Citrus Sinensis ID: 022194

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNGP
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccccccccccccccccccccccccccccEEccccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEEEccccHHHHHHHccccccEEEEEccccccccHHcHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEccccccccccHHHccEEEEccHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHccccccccccccccccccccccEcccccccccccccEcccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHcccccccEEEEEccccHHHHHHHHHcHHHHccEEEEEccccHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHccccEEEEEccccccccccHHHHcccEEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHcccEccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHcccccccccc
Coil and Loop (DISEMBL)
msveeepgvSTLLMnfsnefdpygalstplyqtatfkqpsatengpydytrsgnptRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGtgeeivagddlyggtdrllsrvtpktGVVVKRVntcdldevasaigpwtklvwvesptnprqqiCDIRKIAEMAHAHGALLLvdnsimspvlsrplelgADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQnaegsglapfdcwiCLRGVKTMALRVEKQQDNAQKIAEFLAShprvkkvnyaglpehpghelhysqvlsdngp
Flexible Loop (DISEMBL)
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRllsrvtpktgvvvkrvntcdldevasaigpwtklvwvesptnPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAglpehpghelhysqvlsdngp
Low Complexity Region (SEG)
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESllakldkadralCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNGP
Disordered region (IsUnstruct)
***********LLMNFSNEFDPYGALSTPLYQT*****************************LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK*****QKIAEFLASHPRVKKVNYA*********************
Disordered Region (DISOPRED)
******P****LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVL*****
Disordered Region (DISEMBL)
*********STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNGP
Disordered Region (DISPRO)
******PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG*EL*Y*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNGP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
P53780	464	Cystathionine beta-lyase,	no	no	0.976	0.633	0.836	1e-151
O31632	390	Cystathionine beta-lyase	yes	no	0.900	0.694	0.483	4e-75
A2RM21	380	Cystathionine beta-lyase	yes	no	0.903	0.715	0.477	2e-74
P0A4K2	380	Cystathionine beta-lyase	yes	no	0.903	0.715	0.477	2e-74
O05394	379	Cystathionine gamma-lyase	no	no	0.900	0.715	0.457	1e-72
Q55DV9	387	Cystathionine gamma-lyase	yes	no	0.903	0.702	0.472	1e-72
P0C2T9	380	Cystathionine beta-lyase	N/A	no	0.920	0.728	0.465	1e-71
Q1M0P5	380	Cystathionine gamma-synth	yes	no	0.920	0.728	0.458	1e-71
P56069	380	Cystathionine gamma-synth	yes	no	0.920	0.728	0.458	3e-71
O94350	390	Cystathionine beta-lyase	yes	no	0.940	0.725	0.482	1e-70

>sp|P53780|METC_ARATH Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1

 Score =  534 bits (1376), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 246/294 (83%), Positives = 276/294 (93%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQ
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQ 372

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 8

>sp|O31632|METC_BACSU Cystathionine beta-lyase MetC OS=Bacillus subtilis (strain 168) GN=metC PE=1 SV=1

 Score =  281 bits (719), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 131/271 (48%), Positives = 185/271 (68%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+   +TF Q S  E G YDY+RSG PTR ALE  +A L+   R   F+SGMAA+
Sbjct: 24  GAVSVPIQHASTFHQSSFEEFGAYDYSRSGTPTRTALEETIAALEGGTRGFAFSSGMAAI 83

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
           +    LL  G+ ++  +D+YGGT R+++ V  + G+    V+  D +EVA +I P TK++
Sbjct: 84  STAFLLLSQGDHVLVTEDVYGGTFRMVTEVLTRFGIEHTFVDMTDRNEVARSIKPNTKVI 143

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+P+NP   I DI+ + ++A  +G L  +DN+ M+P L RPL+LG DIV+HSATKF++
Sbjct: 144 YMETPSNPTLGITDIKAVVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATKFLS 203

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV++G+ AVK E L K+LY LQNA G+ L   DCW+ LRG+KT+ +R+EK    AQ+
Sbjct: 204 GHSDVLSGLAAVKDEELGKQLYKLQNAFGAVLGVQDCWLVLRGLKTLQVRLEKASQTAQR 263

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           +AEF   HP VK+V Y GL +HPG E H SQ
Sbjct: 264 LAEFFQKHPAVKRVYYPGLADHPGAETHKSQ 294

Catalyzes the transformation of cystathionine into homocysteine. Also exhibits cysteine desulfhydrase activity in vitro, producing sulfide from cysteine.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1

 Score =  279 bits (713), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/272 (47%), Positives = 186/272 (68%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE L+A L+   +   F+SG+A +
Sbjct: 20  GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGI 79

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +LD++ +A    TK +
Sbjct: 80  HAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAI 139

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           + E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ 
Sbjct: 140 YFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++    + LA E+ FLQN+ G+ L P D W+  RG+KT+ALR+E    NAQK
Sbjct: 200 GHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQK 259

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           IAEFL +   V KV Y GL  HPGHE+   Q+
Sbjct: 260 IAEFLETSKAVSKVYYPGLNSHPGHEIAKKQM 291

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1

 Score =  279 bits (713), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/272 (47%), Positives = 186/272 (68%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE L+A L+   +   F+SG+A +
Sbjct: 20  GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGI 79

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +LD++ +A    TK +
Sbjct: 80  HAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAI 139

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           + E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ 
Sbjct: 140 YFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++    + LA E+ FLQN+ G+ L P D W+  RG+KT+ALR+E    NAQK
Sbjct: 200 GHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQK 259

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           IAEFL +   V KV Y GL  HPGHE+   Q+
Sbjct: 260 IAEFLETSKAVSKVYYPGLNSHPGHEIAKKQM 291

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1

 Score =  273 bits (698), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 124/271 (45%), Positives = 186/271 (68%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQ +T+KQP A ++  Y+Y+R+ NPTR ALE+L+ +L+  +    F+SGMAA+
Sbjct: 19  GAVSVPIYQVSTYKQPKAGQHTGYEYSRTANPTRTALEALVTELESGEAGYAFSSGMAAI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L  +G+ +V  DD+YGGT R++++V  + G+    V+T   +EV  AI P TK +
Sbjct: 79  TAVMMLFNSGDHVVLTDDVYGGTYRVMTKVLNRLGIESTFVDTSSREEVEKAIRPNTKAI 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+PTNP  +I D+  +A++A   G LL+VDN+  +P   +PL LGADIV+HSATK++ 
Sbjct: 139 YIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+ G++    + L +EL+F+QN+ G  L P D W+ +RG+KT+ LR+E    NA+K
Sbjct: 199 GHSDVVGGLVVTASKELGEELHFVQNSTGGVLGPQDSWLLMRGIKTLGLRMEAIDQNARK 258

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           IA FL +HP V+ + Y G   HPGHEL  +Q
Sbjct: 259 IASFLENHPAVQTLYYPGSSNHPGHELAKTQ 289

Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|Q55DV9|CGL_DICDI Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1

 Score =  273 bits (698), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/273 (47%), Positives = 180/273 (65%), Gaps = 1/273 (0%)

Query: 24  GALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           GA+  P+  + TF QPS    +  YDY+RSGNPTR A E  +A  + A  AL F SG+A 
Sbjct: 25  GAVIVPISLSTTFLQPSPGVLHSEYDYSRSGNPTRKAFEECIAACENAKYALSFASGLAT 84

Query: 83  LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKL 142
           L  +THLL +G+E+++ DD+YGGT R  +RV     +    V+   LD++ +A    T+L
Sbjct: 85  LTTITHLLKSGDEVISIDDVYGGTRRYFTRVAANFDLKFSFVDLSTLDDLKNAFTDKTRL 144

Query: 143 VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFI 202
           VW+E+PTNP  ++ DI+ +A+  H+ GA L+VDN+ MSP    PL+LGADIVMHS TK+I
Sbjct: 145 VWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYI 204

Query: 203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQ 262
            GHSD + GVLA   + L  +L FLQN+ G+  +PFDC++ LRG+KT+ +R+E  Q NA 
Sbjct: 205 NGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAF 264

Query: 263 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
            I  FL  HP+V++V Y GLP HP HE+   Q+
Sbjct: 265 AICNFLEKHPKVERVIYPGLPSHPQHEICKRQM 297

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P0C2T9|METC_LACLC Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1

 Score =  270 bits (690), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/277 (46%), Positives = 185/277 (66%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE L+A L+   +   F+SG+A +
Sbjct: 20  GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGI 79

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +L+++ +A    TK V
Sbjct: 80  HAVLSLFSAGDHIILADDVYGGTFRLVDKVLTKTGIIYDLVDLSNLEDLKAAFKAETKAV 139

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           + E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ 
Sbjct: 140 YFETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++      LA E+ FLQN+ G+ L P D W+  RG+KT+A R+E    NAQK
Sbjct: 200 GHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDSWLVQRGIKTLAPRMEAHSANAQK 259

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG 300
           IAEFL +   V KV Y GL  H GHE+   Q+ +  G
Sbjct: 260 IAEFLEASQAVSKVYYPGLVNHEGHEIAKKQMTAFGG 296

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (taxid: 1359)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|Q1M0P5|METB_HELPX Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 127/277 (45%), Positives = 185/277 (66%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T++Q +   +  Y+Y+RSGNPTR ALE L+A L+   +   F SG+A +
Sbjct: 19  GAVSVPIYQTSTYRQDAIGHHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  LL +G+ ++ GDD+YGGT RL ++V  K G+    ++T DL ++  AI P TK +
Sbjct: 79  HAVFSLLQSGDHVLLGDDVYGGTFRLFNKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKAL 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+P+NP  +I D+ + A +A  HG L +VDN+  +P    PL LGADIV+HS TK++ 
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR++  Q NA  
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMQAHQKNALC 258

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG 300
           +AEFL  HP+V++V Y GLP HP +EL   Q+   +G
Sbjct: 259 VAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSG 295

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (taxid: 210)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|P56069|METB_HELPY Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=3 SV=1

 Score =  268 bits (686), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/277 (45%), Positives = 184/277 (66%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T++Q +   +  Y+Y+RSGNPTR ALE L+A L+   +   F SG+A +
Sbjct: 19  GAVSVPIYQTSTYRQDAIGRHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  LL +G+ ++ GDD+YGGT RL ++V  K G+    ++T D+ ++  AI P TK +
Sbjct: 79  HAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSCTIIDTSDISQIKKAIKPNTKAL 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+P+NP  +I D+ + A +A  HG L +VDN+  +P    PL LGADIV HS TK++ 
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR+E  Q NA  
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALC 258

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG 300
           +AEFL  HP+V++V Y GLP HP +EL   Q+   +G
Sbjct: 259 VAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSG 295

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|O94350|CBL_SCHPO Cystathionine beta-lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=str3 PE=3 SV=4

 Score =  266 bits (680), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 139/288 (48%), Positives = 189/288 (65%), Gaps = 5/288 (1%)

Query: 9   VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD 68
           V T L++     D Y A S P+YQ+ATFKQP     G +DYTRSGNPTR  L+  LAKL 
Sbjct: 9   VDTELVHVEGNEDQYHASSVPIYQSATFKQPCLEHMGKFDYTRSGNPTRSVLQVHLAKLM 68

Query: 69  KADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD 128
           KA  A   ++GM+AL  +     +   +VAG DLYGG+DRLLS    + G  V  V+T D
Sbjct: 69  KAKHAFVTSNGMSALDMILRCCKSNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVDTSD 128

Query: 129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM--AHAHGALLLVDNSIMSPVLSRP 186
           L    +A+ P T LV +ESPTNPR  ICDIR I ++  + A  ALL++DN+++SPVL  P
Sbjct: 129 LAAFEAALRPDTNLVLIESPTNPRISICDIRAIVKITRSKAKDALLVMDNTMLSPVLCNP 188

Query: 187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG 246
           L+ G DIV  SATK+++GH D+M GV+A K + +AK ++F  NA G+ +APF+C++ LRG
Sbjct: 189 LDFGYDIVYESATKYLSGHHDLMGGVIATKSDEIAKSVFFNINAMGAAMAPFECFLLLRG 248

Query: 247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL-PEHPGHELHYS 293
           +KTM LRVE+ Q NA +IA+FL S  +  +VN+ GL P+     + YS
Sbjct: 249 IKTMGLRVERAQQNAIEIAKFLKS--KGLQVNFPGLDPDAKSTAIFYS 294

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
255543511	467	cystathionine beta-lyase, putative [Rici	0.963	0.620	0.882	1e-154
356571951	467	PREDICTED: cystathionine beta-lyase, chl	0.976	0.629	0.838	1e-150
30694567	378	cystathionine beta-lyase [Arabidopsis th	0.983	0.783	0.837	1e-150
15230203	464	cystathionine beta-lyase [Arabidopsis th	0.976	0.633	0.836	1e-149
30694565	449	cystathionine beta-lyase [Arabidopsis th	0.976	0.654	0.836	1e-149
297820494	449	cystathionine beta-lyase [Arabidopsis ly	0.976	0.654	0.840	1e-149
449452983	459	PREDICTED: cystathionine beta-lyase, chl	0.966	0.633	0.848	1e-149
363806786	468	cystathionine beta-lyase, chloroplastic-	0.960	0.617	0.854	1e-149
449519446	409	PREDICTED: cystathionine beta-lyase, chl	0.966	0.711	0.848	1e-149
8439539	471	cystathionine beta-lyase [Solanum tubero	0.963	0.615	0.837	1e-147

>gi|255543511|ref|XP_002512818.1| cystathionine beta-lyase, putative [Ricinus communis] gi|223547829|gb|EEF49321.1| cystathionine beta-lyase, putative [Ricinus communis]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 256/290 (88%), Positives = 278/290 (95%)

Query: 5   EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 64
            EP +ST+LMNF N+FDPY A+S PLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL
Sbjct: 86  REPNISTILMNFENKFDPYDAMSMPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 145

Query: 65  AKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
           AKLDKADRA CFTSGMAALAAVTHL+ TG+EI+AGDD+YGG+DRLLS+VTPK+GVVVKRV
Sbjct: 146 AKLDKADRAFCFTSGMAALAAVTHLVETGQEIIAGDDIYGGSDRLLSQVTPKSGVVVKRV 205

Query: 125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
           NT +LDEVASAIGPWTKLVW+ESPTNPRQQI DIRKIA++AH HGAL+LVDNSIMSPVLS
Sbjct: 206 NTSNLDEVASAIGPWTKLVWLESPTNPRQQISDIRKIAKIAHTHGALVLVDNSIMSPVLS 265

Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
           +PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA++LYFLQNAEGSGLAPFDCWICL
Sbjct: 266 QPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLARDLYFLQNAEGSGLAPFDCWICL 325

Query: 245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           RG+KTMALRVEKQQDNAQKIAEFLA+HPRVKKVNYAGLP HPG +LHYSQ
Sbjct: 326 RGIKTMALRVEKQQDNAQKIAEFLATHPRVKKVNYAGLPGHPGRDLHYSQ 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571951|ref|XP_003554134.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Glycine max]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/298 (83%), Positives = 279/298 (93%), Gaps = 4/298 (1%)

Query: 1   MSVEEE----PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPT 56
           MS+ EE    P +ST++MNF ++FDP+GA+STPLYQTATFKQPSA ENGPYDYTRSGNPT
Sbjct: 78  MSLSEEDLGEPSISTMVMNFESKFDPFGAISTPLYQTATFKQPSAIENGPYDYTRSGNPT 137

Query: 57  RDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK 116
           RDALESLLAKLDKADRALCFTSGMAAL+AV  L+GTGEEIV GDD+YGG+DRLLS+V P+
Sbjct: 138 RDALESLLAKLDKADRALCFTSGMAALSAVVRLVGTGEEIVTGDDVYGGSDRLLSQVVPR 197

Query: 117 TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176
           TG+VVKRVNTCDLDEVA+AIG  TKLVW+ESPTNPR QI DIRKI+EMAH+HGAL+LVDN
Sbjct: 198 TGIVVKRVNTCDLDEVAAAIGLRTKLVWLESPTNPRLQISDIRKISEMAHSHGALVLVDN 257

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           SIMSPVLS+PLELGADIVMHSATKFIAGHSD+MAGVLAVKGE+L KE+YFLQNAEGSGLA
Sbjct: 258 SIMSPVLSQPLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLEKEMYFLQNAEGSGLA 317

Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           PFDCW+CLRG+KTMALR+EKQQDNAQKIAEFLASHPRVK+VNYAGLP HPG +LHYSQ
Sbjct: 318 PFDCWLCLRGIKTMALRIEKQQDNAQKIAEFLASHPRVKEVNYAGLPGHPGRDLHYSQ 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694567|ref|NP_850713.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|332646083|gb|AEE79604.1| cystathionine beta-lyase [Arabidopsis thaliana]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 248/296 (83%), Positives = 278/296 (93%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVL 296
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQVL
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQVL 374

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230203|ref|NP_191264.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|1708993|sp|P53780.1|METC_ARATH RecName: Full=Cystathionine beta-lyase, chloroplastic; Short=CBL; AltName: Full=Beta-cystathionase; AltName: Full=Cysteine lyase; Flags: Precursor gi|13786771|pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana gi|13786772|pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana gi|704397|gb|AAA99176.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|6911875|emb|CAB72175.1| CYSTATHIONINE BETA-LYASE PRECURSOR (CBL) [Arabidopsis thaliana] gi|222423596|dbj|BAH19767.1| AT3G57050 [Arabidopsis thaliana] gi|332646082|gb|AEE79603.1| cystathionine beta-lyase [Arabidopsis thaliana]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 246/294 (83%), Positives = 276/294 (93%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQ
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQ 372

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694565|ref|NP_850712.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|17381124|gb|AAL36374.1| putative cystathionine beta-lyase precursor CBL [Arabidopsis thaliana] gi|21281081|gb|AAM45099.1| putative cystathionine beta-lyase precursor CBL [Arabidopsis thaliana] gi|332646084|gb|AEE79605.1| cystathionine beta-lyase [Arabidopsis thaliana]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 246/294 (83%), Positives = 276/294 (93%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 64  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 123

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 124 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 183

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 184 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 243

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 244 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 303

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQ
Sbjct: 304 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQ 357

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820494|ref|XP_002878130.1| cystathionine beta-lyase [Arabidopsis lyrata subsp. lyrata] gi|297323968|gb|EFH54389.1| cystathionine beta-lyase [Arabidopsis lyrata subsp. lyrata]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 247/294 (84%), Positives = 277/294 (94%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 64  MNIKEEASVSTLLVNLDNKFDPFEAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 123

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 124 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 183

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT +LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKIAEMAHA GAL+LVDNSIMS
Sbjct: 184 VKRVNTTNLDEVAAAIGPRTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMS 243

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 244 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 303

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQ
Sbjct: 304 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQ 357

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452983|ref|XP_004144238.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cucumis sativus]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 247/291 (84%), Positives = 273/291 (93%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESL 63
           EEEP +ST++MNF ++FDPYGA+STPLYQTATFKQP+ATENGPYDYTRSGNPTRDALESL
Sbjct: 77  EEEPSISTMIMNFESKFDPYGAVSTPLYQTATFKQPTATENGPYDYTRSGNPTRDALESL 136

Query: 64  LAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           LA+L+KADRALCFTSGMAAL+AV  L+GTGEEIVAGDD+YGG+DRLLS+V P+ G+VVKR
Sbjct: 137 LAELEKADRALCFTSGMAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVIPRRGIVVKR 196

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183
           VNT DLDEV+SAIGP TKLVW+ESPTNPR QI DIR IA MAH HGAL+LVDNSI+SPVL
Sbjct: 197 VNTSDLDEVSSAIGPLTKLVWLESPTNPRLQISDIRTIATMAHKHGALVLVDNSILSPVL 256

Query: 184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243
           SRPL+LGADIVMHSATKFIAGHSDVMAGVLAV+GERLAKELYFLQNAEGSGLAPFDCWIC
Sbjct: 257 SRPLDLGADIVMHSATKFIAGHSDVMAGVLAVRGERLAKELYFLQNAEGSGLAPFDCWIC 316

