
Confidence            66677788888876443       247888998876543 455666554444433221   1244444432   678888


Q ss_pred             eCCCC---c-----eEEEEeecC---CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEE
Q 022184          182 KTEDG---V-----AWTFLTRNS---DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL  250 (301)
Q Consensus       182 d~~~~---~-----~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~  250 (301)
                      ++...   .     ....+..+.   ..-.-++..++....     +..-..-|.|++||++++.++..-+.....|...
T Consensus       232 Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv-----iyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t  306 (494)
T 1bpo_A          232 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV-----VFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  306 (494)
T ss_dssp             ECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE-----EEEEecCceEEEEecccceeeeeecccCCceEEe
Confidence            88532   1     111111111   122445666666554     3344577899999999999998777777777776


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184          251 SISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       251 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                      +-+....-++.....|.|.--.++....+
T Consensus       307 ~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          307 APHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             EEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             cccCCCCcEEEEccCceEEEEEEccccch
Confidence            66666566666678888877777665444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.38  E-value=0.032  Score=43.90  Aligned_cols=224  Identities=16%  Similarity=0.122  Sum_probs=104.6

Q ss_pred             EeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec----CC-------cEEEEEEcCCccccccccccCC
Q 022184           39 IFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----NG-------GCKLFEVYGGATDINLLAKKMP  107 (301)
Q Consensus        39 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----d~-------~i~~w~~~~~~~~~~~~~~~~~  107 (301)
                      ++.|++....+...+     +..............++..++.|+.    ++       .+..||..+.+-.  .    ..
T Consensus        26 ~~~yd~~~~~W~~~~-----~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~--~----~~   94 (318)
T 2woz_A           26 AVAYDPMENECYLTA-----LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV--G----LP   94 (318)
T ss_dssp             EEEEETTTTEEEEEE-----ECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEE--E----CS
T ss_pred             eEEECCCCCceeccc-----CCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEE--E----CC
Confidence            677788777664411     1111112223333456777777773    12       1566666554321  1    11


Q ss_pred             CCCCCCCeeEEEEeeCCCEEEEeecC-------CeEEEEeCCCcceec--ccccCCccEEEEEecCCCcEEEEEeCC---
Q 022184          108 PLQDAGPQKCLSFSVDGSRFAAGGVD-------GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTD---  175 (301)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~~d-------g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d---  175 (301)
                      .+.....-.+++. -++++++.|+.+       ..+.+||..+.+-..  .+.........+.  .++++++.|+.+   
T Consensus        95 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~  171 (318)
T 2woz_A           95 PLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDK  171 (318)
T ss_dssp             CBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSS
T ss_pred             CCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCC
Confidence            1111111112222 267777777754       357888887654322  1111111111222  367777777642   


Q ss_pred             ---CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC-CcceEEEEEccCceE--eeeeeccCCCcEE
Q 022184          176 ---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDISTWNK--IGHKRLLRKPASV  249 (301)
Q Consensus       176 ---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~--~~~~~~~~~~v~~  249 (301)
                         ..+.+||+.+.+-...-..+....-.+++.. ++ .++++-..... ....+.+||+.+.+-  +............
T Consensus       172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  249 (318)
T 2woz_A          172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISL  249 (318)
T ss_dssp             CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEE
T ss_pred             CccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEE
Confidence               3589999987754332221111111122222 33 33322111100 124677899876542  2222211122222


Q ss_pred             EEEcCCCCEEEEeeCC--------------CcEEEEeCCCceeec
Q 022184          250 LSISLDGKYLAMGSKD--------------GDICVVDVKKMEINH  280 (301)
Q Consensus       250 ~~~s~~~~~l~~~~~d--------------~~i~i~~~~~~~~~~  280 (301)
                      +.  -++++++.|+.+              ..+.+||+.+.+-..
T Consensus       250 ~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          250 VS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             EE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred             EE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence            22  356777777653              458899998876443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.34  E-value=0.034  Score=43.28  Aligned_cols=148  Identities=11%  Similarity=0.063  Sum_probs=77.9

Q ss_pred             eCCCEEEEeecC-----CeEEEEeCCCcc---e--ecccccCCccEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCC
Q 022184          122 VDGSRFAAGGVD-----GHLRIMHWPSLR---I--ILDEPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDG  186 (301)
Q Consensus       122 ~~~~~l~~~~~d-----g~i~v~d~~~~~---~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~  186 (301)
                      .++++++.|+.+     ..+.+||+.+.+   -  +..+.........+.+  +++.++.|+.++     .+.+||+.+.
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence            467777887754     468899987765   2  2222211112222222  577777776543     5889998876


Q ss_pred             ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCC-----cceEEEEEccCceEe--eeeeccCCCcEEEEEcCCCCEE
Q 022184          187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYL  259 (301)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l  259 (301)
                      +-...-..+....-..++. -+++.     .+.++.     ...+.+||+.+.+-.  ..+.........+.+  +++++
T Consensus       139 ~W~~~~~~p~~r~~~~~~~-~~~~i-----yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~  210 (301)
T 2vpj_A          139 QWSMLGDMQTAREGAGLVV-ASGVI-----YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIY  210 (301)
T ss_dssp             EEEEEEECSSCCBSCEEEE-ETTEE-----EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred             eEEECCCCCCCcccceEEE-ECCEE-----EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEE
Confidence            6443322222211112222 24432     233433     246889998765432  222111112222222  67777


Q ss_pred             EEeeCC-----CcEEEEeCCCceee
Q 022184          260 AMGSKD-----GDICVVDVKKMEIN  279 (301)
Q Consensus       260 ~~~~~d-----~~i~i~~~~~~~~~  279 (301)
                      +.|+.+     ..+.+||+.+.+..
T Consensus       211 v~GG~~~~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          211 VVGGFDGTAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             EECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             EEeCCCCCcccceEEEEeCCCCcEE
Confidence            888764     46899999876543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.20  E-value=0.066  Score=43.74  Aligned_cols=201  Identities=12%  Similarity=0.104  Sum_probs=122.2

Q ss_pred             eEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc-c
Q 022184           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-R  145 (301)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~  145 (301)
                      .+.-.+|..+.+|.-. ..++++||+++......        ..-...|..-.|-.+ +.|+..+ +..|+-|++... .
T Consensus        69 dsAIMnP~~~iiALra-g~~lQiFnle~K~klks--------~~~~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~  137 (494)
T 1bpo_A           69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA--------HTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQ  137 (494)
T ss_dssp             SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEE--------EECSSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCC
T ss_pred             ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcc--------eecCCCceEEEecCC-CeEEEEc-CCeeEEecccCCCC
Confidence            3566788888777654 77899999988765222        122345666677654 4566555 568999999643 3


Q ss_pred             eecccccCC----ccEEEEEecCCCcEEEEEe-------CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc--c
Q 022184          146 IILDEPKAH----KSVLDMDFSLDSEFLATTS-------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK--P  212 (301)
Q Consensus       146 ~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~  212 (301)
                      +.+.+..|.    ..|..-..+++.++++..+       -.|.+.+|..+.+. .+.+.+|.   ..-..+-.+|..  .
T Consensus       138 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGha---a~F~~~~~~g~~~~~  213 (494)
T 1bpo_A          138 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA---ASFAQFKMEGNAEES  213 (494)
T ss_dssp             CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSE---EEEEEEECTTCSSEE
T ss_pred             chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeee---eeeEEEecCCCCCCc
Confidence            333333332    3677778889999877544       23678899876543 23343331   112223223221  1


Q ss_pred             eEEEEEEe-CCcceEEEEEccCc---eE------eeeeec---cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184          213 FLFCTVQR-GDKALLAVYDISTW---NK------IGHKRL---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       213 ~~~~~~~~-~~~~~i~~~d~~~~---~~------~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                      .+++++.. ...+.+++.++...   ..      +..+..   ..+-..++..|+.-..++.-+.-|.|++||+.++..+
T Consensus       214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i  293 (494)
T 1bpo_A          214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  293 (494)
T ss_dssp             EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence            23333332 22478999988542   11      111111   1234567888888888999999999999999999887


Q ss_pred             ccc
Q 022184          280 HWS  282 (301)
Q Consensus       280 ~~~  282 (301)
                      ..-
T Consensus       294 ~~n  296 (494)
T 1bpo_A          294 YMN  296 (494)
T ss_dssp             EEE
T ss_pred             eee
Confidence            654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.16  E-value=0.055  Score=42.14  Aligned_cols=153  Identities=11%  Similarity=0.114  Sum_probs=75.5

Q ss_pred             ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC-----cEEEEEEc
Q 022184           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVY   93 (301)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~~w~~~   93 (301)
                      ..++++|+....   ...-.+|.|++....+...+.....    ...-..+.+  +++.++.|+.++     .+.+||+.
T Consensus        62 ~~lyv~GG~~~~---~~~~~~~~~d~~~~~W~~~~~~p~~----r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~  132 (302)
T 2xn4_A           62 GLVFAVGGFNGS---LRVRTVDSYDPVKDQWTSVANMRDR----RSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIK  132 (302)
T ss_dssp             TEEEEESCBCSS---SBCCCEEEEETTTTEEEEECCCSSC----CBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETT
T ss_pred             CEEEEEeCcCCC---ccccceEEECCCCCceeeCCCCCcc----ccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCC
Confidence            356667664321   1223467777777666443221111    111122222  566777777553     46677766


Q ss_pred             CCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC-------CeEEEEeCCCcceec--ccccCCccEEEEEecC
Q 022184           94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSL  164 (301)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~  164 (301)
                      +.+-..  .    ..+.....-.+++. -++++++.|+.+       ..+.+||+.+.+-..  .+.........+.+  
T Consensus       133 ~~~W~~--~----~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--  203 (302)
T 2xn4_A          133 SNEWFH--V----APMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--  203 (302)
T ss_dssp             TTEEEE--E----CCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred             CCeEee--c----CCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--
Confidence            554211  1    11111111112222 367777777643       358889987654322  22211112222222  


Q ss_pred             CCcEEEEEeCC-----CcEEEEeCCCCceE
Q 022184          165 DSEFLATTSTD-----GSARIWKTEDGVAW  189 (301)
Q Consensus       165 ~~~~l~~~~~d-----~~i~i~d~~~~~~~  189 (301)
                      ++++++.|+.+     ..+.+||+.+.+-.
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  233 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR  233 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence            57778887764     36889999876543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.15  E-value=0.058  Score=42.17  Aligned_cols=198  Identities=10%  Similarity=0.106  Sum_probs=108.9

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC--------------CcEEEEEEcCCcccccccc
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--------------GGCKLFEVYGGATDINLLA  103 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--------------~~i~~w~~~~~~~~~~~~~  103 (301)
                      +||.++.++.....       +.  .+.  +--++++|++|+.+...              ..|+..++++.+.  ....
T Consensus        38 ~ly~~~~dg~~~~~-------l~--~~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--~~l~  104 (302)
T 3s25_A           38 RLYAMNIDGSNIHK-------LS--NDT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--TVLD  104 (302)
T ss_dssp             EEEEEETTSCSCEE-------EE--EEE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC--EEEE
T ss_pred             eEEEEcCCCCCCEE-------cc--CCc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc--eEee
Confidence            67877766543211       11  112  23457889988877543              2455555544432  1111


Q ss_pred             ccCCCCCCCCCeeEEEEeeCCCEEEEee----cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CCcE
Q 022184          104 KKMPPLQDAGPQKCLSFSVDGSRFAAGG----VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSA  178 (301)
Q Consensus       104 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i  178 (301)
                              ..  .+..|+++++.|+...    .+..|+..++..... ..+..+..    .+++|+++.|+-.+. ...|
T Consensus       105 --------~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~~I  169 (302)
T 3s25_A          105 --------PD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNGQL  169 (302)
T ss_dssp             --------CS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred             --------cC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence                    01  2347889999988776    344566666654332 33333322    456788888876665 5678


Q ss_pred             EEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCE
Q 022184          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY  258 (301)
Q Consensus       179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  258 (301)
                      ...++..+.....+.   . ... ..+.|++.++++   ........|..-++...... .+.  ...+  ..|+|++++
T Consensus       170 y~~~l~g~~~~~l~~---~-~~~-~~~~P~g~~iy~---t~~~~~~~I~~~~ldG~~~~-~Lt--~~~~--~~~~~~g~~  236 (302)
T 3s25_A          170 YRYDTASQSEALFYD---C-NCY-KPVVLDDTNVYY---MDVNRDNAIVHVNINNPNPV-VLT--EANI--EHYNVYGSL  236 (302)
T ss_dssp             EEEETTTTEEEEEEC---S-CEE-EEEEEETTEEEE---EEGGGTTEEEEECSSSCCCE-ECS--CSCE--EEEEEETTE
T ss_pred             EEEECCCCCEEEEeC---C-Ccc-ceeeecCCEEEE---EEcCCCcEEEEEECCCCCeE-EEe--CCCc--ceEEECCCE
Confidence            888887665443322   1 222 345699987432   22222257777777765432 222  2223  347888888


Q ss_pred             EEEeeC--CCcEEEEeCCCc
Q 022184          259 LAMGSK--DGDICVVDVKKM  276 (301)
Q Consensus       259 l~~~~~--d~~i~i~~~~~~  276 (301)
                      |+.+..  .+.|..-++...
T Consensus       237 Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          237 IFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             EEEEECSSSCEEEEEETTSC
T ss_pred             EEEEECCCCcEEEEEECCCC
Confidence            876532  356666666543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.14  E-value=0.086  Score=43.87  Aligned_cols=109  Identities=13%  Similarity=0.083  Sum_probs=62.2

Q ss_pred             ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec-------CCCCeeEEEEccC---CCcceEEEEEEe----
Q 022184          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-------SDEKIELCRFSKD---GTKPFLFCTVQR----  220 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~---~~~~~~~~~~~~----  220 (301)
                      ...+.++|.|+|+++++-...+.|++++..+++........       .......++|+|+   +..+|+......    
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45679999999987776544457888886655543222111       1234678999996   555443221100    


Q ss_pred             CC----cceEEEEEccCc-------eEee-eee-ccCCCcEEEEEcCCCCEEEEee
Q 022184          221 GD----KALLAVYDISTW-------NKIG-HKR-LLRKPASVLSISLDGKYLAMGS  263 (301)
Q Consensus       221 ~~----~~~i~~~d~~~~-------~~~~-~~~-~~~~~v~~~~~s~~~~~l~~~~  263 (301)
                      +.    ...|.-|+....       +.+. .+. ...+....++|.|||++.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            01    245666665321       1111 111 1224578899999998776654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.13  E-value=0.18  Score=47.27  Aligned_cols=273  Identities=14%  Similarity=0.121  Sum_probs=138.5

Q ss_pred             CceeEEEeeeecCC---CccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEEC--CCCCeE
Q 022184            4 GGTVTCGSWIKRPE---NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN--PSGDDF   78 (301)
Q Consensus         4 ~~~v~~~~w~~~~~---~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l   78 (301)
                      ...|.|+++.+.++   ...++|+|.     ..+++++|+.++.-. .+     ....+.. ...+.++.+.  ....+|
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~-----~~d~tv~I~sL~~l~-~~-----~~~~L~~-~~~p~si~l~~~~~~~~L  620 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGL-----WTDISARILKLPSFE-LL-----HKEMLGG-EIIPRSILMTTFESSHYL  620 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEE-----TTTTEEEEEETTTCC-EE-----EEEECCS-SCCEEEEEEEEETTEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEE-----CCCCEEEEEECCCCC-eE-----EEEECCC-CCCCcEEEEEEeCCCcEE
Confidence            45799999986543   246788765     247788999986422 11     1112211 1233333332  234578


Q ss_pred             EEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEE
Q 022184           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL  158 (301)
Q Consensus        79 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~  158 (301)
                      ..+-.||.+.-+.++......  .......+ +..++.-..+...+..-+.+..+.-..++.-+ ++....- -....+.
T Consensus       621 ~igl~dG~l~~~~~d~~tg~l--~d~r~~~L-G~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~-l~~~~v~  695 (1158)
T 3ei3_A          621 LCALGDGALFYFGLNIETGLL--SDRKKVTL-GTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSN-VNLKEVN  695 (1158)
T ss_dssp             EEEETTSEEEEEEECTTTCCE--EEEEEEEC-CSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEE-BSSSCCC
T ss_pred             EEEeCCCeEEEEEEcCCCCcc--ccceeEEc-CCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEec-cChHHhc
Confidence            888899988777765322111  10000111 23445444454444433333334444444422 2222111 1112232


Q ss_pred             E-EEecCC--CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe--C------------
Q 022184          159 D-MDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR--G------------  221 (301)
Q Consensus       159 ~-~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~------------  221 (301)
                      . ..|+..  .+-++..+ ++.++|..+..-.....-..+-...++.++++|..+...+...-..  .            
T Consensus       696 ~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  774 (1158)
T 3ei3_A          696 YMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSA  774 (1158)
T ss_dssp             EEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCH
T ss_pred             eEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhh
Confidence            2 334332  12344433 4568888876543333333334456888888887775333221110  0            


Q ss_pred             ------------------------------CcceEEEEEccCceEeeeeeccC-CCcEEEE---EcCC-CCEEEEee---
Q 022184          222 ------------------------------DKALLAVYDISTWNKIGHKRLLR-KPASVLS---ISLD-GKYLAMGS---  263 (301)
Q Consensus       222 ------------------------------~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~---~s~~-~~~l~~~~---  263 (301)
                                                    ..+.|++.|..+++.+..+.... ..+.+++   |..+ ..++++|+   
T Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~  854 (1158)
T 3ei3_A          775 STQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMV  854 (1158)
T ss_dssp             HHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEEC
T ss_pred             hhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeec
Confidence                                          12457888888877665554333 2344443   3332 47888886   


Q ss_pred             -------CCCcEEEEeCCCceeeccccccccCccEEEEE
Q 022184          264 -------KDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (301)
Q Consensus       264 -------~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~  295 (301)
                             ..|.|.+|++..+++........ .++|++++
T Consensus       855 ~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v-~g~v~al~  892 (1158)
T 3ei3_A          855 YPEEAEPKQGRIVVFQYSDGKLQTVAEKEV-KGAVYSMV  892 (1158)
T ss_dssp             CTTCSSCCCEEEEEEEEETTEEEEEEEEEE-SSCEEEEE
T ss_pred             CCCCCCCCceEEEEEEEECCEEEEEEEEEc-CCcCEEEe
Confidence                   34789999997554433332333 67777765

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.12  E-value=0.068  Score=44.49  Aligned_cols=99  Identities=12%  Similarity=0.204  Sum_probs=56.3

Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce--ecccc------cCCccEEEEEecCC---CcEE-EEEeC------
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEP------KAHKSVLDMDFSLD---SEFL-ATTST------  174 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~------~~~~~i~~~~~~~~---~~~l-~~~~~------  174 (301)
                      .....|+|.|+|+++++-...+.|++++..+++.  +..+.      .....+..|+|+|+   +..| ++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3467899999998666654445788887654433  11121      12456789999995   4444 44332      


Q ss_pred             ------CCcEEEEeCCCC--c---eEEE---EeecCCCCeeEEEEccCCCc
Q 022184          175 ------DGSARIWKTEDG--V---AWTF---LTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       175 ------d~~i~i~d~~~~--~---~~~~---~~~~~~~~v~~~~~~~~~~~  211 (301)
                            ...|.-++....  .   ....   +..........++|.|||..
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~L  157 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKI  157 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCE
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeE
Confidence                  134555554322  1   1111   22111224789999999973

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.92  E-value=0.096  Score=40.83  Aligned_cols=186  Identities=13%  Similarity=0.072  Sum_probs=92.9

Q ss_pred             eEEEEec--CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC----CeEEEEeCCCcceec--
Q 022184           77 DFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIIL--  148 (301)
Q Consensus        77 ~l~~~~~--d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~v~d~~~~~~~~--  148 (301)
                      .++.|+.  ...+.+||..+.+-..      ...+.....-.++. ..++.+++.|+.+    ..+.+||..+.+-..  
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~------~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~   86 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTD------IRCPFEKRRDAACV-FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL   86 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEE------CCCCSCCCBSCEEE-EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCCceEEEecCCCCCEec------CCCCCcccceeEEE-EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence            4445554  3568888877654311      11111111111222 2367777888755    678889987764321  


Q ss_pred             ccccCCccEEEEEecCCCcEEEEEeCC------CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCC
Q 022184          149 DEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (301)
Q Consensus       149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (301)
                      .+.........+.+  ++++++.|+.+      ..+.+||+.+.+-...-..+....-.+++. -+++ ++    +.++.
T Consensus        87 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iy----v~GG~  158 (306)
T 3ii7_A           87 GPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGL-IY----VCGGS  158 (306)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE-EE----EECCE
T ss_pred             CCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCE-EE----EECCC
Confidence            22211112222222  67777887765      458899998776433322111111112222 2333 22    22321


Q ss_pred             ---------cceEEEEEccCceE--eeeeeccCCCcEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCceee
Q 022184          223 ---------KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEIN  279 (301)
Q Consensus       223 ---------~~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~i~~~~~~~~~  279 (301)
                               -..+.+||+.+.+-  +..+.........+.+  ++++++.|+.+     ..+.+||+.+.+..
T Consensus       159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  229 (306)
T 3ii7_A          159 LGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK  229 (306)
T ss_dssp             ESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred             CCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence                     35688999877643  2222111122222222  67777777654     46899999876543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.90  E-value=0.1  Score=40.80  Aligned_cols=189  Identities=13%  Similarity=-0.029  Sum_probs=93.4

Q ss_pred             CCCeEEEEecC----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec----C-----CeEEEEe
Q 022184           74 SGDDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----D-----GHLRIMH  140 (301)
Q Consensus        74 ~~~~l~~~~~d----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~v~d  140 (301)
                      ++..++.|+.+    ..+.+||..+.+-...      ..+.....-.+++ ..++++++.|+.    +     ..+.+||
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~------~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL------ADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEEC------CCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeEC------CCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEEC
Confidence            45566666532    3578888766543111      1111111111222 236777777775    2     4688889


Q ss_pred             CCCcceec--ccccCCccEEEEEecCCCcEEEEEeCC-----CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcce
Q 022184          141 WPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (301)
Q Consensus       141 ~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (301)
                      +.+.+-..  .+.........+.+  ++++++.|+.+     ..+.+||+.+.+-...-..+....-.+++.. ++. + 
T Consensus        97 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i-  171 (308)
T 1zgk_A           97 PMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRL-L-  171 (308)
T ss_dssp             TTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTE-E-
T ss_pred             CCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCE-E-
Confidence            87654321  12111112222222  57777777643     3588899887654332211111111122222 333 2 


Q ss_pred             EEEEEEeCC-----cceEEEEEccCceEe--eeeeccCCCcEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCceee
Q 022184          214 LFCTVQRGD-----KALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEIN  279 (301)
Q Consensus       214 ~~~~~~~~~-----~~~i~~~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~i~~~~~~~~~  279 (301)
                         .+.++.     ...+.+||+.+.+-.  ..+.........+.+  ++++++.|+.+     ..+.+||+.+.+..
T Consensus       172 ---yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          172 ---YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             ---EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             ---EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence               233332     246889998765432  222211222223333  67778888764     46999999876543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.82  E-value=0.25  Score=44.06  Aligned_cols=214  Identities=12%  Similarity=0.038  Sum_probs=119.9

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      ...|.+|.-..+|. |-.|+.+| +..||-.....   ...  ... .....|.++.-..++ .|..|+.+| +..||..
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~---~~~--~~~-~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~   90 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQ---HFT--YGE-NNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYR   90 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEE---CSC--TTS-TTSSCEEEEEEETTT-EEEEEETTE-EEEEETT
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceEE---EEc--cCC-CCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCC
Confidence            56799999888874 55566777 66666322111   000  011 123568887776665 566666665 7889987


Q ss_pred             CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe----ecCCCCeeEEEEccCCCcceEEEEE
Q 022184          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      +.+...........|.++.. .++. |..++.+ -+..+|..+++.. .+.    ......|.++...+++..      .
T Consensus        91 ~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~l------W  160 (758)
T 3ott_A           91 ADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQI------Y  160 (758)
T ss_dssp             TTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCE------E
T ss_pred             CCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCE------E
Confidence            65432211111235776654 3554 4445554 6788898765543 231    111235778888777773      3


Q ss_pred             EeCCcceEEEEEccCceEeeee-ec----cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE
Q 022184          219 QRGDKALLAVYDISTWNKIGHK-RL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~-~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~  293 (301)
                      .+..+ -|..+|..+.+..... ..    ....|.++...+++..|..|+. +-+..++..+++..... ... ...|.+
T Consensus       161 igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~-~l~-~~~i~~  236 (758)
T 3ott_A          161 VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTE-AFH-NNSIKS  236 (758)
T ss_dssp             EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEE-EEE-EEEEEE
T ss_pred             EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEecc-CCC-CCeEEE
Confidence            34444 4778887765532111 11    1224788888877765555554 45888998776543221 112 345667


Q ss_pred             EEEccCC
Q 022184          294 VEFCPTQ  300 (301)
Q Consensus       294 ~~~spdg  300 (301)
                      +.-.++|
T Consensus       237 i~~d~~g  243 (758)
T 3ott_A          237 LALDGNG  243 (758)
T ss_dssp             EEECTTC
T ss_pred             EEEcCCC
Confidence            6665555

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.0028  Score=50.24  Aligned_cols=116  Identities=11%  Similarity=0.035  Sum_probs=66.6

Q ss_pred             CeEEEEecCCcEEEEEEcCCcccccccccc-CCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEEEeCCCcceeccccc-
Q 022184           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPK-  152 (301)
Q Consensus        76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~-  152 (301)
                      ..++.++.||.|.-+|.++++....+.... ...+....+.    ...++..++.. +.||.|..++..+|.....+.. 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~----~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~   86 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPS----RLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR   86 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSC----TTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCc----cccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence            367777888888888887777655543321 0111000000    00123333333 5799999999887754332211 


Q ss_pred             ---CCccEEE---EEe-c----CCCcEEEEEeCCCcEEEEeCCCCceEEEEeec
Q 022184          153 ---AHKSVLD---MDF-S----LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN  195 (301)
Q Consensus       153 ---~~~~i~~---~~~-~----~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  195 (301)
                         ...++..   ... .    ..+..+++++.++++...|+++|+.+..+...
T Consensus        87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence               1112221   001 0    14567889999999999999999999888643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.72  E-value=0.19  Score=47.48  Aligned_cols=202  Identities=11%  Similarity=0.101  Sum_probs=114.8

Q ss_pred             EEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc-ce
Q 022184           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RI  146 (301)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~  146 (301)
                      +.-.+|..+.+|.- ...++++||+++...        +....-..+|..-.|-.+ +.|+..+ +..|+.|++... .+
T Consensus        70 sAIMnP~~~iiALr-ag~~lQiFnl~~k~k--------lks~~~~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P  138 (1630)
T 1xi4_A           70 SAIMNPASKVIALK-AGKTLQIFNIEMKSK--------MKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQP  138 (1630)
T ss_pred             hhccCCCcceEEEe-cCCeEEEeehHHhhh--------hcccccCCCceEEEecCC-CeeEEEc-CCeEEEeccCCCCcc
Confidence            44567877766654 367899999987764        333333456666667544 4555555 567999999643 33


Q ss_pred             ecccccCC----ccEEEEEecCCCcEEEEEe-------CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          147 ILDEPKAH----KSVLDMDFSLDSEFLATTS-------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       147 ~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      ...+..|.    ..|..-..+++.++++..+       ..|.+.+|..+.+.. +.+.+|.. ....+....+.....++
T Consensus       139 ~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~-~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAA-SFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             HHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHh-hhheeccCCCCCCceEE
Confidence            33333332    3577777788888877544       346788888764332 22222211 11111111111101122


Q ss_pred             EEEEe-CCcceEEEEEccCc---eEe------eeeec---cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          216 CTVQR-GDKALLAVYDISTW---NKI------GHKRL---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       216 ~~~~~-~~~~~i~~~d~~~~---~~~------~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      +++.. ...+.+++.++...   .+.      ..+..   ...-..++..|+.-..+..-+.-|.|++||+.++..+..-
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence            22222 22368888887543   110      00111   1233456777887778888889999999999998877643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.68  E-value=0.13  Score=41.19  Aligned_cols=95  Identities=7%  Similarity=0.100  Sum_probs=46.2

Q ss_pred             CCCeEEEEecC-CcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEeeCCCEEEEeec-C---------CeEEEEeC
Q 022184           74 SGDDFVCSTTN-GGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGV-D---------GHLRIMHW  141 (301)
Q Consensus        74 ~~~~l~~~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~v~d~  141 (301)
                      +++.++.|+.+ ..+.+||+..........    ..+. ....-.+++ .-++++++.|+. +         ..+.+||+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~----~~~p~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~   93 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTAL----AAFPGGPRDQATSA-FIDGNLYVFGGIGKNSEGLTQVFNDVHKYNP   93 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEEC----CCCTTCCCBSCEEE-EETTEEEEECCEEECTTSCEEECCCEEEEET
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeEC----CCCCCCcCccceEE-EECCEEEEEcCCCCCCCccceeeccEEEEeC
Confidence            56666666543 467778875422222211    1111 111111222 236777777775 2         46888998


Q ss_pred             CCcceec--ccc-cCCccEEEEEecCCCcEEEEEeCC
Q 022184          142 PSLRIIL--DEP-KAHKSVLDMDFSLDSEFLATTSTD  175 (301)
Q Consensus       142 ~~~~~~~--~~~-~~~~~i~~~~~~~~~~~l~~~~~d  175 (301)
                      .+.+-..  .+. ........+.  .++++++.|+.+
T Consensus        94 ~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           94 KTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             TTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             CCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            7765322  121 1111222222  467788888754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.57  E-value=0.36  Score=42.62  Aligned_cols=108  Identities=11%  Similarity=0.068  Sum_probs=60.6

Q ss_pred             CCCeEEEEecC------CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC--eEEEEeCCCcc
Q 022184           74 SGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLR  145 (301)
Q Consensus        74 ~~~~l~~~~~d------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~v~d~~~~~  145 (301)
                      +++.++.|+.+      ..+.+||..+..-..      ...+.....-.+++.-.++++++.|+.++  .+.+||..+.+
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~------~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~  524 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSM------IKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI  524 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEE------CCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEE------CCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence            67777777654      357778876653211      11111111112233323788888887654  68999987765


Q ss_pred             eecc-----cccCCccEEEEEecCC-CcEEEEEeC--C-----CcEEEEeCCCCc
Q 022184          146 IILD-----EPKAHKSVLDMDFSLD-SEFLATTST--D-----GSARIWKTEDGV  187 (301)
Q Consensus       146 ~~~~-----~~~~~~~i~~~~~~~~-~~~l~~~~~--d-----~~i~i~d~~~~~  187 (301)
                      -...     ..........+.+..+ ++.++.|+.  +     ..+.+||+.+..
T Consensus       525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            3221     1111112233555655 677777775  2     358899998876

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.55  E-value=0.19  Score=39.31  Aligned_cols=138  Identities=10%  Similarity=-0.007  Sum_probs=70.6

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC--------CcEEEEEEcCCccccccccccCCCC
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--------GGCKLFEVYGGATDINLLAKKMPPL  109 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--------~~i~~w~~~~~~~~~~~~~~~~~~~  109 (301)
                      .+|.+++....+...+.......+|    ..+.+  +++.++.|+.+        ..+.+||..+.+-.  .    ...+
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~--~----~~~~  135 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSPRCLF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG--E----SDPL  135 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSCEESC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE--E----CCCC
T ss_pred             ceEEecCCCCeEEECCCCCcchhce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe--E----CCCC
Confidence            3788888877765432221111111    12222  56666666632        45888887765421  1    1111


Q ss_pred             CCCCCeeEEEEeeCCCEEEEeec-C-----CeEEEEeCCCcceec--ccccCCccEEEEEecCCCcEEEEEeCCC-----
Q 022184          110 QDAGPQKCLSFSVDGSRFAAGGV-D-----GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDG-----  176 (301)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~~-d-----g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----  176 (301)
                      .....-.+++ ..++++++.|+. +     ..+.+||+.+.+-..  .+.........+.+  ++++++.|+.++     
T Consensus       136 p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~  212 (315)
T 4asc_A          136 PYVVYGHTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTS  212 (315)
T ss_dssp             SSCCBSCEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEE
T ss_pred             CCcccceeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccc
Confidence            1111111222 246777788875 2     468899987654321  12111111222222  677888887654     


Q ss_pred             cEEEEeCCCCceEE
Q 022184          177 SARIWKTEDGVAWT  190 (301)
Q Consensus       177 ~i~i~d~~~~~~~~  190 (301)
                      .+.+||+.+.+-..
T Consensus       213 ~~~~yd~~~~~W~~  226 (315)
T 4asc_A          213 SAEVYSITDNKWAP  226 (315)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             eEEEEECCCCeEEE
Confidence            48889988775433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.43  E-value=0.42  Score=45.31  Aligned_cols=207  Identities=11%  Similarity=0.031  Sum_probs=111.7

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-------cCCe
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-------VDGH  135 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~dg~  135 (301)
                      ..+|.-=.|-... .|+..+ +..|+-|++.+...+.+...+.. .+. ...|..-.-+++.++++..+       -.|.
T Consensus       105 ~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~-~L~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~  180 (1630)
T 1xi4_A          105 TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS-SLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGA  180 (1630)
T ss_pred             CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch-hcc-cCeeEEeeeCCCCCeEEEEeeccCCCcccce
Confidence            3457777775433 454443 45599999987555444444322 221 35566667788888876433       3488


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEec--C-CCcEEEEEeC---CCcEEEEeCCCC---ceEE-----EEeecC---CC
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFS--L-DSEFLATTST---DGSARIWKTEDG---VAWT-----FLTRNS---DE  198 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~l~~~~~---d~~i~i~d~~~~---~~~~-----~~~~~~---~~  198 (301)
                      +.+|..+.+.. +.+.+|......+...  + ..+.++.+..   .+.++|-++...   .+..     .+..+.   ..
T Consensus       181 mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~D  259 (1630)
T 1xi4_A          181 MQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND  259 (1630)
T ss_pred             eeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccC
Confidence            89998765443 3444554433222221  1 1223333322   367888887442   1100     000000   11


Q ss_pred             CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~  278 (301)
                      -..++..++....     +..-+.-|.|++||+.++.++..-+....+|...+-+....-++.....|.|.--.+.....
T Consensus       260 fpv~~~vs~k~g~-----iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          260 FPVAMQISEKHDV-----VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             cceEEEeccccCE-----EEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence            1234445554443     34445678999999999998766555556665555444433444445667666666655443


Q ss_pred             e
Q 022184          279 N  279 (301)
Q Consensus       279 ~  279 (301)
                      +
T Consensus       335 v  335 (1630)
T 1xi4_A          335 I  335 (1630)
T ss_pred             h
Confidence            3

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.27  E-value=0.16  Score=39.78  Aligned_cols=136  Identities=9%  Similarity=-0.029  Sum_probs=67.4

Q ss_pred             EeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC-------CcEEEEEEcCCccccccccccCCCCCC
Q 022184           39 IFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-------GGCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        39 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-------~~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      +|.+++....+...+.....    ...-..+.+  +++.++.|+.+       ..+.+||+.+.+-.  ...    .+..
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~----r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~--~~~----~~p~  147 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSA----RCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS--EVK----NLPI  147 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSC----BCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE--EEC----CCSS
T ss_pred             EEEEeCCCCcEEECCCCCcc----ccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEe--ECC----CCCC
Confidence            78888877776543221111    111122222  56677777653       24667776654321  111    1111


Q ss_pred             CCCeeEEEEeeCCCEEEEeecC------CeEEEEeCCCcceec--ccccCCccEEEEEecCCCcEEEEEeCCC-----cE
Q 022184          112 AGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDG-----SA  178 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d------g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i  178 (301)
                      ...-.+++ ..++++++.|+.+      ..+.+||+.+.+-..  .+.........+.+  ++++++.|+.++     .+
T Consensus       148 ~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~  224 (318)
T 2woz_A          148 KVYGHNVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASV  224 (318)
T ss_dssp             CEESCEEE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEE
T ss_pred             cccccEEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceE
Confidence            11111222 2467777777642      458899987764321  12111111122222  577777776543     47


Q ss_pred             EEEeCCCCceE
Q 022184          179 RIWKTEDGVAW  189 (301)
Q Consensus       179 ~i~d~~~~~~~  189 (301)
                      .+||+.+.+-.
T Consensus       225 ~~yd~~~~~W~  235 (318)
T 2woz_A          225 EAFDLKTNKWE  235 (318)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEECCCCeEE
Confidence            78898876543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.24  E-value=0.42  Score=39.82  Aligned_cols=111  Identities=13%  Similarity=0.101  Sum_probs=60.4

Q ss_pred             CcceEEEECCCCC-eEEEEecCCcEEEEEEcCCccccccccccCCCC------CCCCCeeEEEEeeC----CCEEEEeec
Q 022184           64 GDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL------QDAGPQKCLSFSVD----GSRFAAGGV  132 (301)
Q Consensus        64 ~~v~~~~~~~~~~-~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~----~~~l~~~~~  132 (301)
                      .....|+|.|+|. .|+++.+.|.|++++.........+.. ....+      ........|+|+|+    +.+.++-+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~-~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLD-IHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEE-CTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecC-CcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            3467999999996 566667889999886433211111111 01111      12467889999995    443333222


Q ss_pred             --C----------CeEEEEeCCCc----------ceecccc--cCCccEEEEEecCCCcEEEEEeCC
Q 022184          133 --D----------GHLRIMHWPSL----------RIILDEP--KAHKSVLDMDFSLDSEFLATTSTD  175 (301)
Q Consensus       133 --d----------g~i~v~d~~~~----------~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d  175 (301)
                        +          ..|.-|.+..+          +.+..+.  ........|+|.|||.++++.+..
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence              1          13444554321          1222221  111235789999999877776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.08  E-value=0.69  Score=40.83  Aligned_cols=201  Identities=10%  Similarity=0.043  Sum_probs=102.2

