Citrus Sinensis ID: 022189

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MAFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHcccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEEEEEEccccccccccEEEEEEEEEEEEEEEEEcccccEEEcccccEEEEEEEEEEEEccccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHcccccccHHHHHHHccccccccccccccEEEEcEEccccccccccccccccHHHccHHHHHcccEEEEEEccccEEcccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEEEEccccccccEEEEEEEEEEEEEEEEEEcccccEEEccccccHHHHEEEEEEcccccccccEEEEEEEEc
Coil and Loop (DISEMBL)
MAFLRRLLTNhalnrtvgvSESAYLLgssrsyssgvsivpeiysqnissclckdhgalpwtrgstmtlrsslapksllYLNEKRfataqpkapaqARQMGAlkvsisspgfiyepyapreaipfwrrwftrdgwrrtKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFeaydskgvtvagdktkEVLVRDIWVFekslfhpgaywrlcgriki
Flexible Loop (DISEMBL)
MAFLRRLLtnhalnrtvgvsesaYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEpyapreaipfwrrwftrdgwrRTKDDIILELKSAYAIAKlrksgyskqkfYTEAVDLYKEINTlmangdktslRKAVTEKMYSALKNeikqresmwssVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQkfeaydskgvtvagdktkeVLVRDIWVfekslfhpgaywrlcgriki
Low Complexity Region (SEG)
MAFLRRLLTNHALNRTVGVSEsayllgssrsyssgvsIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Disordered region (IsUnstruct)
***LRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEK******************LKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI**
Disordered Region (DISOPRED)
****R**LTNHALNRT*********************IVPEIYSQNISSCLCKDHGALPWT**********************************************SPGFIYEPYA****************WRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK*
Disordered Region (DISEMBL)
MAFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFAT**************LKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Disordered Region (DISPRO)
*AFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q9VCX3	361	Probable 39S ribosomal pr	yes	no	0.607	0.506	0.271	4e-11
Q4QQQ4	309	39S ribosomal protein L45	yes	no	0.614	0.598	0.235	4e-08
P59480	309	39S ribosomal protein L45	N/A	no	0.614	0.598	0.235	9e-08
Q9D0Q7	306	39S ribosomal protein L45	yes	no	0.617	0.607	0.23	2e-07
Q3T142	306	39S ribosomal protein L45	yes	no	0.544	0.535	0.219	4e-06
Q95Y71	357	Probable 39S ribosomal pr	yes	no	0.461	0.389	0.263	1e-05
Q9BRJ2	306	39S ribosomal protein L45	yes	no	0.445	0.437	0.255	2e-05
Q616T6	361	Probable 39S ribosomal pr	N/A	no	0.461	0.385	0.25	3e-05

>sp|Q9VCX3|RM45_DROME Probable 39S ribosomal protein L45, mitochondrial OS=Drosophila melanogaster GN=mRpL45 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 16/199 (8%)

Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
           IS  G I+E Y P E     +   +  G ++  + +  + KS  A+ K+R     +S   
Sbjct: 109 ISCTGGIFEAYVPPEG-DGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYDENFSSDD 167

Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
           F  EA D+Y + +T MA  DK  +R+ V+E+ Y  + + +K +     ++ W+ ++ +  
Sbjct: 168 FGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVKDK-----TIRWKFLQSLEP 222

Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 280
            R + AR+  V   +    F Q+T+ F ++Q    YD  G  + G    E++ +D+    
Sbjct: 223 PRVVHARVTEVITKENQ--FAQVTVRFHSQQMLAIYDRFGRLMHGS---EIITKDVLEYV 277

Query: 281 VFEKSLFHPGAYWRLCGRI 299
           VFEK + +    WRL  +I
Sbjct: 278 VFEKHISNEYGKWRLHDKI 296

Drosophila melanogaster (taxid: 7227)

>sp|Q4QQQ4|RM45_XENTR 39S ribosomal protein L45, mitochondrial OS=Xenopus tropicalis GN=mrpl45 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 15/200 (7%)

Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
           ++I+    I++PY P E         +++G ++    +     S  AI K+++  S ++ 
Sbjct: 76  INIACTAGIFDPYIPPEGDARLSS-LSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTT 134

Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
           + F  +A +L+   +  +   D+  L   VTE+ Y  +      R + + ++ W  +E I
Sbjct: 135 KTFPEKAQELFIAAHQCLTKFDRHELHTLVTERCYPEMV-----RGNRYRTIQWSFVESI 189

Query: 222 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEVLVRDI 279
              R ++ R    V + +L   + Q+T+    KQ    YD  G  + G ++ ++VL  + 
Sbjct: 190 EAPRVVQVRCPEMVSKGNL---YAQVTVRMHNKQSLTIYDRFGRVMCGSEEPRDVL--EY 244

Query: 280 WVFEKSLFHPGAYWRLCGRI 299
            VFE+ + +P   WR+ G+I
Sbjct: 245 VVFERHMVNPYGTWRMHGKI 264

Xenopus tropicalis (taxid: 8364)

>sp|P59480|RM45_XENLA 39S ribosomal protein L45, mitochondrial OS=Xenopus laevis GN=mrpl45 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 15/200 (7%)

Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
           ++I+    I +PY P E         +++G ++    +     S  AI K+++  S ++ 
Sbjct: 76  INIACTAGILDPYVPPEGDARLSS-LSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTT 134

Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
           + F  +A +++   +  + N D+  L   VTE+ Y  +      R + + ++ W  +E I
Sbjct: 135 KTFPEKAQEIFITAHKYLTNFDRHKLHTLVTERCYPEMV-----RGNRYRTIRWSFVESI 189

Query: 222 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEVLVRDI 279
              R ++ R    V + +L   + Q+T+    KQ    YD  G  + G ++ ++VL  + 
Sbjct: 190 EAPRVVQVRCPEMVSKGNL---YAQVTVRMHNKQTLIVYDRFGRVMCGSEEPRDVL--EY 244

Query: 280 WVFEKSLFHPGAYWRLCGRI 299
            VFE+ + +P   WR+ G+I
Sbjct: 245 VVFERHMVNPYGTWRMHGKI 264

Xenopus laevis (taxid: 8355)

>sp|Q9D0Q7|RM45_MOUSE 39S ribosomal protein L45, mitochondrial OS=Mus musculus GN=Mrpl45 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 14/200 (7%)

Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
           + ++    I++PY P E         +++G  +  + +     S  AI K+R+  + +  
Sbjct: 76  IHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQRTERLRKNAASQLAIRKIREFDANFKT 134

Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
           + F  +A D++ E +  + N D   L   VTE  +  +  ++K     + +V W  +E +
Sbjct: 135 KDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMVWDLK-----YKTVRWGFVESL 189

Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDI 279
              + +  R  G+   + + ++ Q+T+    +Q    YD  G  + G  D  K+VL  + 
Sbjct: 190 EPAQVVHVRCSGL--VNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVL--EY 245

Query: 280 WVFEKSLFHPGAYWRLCGRI 299
            VFE+ L +P   WR+  +I
Sbjct: 246 VVFERHLMNPYGSWRMHAKI 265

Mus musculus (taxid: 10090)

>sp|Q3T142|RM45_BOVIN 39S ribosomal protein L45, mitochondrial OS=Bos taurus GN=MRPL45 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTS 186
            +++G  +  + +   + S  +I ++++S   +  + F  +A D++ E +  + N D   
Sbjct: 100 LSKEGLAQRTERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDR 159

Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 246
           L   VTE  +  +  +IK     + +V+W  +E +   + ++ R   +     +  + Q+
Sbjct: 160 LHTLVTENCFPDMVWDIK-----YKTVSWSFVESLEPPQVVQVRCSSLVTK--SNTYGQV 212

Query: 247 TLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
           T+    +Q    YD  G  + G +     V +  VFEK L +P   WR+ G+I
Sbjct: 213 TVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLANPYGSWRMHGKI 265

Bos taurus (taxid: 9913)

>sp|Q95Y71|RM45_CAEEL Probable 39S ribosomal protein L45, mitochondrial OS=Caenorhabditis elegans GN=Y119D3B.16 PE=3 SV=3

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 155 RKSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
           +K G+ K   + F  +A D+Y + +  +   DKT++ K +TE  ++ +  +++       
Sbjct: 164 KKQGFEKFDIKTFCAKAEDIYVQAHRALEQRDKTAMYKYITEYAFAKMWPDVEN-----G 218

Query: 212 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 271
           SV +ELI  +   R +  R         N +  Q+T+    +QK   YD  G  + G + 
Sbjct: 219 SVRFELISVLEPSRVVAVRCFDNPPKSGNDI-AQITVRMHTRQKLAVYDRFGGLLLGSED 277

Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
           +E  V +  VFE  +      WRL G+I
Sbjct: 278 EEKDVVEYVVFENHIAVVDGEWRLHGKI 305

Caenorhabditis elegans (taxid: 6239)

>sp|Q9BRJ2|RM45_HUMAN 39S ribosomal protein L45, mitochondrial OS=Homo sapiens GN=MRPL45 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 11/145 (7%)

Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
           + +  + F  +A D++ E +  + N D   L   VTE  +  +  +IK     + +V W 
Sbjct: 130 ANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK-----YKTVRWS 184

Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEV 274
            +E +     ++ R   +   +   V+ Q+T+    +Q    YD  G  + G  D  K+V
Sbjct: 185 FVESLEPSHVVQVRCSSM--MNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDV 242

Query: 275 LVRDIWVFEKSLFHPGAYWRLCGRI 299
           L  +  VFEK L +P   WR+  +I
Sbjct: 243 L--EYVVFEKQLTNPYGSWRMHTKI 265

Homo sapiens (taxid: 9606)

>sp|Q616T6|RM45_CAEBR Probable 39S ribosomal protein L45, mitochondrial OS=Caenorhabditis briggsae GN=CBG15146 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 9/148 (6%)

Query: 155 RKSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
           +K G+ K   + F  +A D+Y+  +  M   DK  + + +TE  ++ +  +++       
Sbjct: 167 KKQGFEKFDVKTFCAKAEDIYERAHKAMEARDKKEMYRCITEYAFAKMWPDVEN-----G 221

Query: 212 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 271
           SV +EL+  +   R +  R         N +  Q+T+    +QK   YD  G  + G + 
Sbjct: 222 SVRFELVSIVEPSRVVAVRCFDNPPKSGNDI-AQITVRMHTRQKLALYDRFGGLILGSED 280

Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
           +E  V +  VFE  +      WRL G+I
Sbjct: 281 EEKDVVEYVVFENHIAVVDGEWRLHGKI 308

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
388499100	305	unknown [Lotus japonicus]	0.990	0.977	0.654	1e-109
356576761	309	PREDICTED: probable 39S ribosomal protei	0.990	0.964	0.643	1e-107
449485732	302	PREDICTED: probable 39S ribosomal protei	0.973	0.970	0.661	1e-106
449435699	302	PREDICTED: uncharacterized protein LOC10	0.973	0.970	0.657	1e-105
255542538	619	pentatricopeptide repeat-containing prot	0.910	0.442	0.693	1e-104
186526131	296	Mitochondrial inner membrane translocase	0.980	0.996	0.615	1e-102
297808779	314	protein translocase [Arabidopsis lyrata	0.983	0.942	0.592	1e-102
145334561	313	Mitochondrial inner membrane translocase	0.980	0.942	0.583	1e-100
224123246	233	predicted protein [Populus trichocarpa]	0.740	0.957	0.771	1e-99
359487996	379	PREDICTED: 39S ribosomal protein L45, mi	0.671	0.532	0.787	2e-92

>gi|388499100|gb|AFK37616.1| unknown [Lotus japonicus]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/301 (65%), Positives = 233/301 (77%), Gaps = 3/301 (0%)

Query: 1   MAFLRRLLTNHALNRT--VGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGAL 58
           M  L+R      L R+  +G   S+YLLGS RSYS+ +S   E   ++  S L K H   
Sbjct: 1   MMPLKRFHAVRTLYRSSQIGQDSSSYLLGSCRSYSNALSNGSEGNFKSFHSHLFKCHDGF 60

Query: 59  PWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAP 118
           P   G T+TLRS++A +  +++N+KR  + Q K  + +R +G  ++S+SSPGFIYEPY P
Sbjct: 61  PLAGGKTLTLRSTMAAELSIFMNDKRMLSTQLKGSSLSRAVGT-QISVSSPGFIYEPYEP 119

Query: 119 REAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTL 178
           RE IPFW+RWFTR GW+RTK D+ILELKSAYAI KLRKSGYSK +FY EA  +YKEIN L
Sbjct: 120 REKIPFWQRWFTRSGWKRTKQDVILELKSAYAIQKLRKSGYSKSRFYNEAFKMYKEINAL 179