Query: 244 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           LRG+KT+ALRVEKQQ+NAQKIAEFL +HPRVKKV YAGLP HPG  LHYSQ
Sbjct: 317 LRGIKTLALRVEKQQENAQKIAEFLYTHPRVKKVYYAGLPTHPGRSLHYSQ 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806786|ref|NP_001242026.1| cystathionine beta-lyase, chloroplastic-like [Glycine max] gi|255641003|gb|ACU20781.1| unknown [Glycine max]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 247/289 (85%), Positives = 274/289 (94%)

Query: 6   EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLA 65
           EP +STL+MNF ++FDP+GA+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDALESLLA
Sbjct: 88  EPSISTLVMNFESKFDPFGAISTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLA 147

Query: 66  KLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN 125
           KLDKADRALCFTSGMAAL+AV  L+GTGEEIVAGDD+ GG+DRLLS+V P+TG+VVKR N
Sbjct: 148 KLDKADRALCFTSGMAALSAVVRLVGTGEEIVAGDDVSGGSDRLLSQVVPRTGIVVKRAN 207

Query: 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR 185
           TCDL+EVA+AIGP TKLVW+ESPTNP  QI DI+KI+E+AH+HGAL+LVDNSIMSPVLSR
Sbjct: 208 TCDLNEVAAAIGPKTKLVWLESPTNPWLQISDIQKISEIAHSHGALVLVDNSIMSPVLSR 267

Query: 186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245
           PLELGADIVMHSATKFIAGHSD+MAGVLAVKGE+L KELYFLQNAEGSGLAPFDCW+CLR
Sbjct: 268 PLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLGKELYFLQNAEGSGLAPFDCWLCLR 327

Query: 246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           G+KTMALR+EKQQDNAQKIAEFLASHPRVKKVNYAGLP HPG +LHYSQ
Sbjct: 328 GIKTMALRIEKQQDNAQKIAEFLASHPRVKKVNYAGLPGHPGRDLHYSQ 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519446|ref|XP_004166746.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cucumis sativus]

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 247/291 (84%), Positives = 273/291 (93%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESL 63
           EEEP +ST++MNF ++FDPYGA+STPLYQTATFKQP+ATENGPYDYTRSGNPTRDALESL
Sbjct: 27  EEEPSISTMIMNFESKFDPYGAVSTPLYQTATFKQPTATENGPYDYTRSGNPTRDALESL 86

Query: 64  LAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           LA+L+KADRALCFTSGMAAL+AV  L+GTGEEIVAGDD+YGG+DRLLS+V P+ G+VVKR
Sbjct: 87  LAELEKADRALCFTSGMAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVIPRRGIVVKR 146

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183
           VNT DLDEV+SAIGP TKLVW+ESPTNPR QI DIR IA MAH HGAL+LVDNSI+SPVL
Sbjct: 147 VNTSDLDEVSSAIGPLTKLVWLESPTNPRLQISDIRTIAIMAHKHGALVLVDNSILSPVL 206

Query: 184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243
           SRPL+LGADIVMHSATKFIAGHSDVMAGVLAV+GERLAKELYFLQNAEGSGLAPFDCWIC
Sbjct: 207 SRPLDLGADIVMHSATKFIAGHSDVMAGVLAVRGERLAKELYFLQNAEGSGLAPFDCWIC 266

Query: 244 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           LRG+KT+ALRVEKQQ+NAQKIAEFL +HPRVKKV YAGLP HPG  LHYSQ
Sbjct: 267 LRGIKTLALRVEKQQENAQKIAEFLYTHPRVKKVYYAGLPTHPGRSLHYSQ 317

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8439539|gb|AAF74980.1|AF082890_1 cystathionine beta-lyase [Solanum tuberosum]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 243/290 (83%), Positives = 272/290 (93%)

Query: 5   EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 64
           +EP VST+LMNFSN+FDPYGALSTPLYQT+TFKQPSATENG YDYTRSGNPTRDALE LL
Sbjct: 90  KEPSVSTMLMNFSNDFDPYGALSTPLYQTSTFKQPSATENGQYDYTRSGNPTRDALEKLL 149

Query: 65  AKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
           A+L+KADRA CFTSGMAALAAVT L+  GEEIVAGDD+YGG+DRLLS+V PK G+VVKRV
Sbjct: 150 AELEKADRAFCFTSGMAALAAVTRLVKAGEEIVAGDDIYGGSDRLLSQVVPKAGIVVKRV 209

Query: 125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
           +T +LDEVAS I PWTKL+W+ESPTNPRQQICDIRKIA++AHAHGAL+LVDNSIMSPVLS
Sbjct: 210 DTTNLDEVASVIKPWTKLIWLESPTNPRQQICDIRKIAKIAHAHGALVLVDNSIMSPVLS 269

Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
            PLELGADIVMHSATKFI+GHSD+MAGVLAV+GE LAKE+YFLQNAEG+GLAPFDCW+CL
Sbjct: 270 HPLELGADIVMHSATKFISGHSDLMAGVLAVRGESLAKEVYFLQNAEGAGLAPFDCWLCL 329

Query: 245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           RG+KTMALRVEKQQ+NAQKIAEFL+SHPRVKKVNY GL +HPG  LH+SQ
Sbjct: 330 RGIKTMALRVEKQQENAQKIAEFLSSHPRVKKVNYPGLLDHPGRSLHFSQ 379

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2080605	464	CBL "cystathionine beta-lyase"	0.976	0.633	0.799	6.8e-127
ASPGD|ASPL0000069608	458	metG [Emericella nidulans (tax	0.936	0.615	0.494	1.5e-67
UNIPROTKB|G4MSN2	454	MGG_07074 "Cystathionine beta-	0.900	0.596	0.489	4e-67
CGD|CAL0004561	404	orf19.2092 [Candida albicans (	0.960	0.715	0.469	1.7e-66
TIGR_CMR|GSU_0944	377	GSU_0944 "cystathionine beta-l	0.887	0.708	0.456	9.7e-64
DICTYBASE|DDB_G0269122	387	cysA "cystathionine gamma-lyas	0.920	0.715	0.453	3.3e-63
UNIPROTKB|Q81LL6	377	BAS4268 "Cys/Met metabolism PL	0.900	0.718	0.446	8.8e-63
TIGR_CMR|BA_4600	377	BA_4600 "cystathionine beta-ly	0.900	0.718	0.446	8.8e-63
TIGR_CMR|GSU_0945	378	GSU_0945 "cystathionine beta-l	0.956	0.761	0.434	8.8e-63
UNIPROTKB|P66875	388	metB "Cystathionine gamma-synt	0.973	0.755	0.442	3.8e-62

TAIR|locus:2080605 CBL "cystathionine beta-lyase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1246 (443.7 bits), Expect = 6.8e-127, P = 6.8e-127
 Identities = 235/294 (79%), Positives = 265/294 (90%)

Query:     1 MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
             M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct:    79 MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query:    61 ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
             ES            CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct:   139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query:   121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
             VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct:   199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query:   181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
             PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct:   259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query:   241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
             W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQ
Sbjct:   319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQ 372

GO:0003824 "catalytic activity" evidence=IEA

GO:0004121 "cystathionine beta-lyase activity" evidence=IEA;IMP

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0071266 "'de novo' L-methionine biosynthetic process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0019279 "L-methionine biosynthetic process from L-homoserine via cystathionine" evidence=TAS

ASPGD|ASPL0000069608 metG [Emericella nidulans (taxid:162425)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 142/287 (49%), Positives = 191/287 (66%)

Query:     9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXX 68
             ++T L+ ++   D Y A S P+YQ+ATFKQ S    G YDYTRSGNPTR  LE       
Sbjct:    38 IATELV-YTESNDQYNASSVPIYQSATFKQSSHEGGGEYDYTRSGNPTRTHLERHLAKIM 96

Query:    69 XXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD 128
                     +SGMAAL  +T LL  G+E+V GDDLYGGT+RLL  ++   G++V  V+T +
Sbjct:    97 SAQRALVVSSGMAALDVITRLLRPGDEVVTGDDLYGGTNRLLKYLSTNGGIIVHHVDTTN 156

Query:   129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH-AH-GALLLVDNSIMSPVLSRP 186
              D+V   +   T +V +E+PTNP  +I DI  IA  +H A+   L++VDN++MSP+L  P
Sbjct:   157 PDKVKEVLTDKTAMVLLETPTNPLIKIVDIPTIAAASHEANPNCLVIVDNTMMSPLLLSP 216

Query:   187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG 246
             LELGAD+V  S TK+++GH DVMAGV+AV    L + LYF  NA G GL+PFD W+ +RG
Sbjct:   217 LELGADVVYESGTKYLSGHHDVMAGVIAVNDPALGERLYFPINASGCGLSPFDSWLLMRG 276

Query:   247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS 293
             VKT+ +R+++QQ NAQ+IAEFL SH    KV Y GL  HP ++LH+S
Sbjct:   277 VKTLKVRMDQQQANAQRIAEFLESHGF--KVRYPGLRSHPQYDLHHS 321

GO:0004121 "cystathionine beta-lyase activity" evidence=RCA;IMP;IDA

GO:0006555 "methionine metabolic process" evidence=RCA

GO:0071266 "'de novo' L-methionine biosynthetic process" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0019346 "transsulfuration" evidence=IEA

UNIPROTKB|G4MSN2 MGG_07074 "Cystathionine beta-lyase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 135/276 (48%), Positives = 185/276 (67%)

Query:    21 DPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSG 79
             D YGA S P+YQ+ATFKQ SA   N  YDYTRSGNPTR  LE                SG
Sbjct:    56 DQYGASSIPIYQSATFKQSSAAGGNSEYDYTRSGNPTRTHLERHMAKIMNANRALAVGSG 115

Query:    80 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
             M AL  +T LL  G+E++ GDDLYGGT+RLL+ ++   G++V  ++T D+D VA+ +   
Sbjct:   116 MGALDVITRLLRPGDEVITGDDLYGGTNRLLTYLSANQGIIVHHIDTTDIDRVAATVSDK 175

Query:   140 TKLVWVESPTNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLSRPLELGADIVMHS 197
             T +V +E+PTNP  +I D+  IA  AH     AL++VDN+++SP+L  PL+LGADIV  S
Sbjct:   176 TAMVLLETPTNPLIKIVDVATIARAAHDRNSKALVVVDNTMLSPMLCNPLDLGADIVYES 235

Query:   198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
              TK+++GH D+M+G++A     LA  +YF  NA G GL+P D ++ +RG+KT+A+R+EKQ
Sbjct:   236 GTKYLSGHHDIMSGIVACNDAALADRMYFTVNATGCGLSPNDSFLLMRGIKTLAVRMEKQ 295

Query:   258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS 293
             Q NAQ+IAEFL SH    +V Y GL  HP ++LH+S
Sbjct:   296 QANAQRIAEFLESHGF--RVRYPGLKSHPQYDLHWS 329

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0004561 orf19.2092 [Candida albicans (taxid:5476)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 139/296 (46%), Positives = 196/296 (66%)

Query:     1 MSVEEEPGVST-LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDA 59
             MS ++   + T L++N S   D Y A   PLYQ+ATFKQPS +  G YDYTRSGNPTR  
Sbjct:     1 MSPKKSYSLETELVLNKSG--DQYNASVPPLYQSATFKQPSLSNMGEYDYTRSGNPTRTH 58

Query:    60 LESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV 119
             L++              +SGM  L  +T LL  G+E++AGDDLYGGT RLL+ ++ K  +
Sbjct:    59 LQNHIAKIMKAEHAFAVSSGMGCLDVITRLLKPGDEVIAGDDLYGGTHRLLTYLSKKGDI 118

Query:   120 VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH-AHGALLLV-DNS 177
             V    +T + + + S I   TK++++ESPTNP  ++ D++ IA+ AH A+  +++V DN+
Sbjct:   119 VAHHYDTTNTELIKSKINNKTKMIFLESPTNPLIKVVDVKSIADHAHKANRDIVVVFDNT 178

Query:   178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP 237
             +MSPVL  PL+LG DI   SATK++ GH D+MAGV+A +   LA++LY++ N+ G GL+P
Sbjct:   179 MMSPVLMTPLDLGVDIQYESATKYLNGHHDIMAGVIATRSSSLAEQLYYIINSTGCGLSP 238

Query:   238 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS 293
             FDCW+  RG+KT+A+RVEKQQ N  +IA+FL +     KV Y GL  HP +ELH S
Sbjct:   239 FDCWLLSRGLKTLAIRVEKQQQNCIRIAKFLENIGF--KVRYPGLKSHPQYELHSS 292

GO:0005777 "peroxisome" evidence=IEA

GO:0019346 "transsulfuration" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0004121 "cystathionine beta-lyase activity" evidence=IEA

TIGR_CMR|GSU_0944 GSU_0944 "cystathionine beta-lyase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 122/267 (45%), Positives = 182/267 (68%)

Query:    24 GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL 83
             GA++ P+YQTATF+ P   ++  YDY+RSGNPTR ALE              + SGMAA+
Sbjct:    19 GAVTVPIYQTATFRHPGLGQSTGYDYSRSGNPTRQALEEGIARLDGGARGFAYASGMAAI 78

Query:    84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
             A +  L  +G+ +V  +DLYGGT RL  ++  + G+    V+T D + V  AI P T+ +
Sbjct:    79 ANLLLLFKSGDHLVVTEDLYGGTCRLFDQILVQYGLSFTYVDTSDPEAVRDAIRPETRAL 138

Query:   144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
             +VES TNP  ++ DI  ++ +    G L +VDN+ ++P L RPL+LGADI ++S TK+++
Sbjct:   139 FVESLTNPLLKVADIAALSTLCRERGLLCIVDNTFLTPYLLRPLDLGADITVYSGTKYLS 198

Query:   204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
             GH+D ++G++ VK   LA+ +YFLQN+ G+ L P D W+ +RG+KT+++R+++QQ+NA +
Sbjct:   199 GHNDTVSGLVVVKEPALAERVYFLQNSVGAVLGPQDAWLTIRGMKTLSVRLDRQQENAGR 258

Query:   264 IAEFLASHPRVKKVNYAGLPEHPGHEL 290
             IAE+LA HPRV +V Y GLP HPGHEL
Sbjct:   259 IAEWLARHPRVPRVFYPGLPGHPGHEL 285

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

DICTYBASE|DDB_G0269122 cysA "cystathionine gamma-lyase" [Dictyostelium discoideum (taxid:44689)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 126/278 (45%), Positives = 175/278 (62%)

Query:    24 GALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAA 82
             GA+  P+  + TF QPS    +  YDY+RSGNPTR A E              F SG+A 
Sbjct:    25 GAVIVPISLSTTFLQPSPGVLHSEYDYSRSGNPTRKAFEECIAACENAKYALSFASGLAT 84

Query:    83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKL 142
             L  +THLL +G+E+++ DD+YGGT R  +RV     +    V+   LD++ +A    T+L
Sbjct:    85 LTTITHLLKSGDEVISIDDVYGGTRRYFTRVAANFDLKFSFVDLSTLDDLKNAFTDKTRL 144

Query:   143 VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFI 202
             VW+E+PTNP  ++ DI+ +A+  H+ GA L+VDN+ MSP    PL+LGADIVMHS TK+I
Sbjct:   145 VWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYI 204

Query:   203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQ 262
              GHSD + GVLA   + L  +L FLQN+ G+  +PFDC++ LRG+KT+ +R+E  Q NA 
Sbjct:   205 NGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAF 264

Query:   263 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG 300
              I  FL  HP+V++V Y GLP HP HE+   Q+    G
Sbjct:   265 AICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYGG 302

GO:0005615 "extracellular space" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080146 "L-cysteine desulfhydrase activity" evidence=IEA

GO:0044540 "L-cystine L-cysteine-lyase (deaminating)" evidence=IEA

GO:0004123 "cystathionine gamma-lyase activity" evidence=IEA;ISS

GO:0006534 "cysteine metabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0019344 "cysteine biosynthetic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 121/271 (44%), Positives = 183/271 (67%)

Query:    24 GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL 83
             G+++ P+YQT+T+KQ +  ++  Y+Y+R+GNPTR ALE              F SGMAA+
Sbjct:    19 GSVNVPIYQTSTYKQEAVGKHQGYEYSRTGNPTRAALEEMIAVLENGHAGFAFGSGMAAI 78

Query:    84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
              A   L   G+ ++  DD+YGGT R++++V  + G+    V+T +L+EV  AI P TK +
Sbjct:    79 TATIMLFSKGDHVILTDDVYGGTYRVITKVLNRFGIEHTFVDTTNLEEVEEAIRPNTKAI 138

Query:   144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
             +VE+PTNP  +I DI+KI+ +A   G L ++DN+ M+P    P+ LGADIV+HSATK++ 
Sbjct:   139 YVETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLG 198

Query:   204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
             GHSDV+AG++ V   +LA++L+F+QN+ G  L P D ++ LRG+KT+ +R+E+ + N++ 
Sbjct:   199 GHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRA 258

Query:   264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
             IAEFL +HP+V KV Y GL  H  HEL   Q
Sbjct:   259 IAEFLNNHPKVNKVYYPGLASHQNHELATEQ 289

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 121/271 (44%), Positives = 183/271 (67%)

Query:    24 GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL 83
             G+++ P+YQT+T+KQ +  ++  Y+Y+R+GNPTR ALE              F SGMAA+
Sbjct:    19 GSVNVPIYQTSTYKQEAVGKHQGYEYSRTGNPTRAALEEMIAVLENGHAGFAFGSGMAAI 78

Query:    84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
              A   L   G+ ++  DD+YGGT R++++V  + G+    V+T +L+EV  AI P TK +
Sbjct:    79 TATIMLFSKGDHVILTDDVYGGTYRVITKVLNRFGIEHTFVDTTNLEEVEEAIRPNTKAI 138

Query:   144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
             +VE+PTNP  +I DI+KI+ +A   G L ++DN+ M+P    P+ LGADIV+HSATK++ 
Sbjct:   139 YVETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLG 198

Query:   204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
             GHSDV+AG++ V   +LA++L+F+QN+ G  L P D ++ LRG+KT+ +R+E+ + N++ 
Sbjct:   199 GHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRA 258

Query:   264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
             IAEFL +HP+V KV Y GL  H  HEL   Q
Sbjct:   259 IAEFLNNHPKVNKVYYPGLASHQNHELATEQ 289

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|GSU_0945 GSU_0945 "cystathionine beta-lyase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 127/292 (43%), Positives = 182/292 (62%)

Query:    11 TLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXX 69
             T +++   E DP  GALS P+YQT+T++Q S    G YDY RS NPTR+ALE        
Sbjct:     5 TRIIHTGREIDPTTGALSVPIYQTSTYRQESVDHFGKYDYARSDNPTREALEETVAQLEN 64

Query:    70 XXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
                   F SGMAA+++   L   G+ +V  +D+YGGT R L+++  + GV    V+  D 
Sbjct:    65 GTRGFAFASGMAAISSTLLLFSPGDHLVVCEDVYGGTFRALTQLFSRLGVESTFVDATDT 124

Query:   130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL 189
               + +A  P TK +++E+P+NP  +I D+   A +A   GA+ LVDN+ M+P L RPL+L
Sbjct:   125 AAIEAAFRPNTKGLYLETPSNPLMKITDLAAAARLARERGAITLVDNTFMTPYLQRPLDL 184

Query:   190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT 249
             G D+V+HS TKF+ GHSDV+ G   V+   L + + F+QNA G+ L P D W+ LRG+KT
Sbjct:   185 GCDVVLHSGTKFLNGHSDVVCGFAVVRDPELGQRIRFIQNAFGAILGPQDSWLVLRGIKT 244

Query:   250 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNGP 301
             + +R+E+ Q  A KIA +LA   RV +V Y GLP+HPGH++H  Q    +GP
Sbjct:   245 LRVRMEESQAGAVKIANWLAGEKRVSRVFYPGLPDHPGHDIHGRQ---SSGP 293