Q ss_pred             CCCCeEEEEecC----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecC------CeEEEEeC
Q 022184           73 PSGDDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD------GHLRIMHW  141 (301)
Q Consensus        73 ~~~~~l~~~~~d----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------g~i~v~d~  141 (301)
                      .++..++.|+.+    ..+.+||..+..-.................-.+++..+ ++++++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777643    46888898776432111000000011111122333333 77778888754      35788898


Q ss_pred             CCccee--cccccCCccEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceEEEEe---ecCC-CCeeEEEEccCCCcce
Q 022184          142 PSLRII--LDEPKAHKSVLDMDFSLDSEFLATTSTDG--SARIWKTEDGVAWTFLT---RNSD-EKIELCRFSKDGTKPF  213 (301)
Q Consensus       142 ~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~---~~~~-~~v~~~~~~~~~~~~~  213 (301)
                      .+.+-.  ..+......- +++.-.+++.++.|+.++  .+.+||+.+.+-...-.   .+.. .....+.+..+...++
T Consensus       476 ~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            775432  2222111122 222323788888887654  68999998765433221   1111 1122355555534332


Q ss_pred             EEEEEEeCC-------cceEEEEEccCce--------Eeeeee-ccCCCcEEEEEcCCCCEEEEeeC--------CCcEE
Q 022184          214 LFCTVQRGD-------KALLAVYDISTWN--------KIGHKR-LLRKPASVLSISLDGKYLAMGSK--------DGDIC  269 (301)
Q Consensus       214 ~~~~~~~~~-------~~~i~~~d~~~~~--------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~--------d~~i~  269 (301)
                          +.|+.       -..+.+||+.+.+        .+.... ...... +++...++++++.|+.        ...+.
T Consensus       555 ----v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          555 ----ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             ----EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             ----EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence                33333       2468899987765        111111 111122 2233333778888874        34699


Q ss_pred             EEeCCCceee
Q 022184          270 VVDVKKMEIN  279 (301)
Q Consensus       270 i~~~~~~~~~  279 (301)
                      +||+.+.+..
T Consensus       630 ~yd~~t~~W~  639 (695)
T 2zwa_A          630 SLDPLSETLT  639 (695)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECCCCeEE
Confidence            9999877644

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.045  Score=43.42  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=69.8

Q ss_pred             CEEEEeecCCeEEEEeCCCcceecccccCC-ccEEEEEec--C-CCcEEEEE-eCCCcEEEEeCCCCceEEEEeecCCCC
Q 022184          125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFS--L-DSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEK  199 (301)
Q Consensus       125 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~--~-~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~  199 (301)
                      .++++++.||.|.-+|..+|+...++.... .++....-.  + ++..++.. +.||.+..++..+|.....+....-..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            378889999999999999998877665431 222221100  1 23334343 589999999998886554443221000


Q ss_pred             eeEEEE------------ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          200 IELCRF------------SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       200 v~~~~~------------~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      ...+..            +.++.      +++++.++++...|+++|+.+..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~------Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEK------VYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC----------CCEE------EEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccccCCE------EEEEecCCEEEEEECCCCcEEEEEec
Confidence            011111            12332      67889999999999999998866643

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.88  E-value=0.088  Score=44.45  Aligned_cols=100  Identities=11%  Similarity=0.022  Sum_probs=64.7

Q ss_pred             cEEEEEecCCCcEEEEEe-CCCcEEEEeCCCC------ce-------EEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184          156 SVLDMDFSLDSEFLATTS-TDGSARIWKTEDG------VA-------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~------~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                      ....+..+|||++++.++ .+.++.++|.+.-      +.       .....  -+-.....+|.++|.-     ..+--
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~a-----YTtlf  396 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGNA-----YTTLF  396 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSEE-----EEEET
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCce-----Eeeee
Confidence            345788999999888776 5778999998741      11       22222  2334778899999942     24445


Q ss_pred             CcceEEEEEccCc----------eEeeeeeccCCCcEEEEE------cCCCCEEEEee
Q 022184          222 DKALLAVYDISTW----------NKIGHKRLLRKPASVLSI------SLDGKYLAMGS  263 (301)
Q Consensus       222 ~~~~i~~~d~~~~----------~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~  263 (301)
                      -|.+|.-|++...          ..+..+..|-.+ -.+.-      .|||++|++..
T Consensus       397 idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          397 IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred             ecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence            7889999998753          233444444332 22222      57899999875

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.47  E-value=1.3  Score=39.46  Aligned_cols=214  Identities=9%  Similarity=0.011  Sum_probs=120.3

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      ...|.++....+| .|..++.+| +..||..+.....     ...  .....|.++.. .++ .|..++.+ -+..+|..
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~-----~~~--~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~  129 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ-----PET--DFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQ  129 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC-----CSC--CCCSCEEEEEE-ETT-EEEEEETT-EEEEEETT
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC-----ccc--CCCceEEEEEe-cCC-cEEEEcCC-cceeEeCC
Confidence            4568888877766 566666666 8889876653311     000  11234666654 455 56666655 57888876


Q ss_pred             Ccceecc--c--ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-----CCCeeEEEEccCCCcce
Q 022184          143 SLRIILD--E--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPF  213 (301)
Q Consensus       143 ~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~  213 (301)
                      +++...-  .  ......|.++...+++.+.+ ++. +-+..++..+++.. .+....     ...|.++...+++..+ 
T Consensus       130 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~l-  205 (758)
T 3ott_A          130 SRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCV-  205 (758)
T ss_dssp             TCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEE-
T ss_pred             CCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEE-
Confidence            6543211  0  01234688888888887555 344 34778887766532 222111     1237777777776642 


Q ss_pred             EEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc------cccc
Q 022184          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK------RLHL  287 (301)
Q Consensus       214 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------~~~~  287 (301)
                          ..+. ++-+..+|..+++...........|.++...++|.+.+. +.+ -+.+++..+.+......      ... 
T Consensus       206 ----Wigt-~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~-  277 (758)
T 3ott_A          206 ----WIGT-EGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQHIIHDSRNIQSLT-  277 (758)
T ss_dssp             ----EEEE-EEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCEEECCCTTCTTSCS-
T ss_pred             ----EEEE-CCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEEEEEcCCCCcCcCC-
Confidence                2233 235888998776543221222345788888888765544 444 48888887654322110      011 


Q ss_pred             CccEEEEEEccCC
Q 022184          288 GTSIALVEFCPTQ  300 (301)
Q Consensus       288 ~~~v~~~~~spdg  300 (301)
                      ...|.++....+|
T Consensus       278 ~~~i~~i~~D~~g  290 (758)
T 3ott_A          278 NNIIWNIFADQEH  290 (758)
T ss_dssp             CSCEEEEEECTTC
T ss_pred             cCeEEEEEEcCCC
Confidence            3457777666655

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.17  E-value=1.2  Score=37.09  Aligned_cols=108  Identities=12%  Similarity=0.121  Sum_probs=60.8

Q ss_pred             ccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCc---eEEEEe----e----cCCCCeeEEEEccC---CCcceEEEEEE
Q 022184          155 KSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGV---AWTFLT----R----NSDEKIELCRFSKD---GTKPFLFCTVQ  219 (301)
Q Consensus       155 ~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~---~~~~~~----~----~~~~~v~~~~~~~~---~~~~~~~~~~~  219 (301)
                      ...+.|+|.||+. .|+.+...|.|++++.....   .+..+.    .    ........++|+|+   ..++|+  ..+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv--~yt   91 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYV--SYT   91 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEE--EEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEE--EEe
Confidence            3567899999996 45566788999999754321   122211    0    01234788999997   333333  222


Q ss_pred             eCCc----------ceEEEEEccC----------ceEeeeee--ccCCCcEEEEEcCCCCEEEEeeC
Q 022184          220 RGDK----------ALLAVYDIST----------WNKIGHKR--LLRKPASVLSISLDGKYLAMGSK  264 (301)
Q Consensus       220 ~~~~----------~~i~~~d~~~----------~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~  264 (301)
                      ...+          ..|.-|.+..          .+.+..+.  ...+....|.|.|||.+.++.+.
T Consensus        92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            2211          2454455532          12222222  22345688999999987666554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.10  E-value=0.61  Score=39.53  Aligned_cols=123  Identities=10%  Similarity=0.070  Sum_probs=73.9

Q ss_pred             CcceEEEECCCCCeEEEEec-CCcEEEEEEcCCcccc-----ccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEE
Q 022184           64 GDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDI-----NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~-d~~i~~w~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (301)
                      .....+..+|||++++.++. +.++.+++++.-....     .............-.....+|.++|....+---|..|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            45678899999999987764 6899999997532100     00000001111234568899999995445555799999


Q ss_pred             EEeCCCc----------ceecccccCCccEEEEEe------cCCCcEEEEEe---CCCc----------EEEEeCCCCc
Q 022184          138 IMHWPSL----------RIILDEPKAHKSVLDMDF------SLDSEFLATTS---TDGS----------ARIWKTEDGV  187 (301)
Q Consensus       138 v~d~~~~----------~~~~~~~~~~~~i~~~~~------~~~~~~l~~~~---~d~~----------i~i~d~~~~~  187 (301)
                      -|++...          ..+.++..|..+ -.+.-      .|||++|++..   .|+.          -.+.|+...+
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk  480 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE  480 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred             EEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence            9998643          222233333222 22222      57899999875   4443          3677775433

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.95  E-value=6.2  Score=37.17  Aligned_cols=113  Identities=12%  Similarity=-0.017  Sum_probs=69.2

Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec-ccccCCccEEEEEecCC------CcEEEEEeC-CCcEEEEeCC
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-DEPKAHKSVLDMDFSLD------SEFLATTST-DGSARIWKTE  184 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~------~~~l~~~~~-d~~i~i~d~~  184 (301)
                      ..|...+.+  +..++.++ ++.+.++.+..++... ....-...|.|+++.|.      +++++.|.. |++++|+++.
T Consensus       514 ~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          514 KNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             CCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence            345555543  34666665 6788888776543211 11122457999999863      368888886 9999999999


Q ss_pred             CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184          185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (301)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  231 (301)
                      +.+.+..........+.++.+..-+..++   +..+-.||.+.-+.+
T Consensus       591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~---L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          591 SFELLHKEMLGGEIIPRSILMTTFESSHY---LLCALGDGALFYFGL  634 (1158)
T ss_dssp             TCCEEEEEECCSSCCEEEEEEEEETTEEE---EEEEETTSEEEEEEE
T ss_pred             CCCeEEEEECCCCCCCcEEEEEEeCCCcE---EEEEeCCCeEEEEEE
Confidence            87766554433223455555443333333   456667887765554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=91.42  E-value=3.9  Score=31.41  Aligned_cols=187  Identities=10%  Similarity=-0.012  Sum_probs=93.5

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~  143 (301)
                      ..|..++...+. .++. . ||.|+.|-.........       .......|..++...+  ..+.-. +|.|+.|-...
T Consensus        63 ~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~-------P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~  129 (282)
T 3qhy_B           63 SGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV-------PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDS  129 (282)
T ss_dssp             SCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC-------CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCT
T ss_pred             CCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC-------CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCC
Confidence            357777775433 2333 4 89999998654332111       0011245666665433  334445 89999997654


Q ss_pred             cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc
Q 022184          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (301)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  223 (301)
                      ...+-........|..++...+...+  -. ||.+..|-......+. ........|..++......      ++.  .+
T Consensus       130 ~gqlg~~~~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs------~al--~~  197 (282)
T 3qhy_B          130 DGQTTVPAEAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHS------LAL--KD  197 (282)
T ss_dssp             TSTTSCCGGGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEE------EEE--ET
T ss_pred             CCcCCCCccCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEE------EEE--EC
Confidence            22211111122457777655333222  33 7888888754322111 1111122355555443322      222  48


Q ss_pred             ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~  278 (301)
                      +.|..|=......+.........|..++...+. .++ -. ||.|+.|=.....+
T Consensus       198 G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~a-l~-~g~v~~wG~n~~gq  249 (282)
T 3qhy_B          198 GKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLA-LK-NGKVIAWGSSRTAP  249 (282)
T ss_dssp             TEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEE-EE-TTEEEEESTTCCCC
T ss_pred             CeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEE-EE-CCEEEEecCCCCcc
Confidence            889999755432221111112346666654432 233 33 88999997665433

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.31  E-value=8.8  Score=35.32  Aligned_cols=38  Identities=13%  Similarity=0.131  Sum_probs=33.4

Q ss_pred             cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe
Q 022184          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  193 (301)
                      .+.+++..++..++++.+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46777888888899999999999999999999988764

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=87.50  E-value=10  Score=30.63  Aligned_cols=161  Identities=6%  Similarity=-0.048  Sum_probs=84.5

Q ss_pred             eEEEEeCCCc--ceeccccc------CCccEEEEEec---CC----CcEEEEEe-CCCcEEEEeCCCCceEEEEee---c
Q 022184          135 HLRIMHWPSL--RIILDEPK------AHKSVLDMDFS---LD----SEFLATTS-TDGSARIWKTEDGVAWTFLTR---N  195 (301)
Q Consensus       135 ~i~v~d~~~~--~~~~~~~~------~~~~i~~~~~~---~~----~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~---~  195 (301)
                      .|.+||+.+.  +.++++.-      ....+..+.+.   |+    +.++..+. ....|.++|+.+++..+.+..   .
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            4667777777  65544321      23467788877   32    33433333 467899999999887665521   0


Q ss_pred             C--------------CCCeeEEEEccC----CCcceEEEEEEeCCcceEEEEE---ccCce---EeeeeeccC---CCcE
Q 022184          196 S--------------DEKIELCRFSKD----GTKPFLFCTVQRGDKALLAVYD---ISTWN---KIGHKRLLR---KPAS  248 (301)
Q Consensus       196 ~--------------~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~d---~~~~~---~~~~~~~~~---~~v~  248 (301)
                      .              ...+..++++|+    ++.+|+  ...++  ..+.--.   ++...   .+..+ +.+   ..-.
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf--~plss--~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~  278 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYY--LAGSA--IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAI  278 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEE--EESSC--SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEE--EECCC--CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcc
Confidence            0              124777888887    555332  12221  1222222   11111   11111 112   2233


Q ss_pred             EEEEc-CCCCEEEEeeCCCcEEEEeCCC-c---eeeccccccccCccEEEEEEccCC
Q 022184          249 VLSIS-LDGKYLAMGSKDGDICVVDVKK-M---EINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       249 ~~~~s-~~~~~l~~~~~d~~i~i~~~~~-~---~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                      .++++ .+|.++++--..+.|..|+..+ .   +....+.....-..+..+.+.++|
T Consensus       279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g  335 (381)
T 3q6k_A          279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKG  335 (381)
T ss_dssp             EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTS
T ss_pred             eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCC
Confidence            56675 6787777777788999999876 1   111111111113456777776665

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=86.95  E-value=8.8  Score=29.41  Aligned_cols=183  Identities=10%  Similarity=-0.028  Sum_probs=91.0

Q ss_pred             cceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc
Q 022184           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  144 (301)
                      .|..++....  +.+.-. ||.++.|-.........       .......|..++...+. .++. . ||.|+.|-....
T Consensus        25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~-------p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~   91 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTM-------PAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNED   91 (282)
T ss_dssp             SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSC-------CGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTT
T ss_pred             CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCC-------CccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCC
Confidence            5777777533  223234 89999998654432111       00112356666654332 2333 4 899999976532


Q ss_pred             ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc
Q 022184          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (301)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  224 (301)
                      ..+-.-......|..++...+  +.+... ||.|..|-......+- ........|..++......      ++. . ++
T Consensus        92 Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~~------~~l-~-~G  159 (282)
T 3qhy_B           92 GQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYTA------LAV-K-NG  159 (282)
T ss_dssp             STTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEE------EEE-E-TT
T ss_pred             CCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCEE------EEE-E-CC
Confidence            211111111246777776544  333334 8999999765322111 0111122355554433321      122 2 68


Q ss_pred             eEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                      .|..|-......+.........|..++...+- .++.  .||.|+.|=...
T Consensus       160 ~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~  207 (282)
T 3qhy_B          160 GVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNR  207 (282)
T ss_dssp             EEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCT
T ss_pred             EEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCC
Confidence            88888765432222111123456666654332 2333  588999997654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=86.48  E-value=1.9  Score=37.08  Aligned_cols=55  Identities=18%  Similarity=0.315  Sum_probs=39.9

Q ss_pred             CcEEEEEcCCCCEEEEeeCC------------CcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          246 PASVLSISLDGKYLAMGSKD------------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       246 ~v~~~~~s~~~~~l~~~~~d------------~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..-.|+|+|.|++++.-..+            +.+.+.+..++++.+.+. .+....++.++|+|||+
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~-~P~gaE~TG~~fspDg~  543 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-GPIGCEVTGISFSPDQK  543 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE-CCTTCEEEEEEECTTSS
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe-CCCCccCcCeeECCCCC
Confidence            34679999999976665432            346677777787766553 34378899999999986

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=86.34  E-value=17  Score=32.17  Aligned_cols=180  Identities=8%  Similarity=0.008  Sum_probs=92.9

Q ss_pred             eEEE-EeeCCCEEEEee-----cCCeEEEEeCCCcceecccccC--Cc------cEEEEEecCCCcEEEEEe--------
Q 022184          116 KCLS-FSVDGSRFAAGG-----VDGHLRIMHWPSLRIILDEPKA--HK------SVLDMDFSLDSEFLATTS--------  173 (301)
Q Consensus       116 ~~~~-~s~~~~~l~~~~-----~dg~i~v~d~~~~~~~~~~~~~--~~------~i~~~~~~~~~~~l~~~~--------  173 (301)
                      ..+. ++|++++++.+-     +-..++++|+.+++.+..-...  +.      ....++|..+...+++..        
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~  211 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS  211 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence            4455 889998877642     2347999999998876432111  11      113447774444444321        


Q ss_pred             --CCCcEEEEeCCCC--ceEEEEeecCCCCeeEEEEccCCCcc--eEEEEEE-eCCcceEEEEEccC--ceEeeeeeccC
Q 022184          174 --TDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKP--FLFCTVQ-RGDKALLAVYDIST--WNKIGHKRLLR  244 (301)
Q Consensus       174 --~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~~~~~~i~~~d~~~--~~~~~~~~~~~  244 (301)
                        ....|+.|.+-+.  +-...+.............++++++.  ++++... ......+.+.|...  ++.. .+....
T Consensus       212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~  290 (711)
T 4hvt_A          212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPS  290 (711)
T ss_dssp             TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCT
T ss_pred             CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCC
Confidence              1245888887654  23334443333323345667787753  1221122 23346677777653  3322 222222


Q ss_pred             CCcEEEEEcCCCCEEEEee----------CCCcEEEEeCCCcee-------ec-cccccccCccEEEEEEccC
Q 022184          245 KPASVLSISLDGKYLAMGS----------KDGDICVVDVKKMEI-------NH-WSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~----------~d~~i~i~~~~~~~~-------~~-~~~~~~~~~~v~~~~~spd  299 (301)
                      .  ..+..++++.+++...          ..+.|...++.++..       .+ .+.... ...+..+.|..+
T Consensus       291 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~  360 (711)
T 4hvt_A          291 D--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA-NEVFNFISTTKD  360 (711)
T ss_dssp             T--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT-TEEEEEEEECSS
T ss_pred             c--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC-CCeEEEEEEECC
Confidence            2  2233455666655331          357799999876421       11 121222 456777777764

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=86.31  E-value=3.8  Score=35.28  Aligned_cols=58  Identities=17%  Similarity=0.150  Sum_probs=43.4

Q ss_pred             cEEEEEecCCCcEEEEEeCC------------CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcce
Q 022184          156 SVLDMDFSLDSEFLATTSTD------------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (301)
                      ..-.|+|+|.|++++.-..+            ..+.+.+..+++....+..+....++.++|+||++.+|
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlf  546 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEE
Confidence            35678999999866654432            24666677778877777777777899999999999744

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=85.31  E-value=12  Score=29.44  Aligned_cols=120  Identities=14%  Similarity=0.109  Sum_probs=73.7

Q ss_pred             CCcceEEE-ECC--CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184           63 EGDPMTIA-VNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (301)
Q Consensus        63 ~~~v~~~~-~~~--~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  139 (301)
                      ...|.++. ..+  +..+++..+.+|.++-..+.......+ .......+.....+..+........|+..+..|.+..+
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf  172 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRF  172 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence            34455554 332  577899999999999888765433211 01111122234556666655566678888889998887


Q ss_pred             eCC--Ccc---------eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 022184          140 HWP--SLR---------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE  184 (301)
Q Consensus       140 d~~--~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  184 (301)
                      ...  .-.         ....+ .....|.++...+++..++..+..|.++.-.+.
T Consensus       173 ~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~  227 (327)
T 3uc1_A          173 SATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIE  227 (327)
T ss_dssp             ECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred             ECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence            765  211         11122 223457776666666788888999998887764

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=83.82  E-value=7.8  Score=33.14  Aligned_cols=60  Identities=15%  Similarity=0.145  Sum_probs=41.9

Q ss_pred             ccEEEEEecCCCcEEEEEeC------------CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184          155 KSVLDMDFSLDSEFLATTST------------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (301)
                      .....|.|.++|.+.+....            ...+..++..+++....+..+....++.++|+||++.+|+
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV  547 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV  547 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEE
Confidence            35678999999987663321            1256777777787666565444456899999999997543

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=83.65  E-value=14  Score=28.83  Aligned_cols=197  Identities=13%  Similarity=0.051  Sum_probs=108.3

Q ss_pred             CCCCeEEEEecCCcEEEEEEcCCcccccc-ccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC---C-----
Q 022184           73 PSGDDFVCSTTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP---S-----  143 (301)
Q Consensus        73 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~---~-----  143 (301)
                      ++.+++++.+.+|.|+-..+........- .......+.....+..+........++..+..|.++-+...   .     
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~   85 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS   85 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence            45667888899999998776544321110 00001112334556666666666778888889987766542   1     


Q ss_pred             -ccee---cccccCCccEEEEEecC---CCcEEEEEeCCCcEEEEeCCCCce-----EEEEeecCCCCeeEEEEccCCCc
Q 022184          144 -LRII---LDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVA-----WTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       144 -~~~~---~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                       |..+   ..+. ....|..+...+   +..+++..+..|.++...+..-..     +..+....+..+-.+........
T Consensus        86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~  164 (312)
T 1suu_A           86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEK  164 (312)
T ss_dssp             --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCE
T ss_pred             CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCE
Confidence             1111   1121 223455554332   456788889999999888743211     11122222334555544433443


Q ss_pred             ceEEEEEEeCCcceEEEEEccCceE-------eeeeec-cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWNK-------IGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~  275 (301)
                           ++..+.+|.+..++...-..       +..+.. ....+..+..-.++..+++.+..|..+..++..
T Consensus       165 -----i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          165 -----VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             -----EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             -----EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence                 45566788888887654211       111111 134555655545566788888899988888754

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=81.52  E-value=5.3  Score=34.12  Aligned_cols=56  Identities=16%  Similarity=0.283  Sum_probs=39.1

Q ss_pred             CCcEEEEEcCCCCEEEEeeC------------CCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          245 KPASVLSISLDGKYLAMGSK------------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~~------------d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .....|.|+++|.+.++...            .+.|..++..++++...+.... ...++.++|+||++
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~-~aEpnGiafSPD~k  543 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFSPDQK  543 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEECTTSS
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC-CccccCCEECCCCC
Confidence            34678999999987774321            2257777887887666552222 46799999999985

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=81.10  E-value=20  Score=28.87  Aligned_cols=145  Identities=8%  Similarity=-0.031  Sum_probs=74.1

Q ss_pred             CCCEEEEeecCCeEEEEeCCCcce-----------eccccc-CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc---
Q 022184          123 DGSRFAAGGVDGHLRIMHWPSLRI-----------ILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV---  187 (301)
Q Consensus       123 ~~~~l~~~~~dg~i~v~d~~~~~~-----------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---  187 (301)
                      .....+.-..||.|+.|-....-.           ...+.. ....+..++.+.-..+.+....||.|..|-.....   
T Consensus        61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG  140 (389)
T 3kci_A           61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG  140 (389)
T ss_dssp             ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTC
T ss_pred             CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCC
Confidence            344556667789999986432110           011111 11244556666666677777889999999643210   


Q ss_pred             --------eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-----------Eeeeeec-cCCCc
Q 022184          188 --------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-----------KIGHKRL-LRKPA  247 (301)
Q Consensus       188 --------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----------~~~~~~~-~~~~v  247 (301)
                              ....+.......|..++...  .+     .+.-..+|.|..|-....-           ....+.. ....+
T Consensus       141 ~g~~~~~~~p~~v~~l~~~~i~~va~G~--~h-----s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v  213 (389)
T 3kci_A          141 HGNRSPCDRPRVIESLRGIEVVDVAAGG--AH-----SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRV  213 (389)
T ss_dssp             SSSCCCEEEEEECGGGTTSCEEEEEECS--SE-----EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCE
T ss_pred             CCCCccCcCCeEecccCCCeEEEEEeCc--Ce-----EEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeE
Confidence                    11111111122344444432  22     2334567889888643210           0111111 22346


Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          248 SVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       248 ~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      ..++......+.++-..||.|+.|-..
T Consensus       214 ~~ia~G~g~~~t~~l~~~G~v~~wG~n  240 (389)
T 3kci_A          214 VDIACGSGDAQTLCLTDDDTVWSWGDG  240 (389)
T ss_dssp             EEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred             EEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence            666654433566666788889988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.0 bits (154), Expect = 3e-12
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
             F   E D   I   P+G+ F   + +  C+LF++      +                 
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-----YSHDNIICGIT 274

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
            +SFS  G    AG  D +  +                  V  +  + D   +AT S D 
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334

Query: 177 SARIW 181
             +IW
Sbjct: 335 FLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 3e-09
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 6/150 (4%)

Query: 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT 183
              F +G  D   ++                  +  + F  +    AT S D + R++  
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 184 EDGVAWTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242
                    + ++    I    FSK G    L       D     V+D    ++ G    
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSG--RLLLAG---YDDFNCNVWDALKADRAGVLAG 310

Query: 243 LRKPASVLSISLDGKYLAMGSKDGDICVVD 272
                S L ++ DG  +A GS D  + + +
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (128), Expect = 7e-09
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 3/100 (3%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRI--MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA 170
                + F  +G+ FA G  D   R+  +      +          +  + FS     L 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286

Query: 171 TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
               D +  +W          L  + +  +     + DG 
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGM 325

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 27/228 (11%), Positives = 55/228 (24%), Gaps = 39/228 (17%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
                + +  D     +   DG L I    +   +   P     V+   ++    ++A  
Sbjct: 56  AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115

Query: 173 STDGSARIW------------KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT--- 217
             D    I+            +   G           +  ++   S D T          
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ 175

Query: 218 ------------------------VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS 253
                                   V     A   ++D+                + +   
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235

Query: 254 LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301
            +G   A GS D    + D++  +        ++   I  V F  + R
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (104), Expect = 5e-06
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 4/145 (2%)

Query: 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192
           D    +    + +           V+ +  + D+    + + D SA++W   +G+     
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI 252
           T +  + I    F  +G     F T        L                +    + +S 
Sbjct: 223 TGHESD-INAICFFPNGN---AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 253 SLDGKYLAMGSKDGDICVVDVKKME 277
           S  G+ L  G  D +  V D  K +
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKAD 303

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 6e-11
 Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 54/225 (24%)

Query: 64  GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD 123
           G          G      + +   ++++   G     L ++             + F+ D
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265

Query: 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAH------------KSVLDMDFSLDSEFLAT 171
           G    +G +D  +++ +  +     D    +              VL +  + + E++ +
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 325

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
            S D     W  + G     L  + +                             +V  +
Sbjct: 326 GSKDRGVLFWDKKSGNPLLMLQGHRN-----------------------------SVISV 356

Query: 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276
           +  N               S+  +    A GS D    +   KK+
Sbjct: 357 AVANGS-------------SLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 3e-08
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 11/133 (8%)

Query: 63  EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK-----KMPPLQDAGPQKC 117
           +    ++     G   V  + +   KL+ +       +         ++  +        
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD------FSLDSEFLAT 171
           ++ + +     +G  D  +      S   +L       SV+ +          +    AT
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 172 TSTDGSARIWKTE 184
            S D  ARIWK +
Sbjct: 374 GSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 26/175 (14%), Positives = 50/175 (28%), Gaps = 43/175 (24%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS------LRIILDEPKAHK-SVLDMDFSLD 165
           G         DG   AAG +D  +R+    +      L    +    HK SV  + F+ D
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265

Query: 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225
            + + + S D S ++W  ++                                        
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNA------------------------------------NNK 289

Query: 226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280
                 ++          +     ++ + + +Y+  GSKD  +   D K      
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 33/232 (14%), Positives = 63/232 (27%), Gaps = 25/232 (10%)

Query: 68  TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF 127
              ++        +        + +Y  A    +  +    L       C+ FS DG   
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 128 AAGGVDGHLRIMHWPSLRII------------------LDEPKAHKSVLDMDFSLDSEFL 169
           A G  +   ++       ++                     P +   +  + FS D +FL
Sbjct: 78  ATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136

Query: 170 ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229
           AT +        +                +            P     V       + ++
Sbjct: 137 ATGA------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190

Query: 230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281
           D+ T        +     +V     DGKY+A GS D  + V D +   +   
Sbjct: 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 1e-10
 Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 9/143 (6%)

Query: 40  FSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI 99
              D    S            +      ++   P+G+       +   ++  V       
Sbjct: 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---- 256

Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159
                K            L F+  G  F + G D  L     P    I  + K   SVL 
Sbjct: 257 ----DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLS 311

Query: 160 MDFSLDSEFLATTSTDGSARIWK 182
            D S+D +++ T S D  A +++
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 3/98 (3%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
                L +   G   A G    ++ ++H                +  + F+   ++  +T
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL-SLKFAYCGKWFVST 283

Query: 173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
             D     W+T  G   +         +  C  S D  
Sbjct: 284 GKDNLLNAWRTPYGA--SIFQSKESSSVLSCDISVDDK 319

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 6/94 (6%)

Query: 103 AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI-----MHWPSLRIILDEPKAHKSV 157
           A+++  L        ++ S        GG  G +++         S    LD       +
Sbjct: 42  ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYI 100

Query: 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF 191
                  D   L       +  IW          
Sbjct: 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.2 bits (136), Expect = 6e-10
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 2/175 (1%)

Query: 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHK-SVLDMDFSLDSEFLAT 171
           P  C +++ D ++ A    +  + I      + + + E K H   V  +D++ DS  + T
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
             TD +A +W  +       L      +   C       K F   +  R         + 
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286
             W     K+ +R     L    +   LA GS D    +      E+        
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 65  DPMT-IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD 123
           +P++  A N           N    ++E  G         +     +  G    + ++ D
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPD 62

Query: 124 GSRFAAGGVDGHLRIMHWP 142
            +R    G D +  +    
Sbjct: 63  SNRIVTCGTDRNAYVWTLK 81

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 13/70 (18%), Positives = 28/70 (40%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
              + + F   G    +   D  LR+  + + R +         V  +DF   + ++ T 
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307

Query: 173 STDGSARIWK 182
           S D + ++W+
Sbjct: 308 SVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (120), Expect = 6e-08
 Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 26/180 (14%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS------ 166
              + +  + DG+  A+   D  +R+    +     +  +    V  + ++ +S      
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 203

Query: 167 --------------EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212
                          FL + S D + ++W    G+    L  + +  +    F   G   
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVLFHSGG--K 260

Query: 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272
           F+       D   L V+D      +          + L       Y+  GS D  + V +
Sbjct: 261 FILSC---ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 4e-07
 Identities = 18/167 (10%), Positives = 46/167 (27%), Gaps = 14/167 (8%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-------- 108
             F         +  N  G      + +   +++ V        L   +           
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 109 -----LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163
                + +A   +       G    +G  D  +++    +   ++        V  + F 
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
              +F+ + + D + R+W  ++      L  +    +    F K   
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-VTSLDFHKTAP 302

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 22/168 (13%), Positives = 46/168 (27%), Gaps = 6/168 (3%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
            P   + F    S   +   D  +++  + +        K H   +       S  L  +
Sbjct: 18  SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-TLKGHTDSVQDISFDHSGKLLAS 76

Query: 173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232
            +           G          D  +       +G        V       + ++++ 
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-----HIVSASRDKTIKMWEVQ 131

Query: 233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280
           T   +      R+   ++  + DG  +A  S D  + V  V   E   
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 7/131 (5%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
             H+S V  + F      + + S D + ++W  E G     L  ++D   ++        
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD----- 68

Query: 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270
                          + ++D   +  I          S +SI  +G ++   S+D  I +
Sbjct: 69  -HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 271 VDVKKMEINHW 281
            +V+       
Sbjct: 128 WEVQTGYCVKT 138

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 12/158 (7%)

Query: 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS 173
             +  S   DG    +G +D  +R+    +   I            M+       L + +
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN 234

Query: 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233
            D + +IW  + G     L   +  +  +     +             D   + ++D+ T
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-----SDDGTVKLWDLKT 289

Query: 234 WNKI-----GHKRLLRKPASVLSISLDGKYLAMGSKDG 266
              I                 +  S      A+GS++G
Sbjct: 290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 14/146 (9%), Positives = 40/146 (27%), Gaps = 15/146 (10%)

Query: 45  KTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK 104
            +  V+       +   +    +T  +    +  V    +   K++++  G         
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC------L 250

Query: 105 KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----LDEPKAHKSVLD 159
           +     +           + +       DG +++    +   I     L+   +   V  
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310

Query: 160 MDFSLDSEFLATTSTDGSA----RIW 181
           +  S      A  S +G+      + 
Sbjct: 311 IRASNTKLVCAVGSRNGTEETKLLVL 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 8/122 (6%)

Query: 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216
                   D +    T+          E G       R  D        +   T+ F   
Sbjct: 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY 259

Query: 217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276
            V       L  +D+     I    L     SV ++S DG  + +G   GD+   D + +
Sbjct: 260 NV-------LESFDLEKNASIKRVPLPHSYYSV-NVSTDGSTVWLGGALGDLAAYDAETL 311

Query: 277 EI 278
           E 
Sbjct: 312 EK 313

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 10/137 (7%)

Query: 167 EFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225
           +++   +      +  TE   V       ++     +   +  G     + TV + +   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI--AYATVNKSES-- 57

Query: 226 LAVYDISTWNKIGHKRLLRKPASV-----LSISLDGKYLAMGSKDGDICVVDVKKMEINH 280
           L   D+ T   +G   L      V      ++S DGK LA+      + +   +      
Sbjct: 58  LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117

Query: 281 WSKRLHLGTSIALVEFC 297
                   +     E  
Sbjct: 118 ALYDAETLSRRKAFEAP 134

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 9/127 (7%)

Query: 67  MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD--------AGPQKCL 118
               +    + + CS+ +G   +        D N   +               A P   +
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257

Query: 119 SFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA 178
            FS         G DG +   +  + + I +  K ++    +  +     L   ++D + 
Sbjct: 258 EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-VVKIACSDNILCLATSDDTF 316

Query: 179 RIWKTED 185
           +     D
Sbjct: 317 KTNAAID 323

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 151 PKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK--IELCRFSK 207
            +A K  + D+        L  TS DGS  ++K +       L ++   K  +  C F  
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 208 DGTKPFLFCT 217
           +        T
Sbjct: 67  NTDLQIYVGT 76

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 36/269 (13%), Positives = 64/269 (23%), Gaps = 36/269 (13%)

Query: 39  IFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98
           I+  D  T        ++ V  E      + A++P G +   +                 
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 99  INL-------LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--- 148
           + +        AK +           +  + DGS + AG     + +        +    
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 149 -------------------DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189
                                 +         F  D +  AT            + G   
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243

Query: 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV 249
           T    +  E       S            +      LA YD+     I    L      V
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNR------LAKYDLKQRKLIKAANLDHTYYCV 297

Query: 250 LSISLDGKYLAMGSKDGDICVVDVKKMEI 278
            +    G  L +G    D+ V +   +E 
Sbjct: 298 -AFDKKGDKLYLGGTFNDLAVFNPDTLEK 325

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 5/144 (3%)

Query: 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA-RIWKTEDGVAWTF 191
           D  +    +  +      P    S         S        D +      +   V    
Sbjct: 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD 265

Query: 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS 251
                  +  +  +S      F        +K +L  YD+ T          +   + L 
Sbjct: 266 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV----KNNLTDLR 321

Query: 252 ISLDGKYLAMGSKDGDICVVDVKK 275
           +S D K + +   DG I    ++K
Sbjct: 322 LSADRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 6e-05
 Identities = 14/130 (10%), Positives = 30/130 (23%), Gaps = 4/130 (3%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
           +V     G P    + P          +             D       +P         
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
                   + +      G L      + ++     +   ++ D+  S D + +     DG
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 177 SARIWKTEDG 186
               +  E  
Sbjct: 337 KIYTFPLEKP 346

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 1/114 (0%)

Query: 72  NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131
           NP G  F  +  +G   L+    G          +  +  +G    L++S DG++ A+  
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257

Query: 132 VDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTE 184
            D  ++I +  +L++    P   +     +      + L + S +G       E
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 3/85 (3%)

Query: 108 PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDS 166
           P    G    L  +  G +         +  +   SL    +    H         S   
Sbjct: 13  PRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT-EIYTEHSHQTTVAKTSPSG 70

Query: 167 EFLATTSTDGSARIWKTEDGVAWTF 191
            + A+    G+ RIW T        
Sbjct: 71  YYCASGDVHGNVRIWDTTQTTHILK 95

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 7e-05
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTS 173
           +      ++    A G +D ++ I        I+    AHK  V ++ +   S  L ++ 
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG 276

Query: 174 TDGSARIWK 182
            D   + W 
Sbjct: 277 ADACIKRWN 285

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 4e-04
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 127 FAAGGVDGHLRI--MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIW 181
            A G +D  + +  M+ PS   I+ +     S ++    L+   + +   D + + W
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 5e-04
 Identities = 8/51 (15%), Positives = 17/51 (33%)

Query: 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205
           K++  +  S D + L +   +G    W    G++           I   + 
Sbjct: 13  KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 7/66 (10%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD 175
            ++           G +    I +  S +++          +  ++F      +A    D
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKD 344

Query: 176 GSARIW 181
           G + + 
Sbjct: 345 GQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 13/126 (10%), Positives = 39/126 (30%), Gaps = 5/126 (3%)