Query: 179 MANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRND 238
           +ANGDK SLRKAVTEKMYSALKNEIKQRE+ W+ V WELIEP+I++RTLRARLIGVD  D
Sbjct: 180 IANGDKKSLRKAVTEKMYSALKNEIKQRETTWNKVYWELIEPVIRVRTLRARLIGVDPKD 239

Query: 239 LNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGR 298
           LNKVFVQLTLE  AKQKFEAYDSKG  VAGDK KEVLVRDIWVFEKS+FHPGAYWRLCGR
Sbjct: 240 LNKVFVQLTLEITAKQKFEAYDSKGSVVAGDKNKEVLVRDIWVFEKSMFHPGAYWRLCGR 299

Query: 299 I 299
           +
Sbjct: 300 L 300

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576761|ref|XP_003556498.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like [Glycine max]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/300 (64%), Positives = 235/300 (78%), Gaps = 2/300 (0%)

Query: 1   MAFLRRLLTNHALNRTVGVSESA-YLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALP 59
           M   +RL     L R+  + ES+ YLLGS +SYSS +S   E   ++  S L K     P
Sbjct: 2   MTPFKRLHLVRTLYRSSQIGESSSYLLGSCKSYSSALSNGSEGNFRSFHSHLLKGQDGFP 61

Query: 60  WTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPR 119
           +    ++TLRS++A +  +++N +R  + Q KA AQARQ+G  ++S+SSPGFIYEPY PR
Sbjct: 62  FAGVKSLTLRSTMAAELSIFMNNRRMLSTQVKASAQARQVGQ-QISLSSPGFIYEPYEPR 120

Query: 120 EAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLM 179
           + IPFW+RWFTR G RRTK+DIILELKSAYAIAKLRK+GYSK +FY EA ++YKEINTL+
Sbjct: 121 DKIPFWKRWFTRSGLRRTKNDIILELKSAYAIAKLRKTGYSKNQFYNEAANMYKEINTLI 180

Query: 180 ANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDL 239
           A GDK +LRKAVTE M+SALKNEIKQRE+ WS V WE++EP++K+RTLRARLIGVDR DL
Sbjct: 181 AKGDKRTLRKAVTENMFSALKNEIKQRETAWSRVYWEMVEPVVKIRTLRARLIGVDRKDL 240

Query: 240 NKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
           NK F+QLTLE LAKQKFEAYDSKG  VAGDK+KEVLVRDIWVFEKS+FH GA WRLCGRI
Sbjct: 241 NKTFIQLTLEILAKQKFEAYDSKGSVVAGDKSKEVLVRDIWVFEKSMFHAGATWRLCGRI 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485732|ref|XP_004157259.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like [Cucumis sativus]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/298 (66%), Positives = 231/298 (77%), Gaps = 5/298 (1%)

Query: 4   LRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRG 63
           LR L T   L RT  +      +GSS +YS G++ V ++  Q  SS L   H A    RG
Sbjct: 6   LRSLQT---LYRTPKIRPFTSPIGSSANYSCGITNVSQLGIQKTSSFLSNSHSAFSLARG 62

Query: 64  STMTLRSSLAPKSLLYLNEK--RFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREA 121
             M + S++A + L++ +    R  T Q KAP QARQ   LKV++ SPGFIYEPY+PR+ 
Sbjct: 63  HKMIICSAVAAEFLVFSHGIGIRLVTTQVKAPPQARQKIGLKVTMLSPGFIYEPYSPRQQ 122

Query: 122 IPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMAN 181
           +PFW+RWFTR GW+RTKDDIILELKSAYAIAKLRK GYSK+KFY EA +LY+EINTL+AN
Sbjct: 123 LPFWQRWFTRSGWKRTKDDIILELKSAYAIAKLRKKGYSKKKFYEEAANLYREINTLIAN 182

Query: 182 GDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNK 241
           GDKTSLRKAVTE MYSALKNEIK RES WS V WE+I P++K+RTLRARLIGVDR+DL K
Sbjct: 183 GDKTSLRKAVTENMYSALKNEIKLRESKWSKVYWEMIVPVVKIRTLRARLIGVDRSDLEK 242

Query: 242 VFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
           VFVQLTLE LAKQKFEAY+S+G  VAGDK+KEVLVRDIWVFEKSLFH GA+WRLCGRI
Sbjct: 243 VFVQLTLEILAKQKFEAYNSEGAVVAGDKSKEVLVRDIWVFEKSLFHEGAFWRLCGRI 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435699|ref|XP_004135632.1| PREDICTED: uncharacterized protein LOC101211143 [Cucumis sativus]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/298 (65%), Positives = 230/298 (77%), Gaps = 5/298 (1%)

Query: 4   LRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRG 63
           LR L T   L RT  +      +GSS +YS G++ V ++  Q  SS L   H A    RG
Sbjct: 6   LRSLQT---LYRTPKIRPFTSPIGSSANYSCGITNVSQLGIQKTSSFLSNSHSAFSLARG 62

Query: 64  STMTLRSSLAPKSLLYLNEK--RFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREA 121
             M + S++A +  ++ +    R  T Q KAP QARQ   LKV++ SPGFIYEPY+PR+ 
Sbjct: 63  HKMIICSAVAAEFSVFSHGIGIRLVTTQVKAPPQARQKIGLKVTMLSPGFIYEPYSPRQQ 122

Query: 122 IPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMAN 181
           +PFW+RWFTR GW+RTKDDIILELKSAYAIAKLRK GYSK+KFY EA +LY+EINTL+AN
Sbjct: 123 LPFWQRWFTRSGWKRTKDDIILELKSAYAIAKLRKKGYSKKKFYEEAANLYREINTLIAN 182

Query: 182 GDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNK 241
           GDKTSLRKAVTE MYSALKNEIK RES WS V WE+I P++K+RTLRARLIGVDR+DL K
Sbjct: 183 GDKTSLRKAVTENMYSALKNEIKLRESKWSKVYWEMIVPVVKIRTLRARLIGVDRSDLEK 242

Query: 242 VFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
           VFVQLTLE LAKQKFEAY+S+G  VAGDK+KEVLVRDIWVFEKSLFH GA+WRLCGRI
Sbjct: 243 VFVQLTLEILAKQKFEAYNSEGAVVAGDKSKEVLVRDIWVFEKSLFHEGAFWRLCGRI 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542538|ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548293|gb|EEF49784.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/274 (69%), Positives = 216/274 (78%)

Query: 1   MAFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPW 60
           MA LRRL    AL+RT      + LL SSRSY S  S   E  SQ I     K H A PW
Sbjct: 1   MALLRRLQAIRALSRTAESRNPSCLLQSSRSYYSDFSNGLEFNSQRIFLSPYKGHNAFPW 60

Query: 61  TRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPRE 120
           T GSTMT +SS   +   ++N+KR  T Q +AP QARQMGALKVS+SSPGFIYEPYAPRE
Sbjct: 61  THGSTMTHQSSTPIELSTFVNDKRLLTTQARAPPQARQMGALKVSVSSPGFIYEPYAPRE 120

Query: 121 AIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMA 180
            IPFWRRWFT+ GWRRTK+DIILELKSAYA++KLRKSGYSK + Y EA++LYKEI+T++A
Sbjct: 121 PIPFWRRWFTKSGWRRTKEDIILELKSAYAVSKLRKSGYSKHQLYKEAIELYKEISTMIA 180

Query: 181 NGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLN 240
           NGDK SLRKAVTEKMYS LKNEIKQRESMWS V WEL+EP+IK+RTLRARLIGVDR+D +
Sbjct: 181 NGDKNSLRKAVTEKMYSELKNEIKQRESMWSKVYWELVEPVIKIRTLRARLIGVDRSDFS 240

Query: 241 KVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
           KVF+QLTLE L KQKFEAYDSK   VAGDKTKE+
Sbjct: 241 KVFIQLTLELLTKQKFEAYDSKDTVVAGDKTKEL 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186526131|ref|NP_001119286.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana] gi|332006297|gb|AED93680.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/302 (61%), Positives = 229/302 (75%), Gaps = 7/302 (2%)

Query: 1   MAFLRRLLTNHALNRTVGVSESAYL-LGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALP 59
           M+ +RR  T  +L +T G  ES+ L  G  RSY S +  VPE + ++  S L + H    
Sbjct: 1   MSLVRRFQTVRSLLKTAGSRESSSLPFGCWRSYHSSLCHVPEAHGKSAYSRLYEGHSV-- 58

Query: 60  WTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPR 119
               +T  LRS++  + L ++NEKR AT Q KAP Q ++ GA++VS+ SPGF+YEPYA R
Sbjct: 59  ----NTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQKTGAVRVSMVSPGFVYEPYALR 114

Query: 120 EAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLM 179
           E I  WRR FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK  FY EA++LYK+IN  M
Sbjct: 115 EKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQM 174

Query: 180 ANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDL 239
           ANG+K ++RK VTE+MYSALKNEIKQRE+MW  V WE++EP++K+RTL+ARLIG+DR DL
Sbjct: 175 ANGEKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDL 234

Query: 240 NKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
            K F+QLTLEFL KQKFEAYD+KG   AGDK KEVLVRDIWVFEKSLFH GAYWRLCGRI
Sbjct: 235 KKAFIQLTLEFLTKQKFEAYDAKGNVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCGRI 294

Query: 300 KI 301
           K+
Sbjct: 295 KL 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808779|ref|XP_002872273.1| protein translocase [Arabidopsis lyrata subsp. lyrata] gi|297318110|gb|EFH48532.1| protein translocase [Arabidopsis lyrata subsp. lyrata]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/319 (59%), Positives = 232/319 (72%), Gaps = 23/319 (7%)

Query: 1   MAFLRRLLTNHALNRTVGVSESAYL------------------LGSSRSYSSGVSIVPEI 42
           MA +RR  T  +L +T G  ES+ L                   G  RSY S +  VPE 
Sbjct: 1   MALVRRFQTVRSLLKTAGSRESSSLPFRNGNEFSLIQIGDDFRFGCWRSYHSSLYQVPEA 60

Query: 43  YSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGAL 102
           + +++ S L + H        +T  LRS++  +SL + N+KR AT Q KAP Q ++ GA+
Sbjct: 61  HGKSVYSRLYEGH-----NNANTHLLRSTMIAESLPFTNDKRSATTQVKAPPQLQKTGAV 115

Query: 103 KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQ 162
           +VS+ SPGF+YEPYA +E I  WRR FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK 
Sbjct: 116 RVSMVSPGFVYEPYALQEKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSKN 175

Query: 163 KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPII 222
            FY EA++LYK+IN LMANGDK ++RK VTE+MYSALKNEIKQRE+MW  V WE+IEP++
Sbjct: 176 TFYIEALELYKQINILMANGDKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEMIEPVV 235

Query: 223 KMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVF 282
           K+RTL+ARLIG+DR DL K F+QLTLEFL KQKFEAYD+KG  VAGD+ KEVLVRDIWVF
Sbjct: 236 KIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKGNVVAGDRNKEVLVRDIWVF 295

Query: 283 EKSLFHPGAYWRLCGRIKI 301
           EKSLFH GAYWRLCGRIK+
Sbjct: 296 EKSLFHTGAYWRLCGRIKL 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334561|ref|NP_001078626.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana] gi|26451284|dbj|BAC42743.1| unknown protein [Arabidopsis thaliana] gi|332006296|gb|AED93679.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/319 (58%), Positives = 229/319 (71%), Gaps = 24/319 (7%)

Query: 1   MAFLRRLLTNHALNRTVGVSESAYL------------------LGSSRSYSSGVSIVPEI 42
           M+ +RR  T  +L +T G  ES+ L                   G  RSY S +  VPE 
Sbjct: 1   MSLVRRFQTVRSLLKTAGSRESSSLPFRNGNEFSLIQIGDDFRFGCWRSYHSSLCHVPEA 60

Query: 43  YSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGAL 102
           + ++  S L + H        +T  LRS++  + L ++NEKR AT Q KAP Q ++ GA+
Sbjct: 61  HGKSAYSRLYEGHSV------NTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQKTGAV 114

Query: 103 KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQ 162
           +VS+ SPGF+YEPYA RE I  WRR FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK 
Sbjct: 115 RVSMVSPGFVYEPYALREKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSKN 174

Query: 163 KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPII 222
            FY EA++LYK+IN  MANG+K ++RK VTE+MYSALKNEIKQRE+MW  V WE++EP++
Sbjct: 175 TFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEMVEPVV 234

Query: 223 KMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVF 282
           K+RTL+ARLIG+DR DL K F+QLTLEFL KQKFEAYD+KG   AGDK KEVLVRDIWVF
Sbjct: 235 KIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKGNVAAGDKNKEVLVRDIWVF 294