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

UNIPROTKB|P66875 metB "Cystathionine gamma-synthase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 131/296 (44%), Positives = 177/296 (59%)

Query:     8 GVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESXXX 65
             G +T  ++     DP  GA++ P+Y ++TF Q       G ++Y R+GNPTR ALE+   
Sbjct:    13 GPATRAIHAGYRPDPATGAVNVPIYASSTFAQDGVGGLRGGFEYARTGNPTRAALEASLA 72

Query:    66 XXXXXXXXXCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
                       F+SGMAA   A+  +L  G+ +V  DD YGGT RL+ +V  +  V    V
Sbjct:    73 AVEEGAFARAFSSGMAATDCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTRWDVQYTPV 132

Query:   125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
                DLD V +AI P T+L+WVE+PTNP   I DI  IAE+     A +LVDN+  SP L 
Sbjct:   133 RLADLDAVGAAITPRTRLIWVETPTNPLLSIADITAIAELGTDRSAKVLVDNTFASPALQ 192

Query:   185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
             +PL LGAD+V+HS TK+I GHSDV+ G L    E L +E  FLQN  G+   PFD ++ +
Sbjct:   193 QPLRLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDEEFAFLQNGAGAVPGPFDAYLTM 252

Query:   245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG 300
             RG+KT+ LR+++  +NA  +AEFLA HP V  V Y GLP HPGHE+   Q+    G
Sbjct:   253 RGLKTLVLRMQRHSENACAVAEFLADHPSVSSVLYPGLPSHPGHEIAARQMRGFGG 308

GO:0000096 "sulfur amino acid metabolic process" evidence=TAS

GO:0003962 "cystathionine gamma-synthase activity" evidence=IDA

GO:0004123 "cystathionine gamma-lyase activity" evidence=IDA;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006790 "sulfur compound metabolic process" evidence=TAS

GO:0019279 "L-methionine biosynthetic process from L-homoserine via cystathionine" evidence=IMP

GO:0019343 "cysteine biosynthetic process via cystathionine" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
PLN02509	464	PLN02509, PLN02509, cystathionine beta-lyase	0.0
TIGR01329	378	TIGR01329, cysta_beta_ly_E, cystathionine beta-lya	1e-173
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	1e-149
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	1e-139
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	1e-127
PRK07811	388	PRK07811, PRK07811, cystathionine gamma-synthase;	1e-113
PRK08064	390	PRK08064, PRK08064, cystathionine beta-lyase; Prov	1e-111
PRK07671	377	PRK07671, PRK07671, cystathionine beta-lyase; Prov	1e-109
PRK08247	366	PRK08247, PRK08247, cystathionine gamma-synthase;	1e-102
PRK06176	380	PRK06176, PRK06176, cystathionine gamma-synthase/c	1e-100
TIGR02080	382	TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t	4e-85
COG2873	426	COG2873, MET17, O-acetylhomoserine sulfhydrylase [	3e-84
PRK08133	390	PRK08133, PRK08133, O-succinylhomoserine sulfhydry	4e-83
PRK06234	400	PRK06234, PRK06234, methionine gamma-lyase; Provis	9e-83
PRK08574	385	PRK08574, PRK08574, cystathionine gamma-synthase;	3e-82
PRK08249	398	PRK08249, PRK08249, cystathionine gamma-synthase;	5e-80
TIGR01328	391	TIGR01328, met_gam_lyase, methionine gamma-lyase	6e-80
PRK07503	403	PRK07503, PRK07503, methionine gamma-lyase; Provis	2e-79
TIGR01325	381	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul	3e-79
PRK07269	364	PRK07269, PRK07269, cystathionine gamma-synthase;	2e-76
TIGR01326	418	TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase	3e-75
PRK08045	386	PRK08045, PRK08045, cystathionine gamma-synthase;	4e-72
PRK07582	366	PRK07582, PRK07582, cystathionine gamma-lyase; Val	3e-70
PRK06767	386	PRK06767, PRK06767, methionine gamma-lyase; Provis	7e-70
PRK08861	388	PRK08861, PRK08861, cystathionine gamma-synthase;	9e-69
PRK08776	405	PRK08776, PRK08776, cystathionine gamma-synthase;	5e-68
PRK08134	433	PRK08134, PRK08134, O-acetylhomoserine aminocarbox	2e-66
PRK08248	431	PRK08248, PRK08248, O-acetylhomoserine aminocarbox	6e-65
PRK07504	398	PRK07504, PRK07504, O-succinylhomoserine sulfhydry	7e-65
PRK07812	436	PRK07812, PRK07812, O-acetylhomoserine aminocarbox	4e-64
PRK06460	376	PRK06460, PRK06460, hypothetical protein; Provisio	2e-63
PRK05994	427	PRK05994, PRK05994, O-acetylhomoserine aminocarbox	4e-63
PRK05968	389	PRK05968, PRK05968, hypothetical protein; Provisio	9e-63
PRK06434	384	PRK06434, PRK06434, cystathionine gamma-lyase; Val	3e-61
PRK07810	403	PRK07810, PRK07810, O-succinylhomoserine sulfhydry	5e-61
PRK06084	425	PRK06084, PRK06084, O-acetylhomoserine aminocarbox	2e-59
PRK05939	397	PRK05939, PRK05939, hypothetical protein; Provisio	6e-59
PRK05613	437	PRK05613, PRK05613, O-acetylhomoserine aminocarbox	1e-56
PRK07049	427	PRK07049, PRK07049, methionine gamma-lyase; Valida	3e-52
PRK05967	395	PRK05967, PRK05967, cystathionine beta-lyase; Prov	3e-48
TIGR01324	377	TIGR01324, cysta_beta_ly_B, cystathionine beta-lya	1e-46
PLN02242	418	PLN02242, PLN02242, methionine gamma-lyase	6e-44
PRK07050	394	PRK07050, PRK07050, cystathionine beta-lyase; Prov	5e-40
PRK09028	394	PRK09028, PRK09028, cystathionine beta-lyase; Prov	4e-38
PRK06702	432	PRK06702, PRK06702, O-acetylhomoserine aminocarbox	8e-36
PRK08114	395	PRK08114, PRK08114, cystathionine beta-lyase; Prov	2e-29
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	2e-12
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	5e-10
TIGR01976	397	TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa	6e-10
cd06454	349	cd06454, KBL_like, KBL_like; this family belongs t	5e-09
PRK05958	385	PRK05958, PRK05958, 8-amino-7-oxononanoate synthas	5e-09
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	3e-08
COG0156	388	COG0156, BioF, 7-keto-8-aminopelargonate synthetas	1e-07
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	2e-07
PRK00451	447	PRK00451, PRK00451, glycine dehydrogenase subunit	6e-07
cd00615	294	cd00615, Orn_deC_like, Ornithine decarboxylase fam	9e-07
COG0403	450	COG0403, GcvP, Glycine cleavage system protein P (	2e-06
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	4e-06
TIGR00858	360	TIGR00858, bioF, 8-amino-7-oxononanoate synthase	5e-06
PLN02855	424	PLN02855, PLN02855, Bifunctional selenocysteine ly	1e-05
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	1e-05
COG1921	395	COG1921, SelA, Selenocysteine synthase [seryl-tRNA	4e-05
PRK06108	382	PRK06108, PRK06108, aspartate aminotransferase; Pr	7e-05
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	1e-04
COG1982	557	COG1982, LdcC, Arginine/lysine/ornithine decarboxy	1e-04
PRK04366	481	PRK04366, PRK04366, glycine dehydrogenase subunit	1e-04
cd00613	398	cd00613, GDC-P, Glycine cleavage system P-protein,	2e-04
TIGR01825	385	TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-depe	2e-04
PRK05367	954	PRK05367, PRK05367, glycine dehydrogenase; Provisi	8e-04
pfam02347	429	pfam02347, GDC-P, Glycine cleavage system P-protei	8e-04
PRK09082	386	PRK09082, PRK09082, methionine aminotransferase; V	0.001
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	0.001
TIGR03947	359	TIGR03947, viomycin_VioD, capreomycidine synthase	0.001
COG1003	496	COG1003, GcvP, Glycine cleavage system protein P (	0.001
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	0.002
COG0075	383	COG0075, COG0075, Serine-pyruvate aminotransferase	0.003
TIGR01437	363	TIGR01437, selA_rel, uncharacterized pyridoxal pho	0.004

>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase

 Score =  593 bits (1531), Expect = 0.0
 Identities = 247/294 (84%), Positives = 277/294 (94%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT +LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKIAEMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQ
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQ 372

Length = 464

>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic

 Score =  483 bits (1246), Expect = e-173
 Identities = 209/293 (71%), Positives = 248/293 (84%), Gaps = 3/293 (1%)

Query: 9   VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD 68
           +STLL+N  N+ DPY A S P+YQTATFKQP A ENGPYDYTRSGNPTR ALESLLAKLD
Sbjct: 1   LSTLLVNTDNKNDPYDASSMPIYQTATFKQPLAIENGPYDYTRSGNPTRTALESLLAKLD 60

Query: 69  KADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD 128
           KADRA  F+SGMAAL  +T LL  G+EI+AGDDLYGGTDRLL++V P++GVVV  V+T D
Sbjct: 61  KADRAFAFSSGMAALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTD 120

Query: 129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE 188
           LD+V +A+GP TKLV +ESPTNP Q+I DIRKI+EMAHA  AL++VDN++MSP+L  PLE
Sbjct: 121 LDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPLE 180

Query: 189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248
           LGADIV HSATKF+AGHSDVMAGVLAVKGE +AK++YFLQN+ GSGLAPFDCW+ LRG+K
Sbjct: 181 LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIK 240

Query: 249 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNGP 301
           T+A+R+EKQQ+NA+ IA FL++HPRVKKV YAGLP HPG  LH+SQ     G 
Sbjct: 241 TLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQ---AKGA 290

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score =  422 bits (1088), Expect = e-149
 Identities = 158/293 (53%), Positives = 207/293 (70%), Gaps = 8/293 (2%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT-----ENGPYDYTRSGNPTRDALESL 63
           +TL ++     D   GA+  P+Y T+T+   +       E+G YDY+RSGNPTRDALE  
Sbjct: 1   ATLAVHAGQRPDRQTGAVVVPIYLTSTYVFDTVEALFAGEHGGYDYSRSGNPTRDALEER 60

Query: 64  LAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122
           +A L+  + AL F+SGMAA+ AA+  LL  G+ +VA DDLYGGT RL  +V P+ G+ V 
Sbjct: 61  IAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGIEVT 120

Query: 123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
            V+  DLD + +AI P TK V++E+PTNP  ++ DI  IA++A  HGAL++VDN+  SP 
Sbjct: 121 FVDPSDLDALEAAIKPNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFASPY 180

Query: 183 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLAPFDCW 241
           L RPLELGADIV+HSATK+I GHSDV+ GV+ V G E LAK L FLQNA G+ L+PFD W
Sbjct: 181 LQRPLELGADIVVHSATKYIGGHSDVVGGVVVVNGREELAKRLRFLQNATGAVLSPFDAW 240

Query: 242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           + LRG+KT+ LR+E+ Q+NA K+AEFL  HP+V+KV Y GLP HPGHEL   Q
Sbjct: 241 LLLRGLKTLGLRMERHQENALKLAEFLEEHPKVEKVYYPGLPSHPGHELAKKQ 293

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score =  396 bits (1020), Expect = e-139
 Identities = 153/280 (54%), Positives = 196/280 (70%), Gaps = 9/280 (3%)

Query: 24  GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNPTRDALESLLAKLDKADRALC 75
           GA++ P+YQT+TF  PS        A   G Y Y+R GNPT DALE  LA L+  + AL 
Sbjct: 1   GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALA 60

Query: 76  FTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS 134
           F+SGMAA++ V   LL  G+ +VA DDLYGGT RL  R+ PK G+ V  V+  D + + +
Sbjct: 61  FSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEA 120

Query: 135 AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
           AI P TKLV+VESPTNP  ++ DI  IAE+AH HGALL+VDN+  +P L RPLELGADIV
Sbjct: 121 AIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADIV 180

Query: 195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           +HSATK+I GHSDV+AGV+   GE L + L FL+ A G+ L+PFD W+ LRG+KT+ LR+
Sbjct: 181 VHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRM 240

Query: 255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           E+  +NA K+AEFL  HP+V++V Y GLP HP HEL   Q
Sbjct: 241 ERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQ 280

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score =  368 bits (948), Expect = e-127
 Identities = 148/302 (49%), Positives = 200/302 (66%), Gaps = 12/302 (3%)

Query: 5   EEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNP 55
            +  ++T L++     D   GA++ P+Y T+TF   SA         E G YDY+R+GNP
Sbjct: 4   AKLSLTTRLVHAGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNP 63

Query: 56  TRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           TRDALE  LA+L+  + A  F+SGMAA+  A+  LL  G+ ++  DDLYGGT RL  ++ 
Sbjct: 64  TRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKIL 123

Query: 115 PKTGV-VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL 173
            K GV V       D    A+   P TKLV++E+P+NP  ++ DI  IA +A A+GAL++
Sbjct: 124 QKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVV 183

Query: 174 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G 232
           VDN+  +PVL RPLELGADIV+HSATK++ GHSDV+ GV+    E L + L+F Q A  G
Sbjct: 184 VDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTG 243

Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           + L+PFD W+ LRG++T+ALR+E+  +NA KIAEFLA HP+VKKV Y GLP HPGHEL  
Sbjct: 244 AVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAK 303

Query: 293 SQ 294
            Q
Sbjct: 304 RQ 305

Length = 396

>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional

 Score =  331 bits (850), Expect = e-113
 Identities = 137/291 (47%), Positives = 184/291 (63%), Gaps = 5/291 (1%)

Query: 8   GVSTLLMNFSNEFDPY-GALSTPLYQTATFKQ--PSATENGPYDYTRSGNPTRDALESLL 64
           G +T  ++   E DP  GA++ P+Y ++TF Q        G Y+Y R+GNPTR ALE  L
Sbjct: 12  GFATRAIHAGYEPDPATGAVNPPIYASSTFAQDGVGGLRGG-YEYARTGNPTRTALEEQL 70

Query: 65  AKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           A L+       F+SGMAA    +  +L  G+ IV  +D YGGT RL+ +V  + GV    
Sbjct: 71  AALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTP 130

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183
           V+  DLD V +AI P TKL+WVE+PTNP   I DI  +AE+AH  GA ++VDN+  SP L
Sbjct: 131 VDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYL 190

Query: 184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243
            +PL LGAD+V+HS TK+I GHSDV+ G L    E L +   FLQN  G+   PFD ++ 
Sbjct: 191 QQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLT 250

Query: 244 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           LRG+KT+A+R+++  +NA+ +AEFLA HP V  V Y GLP HPGHE+   Q
Sbjct: 251 LRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQ 301

Length = 388

>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional

 Score =  327 bits (840), Expect = e-111
 Identities = 131/292 (44%), Positives = 195/292 (66%), Gaps = 1/292 (0%)

Query: 4   EEEPGVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALES 62
                + TLL++   + D   GA++ P+Y  +TF Q      G YDY+RSGNPTR+ALE 
Sbjct: 2   AMSYSIDTLLLHNQYKHDKQTGAVNVPIYHASTFHQFDFDTFGKYDYSRSGNPTREALED 61

Query: 63  LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122
           ++A+L+   +   F SGMAA++    LL  G+ ++  +D+YGGT R+++ V  + G+   
Sbjct: 62  IIAELEGGTKGFAFASGMAAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHT 121

Query: 123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
            V+  +L+EVA  I P TKL +VE+P+NP  ++ DIR + ++A A G L  VDN+ ++P+
Sbjct: 122 FVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPL 181

Query: 183 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242
           L +PL+LGAD+V+HSATKF+AGHSDV+AG+  VK E LA++LYFLQN+ G+ L   DCW+
Sbjct: 182 LQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL 241

Query: 243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
            LRG+KT+ +R+E   + A KIA +L  HP+V+ V Y GL  H G ++  SQ
Sbjct: 242 VLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQ 293

Length = 390

>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional

 Score =  322 bits (827), Expect = e-109
 Identities = 130/271 (47%), Positives = 189/271 (69%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQ +T+KQ +  ++  Y+Y+R+GNPTR ALE L+A L+       F SGMAA+
Sbjct: 19  GAVSVPIYQVSTYKQEAVGKHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L  +G+ ++  DD+YGGT R++++V  + G+    V+T +L+EV  AI P TK +
Sbjct: 79  TAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAI 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           +VE+PTNP  +I DI+KI+ +A   G L +VDN+ M+P    P+ LGADIV+HSATK++ 
Sbjct: 139 YVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++ V    LA++L+F+QN+ G  L P D W+ LRG+KT+ +R+E+ + N++ 
Sbjct: 199 GHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGIRMEEHETNSRA 258

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           IAEFL +HP V KV Y GLP HP HEL   Q
Sbjct: 259 IAEFLNNHPAVNKVYYPGLPSHPNHELAKEQ 289

Length = 377

>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed

 Score =  303 bits (779), Expect = e-102
 Identities = 121/274 (44%), Positives = 172/274 (62%), Gaps = 1/274 (0%)

Query: 9   VSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKL 67
           + T L    N  D   G ++ P+Y +  ++     E+  +DY+R+GNPTR  LE  +A L
Sbjct: 5   IETKLAQIGNRSDERTGTVNPPVYFSTAYRHEGIGESTGFDYSRTGNPTRGVLEQAIADL 64

Query: 68  DKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
           +  D+    +SGMAA+  V  L  +G+E++   DLYGGT RL      K  V    VNT 
Sbjct: 65  EGGDQGFACSSGMAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA 124

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
            L  +  AI P TK +++E+PTNP  Q  DI  IA++A  HG LL+VDN+  +PVL RPL
Sbjct: 125 SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL 184

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
           E GADIV+HSATK++ GH+DV+AG++  KG+ L + L + QNA G+ L+PFD W+ +RG+
Sbjct: 185 EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGM 244

Query: 248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 281
           KT+ALR+ + ++NA+ IA FL   P V  V Y G
Sbjct: 245 KTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG 278

Length = 366

>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated

 Score =  298 bits (765), Expect = e-100
 Identities = 128/272 (47%), Positives = 180/272 (66%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T++Q +      Y+Y+RSGNPTR ALE L+A L+   +   F SG+A +
Sbjct: 19  GAVSVPIYQTSTYRQDAIGRPKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L  +G+ ++ GDD+YGGT RL  +V  K G+    ++T DL ++  AI P TK +
Sbjct: 79  HAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKAL 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+P+NP  +I D+ + A +A  HG L +VDN+  +P    PL LGADIV+HS TK++ 
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR+E  Q NA  
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALC 258

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           +AEFL  HP+V+KV Y GLP HP HEL   Q+
Sbjct: 259 VAEFLEKHPKVEKVYYPGLPTHPNHELAKKQM 290

Length = 380

>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase

 Score =  260 bits (665), Expect = 4e-85
 Identities = 119/273 (43%), Positives = 171/273 (62%), Gaps = 1/273 (0%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           YG +  P+Y + T+      E   YDY+RSGNPTRD L+  LA+L+    A+   +GM+A
Sbjct: 19  YGCVVPPIYLSTTYNFTGFNEPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSA 78

Query: 83  LAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTK 141
           +  V T LLG  + +VA  D YGGT RLL+ +  K    V  V+  D   + +A+    K
Sbjct: 79  IHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPK 138

Query: 142 LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 201
           LV +E+P+NP  ++ DI KI  +A A GA+++VDN+ +SP L  PL LGAD+V+HS TK+
Sbjct: 139 LVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKY 198

Query: 202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNA 261
           + GHSDV+AG +  K  ++A+EL +  N  G     FD ++ LRG++T+  R+  QQ NA
Sbjct: 199 LNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVARMRLQQRNA 258

Query: 262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           Q I E+L + P VKK+ Y GLP+HPGHE+   Q
Sbjct: 259 QAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQ 291