Query: 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
           + H + +      +  ++ T + D   R++ + +      L+ +    +   +++  G  
Sbjct: 9   RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG-VWALKYAHGGI- 66

Query: 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV 271
                +        +          +            +    + KY+  GS+D  + V 
Sbjct: 67  ---LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 272 DVKKME 277
            + K  
Sbjct: 124 KLPKES 129

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 21/167 (12%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK------SVLDMDFSLDSEFLA 170
            +  S  G   A G  +G ++I    +LR + +    H       S+  + FS     LA
Sbjct: 189 SVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 171 TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK----------PFLFCTVQR 220
                 S       +      +   S           +                      
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 221 GDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAMGS 263
           G    L  +D+ T  +I     H   +     +L++   G  LA   
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 13/128 (10%), Positives = 32/128 (25%), Gaps = 38/128 (29%)

Query: 151 PKAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
            KAH + +  +     + F  + S DG  ++W                         K  
Sbjct: 10  GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDN-----------------------KLL 44

Query: 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269
                             ++ +                ++   + +   +A  S  GD+ 
Sbjct: 45  DNENPKDKSYSHFVHKSGLHHVDVLQ------------AIERDAFELCLVATTSFSGDLL 92

Query: 270 VVDVKKME 277
              + + +
Sbjct: 93  FYRITRED 100

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 17/140 (12%), Positives = 43/140 (30%), Gaps = 3/140 (2%)

Query: 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192
           D  +++ +  +   +       + +  + +      + + S+D + R+W  E G     L
Sbjct: 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 214

Query: 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI 252
             + +    +   +K          ++  D                 + L+     V  +
Sbjct: 215 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC-LRTLVEHSGRVFRL 273

Query: 253 SLDGKYLAMGSKDGDICVVD 272
             D   +   S D  I + D
Sbjct: 274 QFDEFQIVSSSHDDTILIWD 293

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.75
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.63
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.48
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.46
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.46
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.45
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.43
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.41
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.41
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.4
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.37
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.32
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.29
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.26
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.25
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.22
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.15
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.13
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.94
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.78
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.76
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.51
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.13
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.08
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.07
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.02
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.93
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.69
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.68
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.26
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.26
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.03
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.02
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.91
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.73
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.72
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.71
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.69
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.66
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.66
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.61
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.49
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.33
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.19
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.91
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.58
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.55
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.29
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.17
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.55
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.25
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.35
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.77
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	85.05

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-42  Score=275.34  Aligned_cols=271  Identities=13%  Similarity=0.123  Sum_probs=228.9

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (301)
                      +...+|+|++|+|+   +.++|+|+       ++.|+||++......   .+.......+|.+.|.+++|+|++++|+++
T Consensus        49 ~H~~~V~~v~fs~~---g~~latg~-------dg~V~iWd~~~~~~~---~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~  115 (337)
T d1gxra_          49 NHGEVVCAVTISNP---TRHVYTGG-------KGCVKVWDISHPGNK---SPVSQLDCLNRDNYIRSCKLLPDGCTLIVG  115 (337)
T ss_dssp             CCSSCCCEEEECSS---SSEEEEEC-------BSEEEEEETTSTTCC---SCSEEEECSCTTSBEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCC---CCEEEEEE-------CCEEEEEEccCCccc---ceeEEeeecCCCCcEEEEEEcCCCCEEEEe
Confidence            45689999999988   67888843       556899998754422   222344567899999999999999999999


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      +.|+.|++||+.........     ....|...+.+++|+|++.++++++.|+.|++|++.+++.......|...+.+++
T Consensus       116 ~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~  190 (337)
T d1gxra_         116 GEASTLSIWDLAAPTPRIKA-----ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  190 (337)
T ss_dssp             ESSSEEEEEECCCC--EEEE-----EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             eccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999998765432111     1123567899999999999999999999999999999988888888889999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                      |++++..+++++.|+.+++||+++++.+..+.  +...+.+++|+|+++.     +++++.++.+++||+++.+.. ...
T Consensus       191 ~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~-----l~~~~~d~~i~i~d~~~~~~~-~~~  262 (337)
T d1gxra_         191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-----LAVGMESSNVEVLHVNKPDKY-QLH  262 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTSSCEE-EEC
T ss_pred             ccccccccccccccccccccccccceeecccc--cccceEEEEEcccccc-----cceeccccccccccccccccc-ccc
Confidence            99999999999999999999999999887775  3457999999999997     688899999999999988765 456


Q ss_pred             ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .|...|.+++|+|++++|++++.||.|++||+.+++.+...  .| ...|.+++|+|||+
T Consensus       263 ~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~-~~~v~~~~~s~d~~  319 (337)
T d1gxra_         263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KE-SSSVLSCDISVDDK  319 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--EC-SSCEEEEEECTTSC
T ss_pred             ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc--cC-CCCEEEEEEeCCCC
Confidence            78889999999999999999999999999999999888764  46 78999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.4e-41  Score=265.09  Aligned_cols=266  Identities=15%  Similarity=0.149  Sum_probs=213.5

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (301)
                      +.+.+++++|+   ++.++.+.       .+.+.+|+.+....        ...+.+|.+.|++++|+|+|++|++|+.|
T Consensus        18 ~~~~~~a~~~~---g~~l~~~~-------~~~v~i~~~~~~~~--------~~~~~~H~~~v~~~~~sp~g~~latg~~d   79 (311)
T d1nr0a1          18 GTAVVLGNTPA---GDKIQYCN-------GTSVYTVPVGSLTD--------TEIYTEHSHQTTVAKTSPSGYYCASGDVH   79 (311)
T ss_dssp             TCCCCCEECTT---SSEEEEEE-------TTEEEEEETTCSSC--------CEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEEcCC---CCEEEEEe-------CCEEEEEECCCCce--------eEEEcCCCCCEEEEEEeCCCCeEeccccC
Confidence            45567888876   44555533       23456777754321        23467899999999999999999999999


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec--CCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      |+|++||+..........     ...|..+|.+++|+|++++|++++.  +..+++|++++++....+..|...|.+++|
T Consensus        80 g~i~iwd~~~~~~~~~~~-----~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~  154 (311)
T d1nr0a1          80 GNVRIWDTTQTTHILKTT-----IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF  154 (311)
T ss_dssp             SEEEEEESSSTTCCEEEE-----EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE
T ss_pred             ceEeeeeeeccccccccc-----cccccCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999998876432211     1136789999999999999999875  456999999999988888888899999999


Q ss_pred             cCCCcE-EEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee-
Q 022184          163 SLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-  240 (301)
Q Consensus       163 ~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-  240 (301)
                      +|++++ |++++.|+.|++||+++++....+..+ ..+|.++.|+|+++.     +++++.|+.|++||.++++....+ 
T Consensus       155 ~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~-~~~i~~v~~~p~~~~-----l~~~~~d~~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPDGSL-----FASTGGDGTIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC-SSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTCCEEEECB
T ss_pred             cccceeeecccccccccccccccccccccccccc-cccccccccCccccc-----ccccccccccccccccccccccccc
Confidence            999885 888999999999999999988887765 457999999999997     688899999999999987765443 


Q ss_pred             ------eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc-cCccEEEEEEccC
Q 022184          241 ------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH-LGTSIALVEFCPT  299 (301)
Q Consensus       241 ------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~spd  299 (301)
                            .+|...|++++|+|++++|++|+.||.|+|||++++++++.+...+ ....+.++.|+++
T Consensus       229 ~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~  294 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ  294 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred             ccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCC
Confidence                  3467789999999999999999999999999999999888764322 0234566666654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-39  Score=255.87  Aligned_cols=272  Identities=12%  Similarity=0.120  Sum_probs=235.6

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ..++|+|++|+|+   ++++++|+      .|+.|++|++....        ....+.+|.+.|.+++|+|++.+++++.
T Consensus        16 H~~~I~~l~~sp~---~~~l~s~s------~Dg~i~iWd~~~~~--------~~~~~~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1          16 HRSPVTRVIFHPV---FSVMVSAS------EDATIKVWDYETGD--------FERTLKGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             CSSCEEEEEECSS---SSEEEEEE------SSSCEEEEETTTCC--------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCeEEEEEcCC---CCEEEEEe------CCCeEEEEECCCCC--------EEEEEeCCCCcEEEEeeecccccccccc
Confidence            4678999999987   67888865      67889999986433        1345788999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .++.+.+|+.......       .....+...+.++.|+|+++.+++++.|+.+++||+++++....+..+...+.+++|
T Consensus        79 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (317)
T d1vyhc1          79 ADMTIKLWDFQGFECI-------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP  151 (317)
T ss_dssp             TTSCCCEEETTSSCEE-------ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             cccccccccccccccc-------cccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeec
Confidence            9999999998766542       223346678999999999999999999999999999999988888888889999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE---------------EEEEEeCCcceEE
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL---------------FCTVQRGDKALLA  227 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------------~~~~~~~~~~~i~  227 (301)
                      +|++++|++++.|+.|++|++++++....+..+. ..+.++.|+|++....+               ..+.+++.|+.|+
T Consensus       152 ~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  230 (317)
T d1vyhc1         152 NQDGTLIASCSNDQTVRVWVVATKECKAELREHR-HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  230 (317)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             ccCCCEEEEEeCCCeEEEEeeccceeeEEEecCC-CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence            9999999999999999999999999988887654 46899999987643210               0257788999999


Q ss_pred             EEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +||+++++++..+..|...|.+++|+|++++|++++.||.|++||+++++++..+ .+| ..+|++++|+|||+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h-~~~V~~~~~s~~~~  302 (317)
T d1vyhc1         231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAH-EHFVTSLDFHKTAP  302 (317)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECC-SSCEEEEEECSSSS
T ss_pred             EEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE-cCC-CCCEEEEEEcCCCC
Confidence            9999999999999999999999999999999999999999999999999988877 678 89999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.2e-39  Score=255.53  Aligned_cols=245  Identities=15%  Similarity=0.148  Sum_probs=203.3

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|+|+   ++++|+|+      .|+.+++|++.......      ...+.+|.++|.+++|+|++++|++++
T Consensus        57 H~~~v~~~~~sp~---g~~latg~------~dg~i~iwd~~~~~~~~------~~~~~~~~~~v~~v~~s~d~~~l~~~~  121 (311)
T d1nr0a1          57 HSHQTTVAKTSPS---GYYCASGD------VHGNVRIWDTTQTTHIL------KTTIPVFSGPVKDISWDSESKRIAAVG  121 (311)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSEEEEEESSSTTCCE------EEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEEEeCC---CCeEeccc------cCceEeeeeeecccccc------ccccccccCcccccccccccccccccc
Confidence            4678999999987   67888876      67888999987654322      334678999999999999999999987


Q ss_pred             c--CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCE-EEEeecCCeEEEEeCCCcceecccccCCccEEE
Q 022184           83 T--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (301)
Q Consensus        83 ~--d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~  159 (301)
                      .  +..+++|+++.++...       ....|...|.+++|+|++++ |++|+.|+.|++||+++++.......|..+|++
T Consensus       122 ~~~~~~~~v~~~~~~~~~~-------~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~  194 (311)
T d1nr0a1         122 EGRERFGHVFLFDTGTSNG-------NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS  194 (311)
T ss_dssp             CCSSCSEEEEETTTCCBCB-------CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEE
T ss_pred             ccccccccccccccccccc-------cccccccccccccccccceeeecccccccccccccccccccccccccccccccc
Confidence            6  4569999998776422       22346788999999998875 788999999999999999988888888899999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec------CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      +.|+|++++|++++.|+.+++||++++.....+...      |...|.+++|+|++++     +++++.|+.|++||+++
T Consensus       195 v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~-----l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-----IASASADKTIKIWNVAT  269 (311)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTT
T ss_pred             cccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCE-----EEEEeCCCeEEEEECCC
Confidence            999999999999999999999999999887776532      3457999999999997     78899999999999999


Q ss_pred             ceEeeeeeccCC-CcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          234 WNKIGHKRLLRK-PASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       234 ~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      ++++..+..+.. ....+.+.+++.+|++++.||.|++||++
T Consensus       270 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         270 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            998887766543 23344455566789999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-39  Score=263.36  Aligned_cols=243  Identities=15%  Similarity=0.175  Sum_probs=196.2

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      -.||+|++|+|+   +.++|+|+      .++.|++|+.+.....      ....+.+|.++|.+++|+|++++|++++.
T Consensus         7 ~~pIt~~~~s~d---g~~la~~~------~~~~i~iw~~~~~~~~------~~~~l~gH~~~V~~l~fsp~~~~l~s~s~   71 (371)
T d1k8kc_           7 VEPISCHAWNKD---RTQIAICP------NNHEVHIYEKSGNKWV------QVHELKEHNGQVTGVDWAPDSNRIVTCGT   71 (371)
T ss_dssp             SSCCCEEEECTT---SSEEEEEC------SSSEEEEEEEETTEEE------EEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEECCC---CCEEEEEe------CCCEEEEEECCCCCEE------EEEEecCCCCCEEEEEECCCCCEEEEEEC
Confidence            368999999988   67888865      5667899988654321      24557899999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee----cccccCCccEEE
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----LDEPKAHKSVLD  159 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~~i~~  159 (301)
                      |++|++||+.++......     ....|...|.+++|+|+++.|++++.|+.+++|++......    .....+...|.+
T Consensus        72 D~~i~vWd~~~~~~~~~~-----~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          72 DRNAYVWTLKGRTWKPTL-----VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  146 (371)
T ss_dssp             TSCEEEEEEETTEEEEEE-----ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             CCeEEEEeeccccccccc-----ccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccc
Confidence            999999999876542221     12246788999999999999999999999999998665432    223456678999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEeCCCCc------------------eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184          160 MDFSLDSEFLATTSTDGSARIWKTEDGV------------------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                      ++|+|++++|++++.|+.+++||+....                  .+.... .+...+.+++|+|+++.     +++++
T Consensus       147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~-----l~s~~  220 (371)
T d1k8kc_         147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSR-----VAWVS  220 (371)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSE-----EEEEE
T ss_pred             ccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeecc-CccCcEEEEEeeccccc-----ccccc
Confidence            9999999999999999999999986432                  233333 33456999999999997     68888


Q ss_pred             CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                      .|+.|++||+.+++.+..+..|..+|.+++|+|++++|++|. |+.+++|..
T Consensus       221 ~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEE
T ss_pred             cCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEe
Confidence            999999999999999988999999999999999998887665 676666543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-38  Score=255.21  Aligned_cols=248  Identities=18%  Similarity=0.173  Sum_probs=208.4

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ..++|+|++|+|+   +.++|+|+      .|+.+++|+.....        ....+..|...|.+++|+|+++++++++
T Consensus        54 H~~~I~~l~~s~~---~~~l~sgs------~Dg~v~iWd~~~~~--------~~~~~~~~~~~v~~v~~~~~~~~l~~~~  116 (340)
T d1tbga_          54 HLAKIYAMHWGTD---SRLLVSAS------QDGKLIIWDSYTTN--------KVHAIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTTEEEEEETTTTE--------EEEEEECSCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCEEEEEECCC---CCEEEEEE------CCCceeeeecccce--------eEEEEecccccEEeeEeeccceeeeeec
Confidence            5688999999987   67888866      67888999876432        1345678999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccc--------------------------------------cCCCCCCCCCeeEEEEeeCC
Q 022184           83 TNGGCKLFEVYGGATDINLLAK--------------------------------------KMPPLQDAGPQKCLSFSVDG  124 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~v~~~~~s~~~  124 (301)
                      .|+.+++|+.............                                      ......+...+....+.+.+
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             ccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccc
Confidence            9999999997654431110000                                      00011123457778888889


Q ss_pred             CEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-cCCCCeeEE
Q 022184          125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELC  203 (301)
Q Consensus       125 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~  203 (301)
                      .++++++.|+.|++||+++++.+..+..|...|++++|+|++++|++++.|+.|++||++.......+.. .+...+.++
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~  276 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV  276 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE
Confidence            9999999999999999999999888888999999999999999999999999999999999888776643 334469999


Q ss_pred             EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      +|+|++++     +++++.|+.|++||+.+++.+..+.+|..+|++++|+|++++|++|+.||.|+|||
T Consensus       277 ~~s~~~~~-----l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         277 SFSKSGRL-----LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECSSSCE-----EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EECCCCCE-----EEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999997     78899999999999999999999999999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-38  Score=251.85  Aligned_cols=240  Identities=16%  Similarity=0.245  Sum_probs=204.0

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|+|+   ++++++|+      .++.+++|++.......      ...+..|...+.+++|+|++.++++++
T Consensus        96 h~~~I~~v~~s~d---g~~l~s~~------~dg~i~iwd~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~~  160 (337)
T d1gxra_          96 RDNYIRSCKLLPD---GCTLIVGG------EASTLSIWDLAAPTPRI------KAELTSSAPACYALAISPDSKVCFSCC  160 (337)
T ss_dssp             TTSBEEEEEECTT---SSEEEEEE------SSSEEEEEECCCC--EE------EEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEEcCC---CCEEEEee------ccccccccccccccccc------ccccccccccccccccccccccccccc
Confidence            3568999999987   67788765      67888999987654333      345678999999999999999999999


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.|++|++.+++....       ...|...+.+++|++++..+++++.|+.+++||+++++.+... .+...|.+++|
T Consensus       161 ~d~~i~~~~~~~~~~~~~-------~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~  232 (337)
T d1gxra_         161 SDGNIAVWDLHNQTLVRQ-------FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGY  232 (337)
T ss_dssp             TTSCEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEE
T ss_pred             cccccccccccccccccc-------ccccccccccccccccccccccccccccccccccccceeeccc-ccccceEEEEE
Confidence            999999999987764222       2236688999999999999999999999999999998876544 56789999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  242 (301)
                      +|++++|++++.|+.+++||+++++.....  .+...|.+++|+|+++.     +++++.|+.|++||..+++.+... .
T Consensus       233 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~i~~v~~s~~g~~-----l~s~s~Dg~i~iwd~~~~~~~~~~-~  304 (337)
T d1gxra_         233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLH--LHESCVLSLKFAYCGKW-----FVSTGKDNLLNAWRTPYGASIFQS-K  304 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTSSCEEEEC--CCSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCEEEEE-E
T ss_pred             cccccccceecccccccccccccccccccc--ccccccceEEECCCCCE-----EEEEeCCCeEEEEECCCCCEEEEc-c
Confidence            999999999999999999999988765433  34557999999999997     688899999999999999887654 4


Q ss_pred             cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                      |...|.+++|+|++++|++|+.||.|+|||+
T Consensus       305 ~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            6789999999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-38  Score=256.12  Aligned_cols=272  Identities=15%  Similarity=0.187  Sum_probs=210.9

Q ss_pred             CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee----------CCceeccccccCCcceEEEE
Q 022184            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT----------SPLVTYVFDESEGDPMTIAV   71 (301)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~~~h~~~v~~~~~   71 (301)
                      +...+|+|++|+|+   ++++|+|       .|+.+++|++.........          ..........|...|.+++|
T Consensus        60 ~H~~~V~~l~fs~d---g~~lasg-------~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  129 (388)
T d1erja_          60 DHTSVVCCVKFSND---GEYLATG-------CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF  129 (388)
T ss_dssp             ECSSCCCEEEECTT---SSEEEEE-------CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE
T ss_pred             CCCCcEEEEEECCC---CCEEEEE-------eCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEE
Confidence            35688999999987   6788874       3567899988643321111          01112234568889999999


Q ss_pred             CCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc
Q 022184           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (301)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  151 (301)
                      +|++++|++++.||.|++|+...++....       ...|...|.++.|++++..+++++.++.+++||.++........
T Consensus       130 s~~~~~l~s~~~dg~v~i~~~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  202 (388)
T d1erja_         130 SPDGKFLATGAEDRLIRIWDIENRKIVMI-------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  202 (388)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCcceecccccccccccccccccccc-------cccccccccccccccccccccccccceeeeeeeccccccccccc
Confidence            99999999999999999999887765322       22367889999999999999999999999999999887766554


Q ss_pred             cCCccEEEEEec-CCCcEEEEEeCCCcEEEEeCCCCceEEEEee------cCCCCeeEEEEccCCCcceEEEEEEeCCcc
Q 022184          152 KAHKSVLDMDFS-LDSEFLATTSTDGSARIWKTEDGVAWTFLTR------NSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (301)
Q Consensus       152 ~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  224 (301)
                      .+ ....++.+. +++++|++++.|+.|++||.+++.....+..      .+...|.+++|+|+++.     +++++.|+
T Consensus       203 ~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-----l~s~~~d~  276 (388)
T d1erja_         203 IE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-----VVSGSLDR  276 (388)
T ss_dssp             CS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-----EEEEETTS
T ss_pred             cc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE-----EEEEECCC
Confidence            44 444455555 4889999999999999999999888776642      23457999999999997     78899999


Q ss_pred             eEEEEEccCceE------------eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEE
Q 022184          225 LLAVYDISTWNK------------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (301)
Q Consensus       225 ~i~~~d~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~  292 (301)
                      .|++||+++++.            ......|...|.+++|+|++++|++|+.||.|++||+++++++..+ .+| ...|.
T Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l-~~H-~~~V~  354 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGH-RNSVI  354 (388)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE-ECC-SSCEE
T ss_pred             cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-eCC-CCCEE
Confidence            999999976543            2344556788999999999999999999999999999999998877 678 89999


Q ss_pred             EEEEcc
Q 022184          293 LVEFCP  298 (301)
Q Consensus       293 ~~~~sp  298 (301)
                      ++++++
T Consensus       355 ~~~~~~  360 (388)
T d1erja_         355 SVAVAN  360 (388)
T ss_dssp             EEEECS
T ss_pred             EEEEec
Confidence            998643

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-37  Score=252.92  Aligned_cols=227  Identities=11%  Similarity=0.059  Sum_probs=189.0

Q ss_pred             CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      .++|+|++|+|+|++||+++.|+.|++|+.++++.....     ....|.++|.+++|+|++++|++++.|+.|++||+.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~-----~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-----ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE-----EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEE-----EecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            578999999999999999999999999999876532111     112478899999999999999999999999999998


Q ss_pred             Ccce--ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE---eecCCCCeeEEEEccCCCcceEEEE
Q 022184          143 SLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---TRNSDEKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       143 ~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~  217 (301)
                      +++.  ...+..+...|.+++|+|+++.|++++.|+.+++|++.........   ...+...|.+++|+|++++     +
T Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-----l  156 (371)
T d1k8kc_          82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL-----L  156 (371)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE-----E
T ss_pred             ccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccc-----e
Confidence            6653  3445567789999999999999999999999999998776543322   2334557999999999997     7


Q ss_pred             EEeCCcceEEEEEccCc------------------eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184          218 VQRGDKALLAVYDISTW------------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~  279 (301)
                      ++++.|+.|++||....                  +.+.....|...+.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus       157 ~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~  236 (371)
T d1k8kc_         157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  236 (371)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             eccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccce
Confidence            88999999999997642                  233445567788999999999999999999999999999999888


Q ss_pred             ccccccccCccEEEEEEccCCC
Q 022184          280 HWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       280 ~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..+ ..| ..+|.+++|+|||+
T Consensus       237 ~~~-~~~-~~~v~s~~fs~d~~  256 (371)
T d1k8kc_         237 ATL-ASE-TLPLLAVTFITESS  256 (371)
T ss_dssp             EEE-ECS-SCCEEEEEEEETTE
T ss_pred             eee-ecc-cccceeeeecCCCC
Confidence            776 567 88999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-36  Score=243.44  Aligned_cols=232  Identities=14%  Similarity=0.188  Sum_probs=196.3

Q ss_pred             eeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ...+|.||.+.|++++|+|++++|++|+.||+|++||+.+++....+       ..|..+|.+++|+|+++++++++.|+
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~-------~~~~~~v~~v~~~~~~~~l~~~~~d~  119 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-------PLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-------ECSCSCEEEEEECTTSSEEEEEETTC
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEE-------ecccccEEeeEeeccceeeeeecccc
Confidence            45678999999999999999999999999999999999887653322       13678899999999999999999999


Q ss_pred             eEEEEeCCCcceec---------------------------------------------ccccCCccEEEEEecCCCcEE
Q 022184          135 HLRIMHWPSLRIIL---------------------------------------------DEPKAHKSVLDMDFSLDSEFL  169 (301)
Q Consensus       135 ~i~v~d~~~~~~~~---------------------------------------------~~~~~~~~i~~~~~~~~~~~l  169 (301)
                      .+++|+........                                             ....+...+....+.+.+.++
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence            99999874332110                                             011123356778888889999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee--eccCCCc
Q 022184          170 ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--RLLRKPA  247 (301)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~v  247 (301)
                      ++++.|+.|++||+++++.+..+..+ ...|.+++|+|+++.     +++++.|+.|++||++..+.+..+  ..+...+
T Consensus       200 ~~~~~d~~v~i~d~~~~~~~~~~~~h-~~~i~~v~~~p~~~~-----l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i  273 (340)
T d1tbga_         200 VSGACDASAKLWDVREGMCRQTFTGH-ESDINAICFFPNGNA-----FATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             EEeecCceEEEEECCCCcEEEEEeCC-CCCeEEEEECCCCCE-----EEEEeCCCeEEEEeecccccccccccccccCce
Confidence            99999999999999999999988765 457999999999997     788899999999999988876544  3445679


Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          248 SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       248 ~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+++|+|++++|++|+.||.|++||+.+++.+..+ .+| ..+|++++|+|||+
T Consensus       274 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~H-~~~V~~l~~s~d~~  325 (340)
T d1tbga_         274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGH-DNRVSCLGVTDDGM  325 (340)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE-CCC-SSCEEEEEECTTSS
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE-cCC-CCCEEEEEEeCCCC
Confidence            99999999999999999999999999999998877 678 89999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-35  Score=236.90  Aligned_cols=260  Identities=14%  Similarity=0.093  Sum_probs=200.1

Q ss_pred             ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccccc-CCcceEEEECC--CCCeEEEE
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNP--SGDDFVCS   81 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~--~~~~l~~~   81 (301)
                      +.+++++|+|+   +..++++.+..       +.++.++......    .....+.+| ...|++++|+|  ++++|+++
T Consensus        18 ~~~t~l~~~~~---~~~la~~~~~~-------~~i~~~~~~~~~~----~~~~~~~gh~~~~v~~v~fsP~~~g~~lasg   83 (325)
T d1pgua1          18 NFTTHLSYDPT---TNAIAYPCGKS-------AFVRCLDDGDSKV----PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG   83 (325)
T ss_dssp             TCCCCCEEETT---TTEEEEEETTE-------EEEEECCSSCCSS----CSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred             CCeEEEEECCC---CCEEEEEeCCC-------EEEEEEeCCCCCc----cceEEEeCCCCCCEEEEEEeeCCCCCEEEEE
Confidence            45678999977   55666644221       2344454333211    112345666 56899999998  66799999


Q ss_pred             ecCCcEEEEEEcCCccccccccccC-CCCCCCCCeeEEEEeeCCCEEEEeec--CCeEEEEeCCCcceecccccCCccEE
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVL  158 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~i~  158 (301)
                      +.||+|++||+.............. ....+.++|.+++|+++++++++++.  ++.+++|++++++.+..+..|...|.
T Consensus        84 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  163 (325)
T d1pgua1          84 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN  163 (325)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred             eCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccc
Confidence            9999999999987654333221111 11235678999999999999887764  67899999999998888888999999


Q ss_pred             EEEecCCCcE-EEEEeCCCcEEEEeCCCCceEEEEeec--CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184          159 DMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       159 ~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  235 (301)
                      +++|+|++++ +++++.|+.+++||++..+.......+  +...|.+++|+|++...    +++++.|+.|++||+++++
T Consensus       164 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~----l~s~~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF----VITVGSDRKISCFDGKSGE  239 (325)
T ss_dssp             EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE----EEEEETTCCEEEEETTTCC
T ss_pred             cccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccccee----ccccccccceeeeeecccc
Confidence            9999998875 778999999999999988877766543  34569999999985431    6788999999999999999


Q ss_pred             EeeeeeccCCCcEEEEEc---CCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          236 KIGHKRLLRKPASVLSIS---LDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      .+..+..|..++..+.|+   |++++|++++.|+.|+|||+++++.+..+
T Consensus       240 ~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            998888888777666665   78999999999999999999999887765

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-34  Score=226.74  Aligned_cols=266  Identities=17%  Similarity=0.119  Sum_probs=200.7

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|+|+   +.++++|+      .|+.+++|+++.... .      .....+|...|.+++|+|++++ ++++
T Consensus        11 H~~~V~~l~~s~d---g~~l~s~s------~Dg~v~vWd~~~~~~-~------~~~~~~h~~~v~~v~~~~~g~~-~~~~   73 (299)
T d1nr0a2          11 HNKAITALSSSAD---GKTLFSAD------AEGHINSWDISTGIS-N------RVFPDVHATMITGIKTTSKGDL-FTVS   73 (299)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEETTTCCE-E------ECSSCSCSSCEEEEEECTTSCE-EEEE
T ss_pred             CCCCcEEEEECCC---CCEEEEEc------CCCeEEEEECCCCcE-E------EEEcCCCCCcEEEEEeecccee-eccc
Confidence            4688999999987   67888865      678889998754321 1      1123578999999999999874 5566


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+.+++|+.........    ......+...+.+++|+|+++++++++ ++.+++|+......   . .....+.+++|
T Consensus        74 ~d~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~---~-~~~~~~~~~~~  144 (299)
T d1nr0a2          74 WDDHLKVVPAGGSGVDSS----KAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTE---V-PISYNSSCVAL  144 (299)
T ss_dssp             TTTEEEEECSSSSSSCTT----SCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEE---E-ECSSCEEEEEE
T ss_pred             ceeeEEEeccCCcccccc----ccccccccccccccccccccccccccc-cccccccccccccc---c-ccccccccccc
Confidence            899999999875543111    111123456789999999998777665 67899998543222   1 22346788999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEee---e
Q 022184          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG---H  239 (301)
Q Consensus       163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~  239 (301)
                      +|++++|++++.|+.|++||+++++........+...|.+++|+|++++     +++++.++.|++||+.++....   .
T Consensus       145 s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         145 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF-----LVATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             CTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE-----EEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence            9999999999999999999998887665444445667999999999997     6888999999999998876543   3


Q ss_pred             eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecc-ccccccCccEEEEEEccC
Q 022184          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW-SKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~~~v~~~~~spd  299 (301)
                      +..|...|++++|+|++++|++|+.||.|++||++++..... ....|....+..+.|.++
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  280 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE  280 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET
T ss_pred             ccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCC
Confidence            456778999999999999999999999999999987653322 223332567888777554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-34  Score=236.86  Aligned_cols=241  Identities=15%  Similarity=0.208  Sum_probs=193.2

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ...|++++|+|+   ++++++|+      .++.+++|+......        ...+.+|...|.++.|++++..+++++.
T Consensus       121 ~~~V~~l~~s~~---~~~l~s~~------~dg~v~i~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~~~~~~~  183 (388)
T d1erja_         121 DLYIRSVCFSPD---GKFLATGA------EDRLIRIWDIENRKI--------VMILQGHEQDIYSLDYFPSGDKLVSGSG  183 (388)
T ss_dssp             CCBEEEEEECTT---SSEEEEEE------TTSCEEEEETTTTEE--------EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEEEEECCC---CCcceecc------ccccccccccccccc--------cccccccccccccccccccccccccccc
Confidence            456999999987   67888866      677789998764332        3346789999999999999999999999


Q ss_pred             CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceeccc-------ccCCc
Q 022184           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE-------PKAHK  155 (301)
Q Consensus        84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------~~~~~  155 (301)
                      ++.+++||..+.......        .+.....++.+++ ++++|++++.|+.|++||..++.....+       ..|..
T Consensus       184 ~~~i~~~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~  255 (388)
T d1erja_         184 DRTVRIWDLRTGQCSLTL--------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD  255 (388)
T ss_dssp             TSEEEEEETTTTEEEEEE--------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred             ceeeeeeecccccccccc--------ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCC
Confidence            999999999876542221        2334455666666 8899999999999999999887765443       34567


Q ss_pred             cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE-----------EeecCCCCeeEEEEccCCCcceEEEEEEeCCcc
Q 022184          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF-----------LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  224 (301)
                      .|.+++|+|++++|++++.|+.|++||++++.....           ....+...+.+++|+|++++     +++++.|+
T Consensus       256 ~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~sg~~dg  330 (388)
T d1erja_         256 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-----ILSGSKDR  330 (388)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE-----EEEEETTS
T ss_pred             CEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCE-----EEEEeCCC
Confidence            899999999999999999999999999986543221           12234557999999999997     78899999


Q ss_pred             eEEEEEccCceEeeeeeccCCCcEEEEE------cCCCCEEEEeeCCCcEEEEeCC
Q 022184          225 LLAVYDISTWNKIGHKRLLRKPASVLSI------SLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      .|++||+++++++..+.+|...|.++++      +|++++|++|+.||+|+||+++
T Consensus       331 ~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999999999999999999999875      6789999999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-34  Score=227.39  Aligned_cols=231  Identities=16%  Similarity=0.225  Sum_probs=206.9

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      ...|.||.++|++++|+|++++|++|+.|++|++||+++++....+       ..|...|.+++|+|++.+++++..++.
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-------~~h~~~V~~~~~~~~~~~~~~~~~~~~   82 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-------KGHTDSVQDISFDHSGKLLASCSADMT   82 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-------CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-------eCCCCcEEEEeeecccccccccccccc
Confidence            4568999999999999999999999999999999999887653322       236789999999999999999999999


Q ss_pred             EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      +.+|+....+.......+...+.++.|+|+++.+++++.|+.+++||+++++....+..+. ..+.+++|+|++..    
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----  157 (317)
T d1vyhc1          83 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR-EWVRMVRPNQDGTL----  157 (317)
T ss_dssp             CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTTSSE----
T ss_pred             cccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC-CcceeeecccCCCE----
Confidence            9999998888877788888899999999999999999999999999999999988887654 46999999999997    


Q ss_pred             EEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCC--------------------CEEEEeeCCCcEEEEeCCC
Q 022184          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG--------------------KYLAMGSKDGDICVVDVKK  275 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~--------------------~~l~~~~~d~~i~i~~~~~  275 (301)
                       +++++.|+.|++|+..+++....+..+...+..++|+|++                    .++++++.|+.|++|++++
T Consensus       158 -l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  236 (317)
T d1vyhc1         158 -IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  236 (317)
T ss_dssp             -EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             -EEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC
Confidence             7888999999999999999888888888999999998764                    4689999999999999999


Q ss_pred             ceeeccccccccCccEEEEEEccCCC
Q 022184          276 MEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       276 ~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++.+..+ .+| ...|.+++|+|+|+
T Consensus       237 ~~~~~~~-~~~-~~~v~~~~~~~~~~  260 (317)
T d1vyhc1         237 GMCLMTL-VGH-DNWVRGVLFHSGGK  260 (317)
T ss_dssp             TEEEEEE-ECC-SSCEEEEEECSSSS
T ss_pred             CcEEEEE-eCC-CCCEEEEEECCCCC
Confidence            9988877 578 89999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=225.31  Aligned_cols=250  Identities=15%  Similarity=0.166  Sum_probs=190.4

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      +.+|++++|+|+.. +.+++.|+      .|+.++||++................+..|.++|.+++|++++++|++++.
T Consensus        63 ~~~v~~v~fsP~~~-g~~lasgs------~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  135 (325)
T d1pgua1          63 SSVVTTVKFSPIKG-SQYLCSGD------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE  135 (325)
T ss_dssp             TSCEEEEEECSSTT-CCEEEEEE------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             CCCEEEEEEeeCCC-CCEEEEEe------CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec
Confidence            46899999997532 46787765      778889999865432221122223345678999999999999999987764


Q ss_pred             --CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCE-EEEeecCCeEEEEeCCCcceeccc---ccCCccE
Q 022184           84 --NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDE---PKAHKSV  157 (301)
Q Consensus        84 --d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~i  157 (301)
                        ++.+++|+.++++....       ...|...|.+++|+|++.. +++++.|+.+++||+++.+.....   ..+...|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v  208 (325)
T d1pgua1         136 GRDNFGVFISWDSGNSLGE-------VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV  208 (325)
T ss_dssp             CSSCSEEEEETTTCCEEEE-------CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCE
T ss_pred             cccceEEEEeeccccccee-------eeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCcc
Confidence              67899999887654222       1247789999999998765 678999999999999877654443   3455689


Q ss_pred             EEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEc---cCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          158 LDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS---KDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       158 ~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      .+++|+|+ +.+|++++.|+.|++||+++++.+..+..+.. ++..+.|+   |++++     +++++.|+.|++||+++
T Consensus       209 ~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~-----l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQK-----FATVGADATIRVWDVTT  282 (325)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB-CCCSCEEEEEESSSSE-----EEEEETTSEEEEEETTT
T ss_pred             EEeeeccccceeccccccccceeeeeecccccccccccccc-ccccceeeeeccCCCE-----EEEEeCCCeEEEEECCC
Confidence            99999996 67899999999999999999999988876543 45555554   67776     68889999999999999


Q ss_pred             ceEeeeeeccCCC--cEEEEEcCC-CCEEEEeeCCCcEEEEeC
Q 022184          234 WNKIGHKRLLRKP--ASVLSISLD-GKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       234 ~~~~~~~~~~~~~--v~~~~~s~~-~~~l~~~~~d~~i~i~~~  273 (301)
                      ++.+..+..+...  +..+++.+. +.+|++++.||.|++||+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         283 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9988877766654  334444432 347899999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-33  Score=231.77  Aligned_cols=277  Identities=14%  Similarity=0.123  Sum_probs=195.7

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEE------EECC-CC
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTI------AVNP-SG   75 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~------~~~~-~~   75 (301)
                      ..++|++++++++     ++++++      .|+.+++|+...........  .......|...+..+      ..+. ++
T Consensus        13 H~~~I~~v~~~~~-----~l~S~S------~D~~iriWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (393)
T d1sq9a_          13 HDADIFSVSACNS-----FTVSCS------GDGYLKVWDNKLLDNENPKD--KSYSHFVHKSGLHHVDVLQAIERDAFEL   79 (393)
T ss_dssp             SSSCEEEEEECSS-----EEEEEE------TTSEEEEEESBCCTTCCGGG--GEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             ccCccEEEEEeCC-----EEEEEE------CCCeEEEEECCCCCCCcccc--eeEeeeeccCCceEeeeEeeeccCCCCC
Confidence            3578999998743     777755      57888999876543222111  111122333333222      2222 23