Query: 283 EKSLFHPGAYWRLCGRIKI 301
           EKSLFH GAYWRLCGRIK+
Sbjct: 295 EKSLFHTGAYWRLCGRIKL 313

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123246|ref|XP_002319031.1| predicted protein [Populus trichocarpa] gi|222857407|gb|EEE94954.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 176/228 (77%), Positives = 199/228 (87%), Gaps = 5/228 (2%)

Query: 78  LYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 137
           ++LN+KR AT +  AP QARQMG+LKVSISSPGFIYEPYAPR+ I FWRRWFT+ GWRRT
Sbjct: 5   IFLNDKRSATTKVNAPPQARQMGSLKVSISSPGFIYEPYAPRDTISFWRRWFTKSGWRRT 64

Query: 138 KDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYS 197
           K+DIILELK+AYAI KLRK+GYSK KFY EA+ LYKEINTL+ANGDKT+LRKAVTEKMYS
Sbjct: 65  KNDIILELKNAYAIVKLRKTGYSKHKFYVEAIKLYKEINTLLANGDKTALRKAVTEKMYS 124

Query: 198 ALKNEIKQRESMW--SSVNWELIEPIIKMRTLRARL---IGVDRNDLNKVFVQLTLEFLA 252
            LKNEIKQR+S W  S + WE+IEP + +RTLRARL   IGVD++DLNKVF+QLTLE   
Sbjct: 125 ELKNEIKQRQSAWNMSKLYWEMIEPAVLIRTLRARLATEIGVDKSDLNKVFIQLTLEIKT 184

Query: 253 KQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK 300
           KQKFEAYDSKG  VAGDK KE+LVR+IWVFEKSLFHPGAYWRLCGRIK
Sbjct: 185 KQKFEAYDSKGARVAGDKNKEILVREIWVFEKSLFHPGAYWRLCGRIK 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487996|ref|XP_002284948.2| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Vitis vinifera]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/202 (78%), Positives = 181/202 (89%)

Query: 100 GALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGY 159
           GALKVS+ SPG IYEPYAPRE I FW+RWFTR+GWRRTK+DI+LELKSAYA+AKLRK GY
Sbjct: 178 GALKVSMQSPGIIYEPYAPREPISFWKRWFTRNGWRRTKEDIVLELKSAYAVAKLRKIGY 237

Query: 160 SKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE 219
           S+QKFYTEAVDLYKEIN+ +AN  K SLRK+VTE MYSALKNEIKQRES W  V WE++E
Sbjct: 238 SRQKFYTEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEIKQRESKWHKVYWEMVE 297

Query: 220 PIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 279
           P++K+RTLRAR+I +DRND+NK F+QLTLEFL KQKFEAYDSKG  VAGDK KEVLVRD+
Sbjct: 298 PVVKIRTLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKGCVVAGDKDKEVLVRDV 357

Query: 280 WVFEKSLFHPGAYWRLCGRIKI 301
           WVFE+SLFHPGAYWRLCGRI +
Sbjct: 358 WVFERSLFHPGAYWRLCGRISL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:4010713974	313	AT5G27395 [Arabidopsis thalian	0.853	0.821	0.650	6.5e-90
FB|FBgn0263863	361	mRpL45 "mitochondrial ribosoma	0.611	0.509	0.287	1.1e-12
RGD|1304913	306	Mrpl45 "mitochondrial ribosoma	0.700	0.689	0.256	7.8e-09
ZFIN|ZDB-GENE-040426-1041	317	mrpl45 "mitochondrial ribosoma	0.627	0.596	0.24	1.1e-08
MGI|MGI:1914286	306	Mrpl45 "mitochondrial ribosoma	0.700	0.689	0.243	2.3e-08
UNIPROTKB|E1BTZ8	261	MRPL45 "Uncharacterized protei	0.591	0.681	0.260	3e-08
UNIPROTKB|F6XHK1	302	MRPL45 "Uncharacterized protei	0.774	0.771	0.246	1.5e-07
UNIPROTKB|E2R6H1	303	MRPL45 "Uncharacterized protei	0.774	0.768	0.246	1.5e-07
UNIPROTKB|F1MEP0	306	MRPL45 "39S ribosomal protein	0.694	0.683	0.241	3.6e-07
UNIPROTKB|Q3T142	306	MRPL45 "39S ribosomal protein	0.694	0.683	0.241	3.6e-07

TAIR|locus:4010713974 AT5G27395 [Arabidopsis thaliana (taxid:3702)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 171/263 (65%), Positives = 208/263 (79%)

Query:    39 VPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQ 98
             VPE + ++  S L + H        +T  LRS++  + L ++NEKR AT Q KAP Q ++
Sbjct:    57 VPEAHGKSAYSRLYEGHSV------NTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQK 110

Query:    99 MGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSG 158
              GA++VS+ SPGF+YEPYA RE I  WRR FTR GWRRTK+D I EL+SAYAIAKLRK+G
Sbjct:   111 TGAVRVSMVSPGFVYEPYALREKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKTG 170

Query:   159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
             YSK  FY EA++LYK+IN  MANG+K ++RK VTE+MYSALKNEIKQRE+MW  V WE++
Sbjct:   171 YSKNTFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEMV 230

Query:   219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
             EP++K+RTL+ARLIG+DR DL K F+QLTLEFL KQKFEAYD+KG   AGDK KEVLVRD
Sbjct:   231 EPVVKIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKGNVAAGDKNKEVLVRD 290

Query:   279 IWVFEKSLFHPGAYWRLCGRIKI 301
             IWVFEKSLFH GAYWRLCGRIK+
Sbjct:   291 IWVFEKSLFHTGAYWRLCGRIKL 313

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

FB|FBgn0263863 mRpL45 "mitochondrial ribosomal protein L45" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 57/198 (28%), Positives = 100/198 (50%)

Query:   106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQK 163
             IS  G I+E Y P E     +   +  G ++  + +  + KS  A+ K+R     +S   
Sbjct:   109 ISCTGGIFEAYVPPEG-DGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYDENFSSDD 167

Query:   164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
             F  EA D+Y + +T MA  DK  +R+ V+E+ Y  + + +K +     ++ W+ ++ +  
Sbjct:   168 FGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVKDK-----TIRWKFLQSLEP 222

Query:   224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDK--TKEVLVRDIWV 281
              R + AR+  V   + N+ F Q+T+ F ++Q    YD  G  + G +  TK+VL  +  V
Sbjct:   223 PRVVHARVTEVITKE-NQ-FAQVTVRFHSQQMLAIYDRFGRLMHGSEIITKDVL--EYVV 278

Query:   282 FEKSLFHPGAYWRLCGRI 299
             FEK + +    WRL  +I
Sbjct:   279 FEKHISNEYGKWRLHDKI 296

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

RGD|1304913 Mrpl45 "mitochondrial ribosomal protein L45" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 58/226 (25%), Positives = 102/226 (45%)

Query:    79 YLNEKRFATAQPKAPAQARQMGALK-VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 137
             Y  EK F     KA     Q    + + ++    I++PY P E         +++G  + 
Sbjct:    50 YKTEKEFLEYARKAGLVIPQERLERPIHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQR 108

Query:   138 KDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 195
              + +   + S  AI K+++  + +  + F  +A D++ E +  + N D   L   VTE  
Sbjct:   109 TERLRKNVASQLAIRKIKEFDANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHC 168

Query:   196 YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK 255
             +  +  E+K +   WS V  E +EP    + +  R  G+  N  N ++ Q+T+    +Q 
Sbjct:   169 FPDMVWELKYKTVRWSFV--ESLEPA---QVVHVRSSGLV-NQSN-MYGQVTVRLHTRQT 221

Query:   256 FEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
                YD  G  + G  D  K+VL  +  VFE+ L +P   WR+  +I
Sbjct:   222 LAIYDRFGRLMYGQEDVPKDVL--EYVVFERHLMNPYGSWRMHAKI 265

GO:0005739 "mitochondrion" evidence=ISO

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1041 mrpl45 "mitochondrial ribosomal protein L45" [Danio rerio (taxid:7955)]

 Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 48/200 (24%), Positives = 92/200 (46%)

Query:   102 LKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGY 159
             + +S +  G IY+PY P E         T++G ++  + +     S  AI K++   S +
Sbjct:    82 INISCTVAG-IYDPYVPPEGDARLST-LTKEGLKQRTEQLRQTAASQLAIRKIKDYDSTF 139

Query:   160 SKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE 219
             + ++F      ++ + +  +   +K  L   VTE+ Y  +      R + + ++ W  IE
Sbjct:   140 TSKEFPGIGQQIFIDAHAALTEFNKEKLHSLVTERCYPEMV-----RGNRYKTLRWRFIE 194

Query:   220 PIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 279
              +   R ++AR    D      ++ Q+T+   ++Q    YD  G  + GD+ +   V + 
Sbjct:   195 SLEPPRLVQARC--PDMISKGNLYGQVTVRMHSRQTLAIYDRFGRLMLGDEEEPRDVLEY 252

Query:   280 WVFEKSLFHPGAYWRLCGRI 299
              V E+ L +P   WRL G+I
Sbjct:   253 LVMERHLVNPYGRWRLHGKI 272

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

MGI|MGI:1914286 Mrpl45 "mitochondrial ribosomal protein L45" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 55/226 (24%), Positives = 100/226 (44%)

Query:    79 YLNEKRFATAQPKAPAQARQMGALK-VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 137
             Y  EK F     KA     Q    + + ++    I++PY P E         +++G  + 
Sbjct:    50 YKTEKEFLEYARKAGLVIPQERLERPIHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQR 108

Query:   138 KDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 195
              + +     S  AI K+R+  + +  + F  +A D++ E +  + N D   L   VTE  
Sbjct:   109 TERLRKNAASQLAIRKIREFDANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHC 168

Query:   196 YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK 255
             +  +  ++K     + +V W  +E +   + +  R  G+  N  N ++ Q+T+    +Q 
Sbjct:   169 FPDMVWDLK-----YKTVRWGFVESLEPAQVVHVRCSGLV-NQSN-MYGQVTVRLHTRQT 221

Query:   256 FEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
                YD  G  + G  D  K+VL  +  VFE+ L +P   WR+  +I
Sbjct:   222 LAIYDRFGRLMYGQEDVPKDVL--EYVVFERHLMNPYGSWRMHAKI 265

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E1BTZ8 MRPL45 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 147 (56.8 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 50/192 (26%), Positives = 89/192 (46%)

Query:   112 IYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAV 169
             I +PY P E         +++G ++  + +     S  A+ K++     +S + F   A 
Sbjct:    67 IIDPYVPPEGDARVTS-LSKEGLKQRMEKLKQTAASQLALRKVKDHDPNFSTKTFPEVAQ 125

Query:   170 DLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRA 229
             ++Y E +  +AN +K  L   VTE+ Y  +      R + + ++ W  +E +   R    
Sbjct:   126 EIYVEAHNSLANFNKQKLHSLVTERCYPDMV-----RGNRYKTIRWSFVESLEPPRVAHV 180

Query:   230 RLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG-VTVAGDKT-KEVLVRDIWVFEKSLF 287
             R   V  N  N ++ Q+T+    +Q    YD  G +   G+K  K+VL  +  VFE+ L 
Sbjct:   181 RCTSVV-NQGN-LYGQVTVRMHTRQTLAIYDRFGRLMYGGEKLPKDVL--EYVVFERYLV 236

Query:   288 HPGAYWRLCGRI 299
             +P   WR+ G+I
Sbjct:   237 NPYGTWRMHGKI 248

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

UNIPROTKB|F6XHK1 MRPL45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 67/272 (24%), Positives = 124/272 (45%)

Query:    50 CLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFA--TAQPKAPAQ------ARQMGA 101
             CL K  G   W+R   +  +S++    +    +KRF   T +PK  ++      AR+ G 
Sbjct:    11 CLSKALGW--WSRQPVLVTQSTVV---VPVRTKKRFTPPTYEPKYKSEKEFMEYARKAGL 65

Query:   102 L--------KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAK 153
             +         + ++    I++ Y P E          ++G  +  + +  ++ S  +I K
Sbjct:    66 VIPPERLERPLHLACTAGIFDAYVPPEGDARLSS-LAKEGLAQRSEQLKKKVASQLSIRK 124

Query:   154 LRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
             +R+    +  + F  +A D++ E +  + N D   L   VTE  +  +  +IK +   WS
Sbjct:   125 IREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIKYKTVRWS 184

Query:   212 SVNWELIEP--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG- 268
              V  E +EP  ++++R   + L+    N  N ++ Q+T+    +Q    YD  G  + G 
Sbjct:   185 FV--ESLEPPQVVQVRC--SNLL----NQGN-IYGQVTVRMHTRQTLAIYDRFGRLMYGQ 235