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382

>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

 Score =  259 bits (664), Expect = 3e-84
 Identities = 118/342 (34%), Positives = 166/342 (48%), Gaps = 48/342 (14%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATE-------NGP-YDYTRSGNP 55
               G  TL ++   E    GA + P+YQT ++                P   YTR  NP
Sbjct: 3   SANWGFETLAVHAGQEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNP 62

Query: 56  TRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T D LE  +A L+    AL   SG AA+      L G G+ IV+   LYGGT  L S   
Sbjct: 63  TTDVLEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTL 122

Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
            + G+ V+ V+  D +   +AI   TK V+ E+  NP   + DI  IAE+AH HG  L+V
Sbjct: 123 KRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIV 182

Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL--------------------- 213
           DN+  +P L RP+E GADIV+HSATK+I GH   + GV+                     
Sbjct: 183 DNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPD 242

Query: 214 ----AVKGERLAKELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQ 262
                +          F+  A        G+ L+PF+ ++ L+G++T++LR+E+  +NA 
Sbjct: 243 PSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENAL 302

Query: 263 KIAEFLASHPRVKKVNYAGLPEHPGHEL-------HYSQVLS 297
           K+AEFL +HP+V  VNY GL  HP H L           VL+
Sbjct: 303 KVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLT 344

Length = 426

>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated

 Score =  255 bits (653), Expect = 4e-83
 Identities = 113/282 (40%), Positives = 168/282 (59%), Gaps = 10/282 (3%)

Query: 22  PYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADRA 73
           P+G  S  L+ T++F   SA E             Y+R  NPT    +  LA L+ A+  
Sbjct: 20  PFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEAC 79

Query: 74  LCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEV 132
           +   SGMAA LA V  LL  G+ +V+   L+G T  L  ++  + G+    V+  DLD  
Sbjct: 80  VATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAW 139

Query: 133 ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 192
            +A+ P TKL ++E+P+NP  ++ DI  +AE+AHA GALL+VDN   +P L +PL+LGAD
Sbjct: 140 RAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGAD 199

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL 252
           +V+HSATK++ G   V+ G +    E + +   FL+ A G  L+PF+ W+ L+G++T++L
Sbjct: 200 VVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTA-GPTLSPFNAWVFLKGLETLSL 258

Query: 253 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           R+E    NA  +AE+L +HP V++V Y GLP HP HEL   Q
Sbjct: 259 RMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQ 300

Length = 390

>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional

 Score =  254 bits (651), Expect = 9e-83
 Identities = 115/286 (40%), Positives = 179/286 (62%), Gaps = 14/286 (4%)

Query: 23  YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADRAL 74
           +G+L+TP+YQT+TF   SA + G         Y Y+R GNPT   +E+ LA L+  + A+
Sbjct: 24  FGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAV 83

Query: 75  CFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA 133
              SGM A+ +++   L  G+ +VA D LYG T  LL+    + GV V  V+T +L+EV 
Sbjct: 84  VAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVR 143

Query: 134 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGA 191
           +A+   TK+V++E+P NP  ++ DI+ I+ +AH +    L+ VDN+  +P + RPL+LGA
Sbjct: 144 NALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGA 203

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVKT 249
           D+V+HSATK++ GH DV+AG   V  E    ++    +++  GS + PF+ ++ +RG+KT
Sbjct: 204 DVVVHSATKYLNGHGDVIAG-FVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT 262

Query: 250 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           + +R+EK   NA K+A+FL SHP V+KV Y GL     +EL   Q+
Sbjct: 263 LQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQM 308

Length = 400

>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional

 Score =  252 bits (646), Expect = 3e-82
 Identities = 115/276 (41%), Positives = 166/276 (60%), Gaps = 8/276 (2%)

Query: 21  DPYGALSTPLYQTATFKQP---SATENG-PYDYTRSGNPTRDALESLLAKLDKADRALCF 76
           DPYG+L  P+Y TA F+Q      ++ G    Y+R  NPT   LE  LAKL+    AL F
Sbjct: 15  DPYGSLQPPIYLTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAF 74

Query: 77  TSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA 135
            SGMAA++ +   LL  G+ +V   + YG T RLL  +  K GV V        +++  A
Sbjct: 75  NSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLE-KFGVKVVLAYP-STEDIIEA 132

Query: 136 I-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
           I    TKLV++E+ TNP  ++ D+ ++A+ A   GA+L+VDN+  +P+L RPL  GAD V
Sbjct: 133 IKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFV 192

Query: 195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           +HS TK+IAGH+DV+ GV         +EL+  +   G+ + PF+ ++ LRG+KT+ +R 
Sbjct: 193 VHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLEVRF 252

Query: 255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL 290
           E+Q  NA  IAEFL+ HP+V +V Y GLP  P H +
Sbjct: 253 ERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGV 288

Length = 385

>gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional

 Score =  247 bits (633), Expect = 5e-80
 Identities = 103/285 (36%), Positives = 170/285 (59%), Gaps = 10/285 (3%)

Query: 19  EFDPYGALSTPLYQTATFK-------QPSATENGP-YDYTRSGNPTRDALESLLAKLDKA 70
           E+ PYGA   P+  +  +           A    P + Y+R+ NPT  A E  +  L+ A
Sbjct: 20  EYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGA 79

Query: 71  DRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
           + A  F++GMAA++   +  L  G+ +V+  D YGGT+++ +   P+ GV V    T D 
Sbjct: 80  EAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDH 139

Query: 130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL 189
           +++ + I     L+++E+PTNP  +I DI ++A  A   GAL++VDN+  +P+   PL L
Sbjct: 140 EQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPLAL 199

Query: 190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT 249
           GAD+V+HSATKF++GH+D + GV     + L +++Y  +   G+ + P   ++ LRG+KT
Sbjct: 200 GADLVIHSATKFLSGHADALGGV-VCGSKELMEQVYHYREINGATMDPMSAYLILRGMKT 258

Query: 250 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           + LRV +QQ++A  +A++L +HP+V+ V Y GL  HP HE+  +Q
Sbjct: 259 LKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQ 303

Length = 398

>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase

 Score =  247 bits (631), Expect = 6e-80
 Identities = 112/285 (39%), Positives = 179/285 (62%), Gaps = 10/285 (3%)

Query: 21  DPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADR 72
           D +GAL+ P+YQT+TF   S  + G         Y Y+R GNPT   LE  +A L+  + 
Sbjct: 17  DQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEA 76

Query: 73  ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
           A+  +SGM A+AA +  +L  G+ +++ + LYG T  LL     K G+ V  +N    +E
Sbjct: 77  AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEE 136

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
           V + I   TK+V+ E+P NP  ++ D+ ++   AH+ G  ++VDN+  +P+L+ P+ LG 
Sbjct: 137 VKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGV 196

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTM 250
           D+V+HSATK+I GH DV+AG++  K E L +  +  +++  GS ++PFD W+ LRG+KT+
Sbjct: 197 DVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL 256

Query: 251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
            +R+++  +NA K+AE+L SHP V+KV Y G  +HPGH++   Q+
Sbjct: 257 NIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQM 301

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391

>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional

 Score =  246 bits (629), Expect = 2e-79
 Identities = 118/290 (40%), Positives = 173/290 (59%), Gaps = 15/290 (5%)

Query: 20  FDP---YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLD 68
           +DP    GAL  P+Y TATF  P+A         E   + Y+R  NPT   LE  +A L+
Sbjct: 19  YDPLDHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLE 78

Query: 69  KADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
             + A+   SGM A+ A    LL  G+E++    LYG T   L     + GV V+ V+  
Sbjct: 79  GGEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT 138

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
           D   + +AI   T++V+ E+P NP  ++ DI  +AE+AH  GA ++VDN+  +P L RPL
Sbjct: 139 DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPL 198

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE--LYFLQNAEGSGLAPFDCWICLR 245
           ELGAD+V+HSATK++ GH D+ AG L V G+ LA    L  L++  G+ ++PFD ++ +R
Sbjct: 199 ELGADLVVHSATKYLGGHGDITAG-LVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMR 257

Query: 246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           G+KT+ALR+++   +AQ +AE+LA HP V+ V+Y GLP    H L   Q+
Sbjct: 258 GLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQM 307

Length = 403

>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase

 Score =  244 bits (625), Expect = 3e-79
 Identities = 114/293 (38%), Positives = 168/293 (57%), Gaps = 9/293 (3%)

Query: 11  TLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALES 62
           TL +        +   +  LY T+ +   SA         E   + Y+R GNPT    E 
Sbjct: 2   TLAVRGGMLRSGFEETAEALYLTSGYVYDSAAVAAKRFAGELPGFVYSRYGNPTVSVFEE 61

Query: 63  LLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV 121
            LA L+ A+ A+   SGMAA  AA+  LLG G+ +VA   L+G    + S + P+ GV  
Sbjct: 62  RLALLEGAEAAVATASGMAAIFAALMALLGAGDHVVASRSLFGSCFVVCSEILPRFGVQT 121

Query: 122 KRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP 181
             V+  DL    +A+ P TK V+VE+P+NP Q++ DI  +AE+AHA GA ++VDN   +P
Sbjct: 122 VFVDGTDLSAWEAALKPNTKAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDNVFATP 181

Query: 182 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 241
           +L +PL+LGAD+V++SATK I G   V+ G +    E + + +  L    G  ++PF+ W
Sbjct: 182 LLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEYMDEPVQKLLRHTGPAMSPFNAW 241

Query: 242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           + L+G++T+A+RV+ Q  +A  IAE+L  HP V+ V Y GLP HP HEL   Q
Sbjct: 242 VLLKGLETLAIRVQHQNASALAIAEWLNGHPSVQWVYYPGLPSHPQHELAKRQ 294

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381

>gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed

 Score =  237 bits (605), Expect = 2e-76
 Identities = 110/259 (42%), Positives = 169/259 (65%), Gaps = 2/259 (0%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GAL TPL+ + T++ P   ++  +DYTR+ NPTR  LE  LA ++ AD AL  +SGM+A+
Sbjct: 23  GALVTPLHFSTTYQHPEFGQSTGFDYTRTKNPTRAKLEETLAAIESADYALATSSGMSAI 82

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
                +   G ++VA  DLYGG+ R  ++   +        NT   +E+ +AI   T +V
Sbjct: 83  VLAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYANT--EEELIAAIEEDTDIV 140

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+PTNP     DI K+A++AHA GA ++VDN+  SP+  RP+ELGADIV+HSATK+++
Sbjct: 141 YIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLS 200

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GH+DV+AGV+      L ++L++  N  G+ L+PFD ++ +RG+KT++LR+E+   NAQ+
Sbjct: 201 GHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLSLRMERSTANAQE 260

Query: 264 IAEFLASHPRVKKVNYAGL 282
           +  FL   P VK+V Y G 
Sbjct: 261 VVAFLKKSPAVKEVLYTGK 279

Length = 364

>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase

 Score =  235 bits (602), Expect = 3e-75
 Identities = 118/332 (35%), Positives = 169/332 (50%), Gaps = 43/332 (12%)

Query: 11  TLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALE 61
           TL ++   E DP  G+ + P+YQT ++   S                Y+R  NPT D LE
Sbjct: 4   TLQLHAGQEPDPTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLE 63

Query: 62  SLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
             +A L+    AL   SG AA   A+ +L   G+ IV+   LYGGT  L      + G+ 
Sbjct: 64  QRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIE 123

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           V+ V+  D +E   AI   TK V+ E+  NP   + DI  IAE+AHAHG  L+VDN+  +
Sbjct: 124 VRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFAT 183

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------ERLAK------------ 222
           P L RP++ GADIV+HSATK+I GH   + GV+   G       R               
Sbjct: 184 PYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLV 243

Query: 223 ------ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA 269
                    F+  A        G+ L+PF+ ++ L+G++T++LR+E+  +NA K+AEFL 
Sbjct: 244 FTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLE 303

Query: 270 SHPRVKKVNYAGLPEHPGHELHYSQVLSDNGP 301
           +HP+V  VNY GL  HP H L  ++     G 
Sbjct: 304 AHPKVAWVNYPGLASHPHHAL--AKKYLPKGF 333

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418

>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional

 Score =  227 bits (579), Expect = 4e-72
 Identities = 111/283 (39%), Positives = 167/283 (59%), Gaps = 11/283 (3%)

Query: 18  NEFDPYGALSTPLYQTAT-----FKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADR 72
           N+ + YG +  P++ ++T     F +P A     +DY+R GNPTRD ++  LA+L+    
Sbjct: 15  NDDEQYGCVVPPIHLSSTYNFTGFNEPRA-----HDYSRRGNPTRDVVQRALAELEGGAG 69

Query: 73  ALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
           A+   +GM+A+  V T  L  G+ +VA  D YGG+ RL   +  +    V  V+  D   
Sbjct: 70  AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQA 129

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
           + +A+    KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL LGA
Sbjct: 130 LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGA 189

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 251
           D+V+HS TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG++T+ 
Sbjct: 190 DLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV 249

Query: 252 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
            R+E  Q NAQ I ++L + P VKK+ +  LPE+ GHE+   Q
Sbjct: 250 PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQ 292

Length = 386

>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated

 Score =  221 bits (565), Expect = 3e-70
 Identities = 103/273 (37%), Positives = 141/273 (51%), Gaps = 5/273 (1%)

Query: 19  EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS 78
           E  P   +       A +        GP  Y R+ NPT  ALE+ L +L+    AL F S
Sbjct: 15  EAVPGEPVLPGPVFAAPYHLSPGEPTGPDTYGRASNPTWRALEAALGELE-GAEALVFPS 73

Query: 79  GMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG 137
           GMAA+ AV   LL  G+ +V   D Y     L        GV V+   T  +   A A  
Sbjct: 74  GMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGM---AEAAL 130

Query: 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 197
               LV  E+P+NP   +CD+  +A  AHA GALL+VDN+  +P+  RPLELGAD+V+ S
Sbjct: 131 AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVAS 190

Query: 198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
            TK + GHSD++ G +A +   L   +   +   G+   PF+ W+  R + T+ LR  +Q
Sbjct: 191 DTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTLGLRFARQ 250

Query: 258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL 290
             NA  +AE LA HP V+ V Y GLP  P HE+
Sbjct: 251 CANALAVAELLAGHPAVRGVRYPGLPGDPAHEV 283

Length = 366

>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional

 Score =  221 bits (564), Expect = 7e-70
 Identities = 107/272 (39%), Positives = 161/272 (59%), Gaps = 12/272 (4%)

Query: 23  YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADRAL 74
            G+L+ PL+QT+TF   +A +           Y Y+R GNPT    E  +A L+  + AL
Sbjct: 21  KGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEAL 80

Query: 75  CFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA 133
            F SGMAA++A     L  G+ I+  + LYG T   L  +  K  +     +     ++ 
Sbjct: 81  AFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIE 140

Query: 134 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADI 193
           + I P TKL++VE+P NP  ++ D++++  +A  +G L++VDN+  SP L RPLELG D 
Sbjct: 141 NKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDA 200

Query: 194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALR 253
           V+HSATK+I GH DV+AGV   K   LA+++  ++   G  +APFD W+ LRG+KT+A+R
Sbjct: 201 VVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTLAVR 260

Query: 254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH 285
           +++  DNA+KI  FL +H  V+ V Y   PE 
Sbjct: 261 MDRHCDNAEKIVSFLKNHDAVEGVWY---PEG 289

Length = 386

>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional

 Score =  218 bits (556), Expect = 9e-69
 Identities = 111/273 (40%), Positives = 165/273 (60%), Gaps = 1/273 (0%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           Y A+  P+Y +  +  P+  E   YDYTRSGNP R  LE  L++L+    A+    G +A
Sbjct: 21  YHAVVPPIYLSTNYGFPAFGEVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSA 80

Query: 83  LAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTK 141
           L   V+ LLG  + IVA  D YGGT RL +    K    V+ V+  D   + +A+    K
Sbjct: 81  LNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPK 140

Query: 142 LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 201
           L+ +E+P+NP  ++ DI ++ + A A GAL+ VDN+ ++PVL +PLELGAD V+HS TK+
Sbjct: 141 LILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKY 200

Query: 202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNA 261
           I GHSDV+ GVL  K +  A+EL +  N  G+   PFD ++ LRG++T+  R+   +++A
Sbjct: 201 INGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGARMRVHEESA 260

Query: 262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           Q+I  +L +   V  + +  LPEHPGHE+   Q
Sbjct: 261 QQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQ 293

Length = 388

>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional

 Score =  216 bits (552), Expect = 5e-68
 Identities = 110/273 (40%), Positives = 158/273 (57%), Gaps = 1/273 (0%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           YGA++ P+  ++ F          YDYTRSGNPTRD L   LA+L+     +   +GM A
Sbjct: 28  YGAVTPPIVLSSNFSFDGFGNKRQYDYTRSGNPTRDLLGEALAELEGGAGGVITATGMGA 87

Query: 83  LAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTK 141
           +  V + LL  G+ +V   D YGG+ RL + +  K    +   +  D   +A A+    K
Sbjct: 88  INLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPK 147

Query: 142 LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 201
           LV +E+P+NP  +I D+R + E AH  GAL +VDN+ +SP L +PLE GAD+V+HS TK+
Sbjct: 148 LVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKY 207

Query: 202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNA 261
           I GHSDV+ G +  +   L ++L +  NA G   +PFD ++ LRG++T+  R+   Q+NA
Sbjct: 208 INGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTLDARLRVHQENA 267

Query: 262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
             IA  L  H  V +V Y GL  HPGH L   Q
Sbjct: 268 DAIAALLDGHAAVNQVYYPGLASHPGHALAARQ 300

Length = 405

>gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  213 bits (544), Expect = 2e-66
 Identities = 116/333 (34%), Positives = 162/333 (48%), Gaps = 44/333 (13%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           M     PG  TL ++     DP  GA + P++ T +F    +         E   + Y+R
Sbjct: 1   MPGMSPPGFDTLALHAGAAPDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSR 60

Query: 52  SGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLL 110
             NPT   LE  +A L+    A+   SG AAL  A+  L+G G  IVA   LYGG+  LL
Sbjct: 61  ISNPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLL 120

Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
                + G+    V   D+D   +AI P T+L++ E+  NP  ++ DI  +A +AH  G 
Sbjct: 121 HYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGV 180

Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL---------- 220
            LLVD++  +P L RP E GAD+V HSATKF+ GH   + GVL V G R           
Sbjct: 181 PLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVL-VDGGRFDWEASGKFPE 239

Query: 221 AKELY----------------FLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQ 257
             E Y                FL  A        G+ L+P + W  L+G++T+ LR+E+ 
Sbjct: 240 LTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERH 299

Query: 258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL 290
             N +K+  FLASHP V +V +  L  HP H L
Sbjct: 300 VANTRKVVAFLASHPAVARVAHPELESHPDHAL 332

Length = 433

>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  209 bits (534), Expect = 6e-65
 Identities = 118/333 (35%), Positives = 175/333 (52%), Gaps = 44/333 (13%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPY-GALSTPLYQTAT--FKQP-------SATENGPYDYT 50
           MS E    + TL ++   E DP  G+ + P+YQT +  F+         S  E G   YT
Sbjct: 1   MSEERTFRLETLAIHAGQEIDPTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFG-NIYT 59

Query: 51  RSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRL 109
           R  NPT D  E  +A L+    AL  +SG AA+  ++ ++   G+EIV+   LYGGT  L
Sbjct: 60  RIMNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNL 119

Query: 110 LSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG 169
            +   PK G+ VK V+  D +   +AI   TK ++ E+  NP+  + DI  +A +AH HG
Sbjct: 120 FAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHG 179

Query: 170 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------------ 217
             L+VDN+  SP L RP+E GADIV+HSATKFI GH   + GV+   G            
Sbjct: 180 IPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPG 239

Query: 218 --------------ERLAKELYFLQ------NAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
                         + + +  Y  +         G+ L+PF+ ++ L+G++T+ LR+E+ 
Sbjct: 240 LTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERH 299