Q ss_pred             CeEEEEecCCcEEEEEEcCCcccccccccc---CCCCCCCCCeeEEEEeeC-----CCEEEEeecCCeEEEEeCCCcce-
Q 022184           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKK---MPPLQDAGPQKCLSFSVD-----GSRFAAGGVDGHLRIMHWPSLRI-  146 (301)
Q Consensus        76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~v~d~~~~~~-  146 (301)
                      ..+++++.||.|++|++.............   .....+...+..++|.++     +.++++++.||.+++|++..... 
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            467789999999999997665433322211   112223456778888775     46789999999999999843211 


Q ss_pred             -----------------ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-----cCCCCeeEEE
Q 022184          147 -----------------ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-----NSDEKIELCR  204 (301)
Q Consensus       147 -----------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~  204 (301)
                                       ......+...+.+++|+|++ +|++|+.|++|++||+++++++..+..     .|..+|.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             cceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence                             11112233468899999997 899999999999999999988876653     2456799999


Q ss_pred             EccCCCcceEEEEEEeCCcc---eEEEEEccCceEeeee-------------eccCCCcEEEEEcCCCCEEEEeeCCCcE
Q 022184          205 FSKDGTKPFLFCTVQRGDKA---LLAVYDISTWNKIGHK-------------RLLRKPASVLSISLDGKYLAMGSKDGDI  268 (301)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i  268 (301)
                      |+|+++.     +++++.|+   .|++||+++++.+..+             .+|...|++++|+|++++|++++.|++|
T Consensus       239 ~spdg~~-----l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         239 FSPQGSL-----LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  313 (393)
T ss_dssp             ECSSTTE-----EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             cccccce-----eeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEE
Confidence            9999997     67777665   6999999988776554             3688899999999999999999999999


Q ss_pred             EEEeCCCceeeccccccccCccEE----EEEEccCC
Q 022184          269 CVVDVKKMEINHWSKRLHLGTSIA----LVEFCPTQ  300 (301)
Q Consensus       269 ~i~~~~~~~~~~~~~~~~~~~~v~----~~~~spdg  300 (301)
                      ++||+++++++..+ .+| ...|.    .++|+|+|
T Consensus       314 ~vWd~~~g~~~~~l-~gH-~~~v~~~~~~~~~~~~~  347 (393)
T d1sq9a_         314 RFWDVKTKERITTL-NMH-CDDIEIEEDILAVDEHG  347 (393)
T ss_dssp             EEEETTTTEEEEEE-ECC-GGGCSSGGGCCCBCTTS
T ss_pred             EEEECCCCCEEEEE-CCc-CCcccCCccEEEECCCC
Confidence            99999999998887 567 55554    35566655

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.6e-32  Score=214.16  Aligned_cols=227  Identities=13%  Similarity=0.125  Sum_probs=179.3

Q ss_pred             eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (301)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (301)
                      ...+.||.++|++++|+|++++|++|+.||+|++||+++++....+      ...|...|.+++|+|++++ ++++.|+.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~------~~~h~~~v~~v~~~~~g~~-~~~~~d~~   77 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF------PDVHATMITGIKTTSKGDL-FTVSWDDH   77 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS------SCSCSSCEEEEEECTTSCE-EEEETTTE
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE------cCCCCCcEEEEEeecccee-ecccceee
Confidence            4568999999999999999999999999999999999877652221      1246788999999999874 55667999


Q ss_pred             EEEEeCCCccee---cccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc
Q 022184          136 LRIMHWPSLRII---LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (301)
Q Consensus       136 i~v~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (301)
                      +++|+.......   .....+...+.+++|+|+++.+++++ ++.+++|+...  .. ...  ....+.+++|+|+++. 
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~-~~~--~~~~~~~~~~s~~~~~-  150 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LT-EVP--ISYNSSCVALSNDKQF-  150 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EE-EEE--CSSCEEEEEECTTSCE-
T ss_pred             EEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--cc-ccc--cccccccccccccccc-
Confidence            999998654321   11223456789999999998777665 57899998542  22 222  2335889999999997 


Q ss_pred             eEEEEEEeCCcceEEEEEccCceEee-eeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc--cccccCc
Q 022184          213 FLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS--KRLHLGT  289 (301)
Q Consensus       213 ~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~~  289 (301)
                          +++++.|+.|++||+++++... ....|...|.+++|+|++++|++++.|+.|++||+.++......  ...| ..
T Consensus       151 ----l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h-~~  225 (299)
T d1nr0a2         151 ----VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TA  225 (299)
T ss_dssp             ----EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SS
T ss_pred             ----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence                6888999999999998876543 34567889999999999999999999999999999887655433  2457 88


Q ss_pred             cEEEEEEccCCC
Q 022184          290 SIALVEFCPTQR  301 (301)
Q Consensus       290 ~v~~~~~spdg~  301 (301)
                      +|++++|+|+|+
T Consensus       226 ~v~~l~~s~~~~  237 (299)
T d1nr0a2         226 KVACVSWSPDNV  237 (299)
T ss_dssp             CEEEEEECTTSS
T ss_pred             cccccccccccc
Confidence            999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-32  Score=219.19  Aligned_cols=261  Identities=14%  Similarity=0.222  Sum_probs=199.4

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      ++|++|.     ++++|+|+      .|+.|++|++....        ....+.+|.++|.+++|+|+ .+|++++.|++
T Consensus        16 itc~~~~-----~~~l~tgs------~Dg~i~vWd~~~~~--------~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~   75 (355)
T d1nexb2          16 ITCLQFE-----DNYVITGA------DDKMIRVYDSINKK--------FLLQLSGHDGGVWALKYAHG-GILVSGSTDRT   75 (355)
T ss_dssp             EEEEEEE-----TTEEEEEE------TTTEEEEEETTTTE--------EEEEEECCSSCEEEEEEETT-TEEEEEETTCC
T ss_pred             EEEEEEC-----CCEEEEEe------CCCeEEEEECCCCc--------EEEEEECCCCCEEEEEEcCC-CEEEEEecccc
Confidence            5777765     35888876      67888999875432        24467899999999999985 58999999999


Q ss_pred             EEEEEEcCCcccccccccc------------------------------CCC------CC-------------CC-----
Q 022184           87 CKLFEVYGGATDINLLAKK------------------------------MPP------LQ-------------DA-----  112 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~------------------------------~~~------~~-------------~~-----  112 (301)
                      |++|+..............                              ...      ..             ..     
T Consensus        76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d1nexb2          76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  155 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred             cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence            9999987654310000000                              000      00             00     


Q ss_pred             ----CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 022184          113 ----GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (301)
Q Consensus       113 ----~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  188 (301)
                          .......+.+++++++++..|+.|++||+++++.+.....+...+.++.|+|+++++++++.|+.|++||++++..
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  235 (355)
T d1nexb2         156 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL  235 (355)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE
T ss_pred             eeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccc
Confidence                0111234566788999999999999999999988887777888999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEE-EEcCCCCEEEEeeCCCc
Q 022184          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL-SISLDGKYLAMGSKDGD  267 (301)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~d~~  267 (301)
                      +..+..|. ..|.+++|++  ++     +++++.|+.|++||+++....  +..|...+..+ .++++++++++| .|+.
T Consensus       236 ~~~~~~h~-~~v~~~~~~~--~~-----l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~  304 (355)
T d1nexb2         236 MYTLQGHT-ALVGLLRLSD--KF-----LVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQ  304 (355)
T ss_dssp             EEEECCCS-SCCCEEEECS--SE-----EEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTE
T ss_pred             cccccccc-cccccccccc--ce-----eeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCE
Confidence            98887654 5699999875  34     688999999999999987654  44455555554 467777777666 5899


Q ss_pred             EEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       268 i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      |++||+++++++......| ..+|.+++|+|+
T Consensus       305 i~vwd~~tg~~~~~~~~~~-~~~V~~v~~~~~  335 (355)
T d1nexb2         305 FNIYNLRSGKLVHANILKD-ADQIWSVNFKGK  335 (355)
T ss_dssp             EEEEETTTCCBCCSCTTTT-CSEEEEEEEETT
T ss_pred             EEEEECCCCCEEEEEecCC-CCCEEEEEEcCC
Confidence            9999999999887655678 899999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-30  Score=205.63  Aligned_cols=264  Identities=16%  Similarity=0.172  Sum_probs=192.7

Q ss_pred             CceeE-EEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            4 GGTVT-CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         4 ~~~v~-~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ..+|. |++|  +   ++++|+|+      .|+.+++|++....        ....+.+|.+.|.+++|+|+  +|++++
T Consensus        16 ~~~V~s~~~~--~---g~~l~sgs------~Dg~i~vWd~~~~~--------~~~~~~~h~~~V~~v~~~~~--~l~s~s   74 (342)
T d2ovrb2          16 DDHVITCLQF--C---GNRIVSGS------DDNTLKVWSAVTGK--------CLRTLVGHTGGVWSSQMRDN--IIISGS   74 (342)
T ss_dssp             TTSCEEEEEE--E---TTEEEEEE------TTSCEEEEETTTCC--------EEEECCCCSSCEEEEEEETT--EEEEEE
T ss_pred             CCceEEEEEE--C---CCEEEEEe------CCCeEEEEECCCCC--------EEEEEeCCCCCEEEEEeCCC--ccccce
Confidence            45564 5455  4   45888865      67888999875432        23457899999999999874  899999


Q ss_pred             cCCcEEEEEEcCCcccccccccc--------------------------CCCC-----CCCCCeeEEEEeeCCCEEEEee
Q 022184           83 TNGGCKLFEVYGGATDINLLAKK--------------------------MPPL-----QDAGPQKCLSFSVDGSRFAAGG  131 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~--------------------------~~~~-----~~~~~v~~~~~s~~~~~l~~~~  131 (301)
                      .|+.+++|+..............                          ....     ..........+.+....+++++
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA  154 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence            99999999987654311111000                          0000     0001112233445667788999


Q ss_pred             cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       132 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      .|+.+++||....+.+..+..|...+..+  .+++.++++++.|+.|++||++.++.+..+..+. ..+.++++++  ++
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~--~~  229 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELKD--NI  229 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCCC-SCEEEEEEET--TE
T ss_pred             CCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEecccc-cceeEEecCC--CE
Confidence            99999999999888877777776665554  4568899999999999999999999988887654 4577777765  44


Q ss_pred             ceEEEEEEeCCcceEEEEEccCceEeeeeecc---CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc----c
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----R  284 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----~  284 (301)
                           +++++.|+.|++||+...+....+..+   ...+.++.+  +++++++|+.||.|++||+++++.++.+.    .
T Consensus       230 -----l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~  302 (342)
T d2ovrb2         230 -----LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG  302 (342)
T ss_dssp             -----EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTG
T ss_pred             -----EEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCC
Confidence                 688999999999999988776666543   344555555  56799999999999999999998876553    3


Q ss_pred             cccCccEEEEEEccCCC
Q 022184          285 LHLGTSIALVEFCPTQR  301 (301)
Q Consensus       285 ~~~~~~v~~~~~spdg~  301 (301)
                      +| ...|++++|+|+|+
T Consensus       303 ~~-~~~v~~v~~s~~~~  318 (342)
T d2ovrb2         303 GS-GGVVWRIRASNTKL  318 (342)
T ss_dssp             GG-TCEEEEEEECSSEE
T ss_pred             CC-CCCEEEEEECCCCC
Confidence            46 77899999999863

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-30  Score=207.77  Aligned_cols=272  Identities=11%  Similarity=0.028  Sum_probs=193.2

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC-CeEEEE
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCS   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~   81 (301)
                      +...|++++|+|+   +++||+|+      .|++++||+++.......     .....+|..+|.+++|+|++ .+|++|
T Consensus        10 h~d~I~~l~fsp~---~~~L~s~s------~Dg~v~iwd~~~~~~~~~-----~~~~~~h~~~V~~v~f~~~~~~~l~sg   75 (342)
T d1yfqa_          10 PKDYISDIKIIPS---KSLLLITS------WDGSLTVYKFDIQAKNVD-----LLQSLRYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             CSSCEEEEEEEGG---GTEEEEEE------TTSEEEEEEEETTTTEEE-----EEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred             CCCCEEEEEEeCC---CCEEEEEE------CCCeEEEEEccCCCcceE-----EEEecCCCCCEEEEEEeCCCCCEEEEc
Confidence            3566999999988   67888865      688899999976543221     12234699999999999864 578999


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc----ccC--Cc
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE----PKA--HK  155 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~----~~~--~~  155 (301)
                      +.|+.|++|++..........      ..+........+.++...+++++.++.+++||++++......    ..+  ..
T Consensus        76 ~~d~~v~~w~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T d1yfqa_          76 TVQGEILKVDLIGSPSFQALT------NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             ETTSCEEEECSSSSSSEEECB------SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             ccccceeeeeccccccccccc------ccccccccccccccccccccccccccccceeeccccccceeeecccccccccc
Confidence            999999999998765532221      112334455667778889999999999999998655432221    111  12


Q ss_pred             cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      ....+.+.+++..+++++.|+.|++||++..+......  ........+..+.+.....    +++++.|+.+.+|+...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         150 KNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG----YACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             CCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE----EEEEETTSEEEEEECCT
T ss_pred             eeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCE----EEeecCCCeEEEEEecC
Confidence            34566778888999999999999999998765433222  2223345566665544331    67788899999999764


Q ss_pred             ceEe---------------eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          234 WNKI---------------GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       234 ~~~~---------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      ....               .....+...+++++|+|++++|++|+.||.|++||+++++.+..+...|   .+..++|+|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~---~~~~~~~s~  302 (342)
T d1yfqa_         226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSVVKIAC  302 (342)
T ss_dssp             TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS---SSEEEEEEE
T ss_pred             CcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC---CCEEEEEEe
Confidence            3221               1112344578999999999999999999999999999999888764444   344566777


Q ss_pred             CCC
Q 022184          299 TQR  301 (301)
Q Consensus       299 dg~  301 (301)
                      +|+
T Consensus       303 ~~~  305 (342)
T d1yfqa_         303 SDN  305 (342)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            663

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.8e-30  Score=203.16  Aligned_cols=248  Identities=14%  Similarity=0.084  Sum_probs=192.5

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ...+|+|++|+|       +++|+      .|+.+++|+...             ...+|...|.++++++++ .+++++
T Consensus        12 H~~~I~~l~~s~-------l~sgs------~Dg~v~~Wd~~~-------------~~~~h~~~V~~~~~~~~~-~~~s~s   64 (287)
T d1pgua2          12 HNKGITALTVNP-------LISGS------YDGRIMEWSSSS-------------MHQDHSNLIVSLDNSKAQ-EYSSIS   64 (287)
T ss_dssp             CSSCEEEEETTT-------TEEEE------TTSCEEETTTTE-------------EECCCCSCEEEEECCSTT-CCEEEE
T ss_pred             CCCceEEEEECc-------EEEEe------CCCeEEEEECCC-------------CCCCCCCCEEEEEecCCC-eEEEEe
Confidence            468999999973       45544      778889987532             135789999999998754 678899


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  162 (301)
                      .|+++++|++...+.              ...+..+.+++++..++++. ++.+.+|+..+++.+..+.. ...+  .++
T Consensus        65 ~D~~v~~w~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~--~~~  126 (287)
T d1pgua2          65 WDDTLKVNGITKHEF--------------GSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRL-NSPG--SAV  126 (287)
T ss_dssp             TTTEEEETTEEEEEC--------------SSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEEC-SSCE--EEE
T ss_pred             ecccccccccccccc--------------ccceeeeeeccCCceEEEee-cccceeeeccceeeeeeccc-ccee--eee
Confidence            999999999875432              23467788888887666655 66788999888877665533 2333  456


Q ss_pred             cCCCcEEEEEeCCC-cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEee-ee
Q 022184          163 SLDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG-HK  240 (301)
Q Consensus       163 ~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~  240 (301)
                      +|+++.+++++.++ .+++|++...+....+...+...+.+++|+|++.+     +++++.|+.|++||+.+++... ..
T Consensus       127 ~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~g~~dg~i~i~d~~~~~~~~~~~  201 (287)
T d1pgua2         127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY-----IAAGDVMGKILLYDLQSREVKTSRW  201 (287)
T ss_dssp             EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEECCS
T ss_pred             eccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccc-----cccccccccccceeecccccccccc
Confidence            77788888877665 79999998777666666666678999999999997     7889999999999999887654 45


Q ss_pred             eccCCCcEEEEEcCC----------CCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          241 RLLRKPASVLSISLD----------GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       241 ~~~~~~v~~~~~s~~----------~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ..|...|.+++|+|+          +.+|++|+.|+.|++||+++.........+| ...|++++|+|+++
T Consensus       202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h-~~~V~~v~~~~~~~  271 (287)
T d1pgua2         202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPST  271 (287)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEETTE
T ss_pred             cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC-CCCeEEEEECCCCE
Confidence            678889999999875          4689999999999999998744333333689 89999999999873

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-29  Score=193.99  Aligned_cols=235  Identities=12%  Similarity=0.207  Sum_probs=178.4

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ....|+|++|.     ++++|+|+      .|+.|++|+++...        ....+.+|.+.|.+++|  ++++|++++
T Consensus        14 ~~~~V~c~~~d-----~~~l~sgs------~Dg~i~vWd~~~~~--------~~~~l~~H~~~V~~v~~--~~~~l~s~s   72 (293)
T d1p22a2          14 TSKGVYCLQYD-----DQKIVSGL------RDNTIKIWDKNTLE--------CKRILTGHTGSVLCLQY--DERVIITGS   72 (293)
T ss_dssp             SCCCEEEEECC-----SSEEEEEE------SSSCEEEEESSSCC--------EEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred             CCCCEEEEEEc-----CCEEEEEe------CCCeEEEEECCCCc--------EEEEEecCCCCEeeeec--ccceeeccc
Confidence            35678998774     45888876      77888999875432        24567899999999987  578999999


Q ss_pred             cCCcEEEEEEcCCccccccccc------------------------------------cCCCCCCCCCeeEEEEeeCCCE
Q 022184           83 TNGGCKLFEVYGGATDINLLAK------------------------------------KMPPLQDAGPQKCLSFSVDGSR  126 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~v~~~~~s~~~~~  126 (301)
                      .|+.|++|++..+.........                                    ......+...+..+.+  ....
T Consensus        73 ~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~  150 (293)
T d1p22a2          73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKY  150 (293)
T ss_dssp             TTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTE
T ss_pred             ccccccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee--cccc
Confidence            9999999998766541110000                                    0001123344444444  4567


Q ss_pred             EEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEc
Q 022184          127 FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS  206 (301)
Q Consensus       127 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  206 (301)
                      +++++.|+.+++||+++++.+..+..+...+..+.++  +.++++++.|+.|++||+++.+.+.....+.. .+.  .++
T Consensus       151 ~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~--~~~  225 (293)
T d1p22a2         151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVR--CIR  225 (293)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEE--EEE
T ss_pred             cccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce-eee--ecc
Confidence            8899999999999999999888888887888887776  56899999999999999999998887765443 354  456


Q ss_pred             cCCCcceEEEEEEeCCcceEEEEEccCc---------eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          207 KDGTKPFLFCTVQRGDKALLAVYDISTW---------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                      +++..     +++++.|+.|++||+...         ..+..+..|...|++++|+  +++|++++.||+|++||
T Consensus       226 ~~~~~-----l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         226 FDNKR-----IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCSSE-----EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ccceE-----EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            67765     688999999999997642         3456678899999999984  56899999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.1e-29  Score=203.16  Aligned_cols=225  Identities=18%  Similarity=0.205  Sum_probs=168.8

Q ss_pred             CcCceeEeeeCCCcce--eeeCCceeccccccCCcceEEEECCC-----CCeEEEEecCCcEEEEEEcCCccccc-----
Q 022184           33 SPSVLEIFSFDPKTTS--VYTSPLVTYVFDESEGDPMTIAVNPS-----GDDFVCSTTNGGCKLFEVYGGATDIN-----  100 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~~~~~d~~i~~w~~~~~~~~~~-----  100 (301)
                      .++.+++|.+......  .............+...+..++|.++     +.++++++.|+++++|++........     
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            6788899987543321  11111111222345667788888775     45889999999999999965432111     


Q ss_pred             ------cccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecc------cccCCccEEEEEecCCCcE
Q 022184          101 ------LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD------EPKAHKSVLDMDFSLDSEF  168 (301)
Q Consensus       101 ------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~------~~~~~~~i~~~~~~~~~~~  168 (301)
                            ..........+...+.+++|+|++ +|++|+.|+.|++||+.+++.+..      +..|..+|.+++|+|++++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  245 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  245 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce
Confidence                  111112223345678999999987 899999999999999998876543      3457789999999999999


Q ss_pred             EEEEeCCCc---EEEEeCCCCceEEEEee------------cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          169 LATTSTDGS---ARIWKTEDGVAWTFLTR------------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       169 l~~~~~d~~---i~i~d~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      |++++.|++   |++||+++++.+..+..            .|...|++++|+|++++     +++++.|++|++||+++
T Consensus       246 l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~-----l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-----LCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-----EEEEETTSEEEEEETTT
T ss_pred             eeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCe-----eEEECCCCEEEEEECCC
Confidence            999999874   99999999988887742            24557999999999997     79999999999999999


Q ss_pred             ceEeeeeeccCCCcE----EEEEcCCCCEEEEee
Q 022184          234 WNKIGHKRLLRKPAS----VLSISLDGKYLAMGS  263 (301)
Q Consensus       234 ~~~~~~~~~~~~~v~----~~~~s~~~~~l~~~~  263 (301)
                      ++++..+.+|...|.    .++|+|++..+++++
T Consensus       321 g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         321 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            999999999987665    478889888777654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=3.7e-29  Score=201.51  Aligned_cols=236  Identities=14%  Similarity=0.088  Sum_probs=174.7

Q ss_pred             EEEeeee-cCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC-
Q 022184            8 TCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-   85 (301)
Q Consensus         8 ~~~~w~~-~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-   85 (301)
                      +...|+| |   ++++|++.       .+  ++|.|+..+....       .+ +|...|.+++|+|||++|++++.+. 
T Consensus         6 ~~~~fSP~d---G~~~a~~~-------~g--~v~v~d~~~~~~~-------~~-~~~~~v~~~~~spDg~~l~~~~~~~g   65 (360)
T d1k32a3           6 FAEDFSPLD---GDLIAFVS-------RG--QAFIQDVSGTYVL-------KV-PEPLRIRYVRRGGDTKVAFIHGTREG   65 (360)
T ss_dssp             GEEEEEECG---GGCEEEEE-------TT--EEEEECTTSSBEE-------EC-SCCSCEEEEEECSSSEEEEEEEETTE
T ss_pred             hcccccCCC---CCEEEEEE-------CC--eEEEEECCCCcEE-------Ec-cCCCCEEEEEECCCCCEEEEEEcCCC
Confidence            4578998 6   67777743       23  3444555544332       12 6889999999999999998876653 


Q ss_pred             -cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecC
Q 022184           86 -GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (301)
Q Consensus        86 -~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~  164 (301)
                       .|++||.++++.        .....|...+.+++|+|++++|++++.++.+++|++.+++....+..+...+.+++|+|
T Consensus        66 ~~v~v~d~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  137 (360)
T d1k32a3          66 DFLGIYDYRTGKA--------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD  137 (360)
T ss_dssp             EEEEEEETTTCCE--------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred             CEEEEEECCCCcE--------EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhcc
Confidence             799999987764        22335778999999999999999999999999999999988777777778899999999


Q ss_pred             CCcEEEEEe----------CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc-----------
Q 022184          165 DSEFLATTS----------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----------  223 (301)
Q Consensus       165 ~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------  223 (301)
                      ||++|+.+.          .++.+++||+.+++......  +...+..++|+|+|+.     ++.++.+           
T Consensus       138 dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~-----l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         138 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT--ENSHDYAPAFDADSKN-----LYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC--SSSBEEEEEECTTSCE-----EEEEESCCCCCEECSSSS
T ss_pred             ceeeeeeeccccccceeeccccceeeeccccCceeeecc--cccccccccccCCCCE-----EEEEeCCCceEccccccc
Confidence            999998654          34468999998876544332  2334677778888776     2333333           


Q ss_pred             --------------------------------------------------------------------------------
Q 022184          224 --------------------------------------------------------------------------------  223 (301)
Q Consensus       224 --------------------------------------------------------------------------------  223 (301)
                                                                                                      
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (360)
T d1k32a3         211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY  290 (360)
T ss_dssp             CEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHH
T ss_pred             ceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeE
Confidence                                                                                            


Q ss_pred             -------ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          224 -------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       224 -------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                             +.|++||+.+++..    .+...+..++|||||++|++++.||.|++||+++++....+
T Consensus       291 ~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         291 YQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             HHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred             EEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence                   34444444443221    12235788999999999999999999999999998776655

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-28  Score=197.86  Aligned_cols=227  Identities=12%  Similarity=0.094  Sum_probs=176.4

Q ss_pred             eccccccCCcc-eEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184           56 TYVFDESEGDP-MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (301)
Q Consensus        56 ~~~~~~h~~~v-~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (301)
                      ..+|+||.+.| +|++|  ++++|++|+.|++|++||+.+++....+       ..|.++|.+++|+|+ .+|++++.|+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l-------~~H~~~V~~l~~s~~-~~l~s~s~D~   74 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-------SGHDGGVWALKYAHG-GILVSGSTDR   74 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEE-------ECCSSCEEEEEEETT-TEEEEEETTC
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEE-------ECCCCCEEEEEEcCC-CEEEEEeccc
Confidence            34688999886 55555  6889999999999999999887653322       247889999999985 5899999999


Q ss_pred             eEEEEeCCCcceecccccCC--ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC---------------
Q 022184          135 HLRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD---------------  197 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------------  197 (301)
                      .|++|++...+.........  .......+.+++.++++++.|+.|++||+++............               
T Consensus        75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            99999998877655444333  3456677888999999999999999999987655433221110               


Q ss_pred             -----CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184          198 -----EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (301)
Q Consensus       198 -----~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~  272 (301)
                           .......+.++++.     ++.+..|+.|++||+++++.+.....+...+.++.|+|+++++++++.|+.|++||
T Consensus       155 ~~~~~~~~~v~~~~~~~~~-----~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  229 (355)
T d1nexb2         155 GVLRGHMASVRTVSGHGNI-----VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD  229 (355)
T ss_dssp             EEEECCSSCEEEEEEETTE-----EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             eeeeeccccccccccccce-----eeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeee
Confidence                 01122345566665     67888999999999999998888888888999999999999999999999999999


Q ss_pred             CCCceeeccccccccCccEEEEEEccC
Q 022184          273 VKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      +++++.+..+ .+| ...|.+++|+++
T Consensus       230 ~~~~~~~~~~-~~h-~~~v~~~~~~~~  254 (355)
T d1nexb2         230 LENGELMYTL-QGH-TALVGLLRLSDK  254 (355)
T ss_dssp             TTTCCEEEEE-CCC-SSCCCEEEECSS
T ss_pred             cccccccccc-ccc-cccccccccccc
Confidence            9999888877 678 889999999864

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.8e-27  Score=185.92  Aligned_cols=187  Identities=17%  Similarity=0.225  Sum_probs=148.2

Q ss_pred             ECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc
Q 022184           71 VNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (301)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  150 (301)
                      +.+....+++++.|+.|++|+.........+.       .|..  ....+++++.++++++.||.|++||++.++.+...
T Consensus       143 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-------~~~~--~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~  213 (342)
T d2ovrb2         143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ-------GHTN--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL  213 (342)
T ss_dssp             EEECSSCEEEEETTSCEEEEEGGGTEEEEEEC-------CCSS--CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             eccccceeeeecCCCeEEEeecccceeeEEEc-------Cccc--ccccccCCCCEEEEEeCCCeEEEeecccceeeeEe
Confidence            34456678888899999999987665422221       1223  34556668899999999999999999999988888


Q ss_pred             ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC--CCeeEEEEccCCCcceEEEEEEeCCcceEEE
Q 022184          151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (301)
Q Consensus       151 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~  228 (301)
                      ..|...+.+++++  +++|++++.|+.|++||+...+....+..+..  ..+.++.++  +++     +++++.||.|++
T Consensus       214 ~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~s~s~Dg~i~i  284 (342)
T d2ovrb2         214 TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF-----VITSSDDGTVKL  284 (342)
T ss_dssp             CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE-----EEEEETTSEEEE
T ss_pred             cccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCe-----eEEEcCCCEEEE
Confidence            8888889888776  46999999999999999999988888765443  345555554  454     688899999999


Q ss_pred             EEccCceEeeeee-----ccCCCcEEEEEcCCCCEEEEeeCCCc----EEEEeCCC
Q 022184          229 YDISTWNKIGHKR-----LLRKPASVLSISLDGKYLAMGSKDGD----ICVVDVKK  275 (301)
Q Consensus       229 ~d~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~----i~i~~~~~  275 (301)
                      ||+++++.+..+.     .|...|++++|+|++.+|++|+.||+    |++||++.
T Consensus       285 wd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         285 WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9999998876654     45667999999999999999998885    99999863

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.4e-27  Score=183.76  Aligned_cols=234  Identities=11%  Similarity=0.055  Sum_probs=172.7

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ....|.+++|.++   . .++.++      .|+.+++|......               ....+..+.+++++..++++ 
T Consensus        45 h~~~V~~~~~~~~---~-~~~s~s------~D~~v~~w~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-   98 (287)
T d1pgua2          45 HSNLIVSLDNSKA---Q-EYSSIS------WDDTLKVNGITKHE---------------FGSQPKVASANNDGFTAVLT-   98 (287)
T ss_dssp             CCSCEEEEECCST---T-CCEEEE------TTTEEEETTEEEEE---------------CSSCEEEEEECSSSEEEEEE-
T ss_pred             CCCCEEEEEecCC---C-eEEEEe------eccccccccccccc---------------cccceeeeeeccCCceEEEe-
Confidence            3567899999855   2 334433      67788998764221               23457788899988777765 


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC-eEEEEeCCCcceecccc-cCCccEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRIILDEP-KAHKSVLDM  160 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~-~~~~~i~~~  160 (301)
                      .++.+.+|+..+++.....        ....  ...+++++++.+++++.++ .+++|++...+...... .+..+++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~  168 (287)
T d1pgua2          99 NDDDLLILQSFTGDIIKSV--------RLNS--PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI  168 (287)
T ss_dssp             TTSEEEEEETTTCCEEEEE--------ECSS--CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred             ecccceeeeccceeeeeec--------cccc--eeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEE
Confidence            5556889988776542221        1222  2456788888888888764 79999997766554443 355689999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE-----EEEEEeCCcceEEEEEccC-c
Q 022184          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL-----FCTVQRGDKALLAVYDIST-W  234 (301)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~d~~~-~  234 (301)
                      +|+|++++|++++.|+.|++||+.+++........|..+|.+++|+|.+.....     -.+++++.|+.|++||+++ .
T Consensus       169 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~  248 (287)
T d1pgua2         169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  248 (287)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             EeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence            999999999999999999999999988766554455667999999987642110     0168899999999999876 4


Q ss_pred             eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184          235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (301)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~  273 (301)
                      +.+..+.+|...|++++|+|++ .|++++.|+.|++|++
T Consensus       249 ~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         249 KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            5566677899999999999986 5889999999999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.7e-26  Score=183.72  Aligned_cols=235  Identities=12%  Similarity=0.130  Sum_probs=171.3

Q ss_pred             ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCe
Q 022184           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGH  135 (301)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~  135 (301)
                      ...++|++.|++++|+|++++||+++.|++|++||++.......+.    ....|..+|.+++|+|+ +.+|++|+.|+.
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~----~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL----QSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEE----EEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEE----EecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            4578999999999999999999999999999999998765433222    22247889999999996 457899999999


Q ss_pred             EEEEeCCCcceecccccCCc-cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec-----CCCCeeEEEEccCC
Q 022184          136 LRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-----SDEKIELCRFSKDG  209 (301)
Q Consensus       136 i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~  209 (301)
                      |++|++...........+.. ......+.++...+++++.|+.+++||++.+.........     .........+.+.+
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            99999988776555544443 3445556678889999999999999998765433332211     11234556777777


Q ss_pred             CcceEEEEEEeCCcceEEEEEccCceEeee---eeccCCCcEEEEEc-CCCCEEEEeeCCCcEEEEeCCCceeecc----
Q 022184          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGH---KRLLRKPASVLSIS-LDGKYLAMGSKDGDICVVDVKKMEINHW----  281 (301)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~i~~~~~~~~~~~----  281 (301)
                      ..     ++.++.|+.|++||++..+....   ............+. .++..+++++.||.+.+|+.........    
T Consensus       161 ~~-----~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~  235 (342)
T d1yfqa_         161 SR-----LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             SE-----EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             Cc-----eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc
Confidence            76     67888999999999987654322   22233445555554 4678999999999999999865432211    


Q ss_pred             ----------ccccccCccEEEEEEccCCC
Q 022184          282 ----------SKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       282 ----------~~~~~~~~~v~~~~~spdg~  301 (301)
                                ....| ...|++++|+|+|+
T Consensus       236 ~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~  264 (342)
T d1yfqa_         236 FAFRCHRLNLKDTNL-AYPVNSIEFSPRHK  264 (342)
T ss_dssp             EEEECCCCCTTCCSS-CCCEEEEEECTTTC
T ss_pred             ceeeeeeeccCCCcc-cccceeEEecCCcc
Confidence                      11234 56799999999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=9.6e-26  Score=181.30  Aligned_cols=199  Identities=13%  Similarity=0.024  Sum_probs=160.5

Q ss_pred             ceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC--eEEEEeCC
Q 022184           66 PMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHWP  142 (301)
Q Consensus        66 v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~v~d~~  142 (301)
                      ...-.||| ||+++|+++ +|.|++||++++...         .+.|...|.+++|+|||++|++++.+.  .|++||++
T Consensus         5 ~~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~---------~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~   74 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL---------KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR   74 (360)
T ss_dssp             GGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE---------ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT
T ss_pred             hhcccccCCCCCEEEEEE-CCeEEEEECCCCcEE---------EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC
Confidence            34577999 999999886 468999999776541         124778899999999999998876553  79999998


Q ss_pred             CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE-----
Q 022184          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT-----  217 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----  217 (301)
                      +++.. .+..+...+.+++|+|++++|++++.++.+++|++.+++....+..+. ..+.+++|+|+|+++.+...     
T Consensus        75 ~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~la~~~~~~~~~  152 (360)
T d1k32a3          75 TGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE-AMITDFTISDNSRFIAYGFPLKHGE  152 (360)
T ss_dssp             TCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-SCCCCEEECTTSCEEEEEEEECSST
T ss_pred             CCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeeccc-ccccchhhccceeeeeeeccccccc
Confidence            87764 566788899999999999999999999999999999998887776554 46889999999997321110     


Q ss_pred             EEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      ..+..++.+++||+.+++... ...+...+..++|+|||++|++++.++.+.+|+.....
T Consensus       153 ~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         153 TDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             TCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             eeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccc
Confidence            024456789999999887653 44556778889999999999999999999999987654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=4.8e-25  Score=181.72  Aligned_cols=257  Identities=9%  Similarity=0.034  Sum_probs=170.5

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  112 (301)
                      .++.+++|+.....  .      ...+..| ..+..++|+|||++|++++.|+++++||+.+++.......  .....|.
T Consensus        40 ~dg~v~vwD~~t~~--~------~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i--~~~~~~~  108 (426)
T d1hzua2          40 DAGQIALVDGDSKK--I------VKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--KIGIEAR  108 (426)
T ss_dssp             TTTEEEEEETTTCS--E------EEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--ECCSEEE
T ss_pred             CCCEEEEEECCCCc--E------EEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE--eCCCCCc
Confidence            67888998775432  2      2335555 4589999999999999999999999999988764322111  1111234


Q ss_pred             CCeeEEEEeeCCCEEEEe-ecCCeEEEEeCCCcceecccccCC-----------ccEEEEEecCCCcEEEEEe-CCCcEE
Q 022184          113 GPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAH-----------KSVLDMDFSLDSEFLATTS-TDGSAR  179 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~-~d~~i~  179 (301)
                      ..+.+++|+|||++++++ ..++.+++||..+++.......+.           .....+.+++++..++... ..+.+.
T Consensus       109 ~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~  188 (426)
T d1hzua2         109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL  188 (426)
T ss_dssp             EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            455677888999987555 578999999999887765544333           2345566666666555444 335566


Q ss_pred             EEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEE-------------------------------------------
Q 022184          180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC-------------------------------------------  216 (301)
Q Consensus       180 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------------------------------------  216 (301)
                      +++.................+..+.|+|+++++++..                                           
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (426)
T d1hzua2         189 LVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVW  268 (426)
T ss_dssp             EEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEE
T ss_pred             EEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceE
Confidence            6666555433333333445688899999998743211                                           


Q ss_pred             EEEeCCcceEEEEEccC-------ceEeeeeeccCCCcEEEEEcCCCCEEEE-------eeCCCcEEEEeCCCceeeccc
Q 022184          217 TVQRGDKALLAVYDIST-------WNKIGHKRLLRKPASVLSISLDGKYLAM-------GSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       217 ~~~~~~~~~i~~~d~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~-------~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      ......++.+.+|+...       ++....+..|...+..++|+||+++|++       +..+++|+|||+.+++....+
T Consensus       269 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             EEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             EeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence            11122344455554332       2344556677788999999999999995       456789999999988765433


Q ss_pred             c--------ccccCccEEEEEEccCCC
Q 022184          283 K--------RLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       283 ~--------~~~~~~~v~~~~~spdg~  301 (301)
                      .        ..+ ...|.+++||||||
T Consensus       349 ~~~~~~~~~~~~-~~rv~~~~fSpDGk  374 (426)
T d1hzua2         349 LPIAEWADLGEG-AKRVVQPEYNKRGD  374 (426)
T ss_dssp             ECHHHHHCCCSS-CCCEEEEEECSSSS
T ss_pred             eccchhcccCCC-CccEEEEEECCCCC
Confidence            1        233 56799999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-23  Score=163.98  Aligned_cols=215  Identities=14%  Similarity=0.201  Sum_probs=164.3