Query:   269 -DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
              D  ++VL  +  VFEK L +P   WR+ G+I
Sbjct:   236 EDVPRDVL--EYVVFEKHLVNPYGSWRMHGKI 265

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|E2R6H1 MRPL45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 67/272 (24%), Positives = 124/272 (45%)

Query:    50 CLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFA--TAQPKAPAQ------ARQMGA 101
             CL K  G   W+R   +  +S++    +    +KRF   T +PK  ++      AR+ G 
Sbjct:    11 CLSKALGW--WSRQPVLVTQSTVV---VPVRTKKRFTPPTYEPKYKSEKEFMEYARKAGL 65

Query:   102 L--------KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAK 153
             +         + ++    I++ Y P E          ++G  +  + +  ++ S  +I K
Sbjct:    66 VIPPERLERPLHLACTAGIFDAYVPPEGDARLSS-LAKEGLAQRSEQLKKKVASQLSIRK 124

Query:   154 LRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
             +R+    +  + F  +A D++ E +  + N D   L   VTE  +  +  +IK +   WS
Sbjct:   125 IREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIKYKTVRWS 184

Query:   212 SVNWELIEP--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG- 268
              V  E +EP  ++++R   + L+    N  N ++ Q+T+    +Q    YD  G  + G 
Sbjct:   185 FV--ESLEPPQVVQVRC--SNLL----NQGN-IYGQVTVRMHTRQTLAIYDRFGRLMYGQ 235

Query:   269 -DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
              D  ++VL  +  VFEK L +P   WR+ G+I
Sbjct:   236 EDVPRDVL--EYVVFEKHLVNPYGSWRMHGKI 265

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|F1MEP0 MRPL45 "39S ribosomal protein L45, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 55/228 (24%), Positives = 103/228 (45%)

Query:    79 YLNEKRFATAQPKAPAQARQMGALK-VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 137
             Y  EK F     KA     Q    + + ++    I++ Y P E         +++G  + 
Sbjct:    50 YKTEKEFTEYARKAGLVIPQESLERPIHLACTASIFDAYVPPEGDARVSS-LSKEGLAQR 108

Query:   138 KDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 195
              + +   + S  +I ++++S   +  + F  +A D++ E +  + N D   L   VTE  
Sbjct:   109 TERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDRLHTLVTENC 168

Query:   196 YSALKNEIKQRESMWSSVNWELIEP--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAK 253
             +  +  +IK +   WS V  E +EP  ++++R   + L+       +  + Q+T+    +
Sbjct:   169 FPDMVWDIKYKTVRWSFV--ESLEPPQVVQVRC--SSLV-----TKSNAYGQVTVRMHTR 219

Query:   254 QKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
             Q    YD  G  + G  D  ++VL  +  VFEK L +P   WR+ G+I
Sbjct:   220 QTLAIYDRFGRLMYGQEDVPRDVL--EYVVFEKHLANPYGSWRMHGKI 265

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|Q3T142 MRPL45 "39S ribosomal protein L45, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 55/228 (24%), Positives = 103/228 (45%)

Query:    79 YLNEKRFATAQPKAPAQARQMGALK-VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 137
             Y  EK F     KA     Q    + + ++    I++ Y P E         +++G  + 
Sbjct:    50 YKTEKEFTEYARKAGLVIPQESLERPIHLACTASIFDAYVPPEGDARVSS-LSKEGLAQR 108

Query:   138 KDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 195
              + +   + S  +I ++++S   +  + F  +A D++ E +  + N D   L   VTE  
Sbjct:   109 TERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDRLHTLVTENC 168

Query:   196 YSALKNEIKQRESMWSSVNWELIEP--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAK 253
             +  +  +IK +   WS V  E +EP  ++++R   + L+       +  + Q+T+    +
Sbjct:   169 FPDMVWDIKYKTVSWSFV--ESLEPPQVVQVRC--SSLV-----TKSNTYGQVTVRMHTR 219

Query:   254 QKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
             Q    YD  G  + G  D  ++VL  +  VFEK L +P   WR+ G+I
Sbjct:   220 QTLAIYDRFGRLMYGQEDVPRDVL--EYVVFEKHLANPYGSWRMHGKI 265

GO:0005840 "ribosome" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
smart00978	147	smart00978, Tim44, Tim44 is an essential component	3e-24
pfam04280	146	pfam04280, Tim44, Tim44-like domain	4e-23
COG4395	281	COG4395, COG4395, Uncharacterized protein conserve	2e-04

>gnl|CDD|214950 smart00978, Tim44, Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane

 Score = 95.5 bits (238), Expect = 3e-24
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 147 SAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQR 206
            A    K    G+  ++F   A D +  I      GD  +LR+ +T +MY+ L  +I +R
Sbjct: 2   KALREIKRIDPGFDTERFLEGAKDAFPMIQEAWDRGDLETLRELLTPEMYNELAAQIAER 61

Query: 207 ESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTV 266
           E+    V  + +  I  +    A L      D       +T+ F  +Q     D+KG  V
Sbjct: 62  EARGLFVENK-LLDIDVVVLDAALLEAWQEGD----GAVITVRFHGQQIDVTRDAKGGVV 116

Query: 267 AGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 297
            G + K     ++W F + L +    WRL G
Sbjct: 117 VGGEDKPKEFTEVWTFTRDL-NGDPNWRLSG 146

Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region. Length = 147

>gnl|CDD|202957 pfam04280, Tim44, Tim44-like domain

 Score = 92.3 bits (230), Expect = 4e-23
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 147 SAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQR 206
           +A    K     +  ++F   A + Y+ I    A GD  +LR+ +T ++Y      I +R
Sbjct: 2   AALRAIKAADPSFDVEEFLEGAREAYEMIQEAWARGDLETLRELLTPEVYEEFAAAIAER 61

Query: 207 ESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTV 266
           E+   + +  ++          A L+             +T+ F+A+      D+ G  V
Sbjct: 62  EAQGLTNDSTIV------GIRDAELLEAKMEGD---EAVVTVRFVAQLISVTDDASGEVV 112

Query: 267 AGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 297
            GD  + V V ++W FE+ L  P   WRL G
Sbjct: 113 EGDPDEPVEVTEVWTFERDLGSPDPNWRLVG 143

Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane. Length = 146

>gnl|CDD|226830 COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
            +F   A   Y+ I      GD+ +LR+ +T ++   L+ EI +RES             
Sbjct: 150 ARFLNGARAAYEMIQQAYGAGDRKTLRELLTPEVMEYLEAEIAERES------------- 196

Query: 222 IKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
            K  T ++  + + + D+ +  V       T+    +      D  G  V GD  K    
Sbjct: 197 -KGETNQSSFVTILQADIARADVEGDEDYATVAIRYQGIDVTRDRSGKVVDGDPDKPEEF 255

Query: 277 RDIWVFEKSLFHPGAYWRLCG 297
            ++W F +        W+L  
Sbjct: 256 AELWTFTRDTGSRDPNWKLAA 276

Length = 281

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
KOG4599	379	consensus Putative mitochondrial/chloroplast ribos	100.0
PF04280	147	Tim44: Tim44-like domain; InterPro: IPR007379 Tim4	99.98
TIGR00984	378	3a0801s03tim44 mitochondrial import inner membrane	99.91
COG4395	281	Uncharacterized protein conserved in bacteria [Fun	99.89
PF07961	235	MBA1: MBA1-like protein; InterPro: IPR024621 Mba1	99.88
KOG2580	459	consensus Mitochondrial import inner membrane tran	99.8
KOG4599	379	consensus Putative mitochondrial/chloroplast ribos	97.12
PF13355	117	DUF4101: Protein of unknown function (DUF4101)	95.59
PF12893	116	Lumazine_bd_2: Putative lumazine-binding; PDB: 3BL	94.24
PF12870	111	Lumazine_bd: Lumazine-binding domain; InterPro: IP	87.52

>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-39  Score=305.35  Aligned_cols=248  Identities=18%  Similarity=0.257  Sum_probs=218.4

Q ss_pred             cccccccccccccccccc---cccCCCCCCccCccceeeceeccccccccccc-----ccCccCCCC--chhhhhcccee
Q 022189           34 SGVSIVPEIYSQNISSCL---CKDHGALPWTRGSTMTLRSSLAPKSLLYLNEK-----RFATAQPKA--PAQARQMGALK  103 (301)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~--~~~~r~~~~~~  103 (301)
                      -++++.++.-.-. .++|   ||..+|           .|+...++|+.....     +.++.+.++  ..+||.|+++|
T Consensus        39 qn~Ip~~~~d~l~-t~~~f~~f~~l~~-----------~kfe~~d~p~~~~k~~~i~kek~k~~~~a~~v~~Pr~~ne~~  106 (379)
T KOG4599|consen   39 QNFIPDPENDSLN-TKEWFPSFKNLSG-----------AKFESGDDPDPILKRTIISKEKMKSANKAGLVIPPRKWNERP  106 (379)
T ss_pred             hhhCcchhccCCC-ChhhhhhhhccCc-----------ccccccCCccccccccchhhhhhccccccccccCCccccccc
Confidence            4555555433322 5666   888888           889999999887633     344444443  46689999999


Q ss_pred             eEeeccCcccccCCCCCCCCcccccccccchhhhHHHHHHHHhHHHHHHHHHh----CCCChHHHHHHHHHHHHHHHHHH
Q 022189          104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK----SGYSKQKFYTEAVDLYKEINTLM  179 (301)
Q Consensus       104 i~~~s~g~I~epyvPp~~~~~~~~~~t~~g~~~~~~~l~~~~ks~~~i~~irk----~~Fd~~~F~~~Ak~iy~~I~~A~  179 (301)
                      |+++|+|+|||+||||+|++. .+.++..|+.+..+.+.+..++.++++.+++    ..|+.++|-+.|+++|+++|.++
T Consensus       107 i~f~~~~gIfD~yVPPegdg~-~~~l~skg~~~~~~~~~k~~~~q~sir~i~~k~~~~~F~ik~f~~kakDifIqaH~~l  185 (379)
T KOG4599|consen  107 IHFSCTGGIFDAYVPPEGDGK-KSILSSKGLIQKTEILEKTVASQMSIRRIRDKDEIENFEIKDFGAKAKDIFIQAHLCL  185 (379)
T ss_pred             eEEEeecccccccCCCCCCcc-cchhcCcchhHHHHHHHHHHHHHhhhhhhccCCcccceeccccchHhHHHHHHHHHHH
Confidence            999999999999999999999 7779999999999999999999999999997    58999999999999999999999


Q ss_pred             HcCCHHHHHHhhcH---------------HHHHHHHHHHHHhhccCCceeeeeecccccceEEEEEEeeecccccCCCEE
Q 022189          180 ANGDKTSLRKAVTE---------------KMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFV  244 (301)
Q Consensus       180 a~gD~~~Lr~lvTe---------------~~y~~l~~~Ik~R~~~g~~v~W~lv~~le~~rvv~~rli~I~~~d~~~~~~  244 (301)
                      ++.|...+..++||               .||+.|...++.     .+++|+++.+++|+++|++||.+..+. ..+.++
T Consensus       186 ~~~de~kays~l~e~~fvhl~~~~~t~~~~flp~m~~k~K~-----~~vR~~~vs~leP~~vv~~rc~d~~~~-s~n~~a  259 (379)
T KOG4599|consen  186 NNSDEMKAYSFLTESEFVHLKCPSITNLLHFLPVMQEKVKK-----GTVRWSFVSVLEPSRVVYVRCDDDNDK-SGNFIA  259 (379)
T ss_pred             hcChHHHHHHHhhccccccccCCCccchhhhccccchhhcc-----CceeEEEEeecccceeEEEEecCCccc-ccccce
Confidence            99999999999999               999999988654     389999999999999999999887665 368999


Q ss_pred             EEEEEEEeEEeeeEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEee
Q 022189          245 QLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK  300 (301)
Q Consensus       245 QVTVRf~s~Q~~~iyD~~GrlV~Gs~d~~~dV~EyWVFeR~l~~~~~~WrL~gki~  300 (301)
                      |||||+|++|.+++||++|+++.|+++..+||+||+||+.|+.+.++.||++++|.
T Consensus       260 qitvRkh~~q~Lavydrfg~lm~g~E~i~KDv~eyvvfe~hi~~~~g~wr~h~kiv  315 (379)
T KOG4599|consen  260 QITVRKHTRQCLAVYDRFGRLMFGSEDIKKDVLEYVVFENHIQNAYGRWRLHKKIV  315 (379)
T ss_pred             eeehHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHhhhhhhhhhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999885

>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []

Probab=99.98  E-value=3.5e-31  Score=224.01  Aligned_cols=144  Identities=30%  Similarity=0.460  Sum_probs=124.0