Query: 258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL 290
            +NA  +A+FL  H  V+ V+Y GLP HP +EL
Sbjct: 300 SENALAVAKFLEEHEAVEWVSYPGLPSHPSYEL 332

Length = 431

>gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed

 Score =  208 bits (531), Expect = 7e-65
 Identities = 100/276 (36%), Positives = 155/276 (56%), Gaps = 13/276 (4%)

Query: 22  PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRA 73
            +G  S  L+ T  F   +A         E+  + Y+R  NPT D  E  +  L+ A+ A
Sbjct: 24  QFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDA 83

Query: 74  LCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEV 132
               SGMAA+ AA+   +  G+ +VA   L+G    ++  + P+ G+    V+  DLD  
Sbjct: 84  RATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNW 143

Query: 133 ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 192
             A+ P TK+ ++ESPTNP  ++ DI  +A++A+  GA L+VDN   +P+  +PLELGA 
Sbjct: 144 EKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAH 203

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKEL--YFLQNAEGSGLAPFDCWICLRGVKTM 250
           IV++SATK I G    + GV+      + + L  YF     G  L+PF+ W  L+G++T+
Sbjct: 204 IVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHT--GPSLSPFNAWTLLKGLETL 261

Query: 251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP 286
            +RV +Q ++A  IA+FLA HP+V +V Y G  +HP
Sbjct: 262 PVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHP 297

Length = 398

>gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  207 bits (529), Expect = 4e-64
 Identities = 114/309 (36%), Positives = 162/309 (52%), Gaps = 44/309 (14%)

Query: 24  GALSTPLYQTATF----KQPSA-----TENGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
            A + P+YQT ++       +A      E G   YTR  NPT+D +E  +A L+    AL
Sbjct: 30  NARALPIYQTTSYTFDDTDHAAALFGLAEPGNI-YTRIMNPTQDVVEQRIAALEGGVAAL 88

Query: 75  CFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NTCDLDEV 132
              SG AA   A+ +L G G+ IV+   LYGGT  L     PK G+ V  V +  DLD  
Sbjct: 89  LLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAW 148

Query: 133 ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 192
            +A+ P TK  + E+ +NP+  + DI  +AE+AH  G  L+VDN+I +P L RPLE GAD
Sbjct: 149 RAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGAD 208

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERL-------------------------------A 221
           IV+HSATK++ GH   +AGV+ V G                                   
Sbjct: 209 IVVHSATKYLGGHGTAIAGVI-VDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYAL 267

Query: 222 KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 281
           K    L    GS ++PF+ ++  +G++T++LR+E+   NAQ++AEFL +   V  VNYAG
Sbjct: 268 KARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAG 327

Query: 282 LPEHPGHEL 290
           LP  P +E 
Sbjct: 328 LPSSPWYER 336

Length = 436

>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional

 Score =  204 bits (520), Expect = 2e-63
 Identities = 100/281 (35%), Positives = 164/281 (58%), Gaps = 6/281 (2%)

Query: 21  DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM 80
           +  GA++TP+YQT  +  P   E   Y Y+R  NPT   L   + +L+ A+  + F+SGM
Sbjct: 14  EATGAITTPIYQTTAYHYP---EGEKYRYSREANPTVLELTKKIVELENAEMGVAFSSGM 70

Query: 81  AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
            A++     LL  G  ++   D++G + R  +      GV V   N    + +  A    
Sbjct: 71  GAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKR 130

Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
             +V+VE+ TNP  ++ DI +++++   +G++L+VD +  +P+  +PLELGADIV+HSA+
Sbjct: 131 YDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSAS 190

Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 259
           KF+AGH+DV+AG+ A  G+ L   +  ++   G+ L P   ++ LRG+KT+ +R++    
Sbjct: 191 KFLAGHNDVIAGLAAGYGK-LLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKIRMDVINR 249

Query: 260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG 300
           NA++IAEFL  HP+V KV Y GL  H  +E+   +VL   G
Sbjct: 250 NAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIA-RRVLKGFG 289

Length = 376

>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  204 bits (522), Expect = 4e-63
 Identities = 117/327 (35%), Positives = 161/327 (49%), Gaps = 42/327 (12%)

Query: 7   PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPY--------DYTRSGNPTR 57
           PG +TL ++   + DP  GA +TP+YQT +F    A               YTR  NPT 
Sbjct: 6   PGFATLAVHAGAQPDPTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTN 65

Query: 58  DALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPK 116
             LE  +A L+    AL   SG AA   V H LL  G+E +A   LYGG+          
Sbjct: 66  AVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKS 125

Query: 117 TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176
            G  V+  +  D      AI P TK +++ES  NP   + DI  IAE+AH  G  L+VDN
Sbjct: 126 FGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDN 185

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA---------------------- 214
           ++ SP L RP+E GADIV+HS TKF+ GH + M G++                       
Sbjct: 186 TLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPE 245

Query: 215 VKGERLAK---ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKI 264
             G  L +      F   A        G  ++PF+ ++ L G++T+ LR+++  DNA  +
Sbjct: 246 YHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAV 305

Query: 265 AEFLASHPRVKKVNYAGLPEHPGHELH 291
           AE+L  HP+V  VNYAGLP+ P H L 
Sbjct: 306 AEWLKGHPKVSWVNYAGLPDDPYHALA 332

Length = 427

>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional

 Score =  203 bits (517), Expect = 9e-63
 Identities = 107/284 (37%), Positives = 167/284 (58%), Gaps = 20/284 (7%)

Query: 17  SNEFDPYGALSTPLYQTATFKQPS--------ATENGPYDYTRSGNPTRDALESLLAKLD 68
            +E + + A+  P++QT+ F   S        A E     Y+R  NPT  A E +LAKL+
Sbjct: 17  HDEGNAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLE 76

Query: 69  KADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
            A+ A  F SGMAA+++ V   +  G+ IVA   +Y    RL   +  + GV V  V+  
Sbjct: 77  GAEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR 136

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
           D + VA A+ P  KL+++ESPT+   ++ D+  +A +A  HG + ++DNS  SPV  RP+
Sbjct: 137 DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI 195

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-----GSGLAPFDCWI 242
            LG D+V+HSA+K++ GHSD +AGV+A   E +A+      NAE     G+ L+PF+ W+
Sbjct: 196 TLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIAR-----INAEAYPYLGAKLSPFEAWL 250

Query: 243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP 286
            LRG++T+ LR++  + +A +IA  L +HP V++V +  L  HP
Sbjct: 251 LLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHP 294

Length = 389

>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated

 Score =  198 bits (506), Expect = 3e-61
 Identities = 99/277 (35%), Positives = 151/277 (54%), Gaps = 23/277 (8%)

Query: 21  DP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKAD 71
           DP +G ++TP+++T+TF  P++        T   PY YTR GNPT  A E   A L+ A+
Sbjct: 21  DPRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAE 80

Query: 72  RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK-----RVN 125
            AL F+SGM A+ +A+  L+  G+ I++  DLYG T    ++V    G+ V      R+N
Sbjct: 81  HALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLN 140

Query: 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR 185
           + D D           L++ ES TNP  ++ DI+ ++     H   ++VD +  SP    
Sbjct: 141 SLDFDPSN------YDLIYAESITNPTLKVPDIKNVSS--FCHENDVIVDATFASPYNQN 192

Query: 186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245
           PL+LGAD+V+HSATK+I+GHSDV+ GV     + +   L   +   GS   P   ++ LR
Sbjct: 193 PLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALR 252

Query: 246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 282
           G+KT+ LR+EK   N  ++A FL    ++  V Y   
Sbjct: 253 GLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDT 289

Length = 384

>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional

 Score =  198 bits (506), Expect = 5e-61
 Identities = 99/277 (35%), Positives = 151/277 (54%), Gaps = 9/277 (3%)

Query: 27  STPLYQTATFKQPSATE-----NGPYD---YTRSGNPTRDALESLLAKLDKADRALCFTS 78
           +  LY T+ +   SA        G  D   Y+R GNPT    E  L  ++ A+      S
Sbjct: 34  AEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFATAS 93

Query: 79  GMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG 137
           GM+A+  A+  LLG G+ +VA   L+G    + + + P+ GV    V+  DL +   A+ 
Sbjct: 94  GMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALS 153

Query: 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 197
             T+ V+ E+P+NP Q + DI  ++E+AHA GA +++DN   +P+L R L LGAD+V++S
Sbjct: 154 VPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYS 213

Query: 198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
            TK I G   V+ G +    E +   +  L    G  L+ F+ W+ L+G++T+ALRV   
Sbjct: 214 GTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLALRVRHS 273

Query: 258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
             +A +IAEFL  HP V+ V Y  LP HP ++L   Q
Sbjct: 274 NASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQ 310

Length = 403

>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  195 bits (496), Expect = 2e-59
 Identities = 113/310 (36%), Positives = 166/310 (53%), Gaps = 46/310 (14%)

Query: 25  ALSTPLYQTATFKQPSATENGP--YD-------YTRSGNPTRDALESLLAKLDKADRALC 75
           A++ P+YQT ++     T++G   +D       YTR  NPT D LE  +A L+    AL 
Sbjct: 20  AVAVPIYQTTSYAFDD-TQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALA 78

Query: 76  FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS 134
             SGMAA+  A+  +   G+ IV+   LYGGT  LL+   P+ G+  +     D+  + +
Sbjct: 79  VASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEA 138

Query: 135 AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
            I   TK V+ ES  NP   I DI+ +A+ AH HG  L+VDN++ +PVL RP E GADIV
Sbjct: 139 LIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIV 198

Query: 195 MHSATKFIAGHSDVMAGVLAVKG---------------------------ERLAKELYF- 226
           +HS TK+I GH   + G++   G                           E      +  
Sbjct: 199 VHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIG 258

Query: 227 ------LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA 280
                 L+N  G+ L+PF+ ++ L+G++T+ALR+E+  +NA K+A +L  HP+V  V YA
Sbjct: 259 RCRVVPLRNM-GAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYA 317

Query: 281 GLPEHPGHEL 290
           GLP+HP HEL
Sbjct: 318 GLPDHPEHEL 327

Length = 425

>gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional

 Score =  193 bits (492), Expect = 6e-59
 Identities = 101/311 (32%), Positives = 157/311 (50%), Gaps = 37/311 (11%)

Query: 23  YGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
           +GA+  P++ + T+    A +           + Y R G PT  ALE+ + K++     +
Sbjct: 7   HGAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTV 66

Query: 75  CFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA 133
           CF +GMAA+AAV   LL  G+ +V+   L+G T+ L   +    GV V  V+  D+  VA
Sbjct: 67  CFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLR-GLGVEVTMVDATDVQNVA 125

Query: 134 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADI 193
           +AI P T++V+VE+  NP  Q+ D+  I  +    G L +VDN++ SP L RP ++GA +
Sbjct: 126 AAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASL 185

Query: 194 VMHSATKFIAGHSDVMAGVLAVKGE----RLA--KELYFLQNAEGSGLAPF------DCW 241
           V++S +K+IAGH + + G +   G             Y   + +  GL         D  
Sbjct: 186 VINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMG 245

Query: 242 ICLR---------GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL-- 290
             L          G +T+ALRV++   NA  +A+FL +HP+V +V Y GL  HP H    
Sbjct: 246 ATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARAT 305

Query: 291 ----HYSQVLS 297
               HY  +LS
Sbjct: 306 ELFRHYGGLLS 316

Length = 397

>gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  188 bits (478), Expect = 1e-56
 Identities = 115/311 (36%), Positives = 168/311 (54%), Gaps = 47/311 (15%)

Query: 22  PYGALSTPLYQTATF--------KQPSATEN-GPYDYTRSGNPTRDALESLLAKLDKADR 72
              A + P+YQT ++        KQ  A E+ GP  Y+R  NPT +ALE+ +A L+    
Sbjct: 28  DTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPI-YSRLTNPTVEALENRIASLEGGVH 86

Query: 73  ALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NTCDLD 130
           A+ F SG AA  AA+ +L G G+ IV    LYGGT+ L      + G+ V  V N  D +
Sbjct: 87  AVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPE 146

Query: 131 EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG 190
              +A+ P TK  + E+  NP+  + DI  +AE+AH +   L+VDN+I +  L RPLELG
Sbjct: 147 SWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELG 206

Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKG------ERLAKEL--YF---------LQNAE-- 231
           AD+V+ S TKF  G+   + GVL   G      ER  K +  YF         L+ A+  
Sbjct: 207 ADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLG 266

Query: 232 ----------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK 275
                           G+ L+PF+ W+  +G+ T++LR+E+  +NA K+AEFL +H +V 
Sbjct: 267 APAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVA 326

Query: 276 KVNYAGLPEHP 286
           KVN+AGL + P
Sbjct: 327 KVNFAGLKDSP 337

Length = 437

>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated

 Score =  176 bits (449), Expect = 3e-52
 Identities = 99/312 (31%), Positives = 167/312 (53%), Gaps = 43/312 (13%)

Query: 10  STLLMNFSNEFDPY---GALSTPLYQTATF------------------KQPSATENGPYD 48
            T ++N+   +DP    GA+  P++ T+TF                  K+P A E     
Sbjct: 19  ETQMLNYG--YDPELSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLV 76

Query: 49  YTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD 107
           Y+R  +P  + +E  LA  + A+ A  F+SGM+A+A      +  G+ I+    LYGGT+
Sbjct: 77  YSRFNHPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTE 136

Query: 108 RLLSRVTPKTGV----VVKRVNTCDLDEV---ASAIGPWTKLVWVESPTNPRQQICDI-- 158
            LL++     GV        ++   +      A+A G    L+ +E+P NP   + D+  
Sbjct: 137 TLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGR-VSLILIETPANPTNSLVDVAA 195

Query: 159 -RKIAEM---AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA 214
            R++A+       H  ++  DN+++ PV  +PLE GAD+ ++S TK++ GHSD++AG  A
Sbjct: 196 VRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAG--A 253

Query: 215 VKGER-LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR 273
           V G + L +++  L++A G+ L P  CW+  R ++T+ LR+E+   NA+ +AEFL  HP+
Sbjct: 254 VLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPK 313

Query: 274 VKKVNYAGLPEH 285
           V+K++Y  LP  
Sbjct: 314 VEKLHY--LPFL 323

Length = 427

>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional

 Score =  165 bits (419), Expect = 3e-48
 Identities = 96/299 (32%), Positives = 154/299 (51%), Gaps = 13/299 (4%)

Query: 1   MSVEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSA----TENGPYDYTRSGNP 55
               E+ G++T L +  N+  D +G ++ P+   +T   P A    T    Y Y   G P
Sbjct: 5   QLKTEKAGINTRLAHDGNDPGDYHGFVNPPVVHASTVLFPDAETMATRGQKYTYGTRGTP 64

Query: 56  TRDALESLLAKLDKADRALCFTSGMAALAAVT----HLLGTGEEIVAGDDLYGGTDRLLS 111
           T DAL   +  L+ +   +   SG   LAAVT      L  G+  +  D +Y  T     
Sbjct: 65  TTDALCKAIDALEGSAGTILVPSG---LAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCD 121

Query: 112 RVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGAL 171
            +  + GV V+  +      +A  + P TK+V  E+P +   ++ DI  IAE AH HGA+
Sbjct: 122 TMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAI 181

Query: 172 LLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE 231
           +++DN+  +P+  RPL+ G DI +H+ATK+ +GHSD++ G ++   E+   +L       
Sbjct: 182 VMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSAN-EKCWPQLLEAHGTL 240

Query: 232 GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL 290
           G    P D +  LRG++TM +R+E  + +A +IA +L   P V +V +  LP  PGHE+
Sbjct: 241 GLCAGPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEI 299

Length = 395

>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial

 Score =  160 bits (406), Expect = 1e-46
 Identities = 78/279 (27%), Positives = 143/279 (51%), Gaps = 6/279 (2%)

Query: 17  SNEFDPYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADR 72
                  G+++ PL + +T    S        G   Y R G  T  AL+  + +L+    
Sbjct: 8   RQPRFSQGSVNPPLQRASTVLFDSHAAQRRAKGELTYGRRGTLTHFALQDAMCELEGGAG 67

Query: 73  ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
              + SG+AA+  ++   +  G+ ++  D  Y  T      V  + GV +   +    ++
Sbjct: 68  CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGED 127

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
           +A+ I P TK++++E+P++   +I DI  IA+ A   G ++++DN+  + +L +PLE G 
Sbjct: 128 IATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGV 187

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 251
           DI + + TK++ GHSD+M G   V   R   +L       G  +   D +  LRG++T+ 
Sbjct: 188 DISIQAGTKYLVGHSDIMIGT-VVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLG 246

Query: 252 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL 290
           +R+++ Q+++  IA++L+  P V +V +  LP  PGHE 
Sbjct: 247 VRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEF 285

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377

>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase

 Score =  154 bits (391), Expect = 6e-44
 Identities = 99/315 (31%), Positives = 160/315 (50%), Gaps = 39/315 (12%)

Query: 13  LMNFSNEFDPYGALSTPLYQTATF--KQPSA----------TENGPYDYTRSGNPTRDAL 60
           L +  +EF  +G ++  +  +ATF   +P             +   Y Y+R  NPT   L
Sbjct: 22  LASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNL 81

Query: 61  ESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-G 118
              +A L+  + A C  SGM+A+++V   L  +G  +VA + LYGGT  LL+   P+   
Sbjct: 82  GRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCN 141

Query: 119 VVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
           +    V+  DL+ V  A+ P  TK+++ ES +NP   + DI ++A +AH  G  ++VDN+
Sbjct: 142 ITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNT 201

Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLA 236
             +P++  P  LGAD+V+HS +KFI+G +D++AG  AV G   L   +  L +     L 
Sbjct: 202 -FAPMVLSPARLGADVVVHSISKFISGGADIIAG--AVCGPAELVNSMMDLHHGALMLLG 258

Query: 237 P-------FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK----KVNYAGLPEH 285
           P       F+  +  R +  ++LR+++    A + A+      R+K    KV Y GL +H
Sbjct: 259 PTMNPKVAFE--LSER-LPHLSLRMKEHCRRAMEYAK------RMKELGLKVIYPGLEDH 309

Query: 286 PGHELHYSQVLSDNG 300
           P H L  S      G
Sbjct: 310 PQHALLKSMANKGYG 324

Length = 418

>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional

 Score =  143 bits (362), Expect = 5e-40
 Identities = 73/274 (26%), Positives = 133/274 (48%), Gaps = 9/274 (3%)

Query: 25  ALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCF 76
           +  TP+ + +T   P            +  + Y     PT  AL   LA+++    AL  
Sbjct: 27  SFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALLQ 86

Query: 77  TSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA 135
            SG+AA++ V   L+  G++++  D+ YG        +    G+ V+  +      +A  
Sbjct: 87  PSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADL 146

Query: 136 IGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVM 195
           I P T+L+W+E+P +   ++ D+  I   A A G +  +DN+  + +  +P E G DI +
Sbjct: 147 IQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISV 206

Query: 196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
            + TK+ +G SDV+ G        L  +L   +   G G++  DC + LRG+ ++ +R+ 
Sbjct: 207 QALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQVRLA 266

Query: 256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
               +A ++AE+L + P +  V +  LP+ PGH 
Sbjct: 267 AHDRSALEVAEWLKARPEIATVLHPALPDCPGHA 300

Length = 394

>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional

 Score =  138 bits (349), Expect = 4e-38
 Identities = 82/263 (31%), Positives = 138/263 (52%), Gaps = 12/263 (4%)

Query: 44  NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G PT  A ++ + +L+       + SG AA++ A+   L  G+ ++  D  
Sbjct: 50  NGEMFYGRRGTPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSC 109

Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
           Y  T  L  ++    G+     +    + +   I P TK++++ESP +   ++ D+  ++
Sbjct: 110 YEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLS 169

Query: 163 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222
            +AH H  ++++DN+  SP+ SRP E+G DI + +ATK+I GHSDVM G  A      A 
Sbjct: 170 RIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGT-AT-----AN 223