Q ss_pred             cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEE
Q 022184           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (301)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (301)
                      ...+|...|+|++|  ++++||+|+.||+|+|||+++++....+       ..|...|.+++|  ++++|++|+.|+.|+
T Consensus        10 ~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l-------~~H~~~V~~v~~--~~~~l~s~s~D~~i~   78 (293)
T d1p22a2          10 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-------TGHTGSVLCLQY--DERVIITGSSDSTVR   78 (293)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-------CCCSSCEEEEEC--CSSEEEEEETTSCEE
T ss_pred             ccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEE-------ecCCCCEeeeec--ccceeeccccccccc
Confidence            35577888998765  7899999999999999999887653322       237789998887  678999999999999


Q ss_pred             EEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE--eecCCCCeeEEEEccCCCcceEE
Q 022184          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL--TRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      +|++..+............  ...+.+....++++..++.+.+|+..........  ...+...+..+.+.+.  .    
T Consensus        79 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~----  150 (293)
T d1p22a2          79 VWDVNTGEMLNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--Y----  150 (293)
T ss_dssp             EEESSSCCEEEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT--E----
T ss_pred             ccccccccccccccccccc--cccccccccceeecccccceeEeeccccccccccccccccccccccceeccc--c----
Confidence            9999988776555444333  3345556778999999999999999876543322  2233445666666554  2    


Q ss_pred             EEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEE
Q 022184          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~  295 (301)
                       ..+++.|+.|++||.++++.+..+..+...+..+.++  +.++++++.|+.|++||+++.+.+... ..+ ...+..+.
T Consensus       151 -~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~-~~~v~~~~  225 (293)
T d1p22a2         151 -IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL-EGH-EELVRCIR  225 (293)
T ss_dssp             -EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE-CCC-SSCEEEEE
T ss_pred             -cccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeee-ccc-ceeeeecc
Confidence             4677789999999999999988888888888777765  568999999999999999998887765 455 56666544


Q ss_pred             E
Q 022184          296 F  296 (301)
Q Consensus       296 ~  296 (301)
                      +
T Consensus       226 ~  226 (293)
T d1p22a2         226 F  226 (293)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.7e-23  Score=166.38  Aligned_cols=254  Identities=14%  Similarity=0.102  Sum_probs=173.8

Q ss_pred             EEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEE-EEecCCcEEEEEEcCCcccc
Q 022184           21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDI   99 (301)
Q Consensus        21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~d~~i~~w~~~~~~~~~   99 (301)
                      ++++++      .++.+.+|+.....  +..    ......+...+.+++|+|||++++ +++.++.|.+||+.+++...
T Consensus         3 ~~vt~~------~d~~v~v~D~~s~~--~~~----~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~   70 (337)
T d1pbyb_           3 YILAPA------RPDKLVVIDTEKMA--VDK----VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG   70 (337)
T ss_dssp             EEEEEE------TTTEEEEEETTTTE--EEE----EEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEEEEc------CCCEEEEEECCCCe--EEE----EEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence            566644      67888888775432  211    222344556788999999999875 55678999999999887644


Q ss_pred             ccccccCCCCCCCCCeeEEEEeeCCCEEEEeec------------CCeEEEEeCCCcceecccccCCccEEEEEecCCCc
Q 022184          100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE  167 (301)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  167 (301)
                      ......  ...+...+..++|+|++++++++..            +..+.+||..+++....+. ....+..++|+|||+
T Consensus        71 ~~~~~~--~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~  147 (337)
T d1pbyb_          71 RIDLST--PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGS  147 (337)
T ss_dssp             EEECCB--TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSS
T ss_pred             EEecCC--CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCC
Confidence            332211  1112234567999999999987763            5678899999888766554 345678899999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEee-----------------------------------------------------
Q 022184          168 FLATTSTDGSARIWKTEDGVAWTFLTR-----------------------------------------------------  194 (301)
Q Consensus       168 ~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------------------------------------------------  194 (301)
                      ++++++.  .+.+||..+++....+..                                                     
T Consensus       148 ~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (337)
T d1pbyb_         148 KLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             CEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             EEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence            9998864  467788776655444321                                                     


Q ss_pred             ------------cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEe
Q 022184          195 ------------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (301)
Q Consensus       195 ------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  262 (301)
                                  ++...+..+.++|++..     ++.  .++.|++||+.+++.+..+. +...+.+++|+|||++|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~  297 (337)
T d1pbyb_         226 LETGEMAMREVRIMDVFYFSTAVNPAKTR-----AFG--AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECTTSSE-----EEE--EESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEE
T ss_pred             cCCCcEEEEEecCCCcceEEEEecccceE-----EEE--ccccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEE
Confidence                        11112334445555553     222  25789999999999887665 45678999999999999999


Q ss_pred             eCCCcEEEEeCCCceeeccccccc--cCccEEEEEEccC
Q 022184          263 SKDGDICVVDVKKMEINHWSKRLH--LGTSIALVEFCPT  299 (301)
Q Consensus       263 ~~d~~i~i~~~~~~~~~~~~~~~~--~~~~v~~~~~spd  299 (301)
                      +.++.|++||..+++.+..+....  ......-.-|++|
T Consensus       298 ~~~~~i~v~D~~t~~~v~~i~~~g~~~~~~~~~~~~~~~  336 (337)
T d1pbyb_         298 GALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD  336 (337)
T ss_dssp             SBSSEEEEEETTTCCEEEEEECGGGCCCBTCCCEEEECC
T ss_pred             eCCCcEEEEECCCCcEEEEEECCCCCccceeeeeEEcCC
Confidence            999999999999998887664211  0223334446555

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=7.4e-22  Score=154.46  Aligned_cols=249  Identities=13%  Similarity=0.125  Sum_probs=181.6

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE-e
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-T   82 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~   82 (301)
                      +..+..++|+||   ++++++++     ..++.+.+|+.....  .      ...+..|. .+..++|++++..++++ .
T Consensus        31 g~~p~~va~spd---G~~l~v~~-----~~~~~i~v~d~~t~~--~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~   93 (301)
T d1l0qa2          31 GSNPMGAVISPD---GTKVYVAN-----AHSNDVSIIDTATNN--V------IATVPAGS-SPQGVAVSPDGKQVYVTNM   93 (301)
T ss_dssp             SSSEEEEEECTT---SSEEEEEE-----GGGTEEEEEETTTTE--E------EEEEECSS-SEEEEEECTTSSEEEEEET
T ss_pred             CCCceEEEEeCC---CCEEEEEE-----CCCCEEEEEECCCCc--e------eeeeeccc-ccccccccccccccccccc
Confidence            345678999987   55554322     245667887765432  2      12234443 46899999999876654 5


Q ss_pred             cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEE-eecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (301)
Q Consensus        83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  161 (301)
                      .++.+.+|+..+++....        +.+.....++.|+|+++.++. +..++.+.+|+..+.+....+. ....+..++
T Consensus        94 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  164 (301)
T d1l0qa2          94 ASSTLSVIDTTSNTVAGT--------VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VGRSPKGIA  164 (301)
T ss_dssp             TTTEEEEEETTTTEEEEE--------EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CCSSEEEEE
T ss_pred             ccceeeecccccceeeee--------ccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc-cCCCceEEE
Confidence            667899999887764222        224456789999999988754 4567889999999888766554 345678899


Q ss_pred             ecCCCcEEEEEeCC-CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184          162 FSLDSEFLATTSTD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (301)
Q Consensus       162 ~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  240 (301)
                      ++|+++.++++..+ +.+.+|+....+.......+  ..+..++|++++..+++  ......++.|.+||+.+++.+..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~v--~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGTKAYV--TNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SEEEEEEECTTSSEEEE--EEECSSCCEEEEEETTTTEEEEEE
T ss_pred             eeccccceeeecccccccccccccceeeeeccccc--CCcceeecccccccccc--ccccceeeeeeeeecCCCeEEEEE
Confidence            99999988877755 56778887777766666533  34788999999997432  344556789999999999888766


Q ss_pred             eccCCCcEEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeecccc
Q 022184          241 RLLRKPASVLSISLDGKYL-AMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      .. ...+..++|+|||++| ++++.++.|++||+++++++..+.
T Consensus       241 ~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         241 PV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            54 4567999999999987 466778999999999999887764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=8.9e-23  Score=168.02  Aligned_cols=262  Identities=8%  Similarity=0.035  Sum_probs=177.8

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE-
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-   81 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-   81 (301)
                      .+..+..++|+||   ++++++++      .++.+++|+++.........   .....+|...+.+++|+|||++++++ 
T Consensus        60 ~g~~~~~vafSPD---Gk~l~~~~------~d~~v~vwd~~t~~~~~~~~---i~~~~~~~~~~~s~~~spDG~~l~v~~  127 (426)
T d1hzua2          60 TGYAVHISRMSAS---GRYLLVIG------RDARIDMIDLWAKEPTKVAE---IKIGIEARSVESSKFKGYEDRYTIAGA  127 (426)
T ss_dssp             CCSSEEEEEECTT---SCEEEEEE------TTSEEEEEETTSSSCEEEEE---EECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCCeeEEEECCC---CCEEEEEe------CCCCEEEEEccCCceeEEEE---EeCCCCCcceEEeeeecCCCCEEEEee
Confidence            3456889999988   66777754      56778999887655332111   12234677778889999999987654 


Q ss_pred             ecCCcEEEEEEcCCcccccccccc----CCCCCCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCccee-cccccCCc
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKK----MPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRII-LDEPKAHK  155 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~-~~~~~~~~  155 (301)
                      ..++.+.+||..............    ...+.+......+.+++++..++.... .+.+.+++....... .....+..
T Consensus       128 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  207 (426)
T d1hzua2         128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP  207 (426)
T ss_dssp             EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS
T ss_pred             cCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCC
Confidence            578999999998876533322111    122234456677888888887766554 466777776554432 22334556


Q ss_pred             cEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCceEEE-------------------------------------------
Q 022184          156 SVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTF-------------------------------------------  191 (301)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~-------------------------------------------  191 (301)
                      .+..++|+|++++++++. .+..+.+++..+++....                                           
T Consensus       208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~  287 (426)
T d1hzua2         208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN  287 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred             ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc
Confidence            788999999999777665 444566777665443322                                           


Q ss_pred             -----------EeecCCCCeeEEEEccCCCcceEEEEE-------EeCCcceEEEEEccCceEeeee---------eccC
Q 022184          192 -----------LTRNSDEKIELCRFSKDGTKPFLFCTV-------QRGDKALLAVYDISTWNKIGHK---------RLLR  244 (301)
Q Consensus       192 -----------~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~d~~~~~~~~~~---------~~~~  244 (301)
                                 +..+ ...+..++|+|++++     ++       .+..+++|++||+++++....+         ..+.
T Consensus       288 ~~~~~~~~~~~l~g~-~~~v~~v~~sPdg~~-----l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~  361 (426)
T d1hzua2         288 HPQYAWKKVAELQGQ-GGGSLFIKTHPKSSH-----LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA  361 (426)
T ss_dssp             CTTTBTSEEEEEECS-SSCCCCEECCTTCSE-----EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred             cccccceEeEEEecC-CCceeEEEcCCCCce-----EEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCC
Confidence                       2222 334788999999997     34       2445789999999988755433         2344


Q ss_pred             CCcEEEEEcCCCCEEEEe-----eCCCcEEEEeCCCceeeccc
Q 022184          245 KPASVLSISLDGKYLAMG-----SKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~-----~~d~~i~i~~~~~~~~~~~~  282 (301)
                      ..+..++|||||++++++     +.++.|+|||.+++++...+
T Consensus       362 ~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i  404 (426)
T d1hzua2         362 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV  404 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEE
Confidence            568899999999977543     35788999999999988766

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=1.2e-21  Score=153.25  Aligned_cols=241  Identities=15%  Similarity=0.177  Sum_probs=179.6

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEE-EEecCCcEEEEEEcCCccccccccccCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      .++.|.+|+.+..  ++.      ..+. ....+..++|+|+|++|+ +++.++.|++||+.+++....+        ..
T Consensus        10 ~~~~v~v~D~~t~--~~~------~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~--------~~   72 (301)
T d1l0qa2          10 ESDNISVIDVTSN--KVT------ATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV--------PA   72 (301)
T ss_dssp             TTTEEEEEETTTT--EEE------EEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE--------EC
T ss_pred             CCCEEEEEECCCC--eEE------EEEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee--------ec
Confidence            5667788776443  322      1222 234578999999999875 5667899999999887653322        22


Q ss_pred             CCCeeEEEEeeCCCEEEE-eecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEE-EEeCCCcEEEEeCCCCceE
Q 022184          112 AGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAW  189 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~-~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~  189 (301)
                      ...+..+.|++++..+++ +..++.+.+|+..+++....+. +.....++.|+|+++.++ ++..++.+.+|+..+.+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  151 (301)
T d1l0qa2          73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cccccccccccccccccccccccceeeecccccceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeecccccee
Confidence            345788999999987654 5567899999999888766554 445678899999999765 4556788999999999888


Q ss_pred             EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeC---CC
Q 022184          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---DG  266 (301)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~  266 (301)
                      ..+....  .+..++++|++..+    +++....+.+.+|+....+....... ...+..++|+++++.+++++.   ++
T Consensus       152 ~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~  224 (301)
T d1l0qa2         152 NTVSVGR--SPKGIAVTPDGTKV----YVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFN  224 (301)
T ss_dssp             EEEECCS--SEEEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             eecccCC--CceEEEeeccccce----eeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceee
Confidence            8776443  48899999999973    34455667888999888776655443 455678999999998877643   36


Q ss_pred             cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       267 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .|++||+.+++....+..   ...+.+++|+|||+
T Consensus       225 ~v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~  256 (301)
T d1l0qa2         225 TVSMIDTGTNKITARIPV---GPDPAGIAVTPDGK  256 (301)
T ss_dssp             EEEEEETTTTEEEEEEEC---CSSEEEEEECTTSS
T ss_pred             eeeeeecCCCeEEEEEcC---CCCEEEEEEeCCCC
Confidence            799999999998876632   35689999999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=5.6e-22  Score=163.15  Aligned_cols=189  Identities=8%  Similarity=-0.030  Sum_probs=133.4

Q ss_pred             CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCC
Q 022184           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      ..++.+.+|+.+...  +      ...+..| ..+..++|+|||+++++++.|+++++||+.+++.......  .....+
T Consensus        39 ~d~g~v~v~D~~t~~--v------~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i--~~~~~~  107 (432)
T d1qksa2          39 RDAGQIALIDGSTYE--I------KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI--KIGSEA  107 (432)
T ss_dssp             TTTTEEEEEETTTCC--E------EEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE--ECCSEE
T ss_pred             cCCCEEEEEECCCCc--E------EEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEE--ecCCCC
Confidence            366777888765433  2      2234444 3699999999999999999999999999987654221110  011123


Q ss_pred             CCCeeEEEEeeCCCEE-EEeecCCeEEEEeCCCcceeccccc-----------CCccEEEEEecCCCcEE-EEEeCCCcE
Q 022184          112 AGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPK-----------AHKSVLDMDFSLDSEFL-ATTSTDGSA  178 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l-~~~~~d~~i  178 (301)
                      .+.+.+..|+|||++| ++++.++.|++||..+++.+..+..           .......+.++|++..+ ++...++.|
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            3445556778899986 6777899999999999887654432           22356678999999865 556678999


Q ss_pred             EEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (301)
Q Consensus       179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  235 (301)
                      .+||..+.+.......+....+..++|+|+|+++    +++...+..+.++|..+++
T Consensus       188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~----~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF----ITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE----EEEEGGGTEEEEEETTTTE
T ss_pred             EEEEccCCCcceEEEEcccCccccceECCCCCEE----EEeccccceEEEeecccce
Confidence            9999998876655554555568999999999973    3445556677888776543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=1.3e-21  Score=155.96  Aligned_cols=248  Identities=14%  Similarity=0.051  Sum_probs=159.3

Q ss_pred             eeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccc-ccCCcceEEEECCCCCeEE-EEecCCcEE
Q 022184           11 SWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFV-CSTTNGGCK   88 (301)
Q Consensus        11 ~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~-~~~~d~~i~   88 (301)
                      +++++   +.++++++      .++.|.+|+.+..  ++.      ..+. .|...+.+++|+|||++++ ++..++.|+
T Consensus         3 a~~~~---~~~l~~~~------~~~~v~v~D~~t~--~~~------~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~   65 (346)
T d1jmxb_           3 ALKAG---HEYMIVTN------YPNNLHVVDVASD--TVY------KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY   65 (346)
T ss_dssp             CCCTT---CEEEEEEE------TTTEEEEEETTTT--EEE------EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred             cCCCC---CcEEEEEc------CCCEEEEEECCCC--CEE------EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEE
Confidence            56655   67888866      6677788877643  221      2222 3456688999999999875 455789999


Q ss_pred             EEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee------------cCCeEEEEeCCCcceecccccC--C
Q 022184           89 LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIILDEPKA--H  154 (301)
Q Consensus        89 ~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------~dg~i~v~d~~~~~~~~~~~~~--~  154 (301)
                      +||+.+++........ .....+...+..++|+|||+++++++            .++.+.+|+..+++....+..+  .
T Consensus        66 ~~d~~t~~~~~~~~~~-~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  144 (346)
T d1jmxb_          66 GIDLDTCKNTFHANLS-SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP  144 (346)
T ss_dssp             EEETTTTEEEEEEESC-CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred             EEeCccCeeeeeeccc-ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc
Confidence            9999887654332211 11111223456799999999987765            3677888888776554332211  1


Q ss_pred             ccEEEEEecCCCcEEEEE--------------------------------------------------------------
Q 022184          155 KSVLDMDFSLDSEFLATT--------------------------------------------------------------  172 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~--------------------------------------------------------------  172 (301)
                      ..+..+.+++++..++++                                                              
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (346)
T d1jmxb_         145 RQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA  224 (346)
T ss_dssp             SSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C
T ss_pred             CceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEe
Confidence            223334444444433321                                                              


Q ss_pred             --eCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEE
Q 022184          173 --STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL  250 (301)
Q Consensus       173 --~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~  250 (301)
                        ..+..+.+||+.++.........+...+..+.+++++..     ++.. .++.|.+||..+++.+..+. +...+.++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~v~v~d~~~~~~~~~~~-~~~~~~~v  297 (346)
T d1jmxb_         225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-----QIYG-VLNRLAKYDLKQRKLIKAAN-LDHTYYCV  297 (346)
T ss_dssp             CCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-----EEEE-EESEEEEEETTTTEEEEEEE-CSSCCCEE
T ss_pred             eccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCE-----EEEe-cCCeEEEEECCCCcEEEEEc-CCCCEEEE
Confidence              111223344444443333332233334566677777765     2222 24579999999998887665 45678999


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          251 SISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       251 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      +|+|||++|++++.|+.|++||+++++.+..+.
T Consensus       298 a~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         298 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             EECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            999999999999999999999999999887764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.89  E-value=3.5e-20  Score=149.52  Aligned_cols=276  Identities=8%  Similarity=-0.019  Sum_probs=178.6

Q ss_pred             CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (301)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (301)
                      ..+|+.+.+++||.  ..+++....    ..+...++|.+|....+...      .+..+..  ..++|+|||++|+++.
T Consensus        19 ~~~p~~~~a~spdg--~~~~~~~~~----~~~~~~~v~v~D~~tg~~~~------~~~~~~~--~~~a~SpDG~~l~va~   84 (373)
T d2madh_          19 ADGPTNDEAPGADG--RRSYINLPA----HHSAIIQQWVLDAGSGSILG------HVNGGFL--PNPVAAHSGSEFALAS   84 (373)
T ss_pred             CCCCccccccCCCC--CEEEEEccc----ccCCCceEEEEECCCCCEEE------EEeCCCC--ccEEEcCCCCEEEEEe
Confidence            35788999999884  333333221    12334467777766654422      2333333  3799999999998875


Q ss_pred             ----------cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee--cCCeEEEEeCCCcceeccc
Q 022184           83 ----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDE  150 (301)
Q Consensus        83 ----------~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~  150 (301)
                                .++.|.+||..+++.....................+.|+++++.++...  .++.+.+|+....+.... 
T Consensus        85 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-  163 (373)
T d2madh_          85 TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL-  163 (373)
T ss_pred             ecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE-
Confidence                      3578999999988764333222111111122345689999999876654  356788998877655332 


Q ss_pred             ccCCccEEEEEecCCCcE-EEEEeCCCcEEEEeCCCCceEEEEeecC---------------------------------
Q 022184          151 PKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNS---------------------------------  196 (301)
Q Consensus       151 ~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------------------------  196 (301)
                         .....++.++|+++. +++.+.|+.+.+|+...++.........                                 
T Consensus       164 ---~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  240 (373)
T d2madh_         164 ---LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQAD  240 (373)
T ss_pred             ---eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEE
Confidence               234567889998874 4677889999999977654432211000                                 


Q ss_pred             -------------------------CCCeeEEEEccCCCcceEE-----EEEEeCCcceEEEEEccCceEeeeeeccCCC
Q 022184          197 -------------------------DEKIELCRFSKDGTKPFLF-----CTVQRGDKALLAVYDISTWNKIGHKRLLRKP  246 (301)
Q Consensus       197 -------------------------~~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  246 (301)
                                               ......+++++++..++..     .++....++.+.+||..+++.+..+. +...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~  319 (373)
T d2madh_         241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHD  319 (373)
T ss_pred             cCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCC
Confidence                                     0011234555555543221     12345566789999999998877654 4567


Q ss_pred             cEEEEEcCCCCE--EEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184          247 ASVLSISLDGKY--LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (301)
Q Consensus       247 v~~~~~s~~~~~--l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd  299 (301)
                      +..++|+|||+.  +++++.|+.|++||+.+++.+..+. .+ ....+.+++.++
T Consensus       320 ~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~-~~-g~~P~~l~~~~~  372 (373)
T d2madh_         320 VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV-EL-GSGPQVLSVMNE  372 (373)
T ss_pred             eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC-CC-CCCCcEEEEecC
Confidence            899999999984  4678899999999999999998873 44 566777777654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=2.8e-21  Score=158.97  Aligned_cols=194  Identities=11%  Similarity=0.028  Sum_probs=148.3

Q ss_pred             eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee--ccc---c
Q 022184           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LDE---P  151 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~---~  151 (301)
                      ++++.+.+|+|.|||.++++....+.        ....+..++|||||+++++++.|+.+++||+.+++..  ..+   .
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~--------~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~  105 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLD--------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS  105 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEE--------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe--------CCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence            45788899999999999988744432        2246899999999999999999999999999887632  222   2


Q ss_pred             cCCccEEEEEecCCCcEE-EEEeCCCcEEEEeCCCCceEEEEeec----------CCCCeeEEEEccCCCcceEEEEEEe
Q 022184          152 KAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRN----------SDEKIELCRFSKDGTKPFLFCTVQR  220 (301)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~  220 (301)
                      .+.+.+.+.+|+|||++| ++++.++.+++||..+++.+..+..+          .......+.++|++..+    +++.
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~----~vs~  181 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF----IVNV  181 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE----EEEE
T ss_pred             CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEE----EEEE
Confidence            333456667788999975 67888999999999999988877532          22346678899999863    4667


Q ss_pred             CCcceEEEEEccCceEeeeee-ccCCCcEEEEEcCCCCEEEEeeCC-CcEEEEeCCCceeeccc
Q 022184          221 GDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKD-GDICVVDVKKMEINHWS  282 (301)
Q Consensus       221 ~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-~~i~i~~~~~~~~~~~~  282 (301)
                      ..++.|.+||..+.+...... .....+..++|+|+|+++++++.+ +.+.+++..+++.....
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             ccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            788999999998876543332 345567899999999988887654 57999999888766543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=8.6e-20  Score=144.66  Aligned_cols=233  Identities=11%  Similarity=0.108  Sum_probs=152.3

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCC
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      .++.|++|+++..+...      ......|.+.+..++|+|||++|++++ .|+.|++|++............    ...
T Consensus        12 ~~~~I~v~~~~~~~~l~------~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~----~~~   81 (333)
T d1ri6a_          12 ESQQIHVWNLNHEGALT------LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE----SAL   81 (333)
T ss_dssp             GGTEEEEEEECTTSCEE------EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE----EEC
T ss_pred             CCCcEEEEEEcCCCCeE------EEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee----ccc
Confidence            67889999998655311      122345778899999999999996655 4799999999876543332221    113


Q ss_pred             CCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcceec--ccccCCccEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCc
Q 022184          112 AGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGV  187 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~  187 (301)
                      ...+..++|+|||++|++++. ++.+.+|+........  ....+...+.++.++|++++++.++. +..+.+|+.....
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            345678999999999988875 6789999876554322  23344557888999999998887764 4568888875432


Q ss_pred             eEEEE-----eecCCC-----------------------------------------------------CeeEEEEccCC
Q 022184          188 AWTFL-----TRNSDE-----------------------------------------------------KIELCRFSKDG  209 (301)
Q Consensus       188 ~~~~~-----~~~~~~-----------------------------------------------------~v~~~~~~~~~  209 (301)
                      .....     ......                                                     ....+++++++
T Consensus       162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  241 (333)
T d1ri6a_         162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG  241 (333)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             cceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEeccc
Confidence            21110     000111                                                     12345566666


Q ss_pred             CcceEEEEEEeCCcceEEEEEccCceEeee---eeccCCCcEEEEEcCCCCEEEEeeC-CCcEEEE--eCCCceee
Q 022184          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGH---KRLLRKPASVLSISLDGKYLAMGSK-DGDICVV--DVKKMEIN  279 (301)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~--~~~~~~~~  279 (301)
                      +++    .+....++.+.+|++........   .......+..++|+|||++|++++. ++.|.+|  |.+++++.
T Consensus       242 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         242 RHL----YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             SEE----EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             Cce----eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence            642    34455667788887765432222   2223456778999999999887764 5889998  55666543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=2.3e-20  Score=148.11  Aligned_cols=207  Identities=12%  Similarity=0.031  Sum_probs=152.0

Q ss_pred             CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEE-EeecCCeEEEEeCCCcceecccccCC
Q 022184           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAH  154 (301)
Q Consensus        76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~  154 (301)
                      +++++++.|++|++||+++.+....+...     .+...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~-----~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIA-----DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT-----TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECC-----CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC
Confidence            58999999999999999988764333211     1234567899999999874 56778999999999998876665433


Q ss_pred             -----ccEEEEEecCCCcEEEEEe------------CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE
Q 022184          155 -----KSVLDMDFSLDSEFLATTS------------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       155 -----~~i~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (301)
                           ..+..++|+|++++++++.            .+..+.+||..+++....+..+  ..+..++|+|+|++     +
T Consensus        77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~-----l  149 (337)
T d1pbyb_          77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSK-----L  149 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSC-----E
T ss_pred             CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc--CCceEEEEcCCCCE-----E
Confidence                 2456799999999988775            3577899999999988887643  34789999999998     3


Q ss_pred             EEeCCcceEEEEEccCceEeee----------------------------------------------------------
Q 022184          218 VQRGDKALLAVYDISTWNKIGH----------------------------------------------------------  239 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~~~~~~----------------------------------------------------------  239 (301)
                      +.++.+  +.+||..+++....                                                          
T Consensus       150 ~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (337)
T d1pbyb_         150 YGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             EEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             EEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC
Confidence            444433  55666654332211                                                          


Q ss_pred             --------eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          240 --------KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       240 --------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                              ...+...+..+.++|++.+++.+  ++.|++||+.+++.+..+.  + ...+.+++|+|||+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~--~-~~~~~~~~~s~dG~  292 (337)
T d1pbyb_         228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--L-PHSYYSVNVSTDGS  292 (337)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--C-SSCCCEEEECTTSC
T ss_pred             CCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc--C-CCCEEEEEECCCCC
Confidence                    11223345566778888877766  4789999999999888764  3 55789999999996

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.1e-19  Score=145.42  Aligned_cols=252  Identities=12%  Similarity=0.080  Sum_probs=162.0

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe----------cCCcEEEEEEcCCccccccccccCC
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMP  107 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~~w~~~~~~~~~~~~~~~~~  107 (301)
                      .+|.+|.....+..      .+..  +....++|+|||++|++++          .|+.|++||..+++...........
T Consensus        29 ~v~v~D~~tg~~~~------~~~~--g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~  100 (355)
T d2bbkh_          29 QQFVIDGEAGRVIG------MIDG--GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP  100 (355)
T ss_dssp             EEEEEETTTTEEEE------EEEE--CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred             eEEEEECCCCcEEE------EEEC--CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc
Confidence            45556665554422      2332  3344799999999888653          4788999999988764443332222


Q ss_pred             CCCCCCCeeEEEEeeCCCEEEEee--cCCeEEEEeCCCcceecccccCC-------------------------------
Q 022184          108 PLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAH-------------------------------  154 (301)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~-------------------------------  154 (301)
                      ..........++|+|++++++++.  .+..+.+|+..+++.+..+....                               
T Consensus       101 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~  180 (355)
T d2bbkh_         101 RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT  180 (355)
T ss_dssp             CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred             eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCe
Confidence            222334456789999999887764  45788999987776543221110                               


Q ss_pred             --------------ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE--eecC---------CCCeeEEEEccCC
Q 022184          155 --------------KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL--TRNS---------DEKIELCRFSKDG  209 (301)
Q Consensus       155 --------------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~---------~~~v~~~~~~~~~  209 (301)
                                    ..+....+.+++..++.++.++.+++|++..++.....  ..+.         ......+++++++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~  260 (355)
T d2bbkh_         181 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL  260 (355)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred             EEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCC
Confidence                          01223345556666777788899999998876543221  1110         1123568899999


Q ss_pred             CcceEEEEE-----EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCC--EEEEeeCCCcEEEEeCCCceeeccc
Q 022184          210 TKPFLFCTV-----QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK--YLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       210 ~~~~~~~~~-----~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      ..+++....     .......|.+||..+++.+..+.. ...+.+++|+|||+  ++++++.|+.|++||+++++.+..+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence            974432110     011236899999999988776654 34578999999997  4556677899999999999998877


Q ss_pred             cccccCccEEEEEEccCC
Q 022184          283 KRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       283 ~~~~~~~~v~~~~~spdg  300 (301)
                      . .+ ......+.+.++|
T Consensus       340 ~-~~-G~~p~~i~~~d~~  355 (355)
T d2bbkh_         340 N-QL-GHGPQVITTADMG  355 (355)
T ss_dssp             C-CC-CSSCCEEECCCCC
T ss_pred             e-Cc-CCCccEEEeCCCC
Confidence            3 33 4445566665554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=8.9e-20  Score=145.15  Aligned_cols=223  Identities=10%  Similarity=-0.000  Sum_probs=148.3

Q ss_pred             EEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEE-EeecCCeEEEEeCCCccee
Q 022184           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRII  147 (301)
Q Consensus        69 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~v~d~~~~~~~  147 (301)
                      ++|++++++|++++.+++|.+||+++++....+.      +.+...+.+++|+|||++++ ++..++.|++||+.+++.+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~------~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEE------cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee
Confidence            4689999999999999999999999887533221      12345678999999999875 4557899999999998876


Q ss_pred             cccccCC------ccEEEEEecCCCcEEEEEe------------CCCcEEEEeCCCCceEEEEeec-CCCCeeEE-----
Q 022184          148 LDEPKAH------KSVLDMDFSLDSEFLATTS------------TDGSARIWKTEDGVAWTFLTRN-SDEKIELC-----  203 (301)
Q Consensus       148 ~~~~~~~------~~i~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~-----  203 (301)
                      ..+....      ..+..++|+|||+++++++            .+..+.+||..+++....+..+ ....+..+     
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  155 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence            5543322      2456799999999887664            3667888887765432221110 01112222     


Q ss_pred             ---------------------------------EEccCCCcceEE---------------------EEEEeCCcceEEEE
Q 022184          204 ---------------------------------RFSKDGTKPFLF---------------------CTVQRGDKALLAVY  229 (301)
Q Consensus       204 ---------------------------------~~~~~~~~~~~~---------------------~~~~~~~~~~i~~~  229 (301)
                                                       .++|++..++..                     .+.....+..+.+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             SCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             CEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence                                             233333321100                     00111223456666


Q ss_pred             EccCceEee-eeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          230 DISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       230 d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |..++.... ....+...+..+.+++++.+++.... +.|.+||..+++.+..+..   ...+.+++|+|||+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~---~~~~~~va~s~DG~  304 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL---DHTYYCVAFDKKGD  304 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC---SSCCCEEEECSSSS
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcC---CCCEEEEEEcCCCC
Confidence            766655433 23445667788889998888887764 5799999999998887643   45789999999996

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=5.4e-17  Score=130.53  Aligned_cols=241  Identities=8%  Similarity=-0.087  Sum_probs=150.6

Q ss_pred             CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe----------cCCcEEEEEEcCCccccccc
Q 022184           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLL  102 (301)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~~w~~~~~~~~~~~~  102 (301)
                      ..+..++|.+|........      .+..+..  ..++|+|||+.|++++          .|+.|.+||..+.+....+.
T Consensus        42 ~~g~~~~~~~d~~~~~~~~------~~~~~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~  113 (368)
T d1mdah_          42 FAGTTENWVSCAGCGVTLG------HSLGAFL--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             TCSSEEEEEEETTTTEEEE------EEEECTT--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             CCCcceEEEEeCCCCcEEE------EEeCCCC--CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeec
Confidence            4556689999888765532      2333433  3689999999998764          36779999998877644433


Q ss_pred             cccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCCcceecccccCCc-------cEEEEEecCCCcEEEEEeC
Q 022184          103 AKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHK-------SVLDMDFSLDSEFLATTST  174 (301)
Q Consensus       103 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~~  174 (301)
                      ...............++|+|||++|+++. .++.+.+||+.+++....+..+..       ....+.+++|++.++....
T Consensus       114 ~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~  193 (368)
T d1mdah_         114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             CCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEec
Confidence            22222222223345689999999998876 479999999988876654433221       1223444455544333221


Q ss_pred             ------------------------------------CCcEEEEeCCCCceEEEEeecC-----------CCCeeEEEEcc
Q 022184          175 ------------------------------------DGSARIWKTEDGVAWTFLTRNS-----------DEKIELCRFSK  207 (301)
Q Consensus       175 ------------------------------------d~~i~i~d~~~~~~~~~~~~~~-----------~~~v~~~~~~~  207 (301)
                                                          ++.+.+++...+..........           ......+++++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~  273 (368)
T d1mdah_         194 AAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK  273 (368)
T ss_dssp             SSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred             CCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC
Confidence                                                2233344433333222111000           01134578888


Q ss_pred             CCCcceEEEEEEeC------CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCE--EEEeeCCCcEEEEeCCCceee
Q 022184          208 DGTKPFLFCTVQRG------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY--LAMGSKDGDICVVDVKKMEIN  279 (301)
Q Consensus       208 ~~~~~~~~~~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~d~~i~i~~~~~~~~~  279 (301)
                      ++..+|+.  ...+      ....|.+||..+++.+..+.. ...+..++|+|||+.  ++++..++.|++||..+++.+
T Consensus       274 ~~~~~~v~--~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         274 NTDGIMIL--TVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             TTTEEEEE--EEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CCCEEEEE--ecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            88874432  1111      235699999999988776654 356788999999973  456667899999999999998


Q ss_pred             ccccc
Q 022184          280 HWSKR  284 (301)
Q Consensus       280 ~~~~~  284 (301)
                      ..+..
T Consensus       351 ~~i~~  355 (368)
T d1mdah_         351 SSVEL  355 (368)
T ss_dssp             EECCC
T ss_pred             EEEEC
Confidence            88753

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4.4e-17  Score=128.78  Aligned_cols=214  Identities=12%  Similarity=0.057  Sum_probs=137.6

Q ss_pred             EEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCCcceeccc---ccC
Q 022184           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDE---PKA  153 (301)
Q Consensus        78 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~---~~~  153 (301)
                      +++++.|++|++|++........     ...+.+.+.+..++|+|||++|++++ .|+.|++|++.........   ...
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~-----~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTL-----TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEE-----EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEECCCCCcEEEEEEcCCCCeEE-----EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence            46667899999999976543111     22234667889999999999986655 5899999999765433222   223


Q ss_pred             CccEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCceEEEEe-ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184          154 HKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (301)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  231 (301)
                      ...+..++|+|||++|++++. ++.+.+|+........... ..+...+.++.++|+++++    +.....+..|.+|+.
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~----~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL----WVPALKQDRICLFTV  157 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE----EEEEGGGTEEEEEEE
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee----eccccccceeeEEEe
Confidence            345778999999999988874 6789999987766544433 2333457888999999863    233334455666664


Q ss_pred             cCceEe-----------------------------------------------------eeee------ccCCCcEEEEE
Q 022184          232 STWNKI-----------------------------------------------------GHKR------LLRKPASVLSI  252 (301)
Q Consensus       232 ~~~~~~-----------------------------------------------------~~~~------~~~~~v~~~~~  252 (301)
                      ......                                                     ....      ........+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            321000                                                     0000      01123455778


Q ss_pred             cCCCCEEEEee-CCCcEEEEeCCCceeecccc--ccccCccEEEEEEccCCC
Q 022184          253 SLDGKYLAMGS-KDGDICVVDVKKMEINHWSK--RLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       253 s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~--~~~~~~~v~~~~~spdg~  301 (301)
                      +++++++++.. .++.+.+|++..........  ... ...+.+++|+||||
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~a~spDGk  288 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-ETQPRGFNVDHSGK  288 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-SSSCCCEEECTTSS
T ss_pred             ecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC-CCCeeEEEEeCCCC
Confidence            89988766654 56788999887543222211  122 45678899999996

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.75  E-value=4.1e-16  Score=125.30  Aligned_cols=222  Identities=9%  Similarity=-0.061  Sum_probs=149.6

Q ss_pred             ccccCCcceEEEECCCCCeEEEEe-----cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee--
Q 022184           59 FDESEGDPMTIAVNPSGDDFVCST-----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--  131 (301)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~-----~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--  131 (301)
                      ...+..++..++++|+|+.++...     ..+.+.+||.++++....+..         +....++|+|||++|++++  
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~---------~~~~~~a~SpDG~~l~va~~~   86 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG---------GFLPNPVAAHSGSEFALASTS   86 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC---------CCCccEEEcCCCCEEEEEeec
Confidence            346788899999999999987652     345789999888776433221         1223689999999998875  