Q ss_pred             HHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHhhccCCceeeeeecccccce
Q 022189          148 AYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMR  225 (301)
Q Consensus       148 ~~~i~~irk--~~Fd~~~F~~~Ak~iy~~I~~A~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~~v~W~lv~~le~~r  225 (301)
                      +.+++.|++  |+||+..|+++|+++|..|++||++||++.|+++||+++|+.|..+++.+...|.+      +..+.+.
T Consensus         2 a~a~~~i~~~dp~Fd~~~F~~~ak~~f~~i~~A~~~~D~~~l~~~~t~~~~~~~~~~i~~~~~~g~~------~~~~~v~   75 (147)
T PF04280_consen    2 ASAIKQIKQRDPGFDPAAFLEEAKEAFLPIQEAWAKGDLEALRPLLTEELYERLQAEIKARRSRGEV------NDPEIVR   75 (147)
T ss_dssp             HHHHCCHHHH-TT--HHHHHHHHHHTHHHHHHHHHHT-HHHHHHHB-HHHHHHHHHHHHHHHHTTEE------EEEEEEE
T ss_pred             chHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhCHHHHHHHHHHHHHHHHcCCc------ccceEEE
Confidence            457788886  99999999999999999999999999999999999999999999999999877754      5566777


Q ss_pred             EEEEEEeeecccccCCCEEEEEEEEEeEEeeeEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEee
Q 022189          226 TLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK  300 (301)
Q Consensus       226 vv~~rli~I~~~d~~~~~~QVTVRf~s~Q~~~iyD~~GrlV~Gs~d~~~dV~EyWVFeR~l~~~~~~WrL~gki~  300 (301)
                      +++++++++...   +.+++|||+|+++|++|++|++|++++|+++++..+.|||+|+|++++++++|+|+|+.+
T Consensus        76 i~~~~i~~~~~~---~~~~~vtv~f~~~~~~~~~d~~G~ii~G~~~~~~~~~e~W~f~r~~~~~~~~W~L~~i~q  147 (147)
T PF04280_consen   76 IDNAEIVEAEQE---GNFDQVTVRFRSQQIDYVDDKDGEIIEGDPDKIQEFTEYWTFERDLGSPNPNWRLAGIQQ  147 (147)
T ss_dssp             EEEEEEEEEEEE---TTEEEEEEEEEEEEEEEEETTTCTCCCCSTTS-EEEEEEEEEEE--TTCCCTEEEEEEE-
T ss_pred             EEEEEeeeceee---CCEEEEEEEEEEEEEEEEECCCCcEeeCCCCCceEEEEEEEEEEeCCCCCCCEEEEEEeC
Confidence            888888776654   799999999999999999999999999999999999999999999999999999999864

Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.

>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit

Probab=99.91  E-value=1.3e-23  Score=203.28  Aligned_cols=147  Identities=21%  Similarity=0.303  Sum_probs=126.5

Q ss_pred             HHHHHhHHHHHHHHHh--CCCChHHHHHHHHHH-HHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHhhccCCceeeee
Q 022189          141 IILELKSAYAIAKLRK--SGYSKQKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL  217 (301)
Q Consensus       141 l~~~~ks~~~i~~irk--~~Fd~~~F~~~Ak~i-y~~I~~A~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~~v~W~l  217 (301)
                      +..+...+.+|++|+.  |+||+..|+.+|+.+ |++|.+||++||.+.|++||++.+|+.|...|++|...|.+++-  
T Consensus       221 lF~ete~a~~l~eIk~~DPsFd~~~Fl~gar~aI~p~ILeAf~kGD~e~LK~~lse~vy~~f~a~I~qr~~~G~~~d~--  298 (378)
T TIGR00984       221 MFSETEVSEVLTEFKKIDPTFDKEHFLRFLREYIVPEILEAYVKGDLEVLKSWCSEAPFSVYATVVKEYKKMGVSTKG--  298 (378)
T ss_pred             ccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhCHHHHHHHHHHHHHHHHCCCeeee--
Confidence            4556777889999996  999999999999988 89999999999999999999999999999999999999986543  


Q ss_pred             ecccccceEEEEEEeeeccccc-C-CCEEEEEEEEEeEEeeeEEcCC-CceecCCCCCeeeeeEEEEEEEeCCC----CC
Q 022189          218 IEPIIKMRTLRARLIGVDRNDL-N-KVFVQLTLEFLAKQKFEAYDSK-GVTVAGDKTKEVLVRDIWVFEKSLFH----PG  290 (301)
Q Consensus       218 v~~le~~rvv~~rli~I~~~d~-~-~~~~QVTVRf~s~Q~~~iyD~~-GrlV~Gs~d~~~dV~EyWVFeR~l~~----~~  290 (301)
                             ++|+++-++|..+.+ + ++.+.|+|+|.++|+.|++|++ |+||+|+++++..+.+.|+|+|+++.    +.
T Consensus       299 -------~iL~I~~veI~~ak~~e~~~~pviiV~F~aQqI~~vRd~~tGeVVeGd~d~I~~v~yvWtF~Rd~~~~~~~~~  371 (378)
T TIGR00984       299 -------RILDIRGVEIASGKLLEPGDIPVLIVTFRAQEINVTKNAKSGEVVAGDPDNIQRINYAWVFTRDVEELDNPET  371 (378)
T ss_pred             -------EEeeecCeEEEEEEecCCCCeEEEEEEEEEEEEEEEEcCCCCceeeCCCCceeEEEEEEEEEEcccccCCCCC
Confidence                   344444444444333 2 4689999999999999999999 99999999999999999999999863    56


Q ss_pred             CCeEEE
Q 022189          291 AYWRLC  296 (301)
Q Consensus       291 ~~WrL~  296 (301)
                      +.|||.
T Consensus       372 ~~Wrl~  377 (378)
T TIGR00984       372 LGWKIL  377 (378)
T ss_pred             Cceeec
Confidence            789985

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.

>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.89  E-value=5.3e-23  Score=190.98  Aligned_cols=144  Identities=20%  Similarity=0.272  Sum_probs=125.9

Q ss_pred             HHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHhhccCCceeeeeecccccc
Q 022189          147 SAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKM  224 (301)
Q Consensus       147 s~~~i~~irk--~~Fd~~~F~~~Ak~iy~~I~~A~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~~v~W~lv~~le~~  224 (301)
                      ...+++.+.+  |.|++..|+..|+.+|.+|++||+.+|.++|++|+|+++|+.|++++.++..+|.++.         .
T Consensus       133 ~~ag~~~v~~~~~~f~p~~fl~~a~~a~~~Iq~a~~~~D~~tL~~L~tpev~~~~~~e~~e~~~~G~~~~---------s  203 (281)
T COG4395         133 LAAGARAVHNADPSFDPARFLNGARAAYEMIQQAYGAGDRKTLRELLTPEVMEYLEAEIAERESKGETNQ---------S  203 (281)
T ss_pred             cccchhhhhcCCcccchhHHHHHHHHHHHHHHHHhhhccHHHHHHhcCHHHHHHHHHHHhhhhhcCcccc---------c
Confidence            3445666775  9999999999999999999999999999999999999999999999999988887633         2


Q ss_pred             eEEEEEEeeecccccCCCEEEEEEEEEeEEeeeEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022189          225 RTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  299 (301)
Q Consensus       225 rvv~~rli~I~~~d~~~~~~QVTVRf~s~Q~~~iyD~~GrlV~Gs~d~~~dV~EyWVFeR~l~~~~~~WrL~gki  299 (301)
                      .-|..-..+|...+..++.+++||+|..+-+..++|+.|++|+||++++.++.|+|+|+|..++.+++|.|.++=
T Consensus       204 sfv~~~~~di~~a~~~~~~~~atv~~~~~~i~~~~dr~G~vVdGd~~~~~e~~ElWTFtR~~~s~~p~W~LaaIq  278 (281)
T COG4395         204 SFVTILQADIARADVEGDEDYATVAIRYQGIDVTRDRSGKVVDGDPDKPEEFAELWTFTRDTGSRDPNWKLAAIQ  278 (281)
T ss_pred             eecchhhhhhhhccccCCceEEEEEEEeeeeeeeccccCceecCCCCcchhhhhheeeeccCCCCCCCceEEeee
Confidence            223333345566666789999999999999999999999999999999999999999999999999999999864

>PF07961 MBA1: MBA1-like protein; InterPro: IPR024621 Mba1 is an inner membrane protein that is part of the mitochondrial protein export machinery [, ]

Probab=99.88  E-value=1.9e-21  Score=177.89  Aligned_cols=187  Identities=24%  Similarity=0.354  Sum_probs=157.7

Q ss_pred             eeeEeeccCcccccCCCCCCCCccccccc-c-cchhhhHHHHHHHHhHHHHHHHHHh-C--CCChHHHHHHHHHHHHHHH
Q 022189          102 LKVSISSPGFIYEPYAPREAIPFWRRWFT-R-DGWRRTKDDIILELKSAYAIAKLRK-S--GYSKQKFYTEAVDLYKEIN  176 (301)
Q Consensus       102 ~~i~~~s~g~I~epyvPp~~~~~~~~~~t-~-~g~~~~~~~l~~~~ks~~~i~~irk-~--~Fd~~~F~~~Ak~iy~~I~  176 (301)
                      .+|.+...|...|+||||.-   +.++|+ | ..|+..+.++...+.+.+.+...|. .  .+.-..+.+.|.+.|..++
T Consensus         8 ~~~~~~~iGv~~~~yipps~---~ps~~~~P~~~~~~l~rr~~~~~~Nt~~i~~fr~~~g~k~~f~~wk~~AiE~yv~~N   84 (235)
T PF07961_consen    8 SQFPIRHIGVMADTYIPPSF---LPSPFTSPKVWWKLLIRRLYMFALNTVSIAKFRRQTGKKPRFNEWKNKAIELYVQMN   84 (235)
T ss_pred             ccCCcccceeccccccChhh---ccCcccChhHHHHHHHHHHHHHhhhhheeeehhhhcCCCCchhHHHHHHHHHHHHHH
Confidence            36788889999999999965   344443 3 3477778888888888888888775 3  3556789999999999999


Q ss_pred             HHHHcCCHHHHHHhhcHHHHHHHHHHHHHhhccCCceeeeeecccccceEEEEEEeeecccccCCCEEEEEEEEEeEEee
Q 022189          177 TLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKF  256 (301)
Q Consensus       177 ~A~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~~v~W~lv~~le~~rvv~~rli~I~~~d~~~~~~QVTVRf~s~Q~~  256 (301)
                      +|||+||.+.|++.|+..+++.|.+.+++++. +.+++|+|+...+.|++|+.+.+.++..  ...+.|++|+|+|+|++
T Consensus        85 kaFA~~~~~~L~~~c~~~v~~sL~~R~~~~P~-~~kl~W~L~k~~~~PKvvs~~~~~~p~~--~~~~vQ~Vvk~~TkQ~l  161 (235)
T PF07961_consen   85 KAFAAGDLDKLRKICSSWVYESLAARIKQRPK-NSKLDWKLVKYNKNPKVVSFQAIPIPGG--PLEIVQFVVKFDTKQRL  161 (235)
T ss_pred             HHHHhccHHHHHHHhhHHHHHHHHHHHHhCCC-CCeeeEEEEEecCCCeEEEEeeeecCCC--CCeEEEEEEEEeeeEEE
Confidence            99999999999999999999999999999985 4589999999999999999999888765  34699999999999999


Q ss_pred             eEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022189          257 EAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  299 (301)
Q Consensus       257 ~iyD~~GrlV~Gs~d~~~dV~EyWVFeR~l~~~~~~WrL~gki  299 (301)
                      ..+|+.+..+++.   .+||+||.||.++..  .+.|+|+|++
T Consensus       162 i~~~k~~~~~~~~---e~dvveyiV~~~d~~--t~e~~l~Gsv  199 (235)
T PF07961_consen  162 IKVDKGSEKVEKK---ERDVVEYIVFQCDPW--TNEWVLWGSV  199 (235)
T ss_pred             EEeccccccCCcc---ccceeeeEEEEEeCC--CCcEEEEEEe
Confidence            8899876655433   569999999998754  4599999987

It binds to the large subunit of mitochondrial ribosomes and cooperates with the C-terminal ribosome-binding domain of Oxa1, which is a central component of the insertion machinery of the inner membrane. In the absence of both Mba1 and the C terminus of Oxa1, mitochondrial translation products fail to be properly inserted into the inner membrane and serve as substrates of the matrix chaperone Hsp70 []. It is proposed that Mba1 functions as a ribosome receptor that cooperates with Oxa1 in the positioning of the ribosome exit site to the insertion machinery of the inner membrane [].