Query: 223 ELYFLQNAEGSGL-----APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKV 277
           E ++ Q  E S L     +P D ++ +RG++T+ +R+ + + NA K+A +LA+ P V  V
Sbjct: 224 EKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHV 283

Query: 278 NYAGLPEHPGHELHYSQVLSDNG 300
            +      PGHE         NG
Sbjct: 284 RHPAFETCPGHEFFKRDFSGSNG 306

Length = 394

>gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  133 bits (335), Expect = 8e-36
 Identities = 90/303 (29%), Positives = 147/303 (48%), Gaps = 41/303 (13%)

Query: 29  PLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM 80
           PLYQ+ T+K  ++         E   Y YTR GNPT  A E  LA+L+    A+   SG 
Sbjct: 27  PLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQ 86

Query: 81  AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGP 138
           AA+  AV ++  +G+ ++    +YGGT  L      K G+ V   N     DE+ +    
Sbjct: 87  AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND 146

Query: 139 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 198
            TKLV+ ES  NP   + + ++ ++ A       +VDN++ +P L +  E GA+I++HS 
Sbjct: 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHST 206

Query: 199 TKFIAGHSDVMAGVLAVKGE-------------------------------RLAKELYFL 227
           TK+I GH+  + G++   G                                 + K    L
Sbjct: 207 TKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQL 266

Query: 228 QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG 287
               G+ ++PF+ +I   G++T+ LR+E+  +NA  +A++LA H R++ VNY GL  +  
Sbjct: 267 LRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNEN 326

Query: 288 HEL 290
           + L
Sbjct: 327 YSL 329

Length = 432

>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional

 Score =  114 bits (288), Expect = 2e-29
 Identities = 75/251 (29%), Positives = 133/251 (52%), Gaps = 8/251 (3%)

Query: 44  NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G  T  +L+  + +L+       +  G AA+A A+   +  G+ ++     
Sbjct: 51  NGELFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTA 110

Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI- 161
           Y  T    S++  K GV     +     ++A  I P TK+V++ESP +   ++ D+  I 
Sbjct: 111 YEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIV 170

Query: 162 -AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
            A  +    A++++DN+  + VL + L+ G DI + + TK++ GHSD M G  AV   R 
Sbjct: 171 AAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGT-AVANARC 229

Query: 221 AKELYFLQNAEGSG-LAPFD-CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN 278
            ++L   +N+   G +   D  ++  RG++T+ +R+ + ++++ K+AE+LA HP V +VN
Sbjct: 230 WEQLR--ENSYLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVN 287

Query: 279 YAGLPEHPGHE 289
           +  LP   GHE
Sbjct: 288 HPALPGCKGHE 298

Length = 395

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 21/208 (10%)

Query: 30  LYQTATFKQPSATENGPYDYTRSGNPTR--DALESLLAKLDKADRA--LCFTSGMA-ALA 84
           L   A + +          +T +   T   +A    +A+   AD +  + FT G   AL 
Sbjct: 39  LDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALN 98

Query: 85  AVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASA 135
            V   LG     G+EIV  D  +         +  +TG  V+ +        DLD +   
Sbjct: 99  LVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKL 158

Query: 136 IGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL---ELGAD 192
           I P TKLV +   +N    +  +++IAE+AH HGAL+LVD +  +  L  P+   ELG D
Sbjct: 159 ITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHL--PIDVQELGCD 216

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERL 220
            +  S  K++ G + +  GVL V+ E L
Sbjct: 217 FLAFSGHKWLLGPTGI--GVLYVRKELL 242

Length = 405

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 43/175 (24%), Positives = 65/175 (37%), Gaps = 21/175 (12%)

Query: 57  RDALESLLAKL--DKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRV 113
            + LE  LA+L     D+A+   SG  A  A    LLG G+E++   + +G         
Sbjct: 2   LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSR---YWVA 58

Query: 114 TPKTGVVVKRVNTCD--------LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165
               G     V   D                 P   L+ +   T     +  +++I ++A
Sbjct: 59  AELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIA 118

Query: 166 HAHGALLLVDNS----IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK 216
             +G LLLVD +              E GAD+V  S  K + G      GV+ VK
Sbjct: 119 KEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGG---EGGGVVIVK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 13/192 (6%)

Query: 33  TATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKADRALCFTSGMAALA-----AV 86
           +A   + +A   G Y+ +R +     DA E++   L+     + F +   +L      A+
Sbjct: 38  SAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAI 97

Query: 87  THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK----RVNTCDLDE--VASAIGPWT 140
           +   G G+E++     +        +   + G  VK       T +L    +AS + P T
Sbjct: 98  SRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRT 157

Query: 141 KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSAT 199
           +LV V + +N    I D+  I E+ HA GAL++VD    +P  L      GAD +  SA 
Sbjct: 158 RLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAY 217

Query: 200 KFIAGHSDVMAG 211
           KF   H  ++ G
Sbjct: 218 KFFGPHMGILWG 229

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397

>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 48/241 (19%)

Query: 52  SGN-PTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRL 109
           SG     + LE  LA+    + AL F+SG AA    ++ L G G+ I++        D L
Sbjct: 42  SGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGDLIIS--------DSL 93

Query: 110 ----------LSRVTPKTGVVVKRVNTCDLDEV-ASAIGPWT-KLVWVESPTNPRQQICD 157
                     LS        + K  +  DL+++   A  P+  KL+  E   +    I  
Sbjct: 94  NHASIIDGIRLSGAKK---RIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP 150

Query: 158 IRKIAEMAHAHGALLLVDNS----IMSP----VLSRPLELGA-DIVMHSATKFIAGHSDV 208
           + ++ ++A  +GA+L VD +    +  P    V          DI+M +  K        
Sbjct: 151 LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFG----A 206

Query: 209 MAGVLAVKGERLAKELYFLQNAEG----SGLAPFD-CWI--CLRGVKTMALRVEKQQDNA 261
           + G   + G +   + Y    A G    + L P         L  ++    R E+ Q+N 
Sbjct: 207 VGG--YIAGSKELID-YLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENV 263

Query: 262 Q 262
           +
Sbjct: 264 R 264

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349

>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed

 Score = 56.3 bits (137), Expect = 5e-09
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 28/131 (21%)

Query: 59  ALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL-------- 109
           ALE  LA+   A+RAL F+SG  A LA +T L G G+ IV+        D+L        
Sbjct: 88  ALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVS--------DKLNHASLIDG 139

Query: 110 --LSRVTPKTGVVVKRVNTCDLDEVASAIGPWT---KLVWVESPTNPRQQICDIRKIAEM 164
             LSR        V+R    D+D + + +  W     L+  ES  +    +  + ++  +
Sbjct: 140 ARLSRAR------VRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVAL 193

Query: 165 AHAHGALLLVD 175
           A  HGA LLVD
Sbjct: 194 ARRHGAWLLVD 204

Length = 385

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 21/144 (14%)

Query: 76  FTSGM-----AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN----- 125
           FTSG          ++   L  G+EI+  +  +         +  +TG  V+ +      
Sbjct: 66  FTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNG 125

Query: 126 TCDLDEVASAIGPWTKLV---WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
             DLD +   + P TKLV    V + T        + +I ++AH +GAL++VD +    V
Sbjct: 126 LLDLDALEKLLTPRTKLVAITHVSNVTGTVN---PVEEIGKLAHEYGALVVVDAA--QAV 180

Query: 183 LSRPL---ELGADIVMHSATKFIA 203
             RP+    LG D +  S  K   
Sbjct: 181 GHRPIDVQALGVDFLAFSGHKLYG 204

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 36/144 (25%)

Query: 52  SGN-PTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL 109
           SG       LE  LA    A+ AL F+SG +A L  ++ LL  G+ I +        D L
Sbjct: 80  SGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFS--------DEL 131

Query: 110 ----------LSRVTPKTGVVVKRVNTCDLDEVASAIGPWT------KLVWVES--PTNP 151
                     LSR        V+R    DLD + + +          KL+  E     + 
Sbjct: 132 NHASIIDGIRLSRAE------VRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDG 185

Query: 152 RQQICDIRKIAEMAHAHGALLLVD 175
              I  + ++ E+A  +GALL VD
Sbjct: 186 D--IAPLPELVELAEKYGALLYVD 207

Length = 388

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 23/120 (19%)

Query: 116 KTGVVVKRV-----NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           +TG  +K V        DL+ +   +   TKLV V   +N    I  +++I E+AH  G 
Sbjct: 111 RTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGV 170

Query: 171 LLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIA--GHSDVMA---GVLAVKGERLAK 222
            +LVD +  +  +  P+   +LG D        F+A  GH  +     GVL  K E L +
Sbjct: 171 PVLVDGAQSAGHM--PVDVQDLGCD--------FLAFSGHKMLGPTGIGVLYGKEELLEE 220

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated

 Score = 50.1 bits (121), Expect = 6e-07
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPVLS 184
             DL+ + +A+   T  V V+ P N    I D+ +IAE+AHA GAL  +  + +   +L 
Sbjct: 191 VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSLGLLK 249

Query: 185 RPLELGADIV 194
            P E GADIV
Sbjct: 250 PPGEYGADIV 259

Length = 447

>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-----IMSPVL-SRPLELGA 191
           P  K   + +PT       ++RKI E AH  G  +LVD +        P+L S     GA
Sbjct: 153 PDAKAAVITNPT-YYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGA 211

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223
           DIV+ S  K +   +     ++ VKG+ +  +
Sbjct: 212 DIVVQSTHKTLPALT--QGSMIHVKGDLVNPD 241

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294

>gnl|CDD|223480 COG0403, GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 81  AALAAVTHLLGTGEEIVAGDDLYGGT-DRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
           A L A         + +   D++  T D L +R     G+ ++ V+  DLD++ SA    
Sbjct: 152 AMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGL-GIEIEVVDADDLDDLESADDGD 210

Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSA 198
              V V+ P        D+R + E AH+ GAL++V    ++  +L  P E GADIV+ SA
Sbjct: 211 VFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSA 270

Query: 199 TKF 201
            +F
Sbjct: 271 QRF 273

Length = 450

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 30/247 (12%)

Query: 53  GNPTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTD---- 107
           G+PT + LE  +A+L   + AL   SG MA   A+      G+E++ G+  +   D    
Sbjct: 30  GDPTVNRLEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVICGEPAHIYFDETGG 89

Query: 108 -RLLSRVTPKTGVVVKRVNTCDLDEVASAI-------GPWTKLVWVESPTNPRQQIC--- 156
              L    P   +        DL+++ +AI        P T L+ +E+  N         
Sbjct: 90  HAELGGAQPVP-LPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSL 148

Query: 157 -DIRKIAEMAHAHGALLLVD------NSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM 209
            ++R+I  +A  HG  L +D       ++   V+ + +   AD V  S +K +      +
Sbjct: 149 EELREIRAIAREHGIPLHLDGARLANAAVALGVIVKEITSYADSVSMSLSKGLGAP---V 205

Query: 210 AGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMALRVEKQQDNAQKIAEF 267
             VLA   + +A      +   G G+  A       LR ++    R+ +    A+++AE 
Sbjct: 206 GSVLAGSDDFIAYARRQ-RKYLGGGMRQAGVLAAAGLRALEEGVARLGRDHATARRLAEG 264

Query: 268 LASHPRV 274
           L     V
Sbjct: 265 LELLRGV 271

Length = 288

>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 51/250 (20%)

Query: 60  LESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL--------- 109
           LE  LA+    + AL F+SG +A +  ++ L+G G+ I++        D L         
Sbjct: 66  LEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILS--------DALNHASLIDGC 117

Query: 110 -LSRVTPKTGVVVKRVNTCDLDEVA----SAIGPWTKLVWVESPTNPRQQICDIRKIAEM 164
            LS         V+R    D++ +        G   KL+  +   +    I  + ++  +
Sbjct: 118 RLSGAR------VRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVAL 171

Query: 165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL---------AV 215
           A  +GA L+VD++  + VL    E G   + H   K      D+  G L          V
Sbjct: 172 AERYGAWLMVDDAHGTGVLG---EDGRGTLEHFGLK--PEPVDIQVGTLSKALGSYGAYV 226

Query: 216 KGERLAKELYFLQNAEG----SGLAPFDCWIC---LRGVKTMALRVEKQQDNAQKIAEFL 268
            G +   + Y +  A      + L P         L  ++    R EK      ++   L
Sbjct: 227 AGSQALID-YLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGL 285

Query: 269 ASHPRVKKVN 278
            +       +
Sbjct: 286 EALGFTLMPS 295

7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360

>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 14/111 (12%)

Query: 113 VTPKTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 167
           V  KTG V+K V        D++++   +   TKLV     +N    I  +  I   AHA
Sbjct: 142 VAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHA 201

Query: 168 HGALLLVDNSIMSPVLSRPLE-LGADIVMHSATK--------FIAGHSDVM 209
            GA +LVD     P +   ++ LGAD ++ S+ K        F+ G SD++
Sbjct: 202 VGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLL 252

Length = 424

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 28/142 (19%)

Query: 58  DALESLLAKL--------DKADRALCFTSGM-AALAAVTHLLG--TGEEIVAGDDLYGGT 106
             L   LAK            + A+ F SG  A + A+  LL    G+ I+     Y   
Sbjct: 44  PELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSY 103

Query: 107 DRLLSRVTPKTGVVVKRVN-------TCDLDEVASAIGPWT---KLVWVESPTNPRQQIC 156
            R+        G  V R           D D + +A+   T   K+V   SP NP   + 
Sbjct: 104 IRIFRL----AGGEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVA 159

Query: 157 ---DIRKIAEMAHAHGALLLVD 175
              ++ K+ ++A  H  LLLVD
Sbjct: 160 TLEELEKLLDLAKEHNILLLVD 181

Length = 357

>gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 15/177 (8%)

Query: 57  RDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVA--GDDLYGGTDRLLSRVT 114
              L  LL  L  A+ A    +  AA+    + L  G+E+V   G+ + GG  R+   + 
Sbjct: 70  LTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVEGGAFRV-PDII 128

Query: 115 PKTG---VVVKRVNTCDLDEVASAIGPWTKLVW-VESPTNPRQQICDIRKIAEMAHAHGA 170
              G   V V   N   L +   AI   T L+  V S       +    ++ E+AH  G 
Sbjct: 129 RLAGAKLVEVGTTNRTHLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGL 188

Query: 171 LLLVDNSIMSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222
            ++VD +  + V   P     L LGAD+V  S  K + G     AG++  K E + K
Sbjct: 189 PVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGG---PQAGIIVGKKELIEK 242

Length = 395

>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 46/150 (30%)

Query: 55  PTRDAL----ESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRL 109
             R+AL      L       +R    +SG+ AL  A   L+G G+E+VA           
Sbjct: 65  ELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVA----------- 113

Query: 110 LSRVTP----------KTGVVVKRVN--------TCDLDEVASAIGPWTKLVWVESPTNP 151
              VTP            G  V  V         T DLD + +AI P T+ +++ SP NP
Sbjct: 114 ---VTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNP 170

Query: 152 ------RQQICDIRKIAEMAHAHGALLLVD 175
                 R    D+R I      HG  ++ D
Sbjct: 171 TGWTASRD---DLRAILAHCRRHGLWIVAD 197

Length = 382

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 19/108 (17%)

Query: 81  AALAAVTHLLGTGEEIVAGDDLY----------GGTDRLLSRVTPKTGVVVKRVNTCDLD 130
           A  AAV  L+  G+E++  +  Y          G     +  V    G  +      DLD
Sbjct: 97  AIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFAL------DLD 150

Query: 131 EVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVD 175
            + +A+ P T+ + V SP NP   +    ++  IAE+A  H  L++ D
Sbjct: 151 ALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITD 198

Length = 387

>gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 12/73 (16%)

Query: 155 ICDIRKIAEMAHAHGALLLVDNSI--------MSPVLSRPLELGADIVMHSATKFIAGHS 206
             ++RKI E+ H +GA +L D +         M P  +  L  GAD V  S  K +A  S
Sbjct: 181 CYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESA--LNGGADFVTQSTHKLLAALS 238

Query: 207 DVMAGVLAVKGER 219
              A ++ VK  R
Sbjct: 239 --QASMIHVKDGR 249

Length = 557

>gnl|CDD|235292 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 21/80 (26%)

Query: 128 DLDEVASAIGPWTKLVWVESPTNP-------RQQICDIRKIAEMAHAHGALLLVD----N 176
           DL+ + +A+G  T  + +   TNP       R    +I +IAE+ H  G LL  D    N
Sbjct: 197 DLEALKAAVGEDTAALML---TNPNTLGLFER----NILEIAEIVHEAGGLLYYDGANLN 249

Query: 177 SIMSPVLSRPLELGADIVMH 196
           +I+     RP ++G D V+H
Sbjct: 250 AILGKA--RPGDMGFD-VVH 266

Length = 481

>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and beta-subunits

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 157 DIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSATKFIAGHS--DVMAGVL 213
            I++IA++AH+ GAL+ VD   ++   L  P E GADIV+ +  K    H      AG  
Sbjct: 177 LIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFF 236

Query: 214 AVKGE 218
           AVK E
Sbjct: 237 AVKKE 241

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. Length = 398

>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent acyltransferase, putative

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 4/140 (2%)

Query: 58  DALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           + LE  LAK  K + AL F SG      V   L    +IV  D+L   +     R+T  T
Sbjct: 81  EELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKAT 140

Query: 118 GVVVKRVNTCDLDEVA-SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176
             + K  +  DLD V         KL+  +   +    +  + +I E+A  +GA+  VD+
Sbjct: 141 KKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDD 200

Query: 177 SIMSPVLSRPLELGADIVMH 196
           +  S V+    E G   V H
Sbjct: 201 AHGSGVMG---EAGRGTVHH 217

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. Length = 385

>gnl|CDD|235432 PRK05367, PRK05367, glycine dehydrogenase; Provisional

 Score = 40.5 bits (96), Expect = 8e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF 201
           ++ D   +   AHA GAL+ V   +++  L   P E+GADI + SA +F
Sbjct: 220 EVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRF 268

Length = 954

>gnl|CDD|216983 pfam02347, GDC-P, Glycine cleavage system P-protein

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF--IAGHSDVMAG 211
           I D +++ E+AH HG+L++V   +++  + + P E GADIV+ SA +F    G+    AG
Sbjct: 212 IEDYKELIEIAHQHGSLVVVAADLLALTILKPPGEFGADIVVGSAQRFGVPMGYGGPHAG 271

Query: 212 VLAVKGE 218
             AVK E
Sbjct: 272 FFAVKEE 278

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalyzed by this protein is:- Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Length = 429

>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 27/140 (19%)

Query: 55  PTRDALESLLAKLD----KADRALCFTSG--MAALAAVTHLLGTGEEIVAGDDLYGGTDR 108
             R+A+ +  A+L      AD  +  T+G   A  AA+  L+  G+E++  D  Y   D 
Sbjct: 71  ALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSY---DS 127

Query: 109 LLSRVTPKTGVVVK--------RVNTCDLDEVASAIGPWTKLVWVESPTNP-----RQQI 155
               +    G  V+        RV   D    A+AI P T+L+ + +P NP         
Sbjct: 128 YAPAIELAGGRAVRVALQPPDFRV---DWQRFAAAISPRTRLIILNTPHNPSGTVWSAA- 183

Query: 156 CDIRKIAEMAHAHGALLLVD 175
            D+R + ++       +L D
Sbjct: 184 -DMRALWQLIAGTDIYVLSD 202

Length = 386

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 22/125 (17%)

Query: 66  KLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGD---DLYGGTDRLLSRVTPKTGVVV 121
            +D  +  +       AL  A   LL  G+E++  D     Y    +L        G   
Sbjct: 85  DVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLA-------GGKP 137

Query: 122 KRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGA 170
             V           DL+++ +AI P TK + + SP NP   +     ++ I E+A  H  
Sbjct: 138 VPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDI 197

Query: 171 LLLVD 175
           +++ D
Sbjct: 198 IIISD 202

Length = 393

>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 58/235 (24%), Positives = 92/235 (39%), Gaps = 29/235 (12%)