Q ss_pred             --------cCCeEEEEeCCCcceecccccCCcc-------EEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceEEEEee
Q 022184          132 --------VDGHLRIMHWPSLRIILDEPKAHKS-------VLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTR  194 (301)
Q Consensus       132 --------~dg~i~v~d~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~  194 (301)
                              .++.|.+||..+++.+..+..+...       ...+.|+|+++.++...  .++.+.+|+....+...... 
T Consensus        87 ~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-  165 (373)
T d2madh_          87 FSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-  165 (373)
T ss_pred             CCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-
Confidence                    3578999999999887666544432       24578889998766554  45678899988766544432 


Q ss_pred             cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee---------------------------------
Q 022184          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---------------------------------  241 (301)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---------------------------------  241 (301)
                          ...++.++|+++..    +++...|+.+.+||...++......                                 
T Consensus       166 ----~~~~~~~s~~g~~~----~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  237 (373)
T d2madh_         166 ----SPTCYHIHPGAPST----FYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKIL  237 (373)
T ss_pred             ----cceeEEEecCCCcE----EEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEE
Confidence                24577888888763    3455667777777765432211000                                 


Q ss_pred             ----------------cc----------CCCcEEEEEcCCCCEEE----------EeeCCCcEEEEeCCCceeecccccc
Q 022184          242 ----------------LL----------RKPASVLSISLDGKYLA----------MGSKDGDICVVDVKKMEINHWSKRL  285 (301)
Q Consensus       242 ----------------~~----------~~~v~~~~~s~~~~~l~----------~~~~d~~i~i~~~~~~~~~~~~~~~  285 (301)
                                      ..          ......++++|++..++          +...++.+.+||..+++.+..+.  
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--  315 (373)
T d2madh_         238 QADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--  315 (373)
T ss_pred             EEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec--
Confidence                            00          01122345666665544          34456678999999998888764  


Q ss_pred             ccCccEEEEEEccCCC
Q 022184          286 HLGTSIALVEFCPTQR  301 (301)
Q Consensus       286 ~~~~~v~~~~~spdg~  301 (301)
                      + ...+..++|+|||+
T Consensus       316 ~-~~~~~~~a~spDG~  330 (373)
T d2madh_         316 L-GHDVDAISVAQDGG  330 (373)
T ss_pred             C-CCCeeEEEECCCCC
Confidence            3 56789999999996

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.73  E-value=2.2e-16  Score=131.10  Aligned_cols=146  Identities=14%  Similarity=0.178  Sum_probs=103.1

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec---
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---   83 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---   83 (301)
                      -..+.|.++   ..++..        .++.+.+|+.........   .....+..|...|.++.|||||++|+.++.   
T Consensus        19 ~~~~~W~~d---~~~~~~--------~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~   84 (470)
T d2bgra1          19 LYSLRWISD---HEYLYK--------QENNILVFNAEYGNSSVF---LENSTFDEFGHSINDYSISPDGQFILLEYNYVK   84 (470)
T ss_dssp             CCCCEECSS---SEEEEE--------SSSCEEEEETTTCCEEEE---ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE
T ss_pred             ccCCEeCCC---CEEEEE--------cCCcEEEEECCCCCEEEE---EchhhhhhccCccceeEECCCCCEEEEEECCcc
Confidence            345789977   456654        345566666654432221   123456778889999999999999998753   


Q ss_pred             ------CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC----
Q 022184           84 ------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA----  153 (301)
Q Consensus        84 ------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----  153 (301)
                            ++.+.+||+++++.        .....+...+..+.|||||+.||... ++.+++|+..+++.......+    
T Consensus        85 ~~r~s~~~~~~l~d~~~~~~--------~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~  155 (470)
T d2bgra1          85 QWRHSYTASYDIYDLNKRQL--------ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI  155 (470)
T ss_dssp             CSSSCEEEEEEEEETTTTEE--------CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT
T ss_pred             eeeeccCceEEEEECCCCcc--------cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCc
Confidence                  46788999998764        23334667899999999999999965 778999999888765433211    


Q ss_pred             --------------CccEEEEEecCCCcEEEEEeCC
Q 022184          154 --------------HKSVLDMDFSLDSEFLATTSTD  175 (301)
Q Consensus       154 --------------~~~i~~~~~~~~~~~l~~~~~d  175 (301)
                                    .+....+.|+|||++|++...|
T Consensus       156 ~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         156 IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             ccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence                          1224567899999999987654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=1.3e-16  Score=127.31  Aligned_cols=223  Identities=12%  Similarity=-0.021  Sum_probs=150.4

Q ss_pred             eEEEECCCCCeEEEEe-----cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee----------
Q 022184           67 MTIAVNPSGDDFVCST-----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----------  131 (301)
Q Consensus        67 ~~~~~~~~~~~l~~~~-----~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------  131 (301)
                      .-.+.+||++.+++..     .++.|.+||..+++....+..         +....++|||||++|++.+          
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~---------g~~~~~a~SpDg~~l~v~~~~~~~~~~g~   75 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG---------GFLPNPVVADDGSFIAHASTVFSRIARGE   75 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE---------CSSCEEEECTTSSCEEEEEEEEEETTEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC---------CCCCceEEcCCCCEEEEEeCCCccccccC
Confidence            3345689999987664     345799999988875333221         2334789999999887653          


Q ss_pred             cCCeEEEEeCCCcceecccccCC-------ccEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceEEEEeecCC-----
Q 022184          132 VDGHLRIMHWPSLRIILDEPKAH-------KSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSD-----  197 (301)
Q Consensus       132 ~dg~i~v~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~-----  197 (301)
                      .++.|++||+.+++.+..+..+.       .....++|+|++++++...  .+..+.+|+..+++.+..+..+..     
T Consensus        76 ~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d2bbkh_          76 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP  155 (355)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEee
Confidence            47899999999988765543222       2335689999999887765  456899999999887766543211     


Q ss_pred             -CCeeEEEEccCCCcceEE---------------------------------EEEEeCCcceEEEEEccCceEee--eee
Q 022184          198 -EKIELCRFSKDGTKPFLF---------------------------------CTVQRGDKALLAVYDISTWNKIG--HKR  241 (301)
Q Consensus       198 -~~v~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~i~~~d~~~~~~~~--~~~  241 (301)
                       .....+.+++++..+++.                                 .++..+.++.+.+|++..++...  ...
T Consensus       156 ~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  235 (355)
T d2bbkh_         156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVE  235 (355)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEE
T ss_pred             cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccC
Confidence             112334555555542211                                 03555678899999988765321  111


Q ss_pred             cc----------CCCcEEEEEcCCCCEEEEeeCC----------CcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          242 LL----------RKPASVLSISLDGKYLAMGSKD----------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       242 ~~----------~~~v~~~~~s~~~~~l~~~~~d----------~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      .+          ......+++++++..++....+          +.|.+||..+++.+..+..   ...+.+++|+|||+
T Consensus       236 ~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~  312 (355)
T d2bbkh_         236 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEK  312 (355)
T ss_dssp             SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSS
T ss_pred             CcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC---CCCEEEEEEcCCCC
Confidence            11          1233458899999988876543          3699999999998877643   45688999999985

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=3.2e-13  Score=103.20  Aligned_cols=237  Identities=17%  Similarity=0.155  Sum_probs=141.4

Q ss_pred             eeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC-Cc--EEEEEEcCCccccccccccCCCCCCCC
Q 022184           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GG--CKLFEVYGGATDINLLAKKMPPLQDAG  113 (301)
Q Consensus        37 ~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-~~--i~~w~~~~~~~~~~~~~~~~~~~~~~~  113 (301)
                      .+||..|.++...       ..+..+...+.+.+|||||+.||..... +.  +.+.+..+...  .      ....+..
T Consensus        19 ~~l~i~d~dG~~~-------~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~   83 (269)
T d2hqsa1          19 YELRVSDYDGYNQ-------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--R------QVASFPR   83 (269)
T ss_dssp             EEEEEEETTSCSC-------EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--E------EEECCSS
T ss_pred             EEEEEEcCCCCCc-------EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce--e------EEeeeec
Confidence            3677766655432       1233456778899999999999976543 33  44444443332  1      1112446


Q ss_pred             CeeEEEEeeCCCEEEEeec-CCeEE--EEeCCCcceecccccCCccEEEEEecCCCcEEEE-EeCCCc--EEEEeCCCCc
Q 022184          114 PQKCLSFSVDGSRFAAGGV-DGHLR--IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDGS--ARIWKTEDGV  187 (301)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~-dg~i~--v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~--i~i~d~~~~~  187 (301)
                      ......|+|+|+.++.... ++...  .+....... ..............++++++.++. ...++.  |.+.++..+.
T Consensus        84 ~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~  162 (269)
T d2hqsa1          84 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  162 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             ccccceecCCCCeeeEeeecCCccceeecccccccc-eeeeeccccccccccccccccceecccccCCceEeeeeccccc
Confidence            7788999999999887654 33322  233222222 222233344455667777765444 444554  5555665554


Q ss_pred             eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC--
Q 022184          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD--  265 (301)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--  265 (301)
                      .....  ..........|+|+++.++.  .........+.+.|...+..  .............|||||++|+..+..  
T Consensus       163 ~~~~~--~~~~~~~~~~~spdg~~~~~--~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~  236 (269)
T d2hqsa1         163 PQRIT--WEGSQNQDADVSSDGKFMVM--VSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGM  236 (269)
T ss_dssp             CEECC--CSSSEEEEEEECTTSSEEEE--EEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETT
T ss_pred             ceeee--cccccccccccccccceeEE--EeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCC
Confidence            33222  22345677899999997321  22233334555666655543  233345566788999999998876543  


Q ss_pred             -CcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          266 -GDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       266 -~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                       ..|+++++..+...+..  .. .+.+...+|||
T Consensus       237 ~~~l~~~~~dg~~~~~lt--~~-~g~~~~p~WSP  267 (269)
T d2hqsa1         237 GSVLNLVSTDGRFKARLP--AT-DGQVKFPAWSP  267 (269)
T ss_dssp             EEEEEEEETTSCCEEECC--CS-SSEEEEEEECC
T ss_pred             CcEEEEEECCCCCEEEEe--CC-CCcEEeEEeCC
Confidence             46899999888766543  23 56788999998

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.52  E-value=7e-13  Score=109.65  Aligned_cols=116  Identities=10%  Similarity=-0.012  Sum_probs=72.9

Q ss_pred             ceeEEEeeeecCCCccEEEecCCcccc---CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184            5 GTVTCGSWIKRPENVNLVVLGKSSRAS---SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (301)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (301)
                      ..|.+.+|+||   ++.++.+......   +..+  .+|.++..+...       ..+..|.+.+..+.|||||++||..
T Consensus        62 ~~i~~~~~SpD---g~~i~~~~~~~~~~r~s~~~--~~~l~d~~~~~~-------~~l~~~~~~~~~~~~SPDG~~ia~~  129 (470)
T d2bgra1          62 HSINDYSISPD---GQFILLEYNYVKQWRHSYTA--SYDIYDLNKRQL-------ITEERIPNNTQWVTWSPVGHKLAYV  129 (470)
T ss_dssp             SCCCEEEECTT---SSEEEEEEEEEECSSSCEEE--EEEEEETTTTEE-------CCSSCCCTTEEEEEECSSTTCEEEE
T ss_pred             CccceeEECCC---CCEEEEEECCcceeeeccCc--eEEEEECCCCcc-------cccccCCccccccccccCcceeeEe
Confidence            56889999988   6677765432111   1223  344445544433       2366788899999999999999986


Q ss_pred             ecCCcEEEEEEcCCccccccccccCCC-----------CCCCCCeeEEEEeeCCCEEEEeecC
Q 022184           82 TTNGGCKLFEVYGGATDINLLAKKMPP-----------LQDAGPQKCLSFSVDGSRFAAGGVD  133 (301)
Q Consensus        82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~~~~~d  133 (301)
                       .++.+++|+..++.............           ....+....+.|||||+.|+....|
T Consensus       130 -~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         130 -WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             -ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             -ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence             56779999988775422211110000           0012345668899999999887543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=1.5e-13  Score=110.02  Aligned_cols=228  Identities=10%  Similarity=-0.106  Sum_probs=139.6

Q ss_pred             cCCcceEEEECCCCCeEEE---EecCCc--EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-----
Q 022184           62 SEGDPMTIAVNPSGDDFVC---STTNGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-----  131 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~---~~~d~~--i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----  131 (301)
                      +.++...++..++++....   ...++.  +.+||..+++.......         .....++|+|||+.|++.+     
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~---------~~~~~~a~spDg~~i~~~~~~~~~   88 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG---------AFLSLAVAGHSGSDFALASTSFAR   88 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE---------CTTCEEEECTTSSCEEEEEEEETT
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC---------CCCCcceECCCCCEEEEEcccCcc
Confidence            4555666667888885432   234455  55556666654322211         1123589999999988754     


Q ss_pred             -----cCCeEEEEeCCCcceecccccCC-------ccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCceEEEEeecCCC
Q 022184          132 -----VDGHLRIMHWPSLRIILDEPKAH-------KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDE  198 (301)
Q Consensus       132 -----~dg~i~v~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~  198 (301)
                           .|+.|.+||..+++.+..+..+.       .....++|+|||++|+++. .++.+.+||+.+++....+..+...
T Consensus        89 ~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~  168 (368)
T d1mdah_          89 SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF  168 (368)
T ss_dssp             TTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC
T ss_pred             ccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc
Confidence                 46789999999988766554322       1234689999999988776 5789999999999888877543321


Q ss_pred             ------CeeEEEEccCCCcceEEE-------------------------------EEEeCCcceEEEEEccCceEeeeee
Q 022184          199 ------KIELCRFSKDGTKPFLFC-------------------------------TVQRGDKALLAVYDISTWNKIGHKR  241 (301)
Q Consensus       199 ------~v~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~i~~~d~~~~~~~~~~~  241 (301)
                            ....+.+++||...++..                               .......+.+.+++...........
T Consensus       169 ~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~  248 (368)
T d1mdah_         169 HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAA  248 (368)
T ss_dssp             CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECC
T ss_pred             eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEee
Confidence                  122345555555321100                               0111122334455544333221110


Q ss_pred             --cc----------CCCcEEEEEcCCCCEEEEeeCC---------CcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184          242 --LL----------RKPASVLSISLDGKYLAMGSKD---------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (301)
Q Consensus       242 --~~----------~~~v~~~~~s~~~~~l~~~~~d---------~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  300 (301)
                        ..          ......++++|++..+++...+         ..|.+||..+++.+..+.  + ...+.+++|+|||
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~--~-~~~~~~~a~spDG  325 (368)
T d1mdah_         249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--N-GHDSDAIIAAQDG  325 (368)
T ss_dssp             CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--E-EEEECEEEECCSS
T ss_pred             cccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec--C-CCceeEEEECCCC
Confidence              00          1123457889998877665332         359999999999887764  2 4578999999998


Q ss_pred             C
Q 022184          301 R  301 (301)
Q Consensus       301 ~  301 (301)
                      +
T Consensus       326 ~  326 (368)
T d1mdah_         326 A  326 (368)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.48  E-value=3e-12  Score=102.75  Aligned_cols=196  Identities=10%  Similarity=0.029  Sum_probs=128.0

Q ss_pred             EEEEecCCcEEEEEEcCCccccccccc-----------------------cCCCCCCCCCeeEEEEeeCCCEEEEee-cC
Q 022184           78 FVCSTTNGGCKLFEVYGGATDINLLAK-----------------------KMPPLQDAGPQKCLSFSVDGSRFAAGG-VD  133 (301)
Q Consensus        78 l~~~~~d~~i~~w~~~~~~~~~~~~~~-----------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d  133 (301)
                      +++++.+|.|.+|++.+.+...++...                       ......|.........+|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            456678899999999877653332110                       001111334455666789999987664 57


Q ss_pred             CeEEEEeCCCcceecccc-cCCccEEEEEecCCCcE--EEEEeCCC-----------------cEEEEeCCCCceEEEEe
Q 022184          134 GHLRIMHWPSLRIILDEP-KAHKSVLDMDFSLDSEF--LATTSTDG-----------------SARIWKTEDGVAWTFLT  193 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~--l~~~~~d~-----------------~i~i~d~~~~~~~~~~~  193 (301)
                      +.|.++|+++++....+. .....+..++|+|+++.  ++..+.+.                 .+..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            899999999988765443 23467899999999984  44433321                 23568888888877776


Q ss_pred             ecCCCCeeEEEEccCCCcceEEEE------------------------------------EEeCCcceEEEEEccCceEe
Q 022184          194 RNSDEKIELCRFSKDGTKPFLFCT------------------------------------VQRGDKALLAVYDISTWNKI  237 (301)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~i~~~d~~~~~~~  237 (301)
                      ...  .+..++|+|+|++.|+.+.                                    ...+.++.+.+++....+.+
T Consensus       174 v~~--~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         174 VDG--NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             ESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             cCC--CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            543  4788999999998543220                                    01112344455554444445


Q ss_pred             eeeeccCCCcEEEEEcCCCCEEEE-eeCCCcEEEEeCCCc
Q 022184          238 GHKRLLRKPASVLSISLDGKYLAM-GSKDGDICVVDVKKM  276 (301)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~i~~~~~~  276 (301)
                      ..+...+. ...+.++|||+++++ +..+++|.+||+.+.
T Consensus       252 ~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         252 RYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             EEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             EEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence            55554433 577999999998765 567899999998763

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.46  E-value=1.1e-11  Score=96.18  Aligned_cols=220  Identities=13%  Similarity=0.066  Sum_probs=146.9

Q ss_pred             cceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc
Q 022184           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  144 (301)
                      .+..++++|||+++++...+++|..++......  .+       ......+.+++|++||+++++...++.+..++....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~-------~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IH-------ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EE-------EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--EE-------EcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc
Confidence            477899999999988888888887777543321  11       123367899999999999888888888888876543


Q ss_pred             cee-ccc--ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-------C--CCeeEEEEccCCCcc
Q 022184          145 RII-LDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-------D--EKIELCRFSKDGTKP  212 (301)
Q Consensus       145 ~~~-~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~--~~v~~~~~~~~~~~~  212 (301)
                      ... ..+  .........+++.++++++++-+.++.+..+|...+..........       .  .....+.+.  +..+
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l  177 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFL  177 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEE
T ss_pred             ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCce
Confidence            221 111  1233467899999999999988888999999988776444332211       1  123455554  4432


Q ss_pred             eEEEEEEeCCcceEEEEEccCceEeee--eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee-eccccccccCc
Q 022184          213 FLFCTVQRGDKALLAVYDISTWNKIGH--KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGT  289 (301)
Q Consensus       213 ~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~  289 (301)
                          ..+....+.|..++.........  ..........++++++|+++++...+++|..++...... +... ... -.
T Consensus       178 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~-~~~-~~  251 (302)
T d2p4oa1         178 ----YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQA-EQG-VI  251 (302)
T ss_dssp             ----EEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECG-GGT-CT
T ss_pred             ----eeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEec-CCC-CC
Confidence                35667788899888765433211  112234567799999999888888889999998765432 2222 122 34


Q ss_pred             cEEEEEE---ccCCC
Q 022184          290 SIALVEF---CPTQR  301 (301)
Q Consensus       290 ~v~~~~~---spdg~  301 (301)
                      ..++++|   +||++
T Consensus       252 ~pt~vafg~~~~D~~  266 (302)
T d2p4oa1         252 GSTAVAFGQTEGDCT  266 (302)
T ss_dssp             TEEEEEECCSTTTTT
T ss_pred             CceEEEEcCCCCCCC
Confidence            5889999   66664

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.46  E-value=6.1e-13  Score=106.85  Aligned_cols=226  Identities=8%  Similarity=-0.037  Sum_probs=148.4

Q ss_pred             cCCcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCE--EEEeecCC----
Q 022184           62 SEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR--FAAGGVDG----  134 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg----  134 (301)
                      |.........+|||++|++.. .+++|.++|+++.+....+.      ......+..++|+|+++.  ++..+++.    
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~------iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~  143 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITH------IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQP  143 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE------CTTCCCEEEEEECCSSBCCEEEEEECSCEESS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEe------cCCCCCccceEEeccCCEEEEEeccCCccccc
Confidence            444555666689999987665 57899999999887533221      223467889999999985  33333221    


Q ss_pred             -------------eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC--------------------------
Q 022184          135 -------------HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD--------------------------  175 (301)
Q Consensus       135 -------------~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------------------  175 (301)
                                   .+..+|..+.+...++... +....++++|+|+++++.+.+                          
T Consensus       144 ~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~  222 (441)
T d1qnia2         144 NDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI  222 (441)
T ss_dssp             CSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHH
T ss_pred             CcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccce
Confidence                         2345677766665555433 456789999999988877643                          


Q ss_pred             ---------------CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe---
Q 022184          176 ---------------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI---  237 (301)
Q Consensus       176 ---------------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---  237 (301)
                                     +.+.+++....+.+..+..+  .....+.++|||+++    .+++..+++|.+||+++.+..   
T Consensus       223 ~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg--ksPhGv~vSPDGkyl----~~~~~~~~tvsv~d~~k~~~~~~~  296 (441)
T d1qnia2         223 AAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP--KNPHGLNTSPDGKYF----IANGKLSPTVSVIAIDKLDDLFED  296 (441)
T ss_dssp             HHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB--SSCCCEEECTTSCEE----EEECTTSSBEEEEEGGGHHHHTTT
T ss_pred             EEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC--CCccCceECCCCCEE----EEeCCcCCcEEEEEeehhhhHhhc
Confidence                           23444444444555555543  236789999999973    477889999999998763321   


Q ss_pred             -----eeeecc---CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc----------eeecc----ccccccCccEEEEE
Q 022184          238 -----GHKRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKM----------EINHW----SKRLHLGTSIALVE  295 (301)
Q Consensus       238 -----~~~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~----------~~~~~----~~~~~~~~~v~~~~  295 (301)
                           ..+...   .-.....+|+++|..+.+...|..|..|++...          .....    ...+| ...+.+.+
T Consensus       297 ~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH-~~~~~~~t  375 (441)
T d1qnia2         297 KIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGH-NHASLTES  375 (441)
T ss_dssp             SSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-EEETTTTS
T ss_pred             cCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCC-Cccccccc
Confidence                 111111   112345689999988888899999999997421          11111    12467 66777788


Q ss_pred             EccCCC
Q 022184          296 FCPTQR  301 (301)
Q Consensus       296 ~spdg~  301 (301)
                      |+||||
T Consensus       376 ~~pdGk  381 (441)
T d1qnia2         376 RDADGK  381 (441)
T ss_dssp             TTCCCC
T ss_pred             cCCCCc
Confidence            999986

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=5.9e-11  Score=89.94  Aligned_cols=222  Identities=8%  Similarity=0.019  Sum_probs=143.3

Q ss_pred             CcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      -....++++++|+..++.. ..+.+..++........       ...........++++++++++++....+.+++++-.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~   86 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-------LPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS   86 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-------CCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE-------eccCCccCceEEEEcCCCCEEEeeeeeceeeeeeec
Confidence            4568999999999666543 44666666654433211       111122345778999999887777766777776655


Q ss_pred             CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCC
Q 022184          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (301)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (301)
                      +...+... .......++++.++++++++-..+..+..++........... ........++++++++.     .++...
T Consensus        87 ~~~~~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~~-----~v~~~~  159 (260)
T d1rwia_          87 NNQTVLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNV-----YVTDTD  159 (260)
T ss_dssp             SCCEECCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCEEEECTTCCE-----EEEEGG
T ss_pred             cceeeeee-eeeeecccccccccceeEeeccccccccccccccceeeeeee-cccCCcceeeecCCCCE-----eeeccc
Confidence            44443322 223567899999999988777677778888765544322221 22234678999999884     455567


Q ss_pred             cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      ++.|..+|.............-.....++++++|+++++....+.|..++.......... ... -.....++++++|+
T Consensus       160 ~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~-~~~-~~~P~~i~~d~~g~  236 (260)
T d1rwia_         160 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-FTG-LNTPLAVAVDSDRT  236 (260)
T ss_dssp             GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECC-CCS-CCCEEEEEECTTCC
T ss_pred             cccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEc-cCC-CCCeEEEEEeCCCC
Confidence            788999998765443322233455788999999998888877888998887654322221 222 34578999999874

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=1.6e-10  Score=87.51  Aligned_cols=197  Identities=10%  Similarity=0.016  Sum_probs=128.1

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~  143 (301)
                      .....++++++++.+++....+.+++++-.+...        ...........++++.++++++++-..+..+..++...
T Consensus        57 ~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~--------~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~  128 (260)
T d1rwia_          57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT--------VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS  128 (260)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE--------ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred             cCceEEEEcCCCCEEEeeeeeceeeeeeecccee--------eeeeeeeeecccccccccceeEeecccccccccccccc
Confidence            3467899999998766655555554443222221        11122235678999999998877766677788877655


Q ss_pred             cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc
Q 022184          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (301)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  223 (301)
                      ................++++|+++.+++...++.|..+|....... .+..........+++.++|+.     .++....
T Consensus       129 ~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~l-----~vsd~~~  202 (260)
T d1rwia_         129 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTV-----YVTEHNT  202 (260)
T ss_dssp             SSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCE-----EEEETTT
T ss_pred             ceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee-eeeccccCCCccceeeeeeee-----eeeecCC
Confidence            4332222222345678999999998888888889999998755433 332223335789999999975     4666677


Q ss_pred             ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (301)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~  274 (301)
                      +.|..++.............-.....++++++|.++++-..+++|+.++..
T Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         203 NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            888888876543221112222456899999999877776667777766543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.41  E-value=1.9e-10  Score=89.52  Aligned_cols=252  Identities=10%  Similarity=0.061  Sum_probs=147.7

Q ss_pred             EEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcE
Q 022184            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (301)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i   87 (301)
                      -..+|.++   +++.++.......... .-+|+.+++.+........  .......+....++|.++++.++++.....+
T Consensus        21 EGpa~d~d---G~ly~~~~~~~~~~~~-~g~I~r~d~~~~~~~~~~~--~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i   94 (314)
T d1pjxa_          21 EGPVFDKN---GDFYIVAPEVEVNGKP-AGEILRIDLKTGKKTVICK--PEVNGYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             EEEEECTT---SCEEEEETTCEETTEE-CCEEEEECTTTCCEEEEEC--CEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             eEeEEeCC---CCEEEEECcccccccc-CCEEEEEECCCCcEEEEEC--CccccCCCcceeEEEeCCCCEEEEEECCCeE
Confidence            45678765   4555443222111111 1157888877654321100  0111122346789999999988888777778


Q ss_pred             EEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec---------------CCeEEEEeCCCcceeccccc
Q 022184           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------------DGHLRIMHWPSLRIILDEPK  152 (301)
Q Consensus        88 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~i~v~d~~~~~~~~~~~~  152 (301)
                      ..++.++.........  .. -..-...+.+++.++|++.++-..               .|.|..++.. ++.. .+..
T Consensus        95 ~~~~~~g~~~~~~~~~--~~-g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~-~~~~  169 (314)
T d1pjxa_          95 LVVQTDGTFEEIAKKD--SE-GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDT  169 (314)
T ss_dssp             EEEETTSCEEECCSBC--TT-SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEE
T ss_pred             EEEeCCCcEEEEEecc--cc-ccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Ccee-EeeC
Confidence            8888765433111110  00 000123578999999987776421               2344444432 3322 2222


Q ss_pred             CCccEEEEEecCCCc-----EEEEEeCCCcEEEEeCCCCceEEE---E---eecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184          153 AHKSVLDMDFSLDSE-----FLATTSTDGSARIWKTEDGVAWTF---L---TRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (301)
Q Consensus       153 ~~~~i~~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~---~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (301)
                      .-.....++|+|+++     ++++-+..+.|..||+.....+..   +   ..........+++.++|+.     .++..
T Consensus       170 ~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gnl-----yVa~~  244 (314)
T d1pjxa_         170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL-----LVANW  244 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE-----EEEEE
T ss_pred             CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcE-----EEEEc
Confidence            223456889998764     445556778899998765433321   1   1111223568999999985     34445


Q ss_pred             CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEE-EEeeCCCcEEEEeCCC
Q 022184          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL-AMGSKDGDICVVDVKK  275 (301)
Q Consensus       222 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~~~~~  275 (301)
                      ..+.|.+||.+.++.+..+.......++++|.||++.| ++.+.+|.|..+++..
T Consensus       245 ~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            57889999998877666666656678999999999754 5556678888888753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.41  E-value=3.2e-10  Score=90.18  Aligned_cols=234  Identities=10%  Similarity=0.079  Sum_probs=131.2

Q ss_pred             CceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEE--EEe-cCCcEEEEEEcCCccccccccc-------
Q 022184           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV--CST-TNGGCKLFEVYGGATDINLLAK-------  104 (301)
Q Consensus        35 ~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~--~~~-~d~~i~~w~~~~~~~~~~~~~~-------  104 (301)
                      +.+..|.++.++......      ..........+.++++++.+.  ++. ..+++..+.+............       
T Consensus        60 ~~~~~~~i~~~~~~~~~~------~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  133 (365)
T d1jofa_          60 KKWSSFAVKSPTEIVHEA------SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE  133 (365)
T ss_dssp             TEEEEEEEEETTEEEEEE------EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE
T ss_pred             CcEEEEEEeCCCCeEEEe------eecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceec
Confidence            345667776654332111      011134466788888888443  322 2355655554332111100000       


Q ss_pred             ---cCCCCCCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcceec-----ccccCCccEEEEEecCCCcEEEEEe-C
Q 022184          105 ---KMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIIL-----DEPKAHKSVLDMDFSLDSEFLATTS-T  174 (301)
Q Consensus       105 ---~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~-~  174 (301)
                         .....+....+.++.|+|||+++++++. ...|.+|+......+.     ...........++|+|+++++.+.. .
T Consensus       134 ~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~  213 (365)
T d1jofa_         134 KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             CcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC
Confidence               0000112235789999999999888764 4578888765322111     1112335688999999999775554 6


Q ss_pred             CCcEEEEeCCCCceEEEEe--e---c-------------CCCCeeEEEEccCCCcceEEEEEEe---CCcceEEEEEccC
Q 022184          175 DGSARIWKTEDGVAWTFLT--R---N-------------SDEKIELCRFSKDGTKPFLFCTVQR---GDKALLAVYDIST  233 (301)
Q Consensus       175 d~~i~i~d~~~~~~~~~~~--~---~-------------~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~d~~~  233 (301)
                      +++|.+|++..++......  .   -             .......+.++|+|+++|.  ...+   .....|..|++..
T Consensus       214 ~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv--snr~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA--SSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE--EEEESSTTSCCEEEEEEECT
T ss_pred             CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE--EcccCCCccceEEEEEEecC
Confidence            7899999987654322111  0   0             0112457899999997432  1111   1223477777654


Q ss_pred             ceEee------eeeccCCCcEEEEEcC-CCCEEEEee-CCCcEEEEeCCCc
Q 022184          234 WNKIG------HKRLLRKPASVLSISL-DGKYLAMGS-KDGDICVVDVKKM  276 (301)
Q Consensus       234 ~~~~~------~~~~~~~~v~~~~~s~-~~~~l~~~~-~d~~i~i~~~~~~  276 (301)
                      ...+.      ...........++++| +|++|+++. .++.|.+|+++..
T Consensus       292 ~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         292 CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            32221      1112234567899998 799887775 5689999987654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.40  E-value=1.2e-10  Score=92.77  Aligned_cols=253  Identities=11%  Similarity=0.087  Sum_probs=144.4

Q ss_pred             CceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCC
Q 022184           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (301)
Q Consensus        35 ~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  114 (301)
                      +.|-.+.||.+...+...  ... .......+..|+|+|++++|+++.. +.+..|.+.............     ....
T Consensus        14 ~~i~~~~fd~~~~~l~~~--~~~-~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~-----~~~~   84 (365)
T d1jofa_          14 GAIFTVQFDDEKLTCKLI--KRT-EIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHP-----IGGH   84 (365)
T ss_dssp             CEEEEEEEETTTTEEEEE--EEE-ECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEE-----CCSS
T ss_pred             CCEEEEEEcCCCCeEEEe--eee-eccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeec-----CCCC
Confidence            457778888887665321  111 1223455778999999999988765 458888887543222111111     1233


Q ss_pred             eeEEEEeeCCCEEE--Eee-cCCeEEEEeCCCc-------------ce---ecc-cccCCccEEEEEecCCCcEEEEEeC
Q 022184          115 QKCLSFSVDGSRFA--AGG-VDGHLRIMHWPSL-------------RI---ILD-EPKAHKSVLDMDFSLDSEFLATTST  174 (301)
Q Consensus       115 v~~~~~s~~~~~l~--~~~-~dg~i~v~d~~~~-------------~~---~~~-~~~~~~~i~~~~~~~~~~~l~~~~~  174 (301)
                      ...+.++++++.++  ++. ..+.+..+.+...             ..   ... .......+.++.|+|||+++++++.
T Consensus        85 p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~  164 (365)
T d1jofa_          85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeC
Confidence            45677788887433  322 2345554433110             00   000 0111235789999999998888764


Q ss_pred             -CCcEEEEeCCCCceEE---EEe-ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe--ee---eec--
Q 022184          175 -DGSARIWKTEDGVAWT---FLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI--GH---KRL--  242 (301)
Q Consensus       175 -d~~i~i~d~~~~~~~~---~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~---~~~--  242 (301)
                       ...|.+|+......+.   ... .......+.++|+|+++++|    ++...+++|.+|+....+..  ..   ...  
T Consensus       165 g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~y----v~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~  240 (365)
T d1jofa_         165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLY----ALMEAGNRICEYVIDPATHMPVYTHHSFPLIP  240 (365)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEE----EEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred             CCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEE----EeccCCCEEEEEEecCCCceEEEEeeeecccc
Confidence             4578888765432222   121 12234588999999999743    55677889999998654321  11   100  


Q ss_pred             ------------cCCCcEEEEEcCCCCEEEEeeC------CCcEEEEeCCCceeecc----cc-ccccCccEEEEEEcc-
Q 022184          243 ------------LRKPASVLSISLDGKYLAMGSK------DGDICVVDVKKMEINHW----SK-RLHLGTSIALVEFCP-  298 (301)
Q Consensus       243 ------------~~~~v~~~~~s~~~~~l~~~~~------d~~i~i~~~~~~~~~~~----~~-~~~~~~~v~~~~~sp-  298 (301)
                                  .......+.++|||++|+++..      ...|..|++.....+..    .. ... ......++++| 
T Consensus       241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-G~~p~~i~~~p~  319 (365)
T d1jofa_         241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-GGHSNAVSPCPW  319 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-CTTCCCEEECTT
T ss_pred             ccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcC-CCCccEEEecCC
Confidence                        0112457899999999988743      12377787764321111    10 111 33466788887 


Q ss_pred             CCC
Q 022184          299 TQR  301 (301)
Q Consensus       299 dg~  301 (301)
                      +|+
T Consensus       320 ~G~  322 (365)
T d1jofa_         320 SDE  322 (365)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            664

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.37  E-value=8.9e-10  Score=85.62  Aligned_cols=229  Identities=14%  Similarity=0.054  Sum_probs=141.5

Q ss_pred             cceEEEECCCCCeEEEEec-------CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEE
Q 022184           65 DPMTIAVNPSGDDFVCSTT-------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~-------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (301)
                      ....++|.++|+.+++...       +++|..||.+++........   ...........+.|.++++.++++...+.+.
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---EVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC---EETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC---ccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            3567899999987765432       35677777666543211110   0001113467899999999888887777788


Q ss_pred             EEeCCCcceecccccCC----ccEEEEEecCCCcEEEEEeC---------------CCcEEEEeCCCCceEEEEeecCCC
Q 022184          138 IMHWPSLRIILDEPKAH----KSVLDMDFSLDSEFLATTST---------------DGSARIWKTEDGVAWTFLTRNSDE  198 (301)
Q Consensus       138 v~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~---------------d~~i~i~d~~~~~~~~~~~~~~~~  198 (301)
                      .++..............    .....+++.|+|++.++-..               .|.|..++. .++...... ... 
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~-~~~-  172 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT-AFQ-  172 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE-EES-
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC-Ccc-
Confidence            88876554322211111    13578999999988776432               223444443 233333222 212 


Q ss_pred             CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEee------eeec-cCCCcEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG------HKRL-LRKPASVLSISLDGKYLAMGSKDGDICVV  271 (301)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~------~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~  271 (301)
                      ..+.++|+|++........++....+.|..||+.....+.      .+.. .......+++..+|++.++....+.|.+|
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            3578999998652111124566778899999876432221      1111 11235679999999988887778999999


Q ss_pred             eCCCceeeccccccccCccEEEEEEccCCC
Q 022184          272 DVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      |.+.++....+. .. ...+++++|.||++
T Consensus       253 dp~~g~~~~~i~-~p-~~~~t~~afg~d~~  280 (314)
T d1pjxa_         253 GPDGGQPKMRIR-CP-FEKPSNLHFKPQTK  280 (314)
T ss_dssp             CTTCBSCSEEEE-CS-SSCEEEEEECTTSS
T ss_pred             eCCCCEEEEEEE-CC-CCCEEEEEEeCCCC
Confidence            998887665542 33 45788999999874

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.33  E-value=1.4e-09  Score=84.08  Aligned_cols=228  Identities=10%  Similarity=-0.000  Sum_probs=147.4

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (301)
                      +..+++.||   ++++++.....        +||.+++.+....        +......+.+++|+++|+.+++...++.
T Consensus        30 ~e~iAv~pd---G~l~vt~~~~~--------~I~~i~p~g~~~~--------~~~~~~~~~gla~~~dG~l~v~~~~~~~   90 (302)
T d2p4oa1          30 LENLASAPD---GTIFVTNHEVG--------EIVSITPDGNQQI--------HATVEGKVSGLAFTSNGDLVATGWNADS   90 (302)
T ss_dssp             EEEEEECTT---SCEEEEETTTT--------EEEEECTTCCEEE--------EEECSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             cCCEEECCC---CCEEEEeCCCC--------EEEEEeCCCCEEE--------EEcCCCCcceEEEcCCCCeEEEecCCce
Confidence            556788877   56666644322        6888888765321        2334567999999999998888888888