>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.9e-19  Score=173.97  Aligned_cols=149  Identities=22%  Similarity=0.322  Sum_probs=128.6

Q ss_pred             HHHHHHHhHHHHHHHHHh--CCCChHHHHHHHHHHH-HHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHhhccCCceee
Q 022189          139 DDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLY-KEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW  215 (301)
Q Consensus       139 ~~l~~~~ks~~~i~~irk--~~Fd~~~F~~~Ak~iy-~~I~~A~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~~v~W  215 (301)
                      ..|..+......+.+|++  |+||.++|+..+++.+ ++|.+|+-.||++.|++||++..|+.+.+.+++.+..|-.   
T Consensus       293 ~g~fsktE~Sev~tei~~iDPsF~~~~Flr~~ee~IiPnVLeAyvkGD~evLK~wcsea~~~~~aa~~keykk~gv~---  369 (459)
T KOG2580|consen  293 GGLFSKTEMSEVLTEIKKIDPSFDKEDFLRECEEYIIPNVLEAYVKGDLEVLKKWCSEAPFSQLAAPIKEYKKHGVY---  369 (459)
T ss_pred             cccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHHHHHhcCee---
Confidence            446667777778888986  9999999999998755 6799999999999999999999999999999999877642   


Q ss_pred             eeecccccceEEEEEEeeecccccCCCEEEEEEEEEeEEeeeEEcCCCceecCCCCCeeeeeEEEEEEEeCC--CC--CC
Q 022189          216 ELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLF--HP--GA  291 (301)
Q Consensus       216 ~lv~~le~~rvv~~rli~I~~~d~~~~~~QVTVRf~s~Q~~~iyD~~GrlV~Gs~d~~~dV~EyWVFeR~l~--~~--~~  291 (301)
                            .+-++|+++=++|....+-.+.+.+.|.|++++++|++|.+|+||+|++|++..|.+.|||+|+..  ++  ++
T Consensus       370 ------~d~kILdI~~Vdia~~KmM~d~PVlIitFqaQeI~~vRd~~GevveGd~d~i~~v~y~wvl~rd~~El~~d~~~  443 (459)
T KOG2580|consen  370 ------FDSKILDIRGVDIASGKMMEDGPVLIITFQAQEIMCVRDAKGEVVEGDPDKILRVYYAWVLCRDQDELNPDEYA  443 (459)
T ss_pred             ------ecceeeeeccchhHHhhhhccCCEEEEEEeeEEEEEEEcCCCceecCCCCceeeEEeeeeeeccHhhcCcchhh
Confidence                  355677777677666666679999999999999999999999999999999999999999999754  34  77


Q ss_pred             CeEEE
Q 022189          292 YWRLC  296 (301)
Q Consensus       292 ~WrL~  296 (301)
                      .|||.
T Consensus       444 ~WRLl  448 (459)
T KOG2580|consen  444 AWRLL  448 (459)
T ss_pred             hHHHH
Confidence            89974

>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.00012  Score=70.54  Aligned_cols=198  Identities=20%  Similarity=0.205  Sum_probs=135.4

Q ss_pred             ccccccccccccccccccccccCCCCCCccCccceeeceecccccccccccccCccCCCCchhhhhccceeeEeeccCcc
Q 022189           33 SSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFI  112 (301)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~s~g~I  112 (301)
                      +..+.|..|..   +++.+|..+-      +.+..++.|+...+-.+|+++             -+-|.++..+-|   +
T Consensus       182 H~~l~~~de~k---ays~l~e~~f------vhl~~~~~t~~~~flp~m~~k-------------~K~~~vR~~~vs---~  236 (379)
T KOG4599|consen  182 HLCLNNSDEMK---AYSFLTESEF------VHLKCPSITNLLHFLPVMQEK-------------VKKGTVRWSFVS---V  236 (379)
T ss_pred             HHHHhcChHHH---HHHHhhcccc------ccccCCCccchhhhccccchh-------------hccCceeEEEEe---e
Confidence            45666666655   5666666643      677777888888888888755             233444555555   4


Q ss_pred             cccCCCCCCCCcccccccccchhhhHHHHHHHHhHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhc
Q 022189          113 YEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVT  192 (301)
Q Consensus       113 ~epyvPp~~~~~~~~~~t~~g~~~~~~~l~~~~ks~~~i~~irk~~Fd~~~F~~~Ak~iy~~I~~A~a~gD~~~Lr~lvT  192 (301)
                      +|||.-     -+.+.+.          .-.++.+.+|+..+|+-      +. +|.++|..++.++..+.  ..++=++
T Consensus       237 leP~~v-----v~~rc~d----------~~~~s~n~~aqitvRkh------~~-q~Lavydrfg~lm~g~E--~i~KDv~  292 (379)
T KOG4599|consen  237 LEPSRV-----VYVRCDD----------DNDKSGNFIAQITVRKH------TR-QCLAVYDRFGRLMFGSE--DIKKDVL  292 (379)
T ss_pred             ccccee-----EEEEecC----------CcccccccceeeehHHH------HH-HHHHHHHHHHHHhccCc--ccccchh
Confidence            555432     0111110          00112445555555441      11 88899999999999888  6667777


Q ss_pred             HHHHHHHHHHHHHhhccCCceeeeeecccccceEEEEEEeeecccccCCCEEEEEEEEEeEEeeeEEcCCCceecCCCCC
Q 022189          193 EKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTK  272 (301)
Q Consensus       193 e~~y~~l~~~Ik~R~~~g~~v~W~lv~~le~~rvv~~rli~I~~~d~~~~~~QVTVRf~s~Q~~~iyD~~GrlV~Gs~d~  272 (301)
                      +  |..|..+|+++..+|. ++|++++...+++              .+.+.++++-+.+.+....|+..|.+..|+.  
T Consensus       293 e--yvvfe~hi~~~~g~wr-~h~kivp~wi~~k--------------qk~~~tl~l~~lt~~~~~~~~~~~~~~~tek--  353 (379)
T KOG4599|consen  293 E--YVVFENHIQNAYGRWR-LHKKIVPPWIPAK--------------QKAYKTLMLFILTMEKSEAYPAGPKEAVTEK--  353 (379)
T ss_pred             H--HHHHHHhhhhhhhhhh-hcccccCcccccc--------------ccchheEEeehhccCchhhcccCCccchhhh--
Confidence            7  9999999999999884 9999876644333              2578999999999999999999888777653  


Q ss_pred             eeeeeEEEEEEEeCCCCCCCeEEEEEeeC
Q 022189          273 EVLVRDIWVFEKSLFHPGAYWRLCGRIKI  301 (301)
Q Consensus       273 ~~dV~EyWVFeR~l~~~~~~WrL~gki~~  301 (301)
                         +.|.-++|..+......|+|++.+.+
T Consensus       354 ---~ke~~~~e~~~~~t~~~~~lk~~~kI  379 (379)
T KOG4599|consen  354 ---FKECILKENDVEITILKGILKPQLKI  379 (379)
T ss_pred             ---hhhhhhhcccccccchhcccchhhcC
Confidence               45555588888777889999987754

>PF13355 DUF4101: Protein of unknown function (DUF4101)

Probab=95.59  E-value=0.35  Score=39.97  Aligned_cols=98  Identities=16%  Similarity=0.206  Sum_probs=59.2

Q ss_pred             cCCHHHHHHhhcHHHHHHHHHHHHHhhccCCceeeeeecccccceEEEEEEeeecccccCCCEEEEEEEEEeEEeeeEEc
Q 022189          181 NGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYD  260 (301)
Q Consensus       181 ~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~~v~W~lv~~le~~rvv~~rli~I~~~d~~~~~~QVTVRf~s~Q~~~iyD  260 (301)
                      ..+.+.|.+++++.|++........-...|.  +|++.        +.+++..|....  ..-.+++|.-.-.-....||
T Consensus        19 ~~~~~~L~~vl~g~ll~~w~~~a~~~~~~g~--y~~y~--------~~~~I~sv~~~~--~~~~ra~v~a~v~E~~~l~~   86 (117)
T PF13355_consen   19 PHDIDSLSEVLTGPLLSQWQDRAQWLKANGW--YWEYD--------HKLKIDSVEVFS--DSPNRATVEATVTESAQLYD   86 (117)
T ss_pred             CcchhHHHHHhhHHHHHHHHHHHHHHHHcCC--eEEEe--------eeeEEEEEEEcC--CCCCeEEEEEEEEEEEEEEe
Confidence            3567799999999999999988877666553  56653        122222222221  12334444444455667788


Q ss_pred             CCCceecC-CCCCeeeeeEEEEEEEeCCCCCCCeEEEE
Q 022189          261 SKGVTVAG-DKTKEVLVRDIWVFEKSLFHPGAYWRLCG  297 (301)
Q Consensus       261 ~~GrlV~G-s~d~~~dV~EyWVFeR~l~~~~~~WrL~g  297 (301)
                       .|++..+ +......|.+  .|.|.    ++.|+|+.
T Consensus        87 -~g~~~~~~s~~~~~~vrY--~L~r~----~~~WkI~d  117 (117)
T PF13355_consen   87 -NGQPDNNPSYDSTLRVRY--ELVRQ----NGQWKITD  117 (117)
T ss_pred             -CCccccCCCCCCcEEEEE--EEEEc----CCEEEecC
Confidence             8998876 4444445544  34444    56799963

>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C

Probab=94.24  E-value=0.57  Score=37.75  Aligned_cols=93  Identities=15%  Similarity=0.200  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHHH--------------HHHHHHHHHHhh---ccCCceeeeeecccccceEEEE
Q 022189          167 EAVDLYKEINTLMANGDKTSLRKAVTEKM--------------YSALKNEIKQRE---SMWSSVNWELIEPIIKMRTLRA  229 (301)
Q Consensus       167 ~Ak~iy~~I~~A~a~gD~~~Lr~lvTe~~--------------y~~l~~~Ik~R~---~~g~~v~W~lv~~le~~rvv~~  229 (301)
                      ..++......+++.+||.+.|++.+.|++              .+++...++.+.   ..+.            .+.-..
T Consensus         5 ~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------------~~~~~i   72 (116)
T PF12893_consen    5 AIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQ------------ERKESI   72 (116)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SST------------T-EEEE
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCC------------CceeEE
Confidence            34556666778899999999999999887              356667777652   1111            111111


Q ss_pred             EEeeecccccCCCEEEEEEEEEeEEeeeEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022189          230 RLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  299 (301)
Q Consensus       230 rli~I~~~d~~~~~~QVTVRf~s~Q~~~iyD~~GrlV~Gs~d~~~dV~EyWVFeR~l~~~~~~WrL~gki  299 (301)
                      ..++|     .++.+.+.|.+....                   ..+.||.+|.|.    ++.|+|..|+
T Consensus        73 ~~i~i-----~g~~A~a~v~~~~~~-------------------~~~~d~~~L~K~----dg~WkIv~k~  114 (116)
T PF12893_consen   73 LSIDI-----DGDVASAKVEYEFPG-------------------FWFVDYFTLVKT----DGGWKIVSKV  114 (116)
T ss_dssp             EEEEE-----ETTEEEEEEEEEEET-------------------EEEEEEEEEEEE----TTEEEEEEEE
T ss_pred             EEEEE-----ECCEEEEEEEEEECC-------------------CceEEEEEEEEE----CCEEEEEEEe
Confidence            22333     357888888775321                   257999999997    7899999986

>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria

Probab=87.52  E-value=10  Score=29.11  Aligned_cols=31  Identities=13%  Similarity=0.145  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHHHHH
Q 022189          167 EAVDLYKEINTLMANGDKTSLRKAVTEKMYS  197 (301)
Q Consensus       167 ~Ak~iy~~I~~A~a~gD~~~Lr~lvTe~~y~  197 (301)
                      ..+++-.....|+.+||.+....++++..-.
T Consensus         8 ~P~~~v~~f~~al~~gd~~~a~~~~~~~~~~   38 (111)
T PF12870_consen    8 TPEEVVKNFFDALKNGDYEKAYAYLSPESRE   38 (111)
T ss_dssp             -HHHHHHHHHHHHCTT-HHHHHHTB--TT--
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHhhCccccc
Confidence            3456677788899999999999999988774

Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
2cw9_A	194	Translocase of inner mitochondrial membrane; struc	4e-17
3qk9_A	222	Mitochondrial import inner membrane translocase S	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13 Length = 194

 Score = 76.8 bits (188), Expect = 4e-17
 Identities = 29/162 (17%), Positives = 63/162 (38%), Gaps = 14/162 (8%)

Query: 139 DDIILELKSAYAIAKLRK--SGYSKQKFYTEAV-DLYKEINTLMANGDKTSLRKAVTEKM 195
             +  + + +  + ++ +    + K +F  +   D+   +   M +G+   L+    E  
Sbjct: 30  GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEAT 89