Query: 78  SGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLD 130
           S  A    +T LL  G+E+V  D  Y      LS +   TG  V+            DLD
Sbjct: 78  SSEAIYLVLTALLRPGDEVVVVDPAY----HSLSHLAVATGCEVRPWPLLAVRGFRPDLD 133

Query: 131 EVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM-----SPV 182
            + + + P T+ V V  P NP         + ++ E A   GA+LL DN+       +P 
Sbjct: 134 ALRALLTPRTRAVVVNFPHNPTGASVTPRELDELLERAARSGAVLLWDNAFADLVHDAPP 193

Query: 183 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242
           L  P  L   ++         G   +  G   V    L  EL  L++     L+P    +
Sbjct: 194 LPDPSALYDRVISFGTLSKAFGLPGLRVG-WCVGPADLLAELVRLRDYTTLSLSPLVELL 252

Query: 243 CLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKV-----NYAGLPEHPGH 288
               V+     +  R+ + + N +++ ++ A+HP V +        A  P  PGH
Sbjct: 253 AEVAVEHADALIGPRLAEARANRRRLLDWAAAHPDVVRCTPPEGGVAAFPRFPGH 307

Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359

>gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 7/44 (15%)

Query: 157 DIRKIAEMAHAHGALLLVD----NSIMSPVLSRPLELGADIVMH 196
           DIR+I E+ H  G  +  D    N+I+   L+RP ++G D V+H
Sbjct: 222 DIREICEIVHEAGGQVYYDGANLNAIVG--LARPGDMGFD-VVH 262

Length = 496

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 30/172 (17%)

Query: 128 DLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVDNS---- 177
           DL+ + +A  P TKL+++ +P NP       +++    ++AE+A  HG L++ D +    
Sbjct: 121 DLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEEL---EELAELAKKHGILIISDEAYAEL 177

Query: 178 IMSPVLSRPLELGAD----IVMHSATKFIAGHSDVMA----GVLAVKGERLAKELYFLQN 229
           +        L L       IV+ S +K        +     G L    E L + L  L  
Sbjct: 178 VYDGEPPPALALLDAYERVIVLRSFSKTFG-----LPGLRIGYLIAPPEELLERLKKLLP 232

Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQD----NAQKIAEFLASHPRVKKV 277
              SG +          +      +E+ ++        + E L     +  V
Sbjct: 233 YTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVV 284

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 37/149 (24%)

Query: 78  SGMAAL-AAVTHLLGTGEEIVAGD------------DLYGGTDRLLSRVTPKTGVVVKRV 124
           SG  A+ AAV  L+  G++++               + YG    +L  V     V     
Sbjct: 64  SGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVL-EVEWGEAV----- 117

Query: 125 NTCDLDEVASAI--GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM 179
              D +EV  A+   P  K V V   E+ T        +++IA+ A  HGALL+VD ++ 
Sbjct: 118 ---DPEEVEEALDKDPDIKAVAVVHNETSTGVLN---PLKEIAKAAKEHGALLIVD-AVS 170

Query: 180 S----PVLSRPLELGADIVMHSATKFIAG 204
           S    P+  +  E G D+ +  + K +  
Sbjct: 171 SLGGEPL--KVDEWGIDVAITGSQKALGA 197

Length = 383

>gnl|CDD|162358 TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 125 NTCDLDEVASAIGPWT-KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183
           N C  +++ +AI   T  +++++S    ++ +  +   A++A  H   L+VD +     L
Sbjct: 134 NECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEED-L 192

Query: 184 SRPLELGADIVMHSATKFIAG 204
            +   LGAD+V++S  K I G
Sbjct: 193 QKYYRLGADLVIYSGAKAIEG 213

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation [Unknown function, Enzymes of unknown specificity]. Length = 363

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
PRK08861	388	cystathionine gamma-synthase; Provisional	100.0
PLN02509	464	cystathionine beta-lyase	100.0
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	100.0
PRK08114	395	cystathionine beta-lyase; Provisional	100.0
PRK09028	394	cystathionine beta-lyase; Provisional	100.0
PRK05967	395	cystathionine beta-lyase; Provisional	100.0
PRK08045	386	cystathionine gamma-synthase; Provisional	100.0
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	100.0
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	100.0
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	100.0
PRK07671	377	cystathionine beta-lyase; Provisional	100.0
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	100.0
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	100.0
PRK08249	398	cystathionine gamma-synthase; Provisional	100.0
PRK08776	405	cystathionine gamma-synthase; Provisional	100.0
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	100.0
PRK07811	388	cystathionine gamma-synthase; Provisional	100.0
PRK08574	385	cystathionine gamma-synthase; Provisional	100.0
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	100.0
PRK08064	390	cystathionine beta-lyase; Provisional	100.0
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	100.0
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	100.0
PRK07050	394	cystathionine beta-lyase; Provisional	100.0
PRK06460	376	hypothetical protein; Provisional	100.0
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07503	403	methionine gamma-lyase; Provisional	100.0
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	100.0
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	100.0
PRK05939	397	hypothetical protein; Provisional	100.0
PRK07582	366	cystathionine gamma-lyase; Validated	100.0
PRK06234	400	methionine gamma-lyase; Provisional	100.0
PRK07049	427	methionine gamma-lyase; Validated	100.0
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	100.0
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	100.0
PRK06767	386	methionine gamma-lyase; Provisional	100.0
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08247	366	cystathionine gamma-synthase; Reviewed	100.0
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	100.0
PRK07269	364	cystathionine gamma-synthase; Reviewed	100.0
PLN02242	418	methionine gamma-lyase	100.0
PRK06434	384	cystathionine gamma-lyase; Validated	100.0
PRK05968	389	hypothetical protein; Provisional	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.97
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.96
PRK06207	405	aspartate aminotransferase; Provisional	99.95
PRK07179	407	hypothetical protein; Provisional	99.95
PLN02187	462	rooty/superroot1	99.95
PRK07681	399	aspartate aminotransferase; Provisional	99.95
PRK05957	389	aspartate aminotransferase; Provisional	99.95
PRK06290	410	aspartate aminotransferase; Provisional	99.95
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.95
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.94
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.94
PRK07324	373	transaminase; Validated	99.94
PLN00175	413	aminotransferase family protein; Provisional	99.94
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.94
PLN02368	407	alanine transaminase	99.94
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.94
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.94
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.94
PRK12414	384	putative aminotransferase; Provisional	99.94
PLN02483	489	serine palmitoyltransferase	99.94
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.94
PRK05942	394	aspartate aminotransferase; Provisional	99.94
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.94
PRK06348	384	aspartate aminotransferase; Provisional	99.94
PRK08068	389	transaminase; Reviewed	99.94
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.94
PLN02656	409	tyrosine transaminase	99.93
PRK06108	382	aspartate aminotransferase; Provisional	99.93
PRK08960	387	hypothetical protein; Provisional	99.93
PRK08361	391	aspartate aminotransferase; Provisional	99.93
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.93
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.93
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.93
PRK06855	433	aminotransferase; Validated	99.93
PRK08912	387	hypothetical protein; Provisional	99.93
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.93
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.93
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.93
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.93
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.93
PRK07682	378	hypothetical protein; Validated	99.93
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.93
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.93
PRK05764	393	aspartate aminotransferase; Provisional	99.93
PTZ00377	481	alanine aminotransferase; Provisional	99.93
PTZ00433	412	tyrosine aminotransferase; Provisional	99.93
PRK09148	405	aminotransferase; Validated	99.93
PLN02955	476	8-amino-7-oxononanoate synthase	99.93
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.93
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.93
PRK13392	410	5-aminolevulinate synthase; Provisional	99.93
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.92
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.92
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.92
PRK07777	387	aminotransferase; Validated	99.92
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.92
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.92
PRK09082	386	methionine aminotransferase; Validated	99.92
PRK06107	402	aspartate aminotransferase; Provisional	99.92
PRK07550	386	hypothetical protein; Provisional	99.92
PRK13393	406	5-aminolevulinate synthase; Provisional	99.92
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.92
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.92
PRK09064	407	5-aminolevulinate synthase; Validated	99.92
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.92
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.92
PRK08636	403	aspartate aminotransferase; Provisional	99.92
PRK07337	388	aminotransferase; Validated	99.92
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.92
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.92
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.92
PLN02822	481	serine palmitoyltransferase	99.92
PRK05839	374	hypothetical protein; Provisional	99.92
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.92
PLN02231	534	alanine transaminase	99.92
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.92
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.92
PRK07683	387	aminotransferase A; Validated	99.92
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.92
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.92
PRK08175	395	aminotransferase; Validated	99.92
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.92
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.92
PRK09265	404	aminotransferase AlaT; Validated	99.91
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.91
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.91
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.91
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.91
PTZ00376	404	aspartate aminotransferase; Provisional	99.91
PRK07568	397	aspartate aminotransferase; Provisional	99.91
PRK08363	398	alanine aminotransferase; Validated	99.91
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.91
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.91
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.91
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.91
PRK06225	380	aspartate aminotransferase; Provisional	99.91
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.91
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.91
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.91
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.91
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.91
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.91
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.91
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.91
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.91
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.91
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.91
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.9
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.9
PRK09105	370	putative aminotransferase; Provisional	99.9
PRK06836	394	aspartate aminotransferase; Provisional	99.9
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.9
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.9
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.9
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.9
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.9
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.9
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.9
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.9
PRK03321	352	putative aminotransferase; Provisional	99.9
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.89
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.89
PLN02397	423	aspartate transaminase	99.89
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.89
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.89
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.89
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.89
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.89
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.89
PRK08354	311	putative aminotransferase; Provisional	99.89
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.89
PRK04311	464	selenocysteine synthase; Provisional	99.89
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.89
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.89
PLN02409	401	serine--glyoxylate aminotransaminase	99.89
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.89
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.88
PLN02651	364	cysteine desulfurase	99.88
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.88
PRK02948	381	cysteine desulfurase; Provisional	99.88
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.88
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.88
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.87
PLN02672	1082	methionine S-methyltransferase	99.87
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.87
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.87
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.87
PRK09275	527	aspartate aminotransferase; Provisional	99.87
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.87
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.87
PLN02721	353	threonine aldolase	99.87
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.87
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.87
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.87
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.87
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.87
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.87
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.87
PRK14012	404	cysteine desulfurase; Provisional	99.86
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.86
PRK07908	349	hypothetical protein; Provisional	99.86
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.86
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.86
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.86
PRK08637	388	hypothetical protein; Provisional	99.86
PRK07505	402	hypothetical protein; Provisional	99.86
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.86
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.86
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.86
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.86
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.85
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.85
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.85
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.85
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.85
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.85
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.84
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.84
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.84
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.84
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.84
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.84
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.84
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.83
PRK02627	396	acetylornithine aminotransferase; Provisional	99.83
PRK02769	380	histidine decarboxylase; Provisional	99.83
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.83
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.82
PRK10534	333	L-threonine aldolase; Provisional	99.82
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.82
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.81
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.81
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.81
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.8
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.8
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.8
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.79
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.79
PLN03032	374	serine decarboxylase; Provisional	99.79
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.78
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.77
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.77
PLN02271	586	serine hydroxymethyltransferase	99.76
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.76
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.75
PRK15029	755	arginine decarboxylase; Provisional	99.75
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.75
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.74
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.74
PLN02624	474	ornithine-delta-aminotransferase	99.74
PLN00144	382	acetylornithine transaminase	99.73
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.73
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.73
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.72
PRK04260	375	acetylornithine aminotransferase; Provisional	99.72
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.72
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.72
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.72
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.71
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.71
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.7
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.7
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.7
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.7
PRK13578	720	ornithine decarboxylase; Provisional	99.69
PRK13237	460	tyrosine phenol-lyase; Provisional	99.69
PLN02724	805	Molybdenum cofactor sulfurase	99.69
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.69
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.68
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.68
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.68
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.67
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.67
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.67
PLN02263	470	serine decarboxylase	99.67
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.66
PRK03080	378	phosphoserine aminotransferase; Provisional	99.66
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.66
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.66
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.65
PLN02880	490	tyrosine decarboxylase	99.65
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.65
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.65
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.65
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.64
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.64
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.64
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.63
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.63
PLN02590	539	probable tyrosine decarboxylase	99.63
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.63
PRK07046	453	aminotransferase; Validated	99.62
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.62
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.61
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.61
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.61
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.6
PRK06541	460	hypothetical protein; Provisional	99.6
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.6
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.6
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.59
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.59
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.59
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.59
PRK05367	954	glycine dehydrogenase; Provisional	99.58
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.58
PRK15400	714	lysine decarboxylase CadA; Provisional	99.58
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.58
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.58
PRK12403	460	putative aminotransferase; Provisional	99.58
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.58
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.58
COG4100	416	Cystathionine beta-lyase family protein involved i	99.57
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.57
PRK06105	460	aminotransferase; Provisional	99.56
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.56
PRK07678	451	aminotransferase; Validated	99.56
PRK05965	459	hypothetical protein; Provisional	99.56
PRK06062	451	hypothetical protein; Provisional	99.56
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.56
PRK07482	461	hypothetical protein; Provisional	99.56
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.56
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.56
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.55
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.55
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.55
PRK05367	954	glycine dehydrogenase; Provisional	99.54
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.54
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.54
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.54
PRK12566	954	glycine dehydrogenase; Provisional	99.53
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.53
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.53
PRK07481	449	hypothetical protein; Provisional	99.52
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.52
PRK07483	443	hypothetical protein; Provisional	99.52
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.51
PRK06917	447	hypothetical protein; Provisional	99.5
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.5
PRK06149	972	hypothetical protein; Provisional	99.5
PRK07480	456	putative aminotransferase; Validated	99.49
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.49
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.49
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.48
PRK07036	466	hypothetical protein; Provisional	99.48
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.48
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.47
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.46
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.44
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.43
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.43
PRK06148	1013	hypothetical protein; Provisional	99.43
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.42
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.41
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.4
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.39
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.39
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.38
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.38
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.38
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.37
PRK08297	443	L-lysine aminotransferase; Provisional	99.32
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.31
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.31
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.29
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.28
PRK12566	954	glycine dehydrogenase; Provisional	99.26
PLN02452	365	phosphoserine transaminase	99.25
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.18
PRK12462	364	phosphoserine aminotransferase; Provisional	99.13
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	99.02
KOG0629	510	consensus Glutamate decarboxylase and related prot	99.01
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	98.96
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.85
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.82
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.75
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.72
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	98.65
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	98.46
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	98.42
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.35
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	98.08
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	97.95
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	97.65
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	97.59
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	97.12
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	96.18
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	88.57
PLN02672	1082	methionine S-methyltransferase	85.04
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	82.06
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	81.28
PF00265	176	TK: Thymidine kinase; InterPro: IPR001267 Thymidin	80.66
PF02310	121	B12-binding: B12 binding domain; InterPro: IPR0061	80.37
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	80.19

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=2e-45  Score=324.37  Aligned_cols=297  Identities=38%  Similarity=0.606  Sum_probs=266.5

Q ss_pred             CCCCCccceeeecCCC-CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHH
Q 022194            4 EEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (301)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~a   82 (301)
                      |.|..++|..++.+.. .+..|...+|++.+.+|..+.......|.|+++++|..++|++.++++.|.+.+++++||++|
T Consensus         1 ~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~Y~R~~npt~~~Le~~lA~leg~e~ivvt~gg~~A   80 (388)
T PRK08861          1 MSTRKPATIAVRTGIESDSQYHAVVPPIYLSTNYGFPAFGEVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSA   80 (388)
T ss_pred             CCCCCcccceeECCCCCCCCCCCccCCcccCcceEeCCcCccCCccccCCCCchHHHHHHHHHHHhCCCeEEEECCHHHH
Confidence            4566677888887622 334689999999999997766434456889999999999999999999999989999999999


Q ss_pred             HH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHH
Q 022194           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (301)
Q Consensus        83 i~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l  161 (301)
                      +. ++..++++||+|++++|.|++....+.......|+++..++..|++++++++++++++|++++|+||||.+.|+++|
T Consensus        81 i~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I  160 (388)
T PRK08861         81 LNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAEL  160 (388)
T ss_pred             HHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHH
Confidence            96 66678999999999999999877666555667789999999889999999999899999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHH
Q 022194          162 AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  241 (301)
Q Consensus       162 ~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (301)
                      .++|+++|+++|+|++|..+....+...|+|+++.|++|+++|+.++++|+++++++.+.++++......|..++|..++
T Consensus       161 ~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~  240 (388)
T PRK08861        161 CQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSY  240 (388)
T ss_pred             HHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHH
Confidence            99999999999999999998888888899999999999999999888899999877778887888888889999999999


Q ss_pred             HHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      .++++++.+..|.+++.+++..+.++|+.+|.|..|+||+++++|+|++++++++++||
T Consensus       241 l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg  299 (388)
T PRK08861        241 MTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGS  299 (388)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999987776

>PLN02509 cystathionine beta-lyase

Probab=100.00  E-value=1.3e-44  Score=324.06  Aligned_cols=298  Identities=83%  Similarity=1.272  Sum_probs=268.0

Q ss_pred             CCCCCCccceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHH
Q 022194            3 VEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~a   82 (301)
                      +.+++..+|..++.+...++.|...+|++.+.+|..+...+...+.|++.|+|.+++++++++++.+.+.++++++|++|
T Consensus        81 ~~~~~~~~t~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~Y~r~gnpt~~aLE~~lA~leg~e~ai~~~SG~aA  160 (464)
T PLN02509         81 IKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAA  160 (464)
T ss_pred             cccCCCcchHheeCCCCCCCCCCccCCccccceecCccccccCCCccCCCCCHHHHHHHHHHHHHhCCCEEEEeCcHHHH
Confidence            34466777888887733355789999999999998766555567889999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHH
Q 022194           83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (301)
Q Consensus        83 i~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~  162 (301)
                      +.++..++++||+|+++++.|+++...+...+...|++++.++..|++++++++++++++|++++|+||+|.+.|+++|+
T Consensus       161 i~~il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~  240 (464)
T PLN02509        161 LSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIA  240 (464)
T ss_pred             HHHHHHHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHH
Confidence            88777789999999999999999877776667788999999998899999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHH
Q 022194          163 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (301)
Q Consensus       163 ~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (301)
                      ++|+++|+++|+|++|+.+....+...++|+++.|++|+++|++++.+|+++.+++.+.+.++..+...+..+++..++.
T Consensus       241 ~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l  320 (464)
T PLN02509        241 EMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWL  320 (464)
T ss_pred             HHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence            99999999999999999888888888899999999999999988888999998777777766666666777889999999


Q ss_pred             HHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       243 ~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      .+++++.+..|+++..++++++.++|+++|.|+.|.||||+++|+|.+++++++++||
T Consensus       321 ~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg  378 (464)
T PLN02509        321 CLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS  378 (464)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCce
Confidence            9999999999999999999999999999999999999999999999999999988876

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-44  Score=311.25  Aligned_cols=294  Identities=51%  Similarity=0.825  Sum_probs=271.9

Q ss_pred             CCccceeeecCCCC-CCCCccccCeeecceeecCCCCC--------CCCccccCCCCchHHHHHHHHHhhcCCCceEEec
Q 022194            7 PGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (301)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~g~~~~p~~~~~~~~~~~~~~--------~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~   77 (301)
                      ..+.|..++.+... +..|...+|++.+.+|..+...+        ...+.|+|.++|.++.+++.++++-|.+.++.++
T Consensus         6 ~~~~T~~v~~g~~~~~~~gav~~PI~~tStf~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~~~afs   85 (396)
T COG0626           6 LSLTTRLVHAGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALEEALAELEGGEDAFAFS   85 (396)
T ss_pred             cccceeeEEcccccccCCCcccCCeeeeeeecccChhhhhhhccccccCcccccCCCccHHHHHHHHHHhhCCCcEEEec
Confidence            45668889988545 46999999999999988766432        4678999999999999999999999999999999