Q ss_pred             EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc----------ccCCcc
Q 022184           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE----------PKAHKS  156 (301)
Q Consensus        87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~----------~~~~~~  156 (301)
                      +..++.............    .........+.+.++++++++-+.++.+..++...+......          ......
T Consensus        91 ~~~~~~~~~~~~~~~~~~----~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (302)
T d2p4oa1          91 IPVVSLVKSDGTVETLLT----LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  166 (302)
T ss_dssp             CEEEEEECTTSCEEEEEE----CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EEEEEecccccceeeccc----cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccc
Confidence            999988765432222111    123356789999999998888888888888887765432111          111124


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE---EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW---TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      ...+.+.. +..+++.+..+.|..++.......   .....  ......+++.++|+.     .++...++.|..++...
T Consensus       167 ~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~pdgia~d~dG~l-----~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         167 ANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNL-----YGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCE-----EEECBTTCCEEEECTTC
T ss_pred             cccccccC-CceeeecCCCCeEEeccccccccccccccccC--CCCCcceEECCCCCE-----EEEEcCCCcEEEECCCC
Confidence            56666653 345566667788888887654322   11221  223678999999985     45556678899998764


Q ss_pred             ceE-eeeeeccCCCcEEEEE---cCCCCEEEEeeCC
Q 022184          234 WNK-IGHKRLLRKPASVLSI---SLDGKYLAMGSKD  265 (301)
Q Consensus       234 ~~~-~~~~~~~~~~v~~~~~---s~~~~~l~~~~~d  265 (301)
                      ... +......-...++++|   ++|++.|++++..
T Consensus       239 ~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         239 STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            332 2222333356789999   6788888776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=3e-09  Score=80.57  Aligned_cols=223  Identities=12%  Similarity=0.056  Sum_probs=133.9

Q ss_pred             CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (301)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (301)
                      ..++..-+|+||   ++.+|....     ..+...+|.++......       ..+..+.+......|+|+|+.++....
T Consensus        38 ~~~~~sP~wSPD---Gk~IAf~~~-----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~spdg~~i~~~~~  102 (269)
T d2hqsa1          38 PQPLMSPAWSPD---GSKLAYVTF-----ESGRSALVIQTLANGAV-------RQVASFPRHNGAPAFSPDGSKLAFALS  102 (269)
T ss_dssp             SSCEEEEEECTT---SSEEEEEEC-----TTSSCEEEEEETTTCCE-------EEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             CCceeeeEECCC---CCEEEEEEe-----eccCcceeeeecccCce-------eEEeeeecccccceecCCCCeeeEeee
Confidence            345677889988   556665321     12222455555444322       224456778889999999998886654


Q ss_pred             -CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCC--eEEEEeCCCcceecccccCCccEEE
Q 022184           84 -NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDG--HLRIMHWPSLRIILDEPKAHKSVLD  159 (301)
Q Consensus        84 -d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg--~i~v~d~~~~~~~~~~~~~~~~i~~  159 (301)
                       ++...++..........      .............+++++..++..+ .++  .|.+.++..+... ...........
T Consensus       103 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~  175 (269)
T d2hqsa1         103 KTGSLNLYVMDLASGQIR------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD  175 (269)
T ss_dssp             TTSSCEEEEEETTTCCEE------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred             cCCccceeecccccccce------eeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccc
Confidence             34444554443332111      1111233445566777776655443 344  4556666655443 33344556778


Q ss_pred             EEecCCCcEEEEEeCCC-c--EEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184          160 MDFSLDSEFLATTSTDG-S--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~d~-~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  236 (301)
                      ..|+|+++.++..+.++ .  +.+.+...+..  ..... ........|+|||+.+++  ....+....|.++++..+..
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~-~~~~~~p~~SPDG~~i~f--~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSS-TFLDETPSLAPNGTMVIY--SSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCC-SSSCEEEEECTTSSEEEE--EEEETTEEEEEEEETTSCCE
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccc--eEeec-CccccceEECCCCCEEEE--EEcCCCCcEEEEEECCCCCE
Confidence            89999999888776544 3  44455544432  23222 334678899999997432  34455667899999987665


Q ss_pred             eeeeeccCCCcEEEEEcC
Q 022184          237 IGHKRLLRKPASVLSISL  254 (301)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~  254 (301)
                      . .+......+...+|||
T Consensus       251 ~-~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         251 A-RLPATDGQVKFPAWSP  267 (269)
T ss_dssp             E-ECCCSSSEEEEEEECC
T ss_pred             E-EEeCCCCcEEeEEeCC
Confidence            4 4555566778899998

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.29  E-value=4.5e-09  Score=81.79  Aligned_cols=222  Identities=12%  Similarity=0.002  Sum_probs=137.9

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec----CCeEEEE
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----DGHLRIM  139 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~v~  139 (301)
                      ..+..++|.++|+..++-...++|+.|+.++........       ........+++++||+++++...    .+.+...
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-------~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~  112 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  112 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe-------CCCCCeeEEEECCCCCEEEEecCCCccceeEEEE
Confidence            345689999999866666677888888776654321111       12345789999999987776543    2345555


Q ss_pred             eCCCcceeccccc--CCccEEEEEecCCCcEEEEEeCC------CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          140 HWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       140 d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      +............  .......+++.|+|++.++....      +.+..++...+. +..+.... ...+.++|+|+++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~-~~pnGia~s~dg~~  190 (319)
T d2dg1a1         113 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNI-SVANGIALSTDEKV  190 (319)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEE-SSEEEEEECTTSSE
T ss_pred             cCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeecc-ceeeeeeeccccce
Confidence            5554443222211  12357889999999877664321      235555544333 33332222 23688999999986


Q ss_pred             ceEEEEEEeCCcceEEEEEccCce----Eee-e---eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          212 PFLFCTVQRGDKALLAVYDISTWN----KIG-H---KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~d~~~~~----~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      +|    ++....+.|..||+....    ... .   ..........++++++|++.++....+.|.+|+. .++.+..+.
T Consensus       191 ly----vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         191 LW----VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             EE----EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             EE----EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence            32    555667899999875321    110 1   1111123567999999998888888899999996 576665543


Q ss_pred             c-----cccCccEEEEEEccCC
Q 022184          284 R-----LHLGTSIALVEFCPTQ  300 (301)
Q Consensus       284 ~-----~~~~~~v~~~~~spdg  300 (301)
                      .     .+ ...+++++|.|++
T Consensus       266 ~P~~~~~~-~~~~~~~~~~~~~  286 (319)
T d2dg1a1         266 IPGRDEGH-MLRSTHPQFIPGT  286 (319)
T ss_dssp             CTTGGGTC-SCBCCEEEECTTS
T ss_pred             CCCcCCCc-CceeeeEEEeCCC
Confidence            1     12 3357788888764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.26  E-value=4.4e-09  Score=80.23  Aligned_cols=227  Identities=8%  Similarity=0.017  Sum_probs=144.2

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC-EEEEe-ecCCeEEEEeC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAG-GVDGHLRIMHW  141 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~dg~i~v~d~  141 (301)
                      .....++++++|+.+++-..+..|++||.+.. ....+.. .............+++.++.. .+++. +.++.|..++.
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~-~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGE-CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECC-BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCCCC-EEEEecc-cCCCcccccccccccccccccccceeccCCccccccccc
Confidence            35789999999997777667788999986532 2111111 011111112345566665433 34333 34567777775


Q ss_pred             CCcceecccc-cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-cCCCCeeEEEEccCCCcceEEEEEE
Q 022184          142 PSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       142 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                       .++....+. ........+++.+++.++++....+.+.+++. +++.+..+.. ........+++.++++.     .++
T Consensus       101 -~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i-----~v~  173 (279)
T d1q7fa_         101 -YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEI-----FIS  173 (279)
T ss_dssp             -TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEE-----EEE
T ss_pred             -cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeE-----Eee
Confidence             344444332 22346788999999998888777788888886 4555565532 22345788899999875     466


Q ss_pred             eCCcceEEEEEccCceEeeeeec--cCCCcEEEEEcCCCCEEEEeeC-CCcEEEEeCCCceeeccccccccCccEEEEEE
Q 022184          220 RGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (301)
Q Consensus       220 ~~~~~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~  296 (301)
                      ....+.|.+||... +.+..+..  .......++++++|+++++-.. ++.|.+|+. +++.+..+...-.....+.+++
T Consensus       174 d~~~~~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav  251 (279)
T d1q7fa_         174 DNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL  251 (279)
T ss_dssp             EGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred             eccccceeeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEE
Confidence            77788999999754 44444422  2345788999999997776543 457999985 5665554432211345789999


Q ss_pred             ccCCC
Q 022184          297 CPTQR  301 (301)
Q Consensus       297 spdg~  301 (301)
                      .|||+
T Consensus       252 ~~dG~  256 (279)
T d1q7fa_         252 MDDGS  256 (279)
T ss_dssp             ETTTE
T ss_pred             eCCCc
Confidence            99984

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-10  Score=95.50  Aligned_cols=226  Identities=9%  Similarity=-0.033  Sum_probs=138.1

Q ss_pred             EEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee---------cCCeEEEE
Q 022184           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---------VDGHLRIM  139 (301)
Q Consensus        69 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---------~dg~i~v~  139 (301)
                      ..|.+++.++.. ..+|.|.+|++.+++....+...   .+ ....+....||||+++++...         ..+.+.++
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~---~~-~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK---KI-ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT---TT-TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCc---cc-cccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence            468888876654 56788999999877652222111   11 123567788999999988764         35788999


Q ss_pred             eCCCcceecc--cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCC-----------------e
Q 022184          140 HWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK-----------------I  200 (301)
Q Consensus       140 d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----------------v  200 (301)
                      |+.+++....  .......+....|+|||+.+|... ++.|.+.+...+..++.........                 -
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             EccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcccc
Confidence            9988765322  222334566789999999998876 5788898888777665544322211                 2


Q ss_pred             eEEEEccCCCcceEEEEEE-----------eC------------------CcceEEEEEccCceEeeeee------ccCC
Q 022184          201 ELCRFSKDGTKPFLFCTVQ-----------RG------------------DKALLAVYDISTWNKIGHKR------LLRK  245 (301)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~-----------~~------------------~~~~i~~~d~~~~~~~~~~~------~~~~  245 (301)
                      ..+.|||||+++.+..+-.           ..                  ....+.++|+.++.......      ....
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~  255 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccc
Confidence            4677999999854322100           00                  01246667765543221111      1112


Q ss_pred             CcEEEEEcCCCCEEEEeeC-C---CcEEEEeCCCceeeccccccccCcc----EEEEEEccCCC
Q 022184          246 PASVLSISLDGKYLAMGSK-D---GDICVVDVKKMEINHWSKRLHLGTS----IALVEFCPTQR  301 (301)
Q Consensus       246 ~v~~~~~s~~~~~l~~~~~-d---~~i~i~~~~~~~~~~~~~~~~~~~~----v~~~~~spdg~  301 (301)
                      -+..+.|+|++++++.... +   ..|.++|..+++......... ...    -....|+|||+
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~-~~wv~~~~~~p~~~~dg~  318 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES-EAWLHRQNEEPVFSKDGR  318 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-SSCCCCCCCCCEECTTSC
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC-CceEeccCCceeEccCCC
Confidence            3677899999987666532 2   258889999987665442222 221    23456778774

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=3.4e-08  Score=75.17  Aligned_cols=197  Identities=10%  Similarity=0.072  Sum_probs=128.5

Q ss_pred             cceEEEECCCCC-eEEEE-ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184           65 DPMTIAVNPSGD-DFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (301)
Q Consensus        65 ~v~~~~~~~~~~-~l~~~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~  142 (301)
                      ....+++.++.. .+++. +.++.|..++...... ...      ..........+++.++++++++....+.+.+++..
T Consensus        71 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~-~~~------~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~  143 (279)
T d1q7fa_          71 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFV-RKF------GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN  143 (279)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEE-EEE------CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ccccccccccccccceeccCCccccccccccccce-eec------CCCcccccceeccccCCcEEEEeeccceeeEeccC
Confidence            355566655443 44333 2344565555432211 111      01123456789999999988887777888888854


Q ss_pred             Ccceeccc--ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-cCCCCeeEEEEccCCCcceEEEEEE
Q 022184          143 SLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQ  219 (301)
Q Consensus       143 ~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~  219 (301)
                       ++.+..+  ..+......+++.++++.+++....+.|++||. +++.+..+.. ........+++.++|+.     +++
T Consensus       144 -g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i-----~Va  216 (279)
T d1q7fa_         144 -GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEI-----LIA  216 (279)
T ss_dssp             -SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCE-----EEE
T ss_pred             -CceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeE-----EEE
Confidence             4444433  233457788999999998888888899999997 4566666532 12334789999999984     233


Q ss_pred             e-CCcceEEEEEccCceEeeeeecc--CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          220 R-GDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       220 ~-~~~~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      . ..+..|.+|+. +++.+..+...  ......+++.|||.++ +++.+++|++|......
T Consensus       217 d~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         217 DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCCC
T ss_pred             ECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeeec
Confidence            3 34567999985 46665555332  2357899999999755 45678999999987654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.5e-08  Score=82.92  Aligned_cols=238  Identities=13%  Similarity=0.099  Sum_probs=128.3

Q ss_pred             cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCC-----------CCCCCeeEEEEeeCCCEEEEe
Q 022184           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-----------QDAGPQKCLSFSVDGSRFAAG  130 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~  130 (301)
                      ....+....|||||+.||... ++.|.+.+..++..............           ...+.-..+.|||||+.||..
T Consensus       112 ~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         112 SNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             CSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             CccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            345577799999999999875 56688777765443211111000000           001122578899999999876


Q ss_pred             ecC-C---------------------------------eEEEEeCCCcceecccc------cCCccEEEEEecCCCcEEE
Q 022184          131 GVD-G---------------------------------HLRIMHWPSLRIILDEP------KAHKSVLDMDFSLDSEFLA  170 (301)
Q Consensus       131 ~~d-g---------------------------------~i~v~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~  170 (301)
                      ..| .                                 .+.++|+.++.......      .....+..+.|+|+++.++
T Consensus       191 ~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~  270 (465)
T d1xfda1         191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV  270 (465)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred             EecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEE
Confidence            422 2                                 23455554433211111      1112467899999998665


Q ss_pred             EEe-CCC---cEEEEeCCCCceEEEEeecCCCCe----eEEEEccCCCcceEEEEEEeCCcceEEEEEcc------CceE
Q 022184          171 TTS-TDG---SARIWKTEDGVAWTFLTRNSDEKI----ELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS------TWNK  236 (301)
Q Consensus       171 ~~~-~d~---~i~i~d~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~------~~~~  236 (301)
                      ... ++.   .+.++|..+++....+....+..|    ....|+|+|+.+++......+.-+.+..+++.      .++.
T Consensus       271 ~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~  350 (465)
T d1xfda1         271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN  350 (465)
T ss_dssp             EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC
T ss_pred             EEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCce
Confidence            543 222   588899999987766654433322    34689999997433211112222344444432      2222


Q ss_pred             eeeeeccCCCcEEE-EEcCCCCEEEE-eeCC--Cc--EEEEeCCCceeecccc--ccccCccEEEEEEccCCC
Q 022184          237 IGHKRLLRKPASVL-SISLDGKYLAM-GSKD--GD--ICVVDVKKMEINHWSK--RLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       237 ~~~~~~~~~~v~~~-~~s~~~~~l~~-~~~d--~~--i~i~~~~~~~~~~~~~--~~~~~~~v~~~~~spdg~  301 (301)
                      +..+....-.|..+ .|+++++.|+. +..+  +.  ++-.++........+.  ... .....++.|||||+
T Consensus       351 ~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~-~~~~~~~~~S~~~~  422 (465)
T d1xfda1         351 IQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE-NCTYFSASFSHSMD  422 (465)
T ss_dssp             CCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS-SCCCCEEEECTTSS
T ss_pred             eEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCC-CCCEEEEEECCCCC
Confidence            33343334445554 68988877654 3332  22  4444444433222111  122 34567999999985

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.15  E-value=1.3e-07  Score=73.40  Aligned_cols=231  Identities=16%  Similarity=0.153  Sum_probs=134.3

Q ss_pred             eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC--
Q 022184            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--   84 (301)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--   84 (301)
                      +-.++|.++   +++.++-..      .+  +|+.+++.+.....      .+.........++++++|+.+++...+  
T Consensus        42 lEG~~~D~~---G~Ly~~D~~------~g--~I~ri~p~g~~~~~------~~~~~~~~p~gla~~~dG~l~va~~~~~~  104 (319)
T d2dg1a1          42 LEGLNFDRQ---GQLFLLDVF------EG--NIFKINPETKEIKR------PFVSHKANPAAIKIHKDGRLFVCYLGDFK  104 (319)
T ss_dssp             EEEEEECTT---SCEEEEETT------TC--EEEEECTTTCCEEE------EEECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred             cEeCEECCC---CCEEEEECC------CC--EEEEEECCCCeEEE------EEeCCCCCeeEEEECCCCCEEEEecCCCc
Confidence            456778654   444444221      11  67888887654321      122334567899999999877765432  


Q ss_pred             CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec------CCeEEEEeCCCcceecccccCCccEE
Q 022184           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHKSVL  158 (301)
Q Consensus        85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~i~  158 (301)
                      ....++.+...........   ...........+++.++|++.++-..      .+.+..++..... +..+...-....
T Consensus       105 ~~~~i~~~~~~~~~~~~~~---~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pn  180 (319)
T d2dg1a1         105 STGGIFAATENGDNLQDII---EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVAN  180 (319)
T ss_dssp             SCCEEEEECTTSCSCEEEE---CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEE
T ss_pred             cceeEEEEcCCCceeeeec---cCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceee
Confidence            3344555543322111111   11112345788999999986665432      2335555543322 222222223567


Q ss_pred             EEEecCCCcEE-EEEeCCCcEEEEeCCCC-ceEEE----E--eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          159 DMDFSLDSEFL-ATTSTDGSARIWKTEDG-VAWTF----L--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       159 ~~~~~~~~~~l-~~~~~d~~i~i~d~~~~-~~~~~----~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                      .++|+|+++.| ++-+..+.|..|++... .....    .  ..........+++.++|+.     .++....+.|.+||
T Consensus       181 Gia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l-----~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL-----YVAMYGQGRVLVFN  255 (319)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE-----EEEEETTTEEEEEC
T ss_pred             eeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCE-----EEEEcCCCEEEEEC
Confidence            89999999865 45556789999997642 21111    1  1111223568999999985     34555678999999


Q ss_pred             ccCceEeeeeecc------CCCcEEEEEcCCCCEEEEeeC
Q 022184          231 ISTWNKIGHKRLL------RKPASVLSISLDGKYLAMGSK  264 (301)
Q Consensus       231 ~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~  264 (301)
                      . .++.+..+...      ...+++++|.+++..+++...
T Consensus       256 p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         256 K-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             T-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             C-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            6 57776666433      235789999998877766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.13  E-value=1.5e-07  Score=72.07  Aligned_cols=214  Identities=12%  Similarity=0.047  Sum_probs=140.5

Q ss_pred             eEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc
Q 022184           67 MTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (301)
Q Consensus        67 ~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  145 (301)
                      .+..|++....|.-.. ..+.|.-||.++++...         ......+.++++.++|.++++ +.+ .+.++|..+++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~---------~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~   89 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV---------HALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGV   89 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE---------EECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE---------EECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccce
Confidence            4567887555555444 56788888887765421         112346788999999876654 444 58889998876


Q ss_pred             eeccc--cc--CCccEEEEEecCCCcEEEEEeCC----CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE
Q 022184          146 IILDE--PK--AHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (301)
Q Consensus       146 ~~~~~--~~--~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (301)
                      .....  ..  ....+..+.+.|+|++.++....    +.-.+|.+..++........  .....++|+++++.+    .
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~--~~~Ng~~~s~d~~~l----~  163 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI--SIPNSICFSPDGTTG----Y  163 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE--SSEEEEEECTTSCEE----E
T ss_pred             eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc--CCcceeeecCCCceE----E
Confidence            53221  11  11368899999999976665432    34567777777654444322  246889999999973    3


Q ss_pred             EEeCCcceEEEEEccCce------E--eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCc
Q 022184          218 VQRGDKALLAVYDISTWN------K--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (301)
Q Consensus       218 ~~~~~~~~i~~~d~~~~~------~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~  289 (301)
                      ++.+..+.|..|++....      .  .............++++.+|++.++.-..+.|..||. +++.+..+. .. ..
T Consensus       164 ~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~-lP-~~  240 (295)
T d2ghsa1         164 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-VP-GK  240 (295)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-CS-CS
T ss_pred             EeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEec-CC-CC
Confidence            566778889999874311      1  1111223345788999999998877777789999995 577776663 22 45


Q ss_pred             cEEEEEEc-cCC
Q 022184          290 SIALVEFC-PTQ  300 (301)
Q Consensus       290 ~v~~~~~s-pdg  300 (301)
                      .+++++|- ||.
T Consensus       241 ~~T~~~FGG~d~  252 (295)
T d2ghsa1         241 QTTCPAFIGPDA  252 (295)
T ss_dssp             BEEEEEEESTTS
T ss_pred             ceEEEEEeCCCC
Confidence            68999995 443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.94  E-value=4.8e-08  Score=74.10  Aligned_cols=224  Identities=8%  Similarity=0.045  Sum_probs=116.2

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-CC-----cEEEEEEcCCccccccccccCCCCCC
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NG-----GCKLFEVYGGATDINLLAKKMPPLQD  111 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~-----~i~~w~~~~~~~~~~~~~~~~~~~~~  111 (301)
                      .||.++..+...       ..+..+.+.+...+|||||+.||.... ++     .|.+++..+++... +..........
T Consensus        22 dl~~~d~~~g~~-------~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~-lt~~~~~~~~~   93 (281)
T d1k32a2          22 DLWEHDLKSGST-------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-ITYFSGKSTGR   93 (281)
T ss_dssp             EEEEEETTTCCE-------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-CCCCCEEEETT
T ss_pred             cEEEEECCCCCE-------EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE-eeecCCCccCc
Confidence            578877766443       224556777899999999999986542 22     35555555554311 11000000011


Q ss_pred             CCCeeEEEEeeCCCEEEEeecC------CeEEEEeCCCcceecccccCCccEEEEEecCCCc-EEEEEeCCC--------
Q 022184          112 AGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDG--------  176 (301)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~--------  176 (301)
                      ........|+|+|+.|+.....      ..+...+...+......   ....... +.+++. .++....+.        
T Consensus        94 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  169 (281)
T d1k32a2          94 RMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHI-LFADGRRVIGRNTFELPHWKGYRG  169 (281)
T ss_dssp             EECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEE-EEETTEEEEEESCSCCTTSTTCCS
T ss_pred             cccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCcccee-eecCCCeEEEeeccccceeeeecc
Confidence            1245678999999998875432      23445555444432211   1222233 344444 444332221        


Q ss_pred             ---cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEc
Q 022184          177 ---SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (301)
Q Consensus       177 ---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  253 (301)
                         ...+............. . ........++++...    ..........|.++|+.+.+... +... .......|+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~d~~g~~~~~-lt~~-~~~~~~~~S  241 (281)
T d1k32a2         170 GTRGKIWIEVNSGAFKKIVD-M-STHVSSPVIVGHRIY----FITDIDGFGQIYSTDLDGKDLRK-HTSF-TDYYPRHLN  241 (281)
T ss_dssp             TTCCEEEEEEETTEEEEEEC-C-SSCCEEEEEETTEEE----EEECTTSSCEEEEEETTSCSCEE-CCCC-CSSCEEEEE
T ss_pred             CCcceeeeeccccceeeccC-C-ccccceeeeeccccc----eecccccccceEEEeCCCCceEE-eecC-CCcccccCc
Confidence               11122222222222221 1 122445555554321    12223345678888988765443 2222 222345689


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184          254 LDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       254 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  282 (301)
                      |||+.|+... ++.|+++|+.+++.....
T Consensus       242 pDG~~I~f~~-~~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         242 TDGRRILFSK-GGSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             ESSSCEEEEE-TTEEEEECTTTCCEEECC
T ss_pred             CCCCEEEEEe-CCEEEEEECCCCCEEEec
Confidence            9999888754 688999999988766543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.78  E-value=3.5e-07  Score=69.18  Aligned_cols=208  Identities=12%  Similarity=0.027  Sum_probs=110.4

Q ss_pred             EECCC--CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-C-----CeEEEEeC
Q 022184           70 AVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D-----GHLRIMHW  141 (301)
Q Consensus        70 ~~~~~--~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-----g~i~v~d~  141 (301)
                      ..+|+  |++++..+ ++.|.+.|+.+++.. .+       ..+.+.+...+|||||+.|+.... +     ..|.+++.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~L-------t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KI-------VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EE-------ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EE-------ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence            35688  99888764 456888888877641 11       124466788999999999986542 2     24777787


Q ss_pred             CCcceecccccC------CccEEEEEecCCCcEEEEEeCC------CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCC
Q 022184          142 PSLRIILDEPKA------HKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (301)
Q Consensus       142 ~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (301)
                      .+++........      ........|+|+|+.|+.....      ..+...+...+.... .   ....... .+.+++
T Consensus        76 ~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~-~~~~~~  150 (281)
T d1k32a2          76 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-L---NLGPATH-ILFADG  150 (281)
T ss_dssp             TTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-C---CSCSCSE-EEEETT
T ss_pred             cCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE-e---cCCccce-eeecCC
Confidence            777654322111      1245678899999988875432      124455554443322 1   1112222 344444


Q ss_pred             CcceEEEEEEeCC-----------cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeC--CCcEEEEeCCCc
Q 022184          210 TKPFLFCTVQRGD-----------KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK--DGDICVVDVKKM  276 (301)
Q Consensus       210 ~~~~~~~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~i~~~~~~  276 (301)
                      ...    +.....           ............... .............++++.. +.....  ...|.++|+.++
T Consensus       151 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~  224 (281)
T d1k32a2         151 RRV----IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGK  224 (281)
T ss_dssp             EEE----EEESCSCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSC
T ss_pred             CeE----EEeeccccceeeeeccCCcceeeeecccccee-eccCCccccceeeeecccc-ceecccccccceEEEeCCCC
Confidence            431    111111           111222222222222 2223334455666666532 222222  346888898877


Q ss_pred             eeeccccccccCccEEEEEEccCCC
Q 022184          277 EINHWSKRLHLGTSIALVEFCPTQR  301 (301)
Q Consensus       277 ~~~~~~~~~~~~~~v~~~~~spdg~  301 (301)
                      +...... .. ...+  ..|+|||+
T Consensus       225 ~~~~lt~-~~-~~~~--~~~SpDG~  245 (281)
T d1k32a2         225 DLRKHTS-FT-DYYP--RHLNTDGR  245 (281)
T ss_dssp             SCEECCC-CC-SSCE--EEEEESSS
T ss_pred             ceEEeec-CC-Cccc--ccCcCCCC
Confidence            6655432 22 2233  46899985

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.76  E-value=3.6e-06  Score=64.22  Aligned_cols=205  Identities=11%  Similarity=0.016  Sum_probs=127.4

Q ss_pred             eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeE
Q 022184           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC  117 (301)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~  117 (301)
                      +|+.+++.+.....     .   .....+.++++.++|.++++ +.+| +.++|..+++......   .........++.
T Consensus        41 ~I~r~d~~~g~~~~-----~---~~~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~~~~l~~---~~~~~~~~~~nd  107 (295)
T d2ghsa1          41 ELHELHLASGRKTV-----H---ALPFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLTLHAE---LESDLPGNRSND  107 (295)
T ss_dssp             EEEEEETTTTEEEE-----E---ECSSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEEEEEC---SSTTCTTEEEEE
T ss_pred             EEEEEECCCCeEEE-----E---ECCCCcEEEEEecCCCEEEE-EeCc-cEEeecccceeeEEee---eecCCCccccee
Confidence            67777776654321     1   12446788999988876665 4555 8899988776422111   111112235788


Q ss_pred             EEEeeCCCEEEEeec----CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEE-EEeCCCcEEEEeCCCC------
Q 022184          118 LSFSVDGSRFAAGGV----DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDG------  186 (301)
Q Consensus       118 ~~~s~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~------  186 (301)
                      +.+.|+|++.++...    .+.-.+|.+..++... +.........++|+++++.+. +-+..+.|..|++...      
T Consensus       108 ~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~-~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~  186 (295)
T d2ghsa1         108 GRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG  186 (295)
T ss_dssp             EEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS
T ss_pred             eEECCCCCEEEEeccccccccceeEeeecCCcEEE-EeeccCCcceeeecCCCceEEEeecccceeeEeeeccccccccc
Confidence            999999987665432    2344566665665432 222234567899999998654 4456778888887421      


Q ss_pred             ceEEEEe-ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEc-CCCCEEEEe
Q 022184          187 VAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS-LDGKYLAMG  262 (301)
Q Consensus       187 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~  262 (301)
                      +...... .........+++..+|+.     .++.-..+.|..||. .++.+..+......+++++|- ||.+.|++.
T Consensus       187 ~~~~~~~~~~~~g~pdG~~vD~~Gnl-----Wva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         187 KAEVFIDSTGIKGGMDGSVCDAEGHI-----WNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTTSCE-----EEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             ceEEEeccCcccccccceEEcCCCCE-----EeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence            1111111 122335788999999984     233334678999996 577777777766778999995 676655544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=7.6e-05  Score=55.55  Aligned_cols=223  Identities=8%  Similarity=-0.049  Sum_probs=136.6

Q ss_pred             ccCCcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEE
Q 022184           61 ESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRI  138 (301)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v  138 (301)
                      .+...+..++|++..+.|.-+. .++.|+..++.+..... +..      .....+.++++..-+..|..+ ...+.|.+
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~-v~~------~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~  105 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-IIR------QDLGSPEGIALDHLGRTIFWTDSQLDRIEV  105 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-EEC------TTCCCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE-EEE------eccccccEEEEeccCCeEEEeccCCCEEEE
Confidence            3445688899998877777654 45778888876554321 111      122457889998766666544 45679999


Q ss_pred             EeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC-Cc--EEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-GS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (301)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (301)
                      .++...............+..++++|...++...... +.  |.--++....... +....-..+..+++.+.++.+|  
T Consensus       106 ~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~-i~~~~~~~P~glaiD~~~~~lY--  182 (263)
T d1npea_         106 AKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-LAQDNLGLPNGLTFDAFSSQLC--  182 (263)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-EECTTCSCEEEEEEETTTTEEE--
T ss_pred             EecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee-eeeecccccceEEEeecCcEEE--
Confidence            9987554322222223568899999977666544322 23  4444554443333 3222223578999998888643  


Q ss_pred             EEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEe-eCCCcEEEEeCCCceeeccccccccCccEEEE
Q 022184          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALV  294 (301)
Q Consensus       216 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~  294 (301)
                        .+....+.|...|+............ .....+++.  +.+|+.. ...+.|...|..+++....+.... .....++
T Consensus       183 --w~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~-~~~~~gi  256 (263)
T d1npea_         183 --WVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGI  256 (263)
T ss_dssp             --EEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCE
T ss_pred             --EEeCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCC-CCCcceE
Confidence              44456788999999765543333333 334677775  4455555 456889999999988776654333 3445566


Q ss_pred             EEccC
Q 022184          295 EFCPT  299 (301)
Q Consensus       295 ~~spd  299 (301)
                      +..++
T Consensus       257 ~v~~~  261 (263)
T d1npea_         257 TIALS  261 (263)
T ss_dssp             EEECS
T ss_pred             EEeCC
Confidence            65554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=0.00069  Score=50.28  Aligned_cols=210  Identities=7%  Similarity=-0.118  Sum_probs=124.1

Q ss_pred             CCcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCCeEEEEe
Q 022184           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMH  140 (301)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d  140 (301)
                      ...+.+++|++..+.|.-+. ..+.|+-.++............   .......+..+++.+.+..|..+ ...+.|.+.+
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~---~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~  105 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV---ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  105 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE---ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEE---EeCCCCCcceEEEeeccceEEEEecCCCEEEeEe
Confidence            44577899999888777665 3455666665432211110000   00122456778988866666555 4567899999


Q ss_pred             CCCcceecccccCCccEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (301)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (301)
                      +..................++++|...+|....  ..+.|.-.++..... ..+....-..+..+++.+.++.+|    .
T Consensus       106 ~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-~~l~~~~~~~p~gl~iD~~~~~lY----w  180 (266)
T d1ijqa1         106 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLY----W  180 (266)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEE----E
T ss_pred             cCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-ecccccccceeeEEEeeccccEEE----E
Confidence            876554443444445688999999665555443  334566667654443 333323334578999999888743    4


Q ss_pred             EeCCcceEEEEEccCceEeeeeeccC--CCcEEEEEcCCCCEEEEe-eCCCcEEEEeCCCceeeccc
Q 022184          219 QRGDKALLAVYDISTWNKIGHKRLLR--KPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWS  282 (301)
Q Consensus       219 ~~~~~~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~  282 (301)
                      +....+.|...|+.............  .....+++.  +.+|+.. ..++.|...+..+++....+
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence            45667889999987654322222222  335567766  3455555 46678888888887655544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=0.00087  Score=49.61  Aligned_cols=199  Identities=7%  Similarity=-0.122  Sum_probs=119.2

Q ss_pred             CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCCcceecccccCC
Q 022184           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAH  154 (301)
Q Consensus        76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~  154 (301)
                      .+|+.+. .+.|+-.+++............  ...+...+..++|.+..+.|+... .++.|+..+++............
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~--~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~   78 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAF--LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEE--EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             CEEEEeC-CCeEEEEECCCccccccccccc--cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecc
Confidence            3455543 3457778876554321111000  001223467789998777776654 46789888887655433333333


Q ss_pred             ccEEEEEecCCCcEEE-EEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184          155 KSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  233 (301)
                      ..+.++++..-+..|. +-...+.|.+.++........+. .....+..+++.|...++|.  .-.+.....|.--++..
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~p~~l~vdp~~g~ly~--t~~~~~~~~I~r~~~dG  155 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TGLVNPRGIVTDPVRGNLYW--TDWNRDNPKIETSHMDG  155 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEE--EECCSSSCEEEEEETTS
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec-ccccCCcEEEEecccCcEEE--eecCCCCcEEEEecCCC
Confidence            5678899987555554 44566789999987665443333 22345889999998886432  22233344566666655


Q ss_pred             ceEeeeeeccCCCcEEEEEcCCCCEEEEe-eCCCcEEEEeCCCceeec
Q 022184          234 WNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINH  280 (301)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~  280 (301)
                      ..........-.....+++++.++.|+.+ ...+.|...++.......
T Consensus       156 ~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~  203 (263)
T d1npea_         156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK  203 (263)
T ss_dssp             CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE
T ss_pred             CCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEE
Confidence            43332222223456899999887777666 456789999997655443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.07  E-value=0.00083  Score=52.46  Aligned_cols=150  Identities=11%  Similarity=0.082  Sum_probs=92.5

Q ss_pred             CCCEEEEee-cCCeEEEEeCCCcceeccccc-CCccEEEEEecC--CCcEEEEEeCCC------------------cEEE
Q 022184          123 DGSRFAAGG-VDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSL--DSEFLATTSTDG------------------SARI  180 (301)
Q Consensus       123 ~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~d~------------------~i~i  180 (301)
                      ||+++++.. .+.+|.+.|+++.+....+.. ....+..+...+  +-.+++..+.+.                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            788887776 578999999998886442222 223556666654  445777666532                  3678


Q ss_pred             EeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEE----------eCCcceEEEEEc-------------------
Q 022184          181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ----------RGDKALLAVYDI-------------------  231 (301)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~~d~-------------------  231 (301)
                      +|..+.+....+....  ....+.++++|++.|+.+.-+          ...-..+.+++.                   
T Consensus       178 ID~~tm~V~~QV~V~g--~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         178 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EecCCceEEEEeeeCC--ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            8999888877776543  367899999999743211000          011122344443                   


Q ss_pred             ----cCce---EeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 022184          232 ----STWN---KIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKK  275 (301)
Q Consensus       232 ----~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~  275 (301)
                          +...   .+..+.. ......+.++|||+++++++ .+..+.++|++.
T Consensus       256 VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             eecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                2210   1111222 23356789999999988776 578999999964

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.02  E-value=0.00062  Score=53.19  Aligned_cols=106  Identities=15%  Similarity=0.157  Sum_probs=75.1

Q ss_pred             EEEecC---CCcEEEEEe-CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEE----e----------
Q 022184          159 DMDFSL---DSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ----R----------  220 (301)
Q Consensus       159 ~~~~~~---~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~----------  220 (301)
                      .+++..   ||++++... .+.+|.+.|+++.+....+..+....+..+...++++..|+++..-    -          
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455543   788877766 6789999999999987777666666688888887777766533111    0          


Q ss_pred             -CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC
Q 022184          221 -GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD  265 (301)
Q Consensus       221 -~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  265 (301)
                       ...+.+..+|..+.+...+.... .....+.++++|+++++.+.+
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESC
T ss_pred             hhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEecc
Confidence             01145778899988877666543 456789999999999988743

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=0.0013  Score=48.71  Aligned_cols=188  Identities=10%  Similarity=-0.046  Sum_probs=113.8

Q ss_pred             eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCCcc----eecccc
Q 022184           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLR----IILDEP  151 (301)
Q Consensus        77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~----~~~~~~  151 (301)
                      +|+.+.. ..|+-.++++......        ......+..++|++..+.|+... ..+.|+-.++....    ......
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~--------~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~   73 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSL--------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS   73 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEE--------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             EEEEECC-CeEEEEECCCCcceee--------eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe
Confidence            3444433 3477778766543111        12334677899998777777664 45667766664321    111122


Q ss_pred             cCCccEEEEEecCCCcEEEE-EeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184          152 KAHKSVLDMDFSLDSEFLAT-TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (301)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  230 (301)
                      .....+..+++.+.++.|.. -...+.|.+.++........+... ......+++.|...++|.   ...+..+.|.-.+
T Consensus        74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~-~~~P~~l~vd~~~g~ly~---~~~~~~~~I~r~~  149 (266)
T d1ijqa1          74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIVVDPVHGFMYW---TDWGTPAKIKKGG  149 (266)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEEEETTTTEEEE---EECSSSCEEEEEE
T ss_pred             CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCC-CCCcceEEEEcccCeEEE---eccCCCcceeEec
Confidence            22245677888875554444 446678999999876655444433 345789999997776432   3344556788888