Query: 196 YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK 255
           YS L + I+Q +++    +   I  I  +     +++             L + F A+  
Sbjct: 90  YSQLAHPIQQAKALGLQFHSR-ILDIDNVDLAMGKMVEQ--------GPVLIITFQAQLV 140

Query: 256 FEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL--FHPGAYWRL 295
               + KG  V GD  K + +  +W   +     +P A WRL
Sbjct: 141 MVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL 182

>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A Length = 222

 Score = 56.9 bits (137), Expect = 7e-10
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 13/158 (8%)

Query: 144 ELKSAYAIAKLRKSGYSKQKFYTEAVDLY-KEINTLMANGDKTSLRKAVTEKMYSALKNE 202
           E    Y+  KL    +S + F     +    EI      GD   L+K  +E  ++    +
Sbjct: 60  ESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQ 119

Query: 203 IKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSK 262
            K  +      +  +++ I  +  + A+L+             L +   A++       K
Sbjct: 120 QKIFKEQDVYADGRILD-IRGVEIVSAKLLAPQDI------PVLVVGCRAQEINLYRKKK 172

Query: 263 -GVTVAGDKTKEVLVRDIWVFEKSL----FHPGAYWRL 295
            G   AGD+   ++     VF +            W++
Sbjct: 173 TGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWKI 210

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 33/271 (12%), Positives = 76/271 (28%), Gaps = 77/271 (28%)

Query: 49  SCL----CKDHGALP-------WTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQAR 97
           + +    C  +           W     + L++  +P+++L + +K      P   +++ 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFW-----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 98  QMGALKVSISSPG------FIYEPYAPREAIPF---WRRW----F---------TRDGWR 135
               +K+ I S           +PY     +             F         TR    
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--- 274

Query: 136 RTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTE-- 193
           +   D +    + +          +      E   L  +      +     L + V    
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTP----DEVKSLLLKY----LDCRPQDLPREVLTTN 326

Query: 194 ----KMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLE 249
                + +    +       W  VN + +  II+  +L      ++  +  K+F +L++ 
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNV----LEPAEYRKMFDRLSV- 380

Query: 250 FLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW 280
                 F         +       +L   IW
Sbjct: 381 ------FP----PSAHI----PTILLSL-IW 396

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
2cw9_A	194	Translocase of inner mitochondrial membrane; struc	99.97
3qk9_A	222	Mitochondrial import inner membrane translocase S	99.94
3fka_A	120	Uncharacterized NTF-2 like protein; structural gen	90.14
3duk_A	125	NTF2-like protein of unknown function; structural	86.0
3blz_A	128	NTF2-like protein of unknown function; structural	85.85

>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13

Probab=99.97  E-value=5.1e-31  Score=233.85  Aligned_cols=150  Identities=18%  Similarity=0.280  Sum_probs=130.2

Q ss_pred             HHHHHhHHHHHHHHHh--CCCChHHHHHHHHHH-HHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHhhccCCceeeee
Q 022189          141 IILELKSAYAIAKLRK--SGYSKQKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL  217 (301)
Q Consensus       141 l~~~~ks~~~i~~irk--~~Fd~~~F~~~Ak~i-y~~I~~A~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~~v~W~l  217 (301)
                      +..+.+.+.++++|++  |+||++.|+++|+++ |.+|++||++||++.|++||||+||+.|.+++++|+.+|.++++++
T Consensus        32 ~f~~s~~~~~l~~i~~~dp~Fd~~~Fl~~ak~~iy~~Iq~A~~~gD~~~Lr~~~t~~~~~~~~~~i~~r~~~g~~~~~~~  111 (194)
T 2cw9_A           32 LFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI  111 (194)
T ss_dssp             TTHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCEE
T ss_pred             ccCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhcCHHHHHHHHHHHHHHHHCCCccccEE
Confidence            5578888999999997  999999999999998 8999999999999999999999999999999999999998766665


Q ss_pred             ecccccceEEEEEEeeecccccCCCEEEEEEEEEeEEeeeEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCC--eEE
Q 022189          218 IEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAY--WRL  295 (301)
Q Consensus       218 v~~le~~rvv~~rli~I~~~d~~~~~~QVTVRf~s~Q~~~iyD~~GrlV~Gs~d~~~dV~EyWVFeR~l~~~~~~--WrL  295 (301)
                      +. +.     ++.++++.   ..+..+++||+|+++|++|++|++|++|+|+++++.+|.|+|+|+|+++..+++  |+|
T Consensus       112 v~-i~-----~~el~~a~---~~~~~~~itV~f~~~~i~~~rd~~G~vveG~~~~~~~v~e~W~f~R~~~~~~p~~~W~L  182 (194)
T 2cw9_A          112 LD-ID-----NVDLAMGK---MVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL  182 (194)
T ss_dssp             EE-EE-----EEEEEEEE---EETTEEEEEEEEEEEEECEEECTTSCEEEECTTCCEEEEEEEEEEECTTCSCGGGCEEE
T ss_pred             EE-ec-----ccEEEEEE---EeCCeeEEEEEEEEEEEEEEECCCCCEecCCCCCceEEEEEEEEEEeCCCCCCCCCEEE
Confidence            42 22     33333332   224679999999999999999999999999999999999999999999876654  999


Q ss_pred             EEEe
Q 022189          296 CGRI  299 (301)
Q Consensus       296 ~gki  299 (301)
                      +|.=
T Consensus       183 ~~iq  186 (194)
T 2cw9_A          183 LDIS  186 (194)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9863

>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A

Probab=99.94  E-value=8.8e-27  Score=210.77  Aligned_cols=148  Identities=17%  Similarity=0.168  Sum_probs=121.2

Q ss_pred             HHHHhHHHHHHHHHh--CCCChHHHHHHHHHH-HHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHhhccCCceeeeee
Q 022189          142 ILELKSAYAIAKLRK--SGYSKQKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI  218 (301)
Q Consensus       142 ~~~~ks~~~i~~irk--~~Fd~~~F~~~Ak~i-y~~I~~A~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~~v~W~lv  218 (301)
                      ..+...+.+|++|++  |+|++.+|+++|++. |.+|++||++||.+.|++||++++|+.|.+.|++|.+.|.+++    
T Consensus        56 f~~te~a~~l~~Ik~~DPsF~~~~Fl~~a~~ai~p~Il~Af~~GD~~~Lk~llse~~y~~f~~~i~~r~~~G~~~d----  131 (222)
T 3qk9_A           56 FAETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYAD----  131 (222)
T ss_dssp             ----CCHHHHTTCC-----CCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHTTTEEEC----
T ss_pred             cCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHHCCCEee----
Confidence            345566788999986  999999999999988 5689999999999999999999999999999999999887543    


Q ss_pred             cccccceEEEEEEeeecccccC--CCEEEEEEEEEeEEeeeEEc-CCCceecCCCCCeeeeeEEEEEEEeCCCCC----C
Q 022189          219 EPIIKMRTLRARLIGVDRNDLN--KVFVQLTLEFLAKQKFEAYD-SKGVTVAGDKTKEVLVRDIWVFEKSLFHPG----A  291 (301)
Q Consensus       219 ~~le~~rvv~~rli~I~~~d~~--~~~~QVTVRf~s~Q~~~iyD-~~GrlV~Gs~d~~~dV~EyWVFeR~l~~~~----~  291 (301)
                           .++|+++-++|..+++.  +..+++||+|.++|+.|++| +.|+||+|+++++..+.|+|+|+|+++..+    +
T Consensus       132 -----~~il~I~~vdI~~a~~~~~~~~p~itV~f~aq~i~~~rd~k~GeVVeGd~d~i~~~~~~WtF~R~~~~~d~~~tp  206 (222)
T 3qk9_A          132 -----GRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETE  206 (222)
T ss_dssp             -----CEEEEEEEEEEEEEEECSSSCCEEEEEEEEEEEECCEEESTTCCCSSSCTTCCEEEEEEEEEEECCC--------
T ss_pred             -----eeEeeecceEEEEEEEecCCCceEEEEEEEEEEEEEEEeCCCCccccCCCCCceEEEEEEEEEEcCccCCCCCCC
Confidence                 44555555555555444  58899999999999999999 789999999999999999999999998544    7


Q ss_pred             CeEEEEE
Q 022189          292 YWRLCGR  298 (301)
Q Consensus       292 ~WrL~gk  298 (301)
                      +|+|.+.
T Consensus       207 ~WkL~ei  213 (222)
T 3qk9_A          207 GWKILEF  213 (222)
T ss_dssp             CEEEEEE
T ss_pred             CcEEehh
Confidence            8999985

>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}

Probab=90.14  E-value=1.3  Score=34.83  Aligned_cols=91  Identities=15%  Similarity=0.176  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHhhcHHH--------------HHHHHHHHHHhhcc-CCceeeeeecccccceEEEEEEe
Q 022189          168 AVDLYKEINTLMANGDKTSLRKAVTEKM--------------YSALKNEIKQRESM-WSSVNWELIEPIIKMRTLRARLI  232 (301)
Q Consensus       168 Ak~iy~~I~~A~a~gD~~~Lr~lvTe~~--------------y~~l~~~Ik~R~~~-g~~v~W~lv~~le~~rvv~~rli  232 (301)
                      .+++...-.+++.+||.+.|+...+|.+              .+++.. +...+.. +..         -..+++.   +
T Consensus        11 I~~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~~g~~~~~~~~~~~~-v~~~p~~~~~~---------~~~~i~~---I   77 (120)
T 3fka_A           11 LTALVETYVMAMTRGDRPALERIFFGKASEVGHYEGELLWNSRDAFIA-MCEDAADAETD---------PFWAISS---V   77 (120)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEETTEEEEEEHHHHHH-HHHHHCCSSCC---------CCEEEEE---E
T ss_pred             HHHHHHHHHHHHHhcCHHHHHhhCCCCeEEEEecCCcEEEcCHHHHHh-hcCCccCCCCC---------ceEEEEE---E
Confidence            3444556677889999999999999887              456666 6633221 110         0111222   2


Q ss_pred             eecccccCCCEEEEEEEEEeEEeeeEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022189          233 GVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  299 (301)
Q Consensus       233 ~I~~~d~~~~~~QVTVRf~s~Q~~~iyD~~GrlV~Gs~d~~~dV~EyWVFeR~l~~~~~~WrL~gki  299 (301)
                      +|     .++.+.+.|.+.       +       .     ...+.+|.+|.|.    ++.|+|..|+
T Consensus        78 ~i-----~gd~A~a~v~~~-------~-------~-----~~~f~D~~~L~k~----dg~WkIv~K~  116 (120)
T 3fka_A           78 SV-----QGDIAMLHVEND-------W-------A-----GMRFDDFLTVLLH----EGSWRIVSKV  116 (120)
T ss_dssp             EE-----ETTEEEEEEEEE-------E-------T-----TEEEEEEEEEEEE----TTEEEEEEEE
T ss_pred             EE-----ECCEEEEEEEEE-------c-------C-----CCceEEEEEEEEe----CCEEEEEEEE
Confidence            22     245666666631       1       1     2358999999998    7899999986

>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0

Probab=86.00  E-value=7.1  Score=30.73  Aligned_cols=92  Identities=11%  Similarity=0.222  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHhhcHHH---------------HHHHHHHHHHhhccCCceeeeeecccccceEEEEEEe
Q 022189          168 AVDLYKEINTLMANGDKTSLRKAVTEKM---------------YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLI  232 (301)
Q Consensus       168 Ak~iy~~I~~A~a~gD~~~Lr~lvTe~~---------------y~~l~~~Ik~R~~~g~~v~W~lv~~le~~rvv~~rli  232 (301)
                      .+++.....+++.+||.+.|+..++|++               ++++...+..+... ...              +.++.
T Consensus        14 I~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~~G~~l~~~~~~e~~~~v~~~~p~-~~~--------------~~~I~   78 (125)
T 3duk_A           14 ITEVLNVYMNAAESGTGEEMSAAFHKDATIFGYVGDKLAFNGPIKDLYDWHNSNGPA-KNV--------------QSRIT   78 (125)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEETTEEEEEEETHHHHHHHHHHCCC-TTC--------------EEEEE
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEcCCCEEeeCCHHHHHHHHhccCCC-Ccc--------------cceEE
Confidence            4455667778889999999999998877               24555555544211 110              11222


Q ss_pred             eecccccCCCEEEEEEEEEeEEeeeEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022189          233 GVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  299 (301)
Q Consensus       233 ~I~~~d~~~~~~QVTVRf~s~Q~~~iyD~~GrlV~Gs~d~~~dV~EyWVFeR~l~~~~~~WrL~gki  299 (301)
                      .|+   +.++.+.+.|++.  .           ..|     ..++||.+|.|.    ++.|+|..|+
T Consensus        79 ~I~---i~gd~A~a~v~~~--~-----------~~~-----~~f~D~l~L~k~----dg~WkIv~K~  120 (125)
T 3duk_A           79 NID---IVGTVAHARVEAE--N-----------WTN-----FKFSDLFLLLKL----DGKWTIVNKV  120 (125)
T ss_dssp             EEE---EETTEEEEEEEEE--C-----------SSS-----CCEEEEEEEEEE----TTEEEEEEEE
T ss_pred             EEE---EECCEEEEEEEEE--E-----------cCC-----CeEEEEEEEEEe----CCEEEEEEEE
Confidence            221   2245666666542  0           011     357999999998    7899999986

>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14

Probab=85.85  E-value=6.5  Score=30.59  Aligned_cols=30  Identities=20%  Similarity=0.223  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHHHH
Q 022189          167 EAVDLYKEINTLMANGDKTSLRKAVTEKMY  196 (301)
Q Consensus       167 ~Ak~iy~~I~~A~a~gD~~~Lr~lvTe~~y  196 (301)
                      ..+++......|+.++|.+.|+...+|.+.
T Consensus        13 aI~~~~~~y~~a~~~~D~~~l~~~f~~da~   42 (128)
T 3blz_A           13 AIVEVLSKYNEGGKKADSTIMRPAFSSQAT   42 (128)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHGGGEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHhhCCCcE
Confidence            445677788899999999999999888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d2cw9a1	182	d.17.4.13 (A:270-451) Translocase of inner mitocho	5e-21
d2fxta1	192	d.17.4.13 (A:234-425) Translocase of inner mitocho	2e-18

>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 182

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 5e-21
 Identities = 27/157 (17%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 146 KSAYAIAKLRK--SGYSKQKFYTEAV-DLYKEINTLMANGDKTSLRKAVTEKMYSALKNE 202
           + +  + ++ +    + K +F  +   D+   +   M +G+   L+    E  YS L + 
Sbjct: 26  EMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHP 85

Query: 203 IKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSK 262
           I+Q +++    +  +++            + +    + +    L + F A+      + K
Sbjct: 86  IQQAKALGLQFHSRILDIDN---------VDLAMGKMVEQGPVLIITFQAQLVMVVRNPK 136

Query: 263 GVTVAGDKTKEVLVRDIWVFEKSL--FHPGAYWRLCG 297
           G  V GD  K + +  +W   +     +P A WRL  
Sbjct: 137 GEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLD 173

>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.6 bits (196), Expect = 2e-18
 Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 15/160 (9%)

Query: 144 ELKSAYAIAKLRK--SGYSKQKFYTEAVDLY-KEINTLMANGDKTSLRKAVTEKMYSALK 200
           E +S+   ++ +     +S + F     +    EI      GD   L+K  +E  ++   
Sbjct: 34  ETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYA 93

Query: 201 NEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYD 260
            + K  +      +  +++ I  +  + A+L+             L +   A++      
Sbjct: 94  AQQKIFKEQDVYADGRILD-IRGVEIVSAKLLAPQD------IPVLVVGCRAQEINLYRK 146

Query: 261 SK-GVTVAGDKTKEVLVRDIWVFEKSLF----HPGAYWRL 295
            K G   AGD+   ++     VF +            W++
Sbjct: 147 KKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWKI 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d2cw9a1	182	Translocase of inner mitochondrial membrane TIMM44	99.97
d2fxta1	192	Translocase of inner mitochondrial membrane TIMM44	99.96
d3bb9a1	121	Uncharacterized protein Sfri1973 {Shewanella frigi	90.14
d2r4ia1	122	Uncharacterized protein CHU142 {Cytophaga hutchins	87.78
d3d9ra1	132	Uncharacterized protein ECA1476 {Pectobacterium at	86.58
d2gxfa1	128	Hypothetical protein YybH {Bacillus subtilis [TaxI	82.56

>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-31  Score=231.53  Aligned_cols=150  Identities=18%  Similarity=0.292  Sum_probs=131.6

Q ss_pred             HHHHHhHHHHHHHHHh--CCCChHHHHHHHHH-HHHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHhhccCCceeeee
Q 022189          141 IILELKSAYAIAKLRK--SGYSKQKFYTEAVD-LYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL  217 (301)
Q Consensus       141 l~~~~ks~~~i~~irk--~~Fd~~~F~~~Ak~-iy~~I~~A~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~~v~W~l  217 (301)
                      +..+.+.+.++++|++  |+||.++|+.+|+. +|.+|++||++||++.|++|||+++|+.|..+|++|+..|.++.+++
T Consensus        21 ~~~~~~~~~~l~~i~~~Dp~F~~~~Fl~gAk~~~~~~i~~A~~~gD~~~L~~llt~~~~~~f~~~i~~r~~~g~~~~~~~  100 (182)
T d2cw9a1          21 LFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI  100 (182)
T ss_dssp             TTHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCEE
T ss_pred             CCCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHhhHHHHHHHHHHHHHHHHCCCeeeeee
Confidence            5567778899999996  99999999999985 89999999999999999999999999999999999999988755544


Q ss_pred             ecccccceEEEEEEeeecccccCCCEEEEEEEEEeEEeeeEEcCCCceecCCCCCeeeeeEEEEEEEeCCC--CCCCeEE
Q 022189          218 IEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFH--PGAYWRL  295 (301)
Q Consensus       218 v~~le~~rvv~~rli~I~~~d~~~~~~QVTVRf~s~Q~~~iyD~~GrlV~Gs~d~~~dV~EyWVFeR~l~~--~~~~WrL  295 (301)
                               +.++.++|..+++.+..+++||+|+++|+.|+||++|++|+|+++++++|.|+|+|+|+++.  |+++|+|
T Consensus       101 ---------i~i~~~ei~~a~~~~~~~~itV~F~~~qi~~~~D~~G~iveG~~d~i~~v~e~W~F~R~~~s~~Pn~~W~L  171 (182)
T d2cw9a1         101 ---------LDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL  171 (182)
T ss_dssp             ---------EEEEEEEEEEEEEETTEEEEEEEEEEEEECEEECTTSCEEEECTTCCEEEEEEEEEEECTTCSCGGGCEEE
T ss_pred             ---------cccccceeEEEEeeCCceEEEEEEEEEehhheecCCCCEecCCCCCceEEEEEEEEEEcCcCCCCCCCEEE
Confidence                     44444444444455788999999999999999999999999999999999999999999975  4566999


Q ss_pred             EEEe
Q 022189          296 CGRI  299 (301)
Q Consensus       296 ~gki  299 (301)
                      .++-
T Consensus       172 ~~iq  175 (182)
T d2cw9a1         172 LDIS  175 (182)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9863

>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.8e-29  Score=218.98  Aligned_cols=150  Identities=16%  Similarity=0.193  Sum_probs=129.7

Q ss_pred             HHHhHHHHHHHHHh--CCCChHHHHHHHHHHHH-HHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHhhccCCceeeeeec
Q 022189          143 LELKSAYAIAKLRK--SGYSKQKFYTEAVDLYK-EINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE  219 (301)
Q Consensus       143 ~~~ks~~~i~~irk--~~Fd~~~F~~~Ak~iy~-~I~~A~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~~v~W~lv~  219 (301)
                      .+...+.++++|++  |+||..+|+.+|+++|. +|++||++||++.|++||++++|+.|.+.|++|+..|.+++++++.
T Consensus        33 ~ete~~~~l~~ik~~Dp~F~~~~Fl~gak~~~~p~Il~Af~~GD~~~Lk~lls~~vy~~f~~~I~~r~~~g~~~~~~ii~  112 (192)
T d2fxta1          33 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILD  112 (192)
T ss_dssp             CCCCSHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHBCHHHHHHHHHHHHHHHHTTEECCEEECC
T ss_pred             ccCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhHHHHHHHHHHHHHHHHcCCeeeEEEec
Confidence            44566788999997  99999999999999986 8999999999999999999999999999999999999998888763


Q ss_pred             ccccceEEEEEEeeecccccCCCEEEEEEEEEeEEeeeEEcC-CCceecCCCCCeeeeeEEEEEEEeCCCCC----CCeE
Q 022189          220 PIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDS-KGVTVAGDKTKEVLVRDIWVFEKSLFHPG----AYWR  294 (301)
Q Consensus       220 ~le~~rvv~~rli~I~~~d~~~~~~QVTVRf~s~Q~~~iyD~-~GrlV~Gs~d~~~dV~EyWVFeR~l~~~~----~~Wr  294 (301)
                       +..+.++.+++.      ..+.++++||+|+++|+.|++|. +|++|+|+++.++.|.|+|+|+|++...+    +.|+
T Consensus       113 -I~~~~I~~a~~~------~~~~~~~itV~F~t~qi~~~~d~k~G~IieGd~d~i~~v~d~WtF~R~~~~~~pn~~~~W~  185 (192)
T d2fxta1         113 -IRGVEIVSAKLL------APQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWK  185 (192)
T ss_dssp             -CEEEEEEEEEEE------TTTTEEEEEEEEEECEEECCEETTTBTTSSCSCCCCCCEEEEEEEECCSSSCTTSSSTTCE
T ss_pred             -cceeEEEEEEEe------cCCCeEEEEEEEEEEEEEEEEecCCCcEecCCCCccEEEEEEEEEEEcCccCCCCCCCCEE
Confidence             455555555432      13679999999999999999985 69999999999999999999999998544    4599


Q ss_pred             EEEEe
Q 022189          295 LCGRI  299 (301)
Q Consensus       295 L~gki  299 (301)
                      |.+..
T Consensus       186 LiE~~  190 (192)
T d2fxta1         186 ILEFV  190 (192)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            98754

>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein Sfri1973
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.14  E-value=0.9  Score=32.63  Aligned_cols=29  Identities=14%  Similarity=0.365  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022189          167 EAVDLYKEINTLMANGDKTSLRKAVTEKM  195 (301)
Q Consensus       167 ~Ak~iy~~I~~A~a~gD~~~Lr~lvTe~~  195 (301)
                      .++++..+.++|+.+||.+.|..+++|++
T Consensus         4 a~~~v~~~~~~A~~~~D~~~~~~l~a~D~   32 (121)
T d3bb9a1           4 AAGNVVKQFHAALQMGNEAIVRQSLAANV   32 (121)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhCCCe
Confidence            35778899999999999999999998863

>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: CHU142-like
domain: Uncharacterized protein CHU142
species: Cytophaga hutchinsonii [TaxId: 985]

Probab=87.78  E-value=2.3  Score=30.40  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022189          167 EAVDLYKEINTLMANGDKTSLRKAVTEKM  195 (301)
Q Consensus       167 ~Ak~iy~~I~~A~a~gD~~~Lr~lvTe~~  195 (301)
                      +..++...+.+|+.+||.+.|..+++|.+
T Consensus         6 ~I~~~~~~~~~A~~~~D~~~l~~l~~~d~   34 (122)
T d2r4ia1           6 VILDCEKKLLTAIQNNDVESLEVLLHDDL   34 (122)
T ss_dssp             HHTHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHhhhcccE
Confidence            44577889999999999999999998875

>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: ECA1476-like
domain: Uncharacterized protein ECA1476
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=86.58  E-value=4  Score=29.32  Aligned_cols=28  Identities=11%  Similarity=-0.030  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHH
Q 022189          167 EAVDLYKEINTLMANGDKTSLRKAVTEK  194 (301)
Q Consensus       167 ~Ak~iy~~I~~A~a~gD~~~Lr~lvTe~  194 (301)
                      ..+++...-.+||.+||.+.+-.+.|+.
T Consensus         9 aI~~~~~~y~~A~~~~D~~~~~~l~t~D   36 (132)
T d3d9ra1           9 VIEAAAIAYLTAFNRADIPAVIATYTDD   36 (132)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHTEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence            4466778889999999999999988876

>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: YybH-like
domain: Hypothetical protein YybH
species: Bacillus subtilis [TaxId: 1423]

Probab=82.56  E-value=3.2  Score=30.21  Aligned_cols=30  Identities=17%  Similarity=0.193  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022189          166 TEAVDLYKEINTLMANGDKTSLRKAVTEKM  195 (301)
Q Consensus       166 ~~Ak~iy~~I~~A~a~gD~~~Lr~lvTe~~  195 (301)
                      ++.++++....+||.+||.+.|-.+.++.+
T Consensus         3 ~~I~~l~~~~~~A~~~~D~d~~~~l~~~Da   32 (128)
T d2gxfa1           3 QQLKDIISACDLAIQNEDFDTLMNYYSEDA   32 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhhccCC
Confidence            345788999999999999999999988764