Q ss_pred             ccCceEeeeeeccCCCcEEEEEcCCCCEEEEe-eCCCcEEEEeCCCce
Q 022184          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKME  277 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~~  277 (301)
                      +............-.....+++++.++.|+.+ ...+.|...++....
T Consensus       150 ~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            76554433233333557899999987777766 456788888986543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.93  E-value=0.0026  Score=49.69  Aligned_cols=162  Identities=12%  Similarity=0.050  Sum_probs=89.9

Q ss_pred             ccEEEecCCcccc--C-CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC-CcEEEEEEcC
Q 022184           19 VNLVVLGKSSRAS--S-SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GGCKLFEVYG   94 (301)
Q Consensus        19 ~~~~~~g~~~~~~--~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-~~i~~w~~~~   94 (301)
                      ++++++|+.....  + ......++.||+....+...+..   ...|.......++.++|+.++.++.+ ..+.+||..+
T Consensus        31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~---~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT---VTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE---ECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC---CCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            5677776642211  1 11222455677766555322111   12233334567788999998888665 5899999877


Q ss_pred             CccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC------CeEEEEeCCCcceec--ccc------c-CC-----
Q 022184           95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIIL--DEP------K-AH-----  154 (301)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~v~d~~~~~~~~--~~~------~-~~-----  154 (301)
                      ..-..      ...+.....-..++..+||++++.++.+      ..+.+||..+.+-..  ...      . +.     
T Consensus       108 ~~w~~------~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~  181 (387)
T d1k3ia3         108 DSWIP------GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  181 (387)
T ss_dssp             TEEEE------CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             Ccccc------cccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeec
Confidence            65421      2222222333456777899999988743      468899987654311  000      0 00     


Q ss_pred             ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 022184          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  189 (301)
                      ..-..+..-++++.+..+...+.+.+++..+....
T Consensus       182 ~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         182 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             cceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence            00111223346777777777777777777766543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.69  E-value=0.0048  Score=45.63  Aligned_cols=202  Identities=11%  Similarity=0.087  Sum_probs=123.0

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc-
Q 022184           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-  144 (301)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-  144 (301)
                      ..+.-.+|..+.||.-+ ..++++||+++.+....        ..-..+|.--.|-.+ +.|+..+ +..|+-|+++.. 
T Consensus        65 AdsAIMhP~~~IiALra-g~~LQiFnletK~klks--------~~~~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s  133 (327)
T d1utca2          65 ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA--------HTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGES  133 (327)
T ss_dssp             CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE--------EECSSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSC
T ss_pred             hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhce--------EEcCCCcEEEEecCC-CEEEEEc-CCceEEEcccCCC
Confidence            34566788888777655 56799999988765222        223356666677544 4566665 567999999543 


Q ss_pred             ceecccccCC----ccEEEEEecCCCcEEEEEe---C----CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc--
Q 022184          145 RIILDEPKAH----KSVLDMDFSLDSEFLATTS---T----DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK--  211 (301)
Q Consensus       145 ~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~---~----d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--  211 (301)
                      ++.+.+..|.    ..|-.-..+++.++++..+   .    .|.+.+|..+.+. .+.+.+|.   ..-..+--+|..  
T Consensus       134 ~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGha---a~F~~~~~~g~~~~  209 (327)
T d1utca2         134 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA---ASFAQFKMEGNAEE  209 (327)
T ss_dssp             CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSE---EEEEEECCTTCSSC
T ss_pred             CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Ccccccee---eeeEEEEcCCCCCC
Confidence            3333333333    3677777888999876543   2    3568899876543 34444331   122222222211  


Q ss_pred             ceEEEEEE-eCCcceEEEEEccCce---E------eeeeec---cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184          212 PFLFCTVQ-RGDKALLAVYDISTWN---K------IGHKRL---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (301)
Q Consensus       212 ~~~~~~~~-~~~~~~i~~~d~~~~~---~------~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~  278 (301)
                      --+++++. +...+++++.++....   .      ...+..   ..+-..++..|+.-..++.-+.-|.|++||+.++.+
T Consensus       210 ~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~  289 (327)
T d1utca2         210 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC  289 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred             ceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccE
Confidence            11223333 3445789999986521   1      111111   123456788888888999999999999999999988


Q ss_pred             eccc
Q 022184          279 NHWS  282 (301)
Q Consensus       279 ~~~~  282 (301)
                      +..-
T Consensus       290 i~~n  293 (327)
T d1utca2         290 IYMN  293 (327)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7754

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.68  E-value=0.0097  Score=49.14  Aligned_cols=166  Identities=10%  Similarity=0.026  Sum_probs=96.3

Q ss_pred             EEEEeeCCCEEEEeec----------------CCeEEEEeCCCcceecccccCCcc---------EEEEEecCCCc---E
Q 022184          117 CLSFSVDGSRFAAGGV----------------DGHLRIMHWPSLRIILDEPKAHKS---------VLDMDFSLDSE---F  168 (301)
Q Consensus       117 ~~~~s~~~~~l~~~~~----------------dg~i~v~d~~~~~~~~~~~~~~~~---------i~~~~~~~~~~---~  168 (301)
                      ..++.++...++.+..                ...+.-.|.++++.+..++..+..         ........+++   .
T Consensus       239 ~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~  318 (571)
T d2ad6a1         239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL  318 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred             ccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccc
Confidence            3456666666655433                246777888999876655432221         11222223444   4


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEeecCC------------CC--------------------------eeEEEEccCCC
Q 022184          169 LATTSTDGSARIWKTEDGVAWTFLTRNSD------------EK--------------------------IELCRFSKDGT  210 (301)
Q Consensus       169 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------~~--------------------------v~~~~~~~~~~  210 (301)
                      ++..+.+|.+.++|..+++.+........            .+                          -...+++|+..
T Consensus       319 v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~  398 (571)
T d2ad6a1         319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR  398 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred             eeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCc
Confidence            67788999999999999988754321100            00                          01245666665


Q ss_pred             cceEEEE--------------------------E------EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCE
Q 022184          211 KPFLFCT--------------------------V------QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY  258 (301)
Q Consensus       211 ~~~~~~~--------------------------~------~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  258 (301)
                      .+|+-..                          .      .....|.|.-+|+.+++.+-........... .++-.+.+
T Consensus       399 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g-~l~Taggl  477 (571)
T d2ad6a1         399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGG-TLYTKGGL  477 (571)
T ss_dssp             EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTE
T ss_pred             eEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcc-eeEecCCE
Confidence            4332110                          0      0011257888888888876444322211111 12224567


Q ss_pred             EEEeeCCCcEEEEeCCCceeecccc
Q 022184          259 LAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       259 l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      +++++.||.++.+|.++|+.+-.+.
T Consensus       478 Vf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         478 VWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCcEEEEEE
Confidence            8889999999999999999987664

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.26  E-value=0.019  Score=42.45  Aligned_cols=217  Identities=10%  Similarity=0.048  Sum_probs=123.7

Q ss_pred             CceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCC
Q 022184           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (301)
Q Consensus        35 ~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  114 (301)
                      ..+++++++...+-.      ...+   ..+|.--.|-.+ +.|+..+ +..|+-|++++...+.+...+. ..+ ....
T Consensus        83 ~~LQiFnletK~klk------s~~~---~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~-~~L-~~~Q  149 (327)
T d1utca2          83 KTLQIFNIEMKSKMK------AHTM---TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH-SSL-AGCQ  149 (327)
T ss_dssp             TEEEEEETTTTEEEE------EEEC---SSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECC-GGG-TTCE
T ss_pred             CeEEEEehhHhhhhc------eEEc---CCCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhc-ccc-cCce
Confidence            356777776544211      1112   456777888654 4555553 4559999997655544444332 222 2356


Q ss_pred             eeEEEEeeCCCEEEEee---c----CCeEEEEeCCCcceecccccCCccEEEEEecCC--C-cEEEEEe---CCCcEEEE
Q 022184          115 QKCLSFSVDGSRFAAGG---V----DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD--S-EFLATTS---TDGSARIW  181 (301)
Q Consensus       115 v~~~~~s~~~~~l~~~~---~----dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~l~~~~---~d~~i~i~  181 (301)
                      |..-..+++.++++..+   .    .|.+.+|..+.... +.+++|......+.+.-+  . +.|+.+.   ..+++++.
T Consensus       150 IInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIi  228 (327)
T d1utca2         150 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII  228 (327)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEE
Confidence            66777788888876543   2    37788998865543 455566544444433211  1 2333332   23567888


Q ss_pred             eCCCCc---e-----EEEEeecC---CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEE
Q 022184          182 KTEDGV---A-----WTFLTRNS---DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL  250 (301)
Q Consensus       182 d~~~~~---~-----~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~  250 (301)
                      ++....   .     ...+..+.   ..-.-++..++....     +..-+.-|.|++||++++.++..-+.....|...
T Consensus       229 Eig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygi-----iyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~  303 (327)
T d1utca2         229 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV-----VFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  303 (327)
T ss_dssp             ECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCE-----EEEEecCcEEEEEEcccccEEEEeecCCCceEEe
Confidence            775421   1     11111111   122445666665554     3444577899999999999987777777777765


Q ss_pred             EEcCCCCEEEEeeCCCcEEE
Q 022184          251 SISLDGKYLAMGSKDGDICV  270 (301)
Q Consensus       251 ~~s~~~~~l~~~~~d~~i~i  270 (301)
                      +-+.+..-+++...+|.|.-
T Consensus       304 a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         304 APHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEETTTTEEEEEETTSEEEE
T ss_pred             ccCCCCceEEEECCCCeEEE
Confidence            55555555555566776543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.26  E-value=0.037  Score=45.78  Aligned_cols=59  Identities=17%  Similarity=0.076  Sum_probs=41.1

Q ss_pred             ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      |.|.-||+.+++.+-.... ..+...-.++-.|.+++.|+.||.++.+|.++|+.+-.+.
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            5788888888877543322 2222222233356788889999999999999999987654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.03  E-value=0.016  Score=44.91  Aligned_cols=153  Identities=9%  Similarity=-0.030  Sum_probs=89.7

Q ss_pred             EeeCCCEEEEeecC-----C------eEEEEeCCCcceecc--c-ccCCccEEEEEecCCCcEEEEEeCC-CcEEEEeCC
Q 022184          120 FSVDGSRFAAGGVD-----G------HLRIMHWPSLRIILD--E-PKAHKSVLDMDFSLDSEFLATTSTD-GSARIWKTE  184 (301)
Q Consensus       120 ~s~~~~~l~~~~~d-----g------~i~v~d~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~i~d~~  184 (301)
                      ...+|+.++.|+.+     +      .+.+||..+++....  . ..+.......++.+++++++.|+.+ ..+.+||..
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            33467777776632     1      367899987754321  1 1222233456788999999988755 579999998


Q ss_pred             CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc------ceEEEEEccCceEee--eeecc------------C
Q 022184          185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK------ALLAVYDISTWNKIG--HKRLL------------R  244 (301)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~~~--~~~~~------------~  244 (301)
                      +......-.......-...+..+||+.     ++.++..      ..+.+||..+.+-..  .....            .
T Consensus       107 ~~~w~~~~~~~~~r~~~~~~~~~dG~v-----~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~  181 (387)
T d1k3ia3         107 SDSWIPGPDMQVARGYQSSATMSDGRV-----FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  181 (387)
T ss_dssp             GTEEEECCCCSSCCSSCEEEECTTSCE-----EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             cCcccccccccccccccceeeecCCce-----eeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeec
Confidence            876543322222223456777888885     3444321      468899988754221  10000            0


Q ss_pred             CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184          245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (301)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~  277 (301)
                      ..-..+..-++|+.+..++.++.+.+++..+..
T Consensus       182 ~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         182 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             cceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence            011112334577778888777778888877654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.02  E-value=0.01  Score=48.96  Aligned_cols=149  Identities=9%  Similarity=0.009  Sum_probs=88.8

Q ss_pred             CeEEEEeCCCcceecccccCCcc---------EEEEEecCCCc---EEEEEeCCCcEEEEeCCCCceEEEEeecCCCC--
Q 022184          134 GHLRIMHWPSLRIILDEPKAHKS---------VLDMDFSLDSE---FLATTSTDGSARIWKTEDGVAWTFLTRNSDEK--  199 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~~~~---------i~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--  199 (301)
                      ..|.-.|+++++....++..+..         ..-+....+++   .++.+..+|.+.++|..+++.+..........  
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            45677788888875444322211         11122223443   56778899999999999999876543211000  


Q ss_pred             ---------------------------------eeEEEEccCCCcceEEEEE----------------------------
Q 022184          200 ---------------------------------IELCRFSKDGTKPFLFCTV----------------------------  218 (301)
Q Consensus       200 ---------------------------------v~~~~~~~~~~~~~~~~~~----------------------------  218 (301)
                                                       -...+++|+...+++-..-                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                             1134566666543321100                            


Q ss_pred             ---EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          219 ---QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       219 ---~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                         .....+.|.-+|+.+++.+-..... .+...-.++-.+.++++|+.||.++.+|.++|+.+-.+.
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence               0011367888999999877544332 222222233356688889999999999999999887654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.91  E-value=0.018  Score=47.50  Aligned_cols=60  Identities=13%  Similarity=0.070  Sum_probs=43.3

Q ss_pred             cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      -|.|.-||+.+++.+-...... +...=..+-.+.++++|+.||.++.||.++|+.+-.+.
T Consensus       456 ~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         456 FGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            3679999999998875544322 21111233467788899999999999999999886654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.079  Score=40.83  Aligned_cols=142  Identities=8%  Similarity=-0.004  Sum_probs=83.1

Q ss_pred             CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccc--cccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC
Q 022184           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL--AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (301)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~  141 (301)
                      ....-++.++...++++|+.++ +.|..++.-+......  ............|..++|+.+  .++.. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            4466788888777888888776 7777754321100000  000000011235888999644  45554 4566887877


Q ss_pred             CCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee----cCCCCeeEEEEccCCCc
Q 022184          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR----NSDEKIELCRFSKDGTK  211 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~  211 (301)
                      .+-...........++..+.++|.  .++....++.+.++++..++.......    .-...+.+++|++.|..
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEE
T ss_pred             eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEE
Confidence            654333333333457888888875  466667789999999988764332210    11234778888887776

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.72  E-value=0.092  Score=41.39  Aligned_cols=206  Identities=12%  Similarity=-0.058  Sum_probs=102.6

Q ss_pred             eEEEECCCCCeEEEEecC----------------CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe
Q 022184           67 MTIAVNPSGDDFVCSTTN----------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG  130 (301)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d----------------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  130 (301)
                      ..++|.+|++.|+....+                ..+..+.+.+..........   .......+..+..++++++++..
T Consensus       174 ~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~---e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE---FPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC---CTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccc---cccCCceEEeeeccCCcceeeEE
Confidence            578999999988765432                24666666555432222211   11122345667788899987654


Q ss_pred             ec---CCe--EEEEeCCCccee--------cccccCCccEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCce--EEEE
Q 022184          131 GV---DGH--LRIMHWPSLRII--------LDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVA--WTFL  192 (301)
Q Consensus       131 ~~---dg~--i~v~d~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~--~~~~  192 (301)
                      ..   +..  +.+.|+......        ...........-+ -+.++.+++....   ++.|...++.....  ...+
T Consensus       251 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~v  329 (430)
T d1qfma1         251 IREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL  329 (430)
T ss_dssp             EECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEE
T ss_pred             eeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEE
Confidence            32   333  444454332110        0111111222222 2223334333332   34566666654322  2233


Q ss_pred             eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeC----CCcE
Q 022184          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK----DGDI  268 (301)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d~~i  268 (301)
                      ..++...+..-.+...+.++  +....-..-..|.++++.+++...........+..+...++...+...-.    =.++
T Consensus       330 i~~~~~~~~~~~~~~~~~~l--vl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~  407 (430)
T d1qfma1         330 VPEHEKDVLEWVACVRSNFL--VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGII  407 (430)
T ss_dssp             ECCCSSCEEEEEEEETTTEE--EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred             ecccCcceeeeEEEEECCEE--EEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeE
Confidence            32333334433444444442  22233445567999999887765444433445555555555554443322    2679


Q ss_pred             EEEeCCCcee
Q 022184          269 CVVDVKKMEI  278 (301)
Q Consensus       269 ~i~~~~~~~~  278 (301)
                      .-+|+.+++.
T Consensus       408 y~~Dl~t~~~  417 (430)
T d1qfma1         408 YHCDLTKEEL  417 (430)
T ss_dssp             EEEETTSSSC
T ss_pred             EEEECCCCCc
Confidence            9999988764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.71  E-value=0.014  Score=48.11  Aligned_cols=77  Identities=13%  Similarity=0.097  Sum_probs=51.5

Q ss_pred             CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      |.+.-+|+.+++.+.+..... +...-.+.-.+.+++.++.||.++.+|.++|+.+-++.......-.-+.+..+|+.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            457777888887765543221 11111122245677789999999999999999998887655433344677778875

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.69  E-value=0.079  Score=40.31  Aligned_cols=192  Identities=12%  Similarity=0.013  Sum_probs=104.4

Q ss_pred             cceEEEECCCCCeEEEEec------------CCcEEEEEEcCCccccccccccCC-CCCCCCCeeEEEE--eeCCCE-EE
Q 022184           65 DPMTIAVNPSGDDFVCSTT------------NGGCKLFEVYGGATDINLLAKKMP-PLQDAGPQKCLSF--SVDGSR-FA  128 (301)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~------------d~~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~--s~~~~~-l~  128 (301)
                      ...+|+..|+|..+++++.            .|.|.++|+++............. .....-....+.+  .++|+. |+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3456888899887776542            388999998765442222111000 0000012244444  335553 44


Q ss_pred             Eee---cCCeEEEEeCCCcceec----cccc-CCccEEEEEecCCCcEEEEEeC---------------CCcEEEEeCCC
Q 022184          129 AGG---VDGHLRIMHWPSLRIIL----DEPK-AHKSVLDMDFSLDSEFLATTST---------------DGSARIWKTED  185 (301)
Q Consensus       129 ~~~---~dg~i~v~d~~~~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~~---------------d~~i~i~d~~~  185 (301)
                      +..   ...+|.+|++.......    .+.. ......++++..++.+++|-..               -+...+|....
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            432   35678888875433211    1111 1135788999999988887321               12334444444


Q ss_pred             CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee--eeccCCCcEEEEEcCC-CCEEEEe
Q 022184          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH--KRLLRKPASVLSISLD-GKYLAMG  262 (301)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~s~~-~~~l~~~  262 (301)
                      ++....... . ...+.++++|+++.+    .++....++|+.|++.....+..  ........-.+.+.++ |.+.+++
T Consensus       196 ~~~~~~~~~-l-~~pNGI~~s~d~~~l----yVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         196 NDVRVVAEG-F-DFANGINISPDGKYV----YIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SCEEEEEEE-E-SSEEEEEECTTSSEE----EEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CceEEEcCC-C-CccceeEECCCCCEE----EEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            443322222 2 247899999999974    35566778899999875432221  1123445677888764 4444443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.66  E-value=0.018  Score=47.47  Aligned_cols=76  Identities=8%  Similarity=0.024  Sum_probs=48.7

Q ss_pred             eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      .+.-||+.+++.+.+..... +...-...-.+.++++++.|+.++.+|.++|+.+-++.......-.-+.|..+|+.
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            45666666666655443221 11111122256778889999999999999999998887654433334667778875

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.66  E-value=0.083  Score=40.17  Aligned_cols=175  Identities=13%  Similarity=0.087  Sum_probs=94.0

Q ss_pred             eEEEEeeCCCEEEEee------------cCCeEEEEeCCCcceec-c--cccCC-----ccEEEEEe--cCCCc-EEEEE
Q 022184          116 KCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIIL-D--EPKAH-----KSVLDMDF--SLDSE-FLATT  172 (301)
Q Consensus       116 ~~~~~s~~~~~l~~~~------------~dg~i~v~d~~~~~~~~-~--~~~~~-----~~i~~~~~--~~~~~-~l~~~  172 (301)
                      -.+...|+|..+++++            ..|.|.++|+.+.+... .  +....     -....+..  .++++ +|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            3566677776655543            14889999987653321 1  11110     12334443  45665 34444


Q ss_pred             e---CCCcEEEEeCCCCce-E---EEEeecCCCCeeEEEEccCCCcceEEEEEEe-----------------CCcceEEE
Q 022184          173 S---TDGSARIWKTEDGVA-W---TFLTRNSDEKIELCRFSKDGTKPFLFCTVQR-----------------GDKALLAV  228 (301)
Q Consensus       173 ~---~d~~i~i~d~~~~~~-~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~~  228 (301)
                      .   ...+|.+|++..... +   ..+........+.++...++..     .++.                 ...+.+.-
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~f-----y~Tnd~~~~~~~~~~~e~~~~~~~g~v~~  192 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-----YATNDHYFIDPYLKSWEMHLGLAWSFVTY  192 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-----EEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCE-----EEecCccCcChhhhhhhHhhcCCceeEEE
Confidence            3   456788888754332 2   2223333345788888888874     2331                 12244555


Q ss_pred             EEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      ||....+.+   ...-...+.++++||+++|+++. ..++|++|++.....+......+.....-.+.+.+
T Consensus       193 ~~~~~~~~~---~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~  260 (340)
T d1v04a_         193 YSPNDVRVV---AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDP  260 (340)
T ss_dssp             ECSSCEEEE---EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECT
T ss_pred             EcCCceEEE---cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEec
Confidence            555433222   22234578999999998877764 56789999987543222211111134455565543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.61  E-value=0.019  Score=47.50  Aligned_cols=77  Identities=16%  Similarity=0.197  Sum_probs=54.3

Q ss_pred             CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      |.|.-+|+.+++.+.+...+. ++..-..+..+.++++++.|+.++.+|.++|+.+-++.......-.-+.|..+|+.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            567778888888766654332 22211123356677889999999999999999998887655444445778888875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.49  E-value=0.11  Score=42.55  Aligned_cols=77  Identities=12%  Similarity=0.080  Sum_probs=51.5

Q ss_pred             CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (301)
Q Consensus       134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (301)
                      |.|.-+|+.+++.+.+........... ..-.+.++++++.|+.++.+|.++|+.+-++.......-.-+.|..+|+.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGT-LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcce-eEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            467777888877765543222111111 11135577789999999999999999998887665444445777788876

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.33  E-value=0.071  Score=44.05  Aligned_cols=155  Identities=8%  Similarity=-0.002  Sum_probs=91.7

Q ss_pred             CCEEEEeecCCeEEEEeCCCcceecccccCCc-cEEEEEecC--CCcEEEEEeC------CCcEEEEeCCCCceEEEEee
Q 022184          124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSL--DSEFLATTST------DGSARIWKTEDGVAWTFLTR  194 (301)
Q Consensus       124 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~  194 (301)
                      +.+++.++.|+.|.-.|.++++.+..+..... .-..+.-.|  -+..++.+..      .|.|+-+|+++|+.+-.+..
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            34688889999999999999998766532211 000111112  1334444432      48899999999999877642


Q ss_pred             cCC------------------------------------C-CeeEEEEccCCCcceEEEEEEeCC--------------c
Q 022184          195 NSD------------------------------------E-KIELCRFSKDGTKPFLFCTVQRGD--------------K  223 (301)
Q Consensus       195 ~~~------------------------------------~-~v~~~~~~~~~~~~~~~~~~~~~~--------------~  223 (301)
                      ...                                    . .-..+++.+....+|   +.++..              .
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy---~~tg~~~p~~~~~r~g~n~ys  277 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY---FGTGNPAPWNETMRPGDNKWT  277 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE---EECCCCSCSCGGGSCSCCTTS
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeee---ccccccccccccccccccccc
Confidence            110                                    0 012334555544422   122211              3


Q ss_pred             ceEEEEEccCceEeeeeeccCC---------CcEEEEE-cCCC---CEEEEeeCCCcEEEEeCCCceeecc
Q 022184          224 ALLAVYDISTWNKIGHKRLLRK---------PASVLSI-SLDG---KYLAMGSKDGDICVVDVKKMEINHW  281 (301)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~---------~v~~~~~-s~~~---~~l~~~~~d~~i~i~~~~~~~~~~~  281 (301)
                      ..|.-.|.++++.+-.++....         ...-+.. ..+|   +.++....+|.+.++|..+++++..
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence            5688889999988755543221         1111221 2344   4678889999999999999987753

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.19  E-value=0.2  Score=39.37  Aligned_cols=222  Identities=13%  Similarity=0.065  Sum_probs=113.5

Q ss_pred             cCCcceEEEECCCCCeEEEEe-cC----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---
Q 022184           62 SEGDPMTIAVNPSGDDFVCST-TN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---  133 (301)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~-~d----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---  133 (301)
                      +.-.+...+++|++++++.+- .+    -.++++|+.+++........        .....+.|++|++.|+....+   
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--------~~~~~~~W~~D~~~~~Y~~~~~~~  194 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--------VKFSCMAWTHDGKGMFYNAYPQQD  194 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--------ECSCCEEECTTSSEEEEEECCCCS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--------ccccceEEcCCCCEEEEEEecccc
Confidence            333456678899999988542 23    37999999988753222111        112468999999988764322   


Q ss_pred             -------------CeEEEEeCCCccee--cccccCC--ccEEEEEecCCCcEEEEEeC---CCc--EEEEeCCCCce---
Q 022184          134 -------------GHLRIMHWPSLRII--LDEPKAH--KSVLDMDFSLDSEFLATTST---DGS--ARIWKTEDGVA---  188 (301)
Q Consensus       134 -------------g~i~v~d~~~~~~~--~~~~~~~--~~i~~~~~~~~~~~l~~~~~---d~~--i~i~d~~~~~~---  188 (301)
                                   ..|..+.+.+....  ..+....  ..+..+..++++++++....   +..  +.+.|+.....   
T Consensus       195 ~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~  274 (430)
T d1qfma1         195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (430)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             CcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence                         25777777654321  1222222  24566778899998764332   333  34445433211   


Q ss_pred             ----EEEEeecCCCCeeEEEEccCCCcceEEEEEE--eCCcceEEEEEccCceEe--ee-eeccCCCcEEEEEcCCCCEE
Q 022184          189 ----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ--RGDKALLAVYDISTWNKI--GH-KRLLRKPASVLSISLDGKYL  259 (301)
Q Consensus       189 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~--~~-~~~~~~~v~~~~~s~~~~~l  259 (301)
                          ...+.........-+ - .++..++   +.+  ...++.|...++......  .. +..+...+..-.++..+.+|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~---~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~l  349 (430)
T d1qfma1         275 GILKWVKLIDNFEGEYDYV-T-NEGTVFT---FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL  349 (430)
T ss_dssp             SSCCCEEEECSSSSCEEEE-E-EETTEEE---EEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred             cccceeEeecccccceEEE-e-cCCceee---cccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEE
Confidence                111211112112221 1 2333211   122  223467777777654321  12 22233444443444445566


Q ss_pred             EEee-CCC--cEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184          260 AMGS-KDG--DICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (301)
Q Consensus       260 ~~~~-~d~--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp  298 (301)
                      +... .++  .|++++..+++...... .. .+.|..+...+
T Consensus       350 vl~~~~~~~~~l~v~~~~~~~~~~~~~-~~-~~sv~~~~~~~  389 (430)
T d1qfma1         350 VLCYLHDVKNTLQLHDLATGALLKIFP-LE-VGSVVGYSGQK  389 (430)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEC-CC-SSEEEEEECCT
T ss_pred             EEEEEcCCEeEEEEEECCCCcEEEecC-CC-CceEeeccCCC
Confidence            5553 443  58999998887655432 22 34555554433

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.19  Score=36.68  Aligned_cols=54  Identities=15%  Similarity=0.164  Sum_probs=30.0

Q ss_pred             ceEEEEEccCceEeeeeeccCCCc-EEEEEcCCCCEEEEeeCCC-----cEEEEeCCCcee
Q 022184          224 ALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKYLAMGSKDG-----DICVVDVKKMEI  278 (301)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~-----~i~i~~~~~~~~  278 (301)
                      .....+|..+.+............ .+++ ..++++++.|+.++     .+.+||+.+.+-
T Consensus       211 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         211 NSVERYDVETETWTFVAPMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             cceeeeeecceeeecccCccCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence            356777877655432211111111 1222 23678888887654     388999987653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.58  E-value=0.47  Score=38.87  Aligned_cols=60  Identities=15%  Similarity=0.050  Sum_probs=44.1

Q ss_pred             cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (301)
Q Consensus       223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  283 (301)
                      .|.|.-+|+.+++.+-+.... .++..-.++..+.++++|+.||.++.+|.++|+++-.+.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            478899999999877555433 222222234467788899999999999999999987664

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.55  E-value=0.4  Score=37.85  Aligned_cols=54  Identities=15%  Similarity=0.147  Sum_probs=39.1

Q ss_pred             ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-------cCCCCeeEEEEccC
Q 022184          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-------NSDEKIELCRFSKD  208 (301)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~  208 (301)
                      ...++|+|.||+++|++--..|.|++++..+++.......       ........++|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4678999999999888765579999999877765443321       11234678999996

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.29  E-value=0.27  Score=34.19  Aligned_cols=105  Identities=13%  Similarity=0.099  Sum_probs=57.0

Q ss_pred             CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC--CEEEE------eecCCeEEEEeCCCcc
Q 022184           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAA------GGVDGHLRIMHWPSLR  145 (301)
Q Consensus        74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~------~~~dg~i~v~d~~~~~  145 (301)
                      +.+.++.+...|.+.++-+..++.. ++..         .+|... ..|..  .++..      |-+...|++-++....
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~v-kLtk---------ePI~~~-~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~G   93 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETV-KLNR---------EPINSV-LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPG   93 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCE-ECCS---------SCCSEE-CEECTTBSEEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEE-EEec---------ccccCc-CCCccCcceEEEEeehhcCcceeeEEEEccCCCC
Confidence            3446777778999999999877652 2111         122111 11211  11211      2233456666665322


Q ss_pred             eecccccCC-ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 022184          146 IILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (301)
Q Consensus       146 ~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  190 (301)
                      ....+.... -.|.+++.. +.+..++|+......+|-++.|+...
T Consensus        94 EE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrk  138 (313)
T d2hu7a1          94 EEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRE  138 (313)
T ss_dssp             CEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEE
T ss_pred             eeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceee
Confidence            223443333 456676665 34466777777788888888776544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.17  E-value=0.44  Score=36.09  Aligned_cols=158  Identities=9%  Similarity=0.126  Sum_probs=87.9

Q ss_pred             CceeEeeeCCCcceeeeCCceeccccccCCcceEEEE--CCC-CC-eEEEEecCCcEEEEEEcCCccccccccccCCCCC
Q 022184           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV--NPS-GD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (301)
Q Consensus        35 ~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~-~~-~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  110 (301)
                      +.+.+|.+++....+............-...+..+++  ++. |. ++++...+|.+..|.+....... ........+.
T Consensus        99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~-v~~~lvr~f~  177 (353)
T d1h6la_          99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY-ISGKKVRAFK  177 (353)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS-EEEEEEEEEE
T ss_pred             eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc-eeeEeeeccC
Confidence            4577888876654443211111111111234677777  664 54 45566778999999885432110 0111122223


Q ss_pred             CCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc-----ceeccccc--CCccEEEEEecC--CCc-EEEE-EeCCCcEE
Q 022184          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-----RIILDEPK--AHKSVLDMDFSL--DSE-FLAT-TSTDGSAR  179 (301)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~--~~~~i~~~~~~~--~~~-~l~~-~~~d~~i~  179 (301)
                      ....+..|.+.+....|+.+-++.-|..++....     ..+....+  ....+..|+.-.  +++ +|++ .-.+++..
T Consensus       178 ~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~  257 (353)
T d1h6la_         178 MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA  257 (353)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence            3467889999998889999988776766665321     11111111  234677777543  333 4444 44678899


Q ss_pred             EEeCCCC-ceEEEEe
Q 022184          180 IWKTEDG-VAWTFLT  193 (301)
Q Consensus       180 i~d~~~~-~~~~~~~  193 (301)
                      +||.... +.+..+.
T Consensus       258 vydr~~~~~~~g~F~  272 (353)
T d1h6la_         258 IYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEESSTTCCEEEEEE
T ss_pred             EEecCCCccccceEE
Confidence            9998763 5555554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.55  E-value=0.8  Score=36.04  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=37.7

Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee--ccc------ccCCccEEEEEecCC
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LDE------PKAHKSVLDMDFSLD  165 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~------~~~~~~i~~~~~~~~  165 (301)
                      ....+|+|.||++++++--..|.|++++..+++..  ..+      ...+.....|+++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45689999999988776645799999987766432  111      122357889999994

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.25  E-value=1.2  Score=33.61  Aligned_cols=152  Identities=13%  Similarity=0.119  Sum_probs=85.7

Q ss_pred             cEEEEEEcCCcccccccccc-CCCCCCCCCeeEEEE--ee-CCCE-EEEeecCCeEEEEeCC---Ccc----eecccccC
Q 022184           86 GCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSF--SV-DGSR-FAAGGVDGHLRIMHWP---SLR----IILDEPKA  153 (301)
Q Consensus        86 ~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~--s~-~~~~-l~~~~~dg~i~v~d~~---~~~----~~~~~~~~  153 (301)
                      +|.+|.+............. .........++.+++  ++ ++.. +++...+|.+..|.+.   .+.    .++.+ ..
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KM  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-EC
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CC
Confidence            68888886443211111110 111111234666666  66 3544 5556678999888763   222    22223 23


Q ss_pred             CccEEEEEecCCCcEEEEEeCCCcEEEEeCCC--C---ceEEEEee-cCCCCeeEEEEcc--CCCcceEEEEEEeCCcce
Q 022184          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTED--G---VAWTFLTR-NSDEKIELCRFSK--DGTKPFLFCTVQRGDKAL  225 (301)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~---~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~  225 (301)
                      ...+..+.+.+....|+.+-.+.-+..++...  .   ..+..... +....+..++.-.  ++.. |+  +++.-.+++
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~G-yl--ivSsQG~n~  255 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKG-YL--LASSQGNSS  255 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCE-EE--EEEEGGGTE
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCe-EE--EEEcCCCCe
Confidence            45789999999888899888877776666542  1   12212111 2233577777543  4443 22  577777899


Q ss_pred             EEEEEccCc-eEeeeee
Q 022184          226 LAVYDISTW-NKIGHKR  241 (301)
Q Consensus       226 i~~~d~~~~-~~~~~~~  241 (301)
                      ..+||.... +.+..+.
T Consensus       256 f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         256 YAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEEESSTTCCEEEEEE
T ss_pred             EEEEecCCCccccceEE
Confidence            999998763 4444443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.35  E-value=1.7  Score=33.11  Aligned_cols=140  Identities=13%  Similarity=0.001  Sum_probs=83.3

Q ss_pred             CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc---------eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 022184          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT  183 (301)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  183 (301)
                      ....-++.++...++++|+.++ +.|..+..-.         ........-..|..++|+.|  .|+.. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            3456788888777888888665 6666542110         00011111125888999754  44444 4567888887


Q ss_pred             CCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee-----eccCCCcEEEEEcCCCCE
Q 022184          184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-----RLLRKPASVLSISLDGKY  258 (301)
Q Consensus       184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~  258 (301)
                      ..-......... ..++..+.++|..-       +....++.+.++++..++.....     ..-...+.+++|++.|+.
T Consensus       113 ~~l~~~~~~~~~-~~~~~~~~~~p~~~-------~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         113 EELSEFRTVTSF-EKPVFQLKNVNNTL-------VILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             SSTTCEEEEEEC-SSCEEEEEECSSEE-------EEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEE
T ss_pred             eccccccccccc-cccccceecCCcee-------EEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEE
Confidence            665444333322 34578888887632       33344678888998877543211     112356788888888888


Q ss_pred             EEEeeC
Q 022184          259 LAMGSK  264 (301)
Q Consensus       259 l~~~~~  264 (301)
                      ++++..
T Consensus       185 ~v~~~g  190 (381)
T d1xipa_         185 SFAWRN  190 (381)
T ss_dssp             EEEEET
T ss_pred             EEEeCC
Confidence            877743

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=2  Score=30.78  Aligned_cols=66  Identities=15%  Similarity=0.061  Sum_probs=32.2

Q ss_pred             CCCEEEEeecC-----CeEEEEeCCCcceecccccCC-ccEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCCceE
Q 022184          123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAW  189 (301)
Q Consensus       123 ~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~  189 (301)
                      ++..++.|+.+     ..+..||..+.+....-.... ....+.... +++.++.++.++     ....+|..+.+..
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~  224 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWT  224 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeee
Confidence            45566666543     457778876654322111111 111122222 456666665443     4677777665543

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.05  E-value=5.8  Score=29.33  Aligned_cols=110  Identities=11%  Similarity=0.002  Sum_probs=68.8

Q ss_pred             CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce-------
Q 022184           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-------  146 (301)
Q Consensus        74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-------  146 (301)
                      ...+|+..+..|.++...+................+.....+..+....+...++.++..|.+..++...-..       
T Consensus       105 ~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~G  184 (323)
T d1wp5a_         105 LNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG  184 (323)
T ss_dssp             SSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC
T ss_pred             cceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEEEecceeeEeecccccccCccccc
Confidence            3568888899999999888654321111111122334556777777777777899999999999998643221       


Q ss_pred             --ecccccCCccEEEE-EecCCCcEEEEEeCCCcEEEEeCC
Q 022184          147 --ILDEPKAHKSVLDM-DFSLDSEFLATTSTDGSARIWKTE  184 (301)
Q Consensus       147 --~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d~~i~i~d~~  184 (301)
                        ..++. ..+.+... ...+++..+++.+..|..+.-.+.
T Consensus       185 V~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~  224 (323)
T d1wp5a_         185 VKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLT  224 (323)
T ss_dssp             EECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred             ccccccc-cccccchhhhccccccceeeeeeeheeecccch
Confidence              11222 22344443 445566778888888887776553