Q ss_pred             chHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC-CCceEEEEeCCCCCcccc
Q 022194           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        78 sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~-~~~~~v~i~~~~np~G~~  155 (301)
                      ||++||. +++.++++||+|++++..|++..+.+..+.++.|+++.+++..+.+.+++++. +++++|++++|.||+..+
T Consensus        86 SGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v  165 (396)
T COG0626          86 SGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEV  165 (396)
T ss_pred             CcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCccccc
Confidence            9999996 68899999999999999999999999999999999999999988888888887 599999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh-hcCCC
Q 022194          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGSG  234 (301)
Q Consensus       156 ~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~  234 (301)
                      .|+++|+++||++|+++++|++++.+.++.|++.|+||++.|.+|+++|...+++|.++.+++.+.+.+..... ..|..
T Consensus       166 ~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~  245 (396)
T COG0626         166 PDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAV  245 (396)
T ss_pred             ccHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999888888888887755665 58999


Q ss_pred             CCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ++|..+|.++++++.+..|.+++.+|+..+.++|+++|.|+.|+||+++++|+|.+++++.++.||
T Consensus       246 l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg  311 (396)
T COG0626         246 LSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGG  311 (396)
T ss_pred             CCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCce
Confidence            999999999999999999999999999999999999999999999999999999999999988776

>PRK08114 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=8.5e-44  Score=312.66  Aligned_cols=294  Identities=26%  Similarity=0.434  Sum_probs=261.7

Q ss_pred             CCCccceeeecCCCCC-CCCccccCeeecceeecCCCC--------C-CCCccccCCCCchHHHHHHHHHhhcCCCceEE
Q 022194            6 EPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (301)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~--------~-~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~   75 (301)
                      +...+|..++.+...+ +.|...+|++.+.+|..+...        . ...|.|+|.|+|+++.|++.++++.|.+.+++
T Consensus         3 ~~~~~t~~~~~~~~~~~~~~~v~~pi~~sstf~f~~~~~~~~~~~~~~~~~~~YsR~~nPt~~~le~~la~LEg~~~a~~   82 (395)
T PRK08114          3 DKKLDTQLVNAGRSKKYTQGSVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCAL   82 (395)
T ss_pred             CCCcchheEeCCCCCCCCCCCccCCeeCCCceecCCHHHHHHhhccCcCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Confidence            3445677777663233 358999999999988654421        1 13478999999999999999999999999999


Q ss_pred             ecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccc
Q 022194           76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (301)
Q Consensus        76 ~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~  154 (301)
                      ++||++|+. ++..++++||+|++++..|.+....+...+++.|+++.+++..|.+.+++++++++++|++++|.||+|.
T Consensus        83 ~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~  162 (395)
T PRK08114         83 YPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITME  162 (395)
T ss_pred             EhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCE
Confidence            999999996 6778899999999999999999888877788899999999998999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHcC--CEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcC
Q 022194          155 ICDIRKIAEMAHAHG--ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  232 (301)
Q Consensus       155 ~~~l~~l~~l~~~~~--~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~  232 (301)
                      +.|+++|+++||+++  +++++|++++.+...++++.|+|+++.|.+|+++|++++.+|+++.++ .+.+.++......|
T Consensus       163 v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~-~~~~~l~~~~~~~G  241 (395)
T PRK08114        163 VHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANA-RCWEQLRENSYLMG  241 (395)
T ss_pred             eecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCH-HHHHHHHHHHHhcc
Confidence            999999999999984  999999999999999999999999999999999999989899887664 45565666677788


Q ss_pred             CCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       233 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ..+++..+|.++++++.+..|.+++.+++..+.++|+++|.|..|+||+++++|+|++++++++++||
T Consensus       242 ~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg  309 (395)
T PRK08114        242 QMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSG  309 (395)
T ss_pred             CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999987776

>PRK09028 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=2.6e-43  Score=310.57  Aligned_cols=291  Identities=28%  Similarity=0.499  Sum_probs=256.8

Q ss_pred             ccceeeecCCCCC-CCCccccCeeecceeecCCCC--------C-CCCccccCCCCchHHHHHHHHHhhcCCCceEEecc
Q 022194            9 VSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (301)
Q Consensus         9 ~~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~--------~-~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~s   78 (301)
                      ++|..++.+-..+ +.|...+|++.+.+|..+...        . ...+.|++.++|...+|++.++++.+.+++++++|
T Consensus         5 ~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~~~s   84 (394)
T PRK09028          5 KATKIVSAGRDKKWTKGVINPPVFRASTVVFDTVAEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTALYPS   84 (394)
T ss_pred             ccceeEEcCCCCCCCCCCccCCeeCCCCcccCCHHHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEEECC
Confidence            4566777662233 348999999999998654321        1 13477999999999999999999998888999999


Q ss_pred             hHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        79 G~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                      |++|+. ++.+++++||+|+++++.|.++...+...++..|+++..++..+.+.+++++++++++|++++|+||+|.+.|
T Consensus        85 G~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~lespsNPtg~v~d  164 (394)
T PRK09028         85 GAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQD  164 (394)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCcHHH
Confidence            999986 6777899999999999999988876666677899999999888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCH
Q 022194          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  237 (301)
Q Consensus       158 l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (301)
                      +++|+++||++|+++++|++|+.+....+++.|+|+++.|.+|+++|++++++|+++.+ +.+.+.+.......|..+++
T Consensus       165 l~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~-~~~~~~l~~~~~~~G~~~~p  243 (394)
T PRK09028        165 VPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATAN-EKHWDQLREHSYLMGQCTSP  243 (394)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECC-HHHHHHHHHHHHhcCCCCCH
Confidence            99999999999999999999999988889999999999999999999999999987654 45556666666677899999


Q ss_pred             HhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          238 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ..++.++++++.+..|.+++.+++..+.++|+++|.|..|.|||++++|+|++++++.+++||
T Consensus       244 ~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg  306 (394)
T PRK09028        244 DDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNG  306 (394)
T ss_pred             HHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCc
Confidence            999999999999999999999999999999999999999999999999999999999988776

>PRK05967 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.8e-43  Score=310.93  Aligned_cols=291  Identities=31%  Similarity=0.493  Sum_probs=260.3

Q ss_pred             ccceeeecCCC-CCCCCccccCeeecceeecCCCC----CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHH
Q 022194            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL   83 (301)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~----~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai   83 (301)
                      .+|..++.+.. .++.|...+|++.+.+|..+...    ....|.|++.|+|.++.+++.++.+.+.+..++++||++|+
T Consensus        13 ~~t~~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~y~YsR~gnPt~~~Le~~la~le~~~~~v~~sSG~aAi   92 (395)
T PRK05967         13 INTRLAHDGNDPGDYHGFVNPPVVHASTVLFPDAETMATRGQKYTYGTRGTPTTDALCKAIDALEGSAGTILVPSGLAAV   92 (395)
T ss_pred             cccceeeCCCCCCCCCCCccCCccCCcceecCChHHhhcccCCCccCCCCChHHHHHHHHHHHHhCCCCEEEECcHHHHH
Confidence            45667776522 34579999999999999765532    23468899999999999999999999888899999999998


Q ss_pred             H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHH
Q 022194           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (301)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~  162 (301)
                      . ++.+++++||+|+++++.|+++...+...++..|+++.+++..+.+.+++++++++++|++++|+||++.+.|+++|+
T Consensus        93 ~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~  172 (395)
T PRK05967         93 TVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIA  172 (395)
T ss_pred             HHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHH
Confidence            6 667899999999999999999987776788999999999998888889999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHH
Q 022194          163 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (301)
Q Consensus       163 ~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (301)
                      ++||++|+++++|++++.+....+++.|+|+++.|.+|+++|.+++++|+++.++ .+.+++.......|..+++..++.
T Consensus       173 ~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~-~~~~~l~~~~~~~G~~~~p~da~l  251 (395)
T PRK05967        173 EAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANE-KCWPQLLEAHGTLGLCAGPDDTYQ  251 (395)
T ss_pred             HHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCH-HHHHHHHHHHHHcCCCCCHHHHHH
Confidence            9999999999999999999989999999999999999999999999999887664 455656666667789999999999


Q ss_pred             HHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       243 ~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ++++++.+..|.+++.+++..+.++|+++|.|..|+||+++++|+|++++++.+++||
T Consensus       252 ~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg  309 (395)
T PRK05967        252 ILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASG  309 (395)
T ss_pred             HHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCce
Confidence            9999999999999999999999999999999999999999999999999999987776

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=5.1e-43  Score=309.95  Aligned_cols=293  Identities=37%  Similarity=0.573  Sum_probs=260.4

Q ss_pred             CccceeeecCCC-CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-H
Q 022194            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (301)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~   85 (301)
                      .++|..++.+.. .+..|...+|++.+.+|..+...+...+.|+++++|.+++++++++++.|.+++++++||++|+. +
T Consensus         4 ~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~   83 (386)
T PRK08045          4 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLV   83 (386)
T ss_pred             CcccceeEcCCCCCCCCCCccCCccCCcceecCCccccCCceeeCCCCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHH
Confidence            455667776522 33469999999999999876654445688999999999999999999999888889999999986 5


Q ss_pred             HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 022194           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (301)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~  165 (301)
                      +..++++||+|++++|.|++....+.......++++..++..|.+++++++++++++|++++|+||||.+.|+++|.++|
T Consensus        84 l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia  163 (386)
T PRK08045         84 TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLA  163 (386)
T ss_pred             HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHH
Confidence            66789999999999999998776666666667778888887789999999988999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHc
Q 022194          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (301)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (301)
                      +++|+++|+|++|..+....+...++|+++.|++|+++|++++++|+++.+++.+.+.+.......+..+++..++++++
T Consensus       164 ~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~r  243 (386)
T PRK08045        164 REAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR  243 (386)
T ss_pred             HHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            99999999999999888778888899999999999999999999999988777777777777777888899999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++.+..|++++.+++..+.++|+++|.|..|+||+++++|+|++++++++++||
T Consensus       244 gl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~  298 (386)
T PRK08045        244 GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGA  298 (386)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCc
Confidence            9999999999999999999999999999999999999999999999999988777

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=6.8e-44  Score=312.74  Aligned_cols=279  Identities=49%  Similarity=0.814  Sum_probs=246.5

Q ss_pred             CCCccccCeeecceeecC-------CCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHH-HHHHhccCCC
Q 022194           22 PYGALSTPLYQTATFKQP-------SATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTG   93 (301)
Q Consensus        22 ~~g~~~~p~~~~~~~~~~-------~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai-~~~~~~~~~g   93 (301)
                      ..|...+|++.+.+|..+       .......+.|+|.|+|..+.+++.++++.+.+.+++++||++|+ .++++++++|
T Consensus        15 ~~~~v~~pi~~sstf~~~~~~~~~~~~~~~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~G   94 (386)
T PF01053_consen   15 QTGAVNPPIYQSSTFVFDSAEELDAFAGEEKGYIYSRYGNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPG   94 (386)
T ss_dssp             TTTBSS--B---SBBBBSSHHHHHHHTTSSSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TT
T ss_pred             CCCCeeCCccccccCcccchHHHHhhcCCCCCcceeccccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccC
Confidence            689999999999999887       23345668999999999999999999999999999999999999 5888899999


Q ss_pred             CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcC-CEE
Q 022194           94 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG-ALL  172 (301)
Q Consensus        94 ~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~-~~l  172 (301)
                      |+|++++..|++....++..+...|+++.+++..|++++++++++++++|++++|.||+..+.|+++|+++||++| +++
T Consensus        95 d~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~  174 (386)
T PF01053_consen   95 DHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILV  174 (386)
T ss_dssp             BEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EE
T ss_pred             CceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceE
Confidence            9999999999999999988899999999999999999999999999999999999999999999999999999998 999


Q ss_pred             EEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcc-hhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH
Q 022194          173 LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA  251 (301)
Q Consensus       173 i~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  251 (301)
                      ++|++++.+...+++..|+|+++.|++|+++|...+++|+++.++ +.+.+.++......|..+++..++.++++++.+.
T Consensus       175 vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl~  254 (386)
T PF01053_consen  175 VVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTLP  254 (386)
T ss_dssp             EEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHH
T ss_pred             EeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcHH
Confidence            999999999999999999999999999999999999999999887 6777778888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          252 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       252 ~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      .|.+++.++++.+.++|+++|.|..|.+|+++++|+|.+++++++++||
T Consensus       255 ~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg  303 (386)
T PF01053_consen  255 LRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGG  303 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCc
Confidence            9999999999999999999999999999999999999999999998887

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=100.00  E-value=2.3e-42  Score=305.61  Aligned_cols=293  Identities=41%  Similarity=0.654  Sum_probs=258.8

Q ss_pred             CccceeeecCCC-CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-H
Q 022194            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (301)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~   85 (301)
                      +.+|..++.+.. .++.|...+|++.+.++..........+.|+++++|..+++++.++++.+.+++++++||++|+. +
T Consensus         3 ~~~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~~~~~~~Y~R~~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~   82 (382)
T TIGR02080         3 KQATIAVRSGLNSDTQYGCVVPPIYLSTTYNFTGFNEPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLV   82 (382)
T ss_pred             CcccceeecCCCCCCCCCCccCCeeCCceeEeCCcCccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHH
Confidence            455666766522 23469999999999998654432334577999999999999999999999888888888999996 6


Q ss_pred             HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 022194           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (301)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~  165 (301)
                      +..++++||+|++++|.|++....+.......++++..++..|++.+++++++++++|++++|+||||.+.|+++|+++|
T Consensus        83 l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la  162 (382)
T TIGR02080        83 TTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLA  162 (382)
T ss_pred             HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHH
Confidence            66789999999999999998777666666777889988887899999999998999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHc
Q 022194          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (301)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (301)
                      +++|+++++|++|..+....+...++|+++.|++|+++|++++++|+++.+++.+.+++.......+..+++..++.+++
T Consensus       163 ~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr  242 (382)
T TIGR02080       163 KAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLR  242 (382)
T ss_pred             HHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHc
Confidence            99999999999998887767777789999999999999899999999988877888888877788889999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++.+..|.++..+|+..+.++|+++|.|..|+||+++++|+|.+++++.+++||
T Consensus       243 ~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~  297 (382)
T TIGR02080       243 GLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGA  297 (382)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCc
Confidence            9999999999999999999999999999999999999999999999999988876

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=100.00  E-value=6e-42  Score=302.00  Aligned_cols=278  Identities=28%  Similarity=0.476  Sum_probs=248.2

Q ss_pred             CCCccccCeeecceeecCCCC----CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeE
Q 022194           22 PYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEI   96 (301)
Q Consensus        22 ~~g~~~~p~~~~~~~~~~~~~----~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~V   96 (301)
                      ..|...+|++.+.+|..+...    ....+.|+|.|+|..+++++.++++.|.+++++++||++|+. ++.+++++||+|
T Consensus        13 ~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~V   92 (377)
T TIGR01324        13 SQGSVNPPLQRASTVLFDSHAAQRRAKGELTYGRRGTLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHV   92 (377)
T ss_pred             CCCCccCCeeCCCceeeCChhhhcCCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEE
Confidence            468999999999999765421    234578999999999999999999999999999999999985 677789999999


Q ss_pred             EEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeC
Q 022194           97 VAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN  176 (301)
Q Consensus        97 lv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~  176 (301)
                      +++++.|+++...+....+..|+++..++..+.+.+++++++++++|++++|+||+|...|+++|+++|+++|+++|+|+
T Consensus        93 l~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~  172 (377)
T TIGR01324        93 LMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDN  172 (377)
T ss_pred             EEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEEC
Confidence            99999999887655555677899999888766688999999999999999999999999999999999999999999999


Q ss_pred             CcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHH
Q 022194          177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK  256 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  256 (301)
                      +|+.+....+.+.|+|+++.|++|+++|++++.+|+++.+++ ..+.+.......|..+++..++..+++++.+..|.++
T Consensus       173 t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~-~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~~R~~~  251 (377)
T TIGR01324       173 TWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANAR-TWDQLREHSYLMGQMVDADDAYTTLRGLRTLGVRLKQ  251 (377)
T ss_pred             CCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHH-HHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHHHHHHH
Confidence            999999888999999999999999999998888998887754 5455555566678899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +.+++.++.++|+++|.|..|++|+++++|+|.+++++.++.||
T Consensus       252 ~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~  295 (377)
T TIGR01324       252 HQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSG  295 (377)
T ss_pred             HHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCc
Confidence            99999999999999999999999999999999999999886665

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07671 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=9.5e-42  Score=301.43  Aligned_cols=291  Identities=46%  Similarity=0.768  Sum_probs=260.6

Q ss_pred             cceeeecCCC-CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           10 STLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        10 ~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      +|..++.+.. .+..|...+|++.+++|..+.......+.|+++++|...++++.++++.|.+.++++++|++++.+++.
T Consensus         4 ~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~   83 (377)
T PRK07671          4 KTKLIHGGIIGDPSTGAVSVPIYQVSTYKQEAVGKHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM   83 (377)
T ss_pred             ccceeeCCCCCCCCCCCccCCccCCcceecCCCCCcCCCCcCCCCChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH
Confidence            4566665522 233689999999999998766444456789999999999999999999999999999999988877777


Q ss_pred             ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc
Q 022194           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH  168 (301)
Q Consensus        89 ~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~  168 (301)
                      ++++||+|++++|.|++....+...+...|++++.++..|++++++++++++++|++++|+||+|.+.++++|.++|+++
T Consensus        84 ~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~  163 (377)
T PRK07671         84 LFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEK  163 (377)
T ss_pred             HhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc
Confidence            89999999999999997776666677889999999998899999999999999999999999999999999999999999


Q ss_pred             CCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc
Q 022194          169 GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (301)
Q Consensus       169 ~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (301)
                      |+++|+|++|+.+....+...++|+++.|++|+++|+.+..+|+++++++.+.+++...+...+..+++..++.++++++
T Consensus       164 g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~  243 (377)
T PRK07671        164 GLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLK  243 (377)
T ss_pred             CCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcC
Confidence            99999999998877777778899999999999998888777898888877888888888888889999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          249 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      .+..|.++..+|+..+.++|+++|.|..|++|+++++|+|.++++++++.||
T Consensus       244 tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~  295 (377)
T PRK07671        244 TLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGG  295 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCc
Confidence            9999999999999999999999999999999999999999999999987776

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=100.00  E-value=9.1e-42  Score=301.62  Aligned_cols=291  Identities=45%  Similarity=0.747  Sum_probs=260.7

Q ss_pred             cceeeecCCC-CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           10 STLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        10 ~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      +|..++.+.. .++.|...+|++.+.+|..+.......|.|+++++|...+|++.++++.|.+.+++++||+.|+.+++.
T Consensus         4 ~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~   83 (380)
T PRK06176          4 QTKLIHGGISEDTTTGAVSVPIYQTSTYRQDAIGRPKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS   83 (380)
T ss_pred             cceeeECCCCCCCCCCCccCCcccCCceecCCCCCcCCCcccCCCChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH
Confidence            3455665522 234689999999999998766444456889999999999999999999999999999999999987778


Q ss_pred             ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc
Q 022194           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH  168 (301)
Q Consensus        89 ~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~  168 (301)
                      ++++||+|+++++.|++....+...+...|++++.++..|++++++++++++++|++++|+||+|.+.|+++|+++|+++
T Consensus        84 ~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~  163 (380)
T PRK06176         84 LFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDH  163 (380)
T ss_pred             HcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHc
Confidence            89999999999999998887777788889999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc
Q 022194          169 GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (301)
Q Consensus       169 ~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (301)
                      |+++|+|++|+.+....+...++|+++.|++|+++|+++..+|+++.+++.+.+++...+...+..+++..++..+++++
T Consensus       164 gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~  243 (380)
T PRK06176        164 GLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIK  243 (380)
T ss_pred             CCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccC
Confidence            99999999999887777888899999999999998888778999998777787877777777788889999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          249 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      .+..|.+++.+++.++.++|+++|.|..+++|+++++|+|.+++++.+++||
T Consensus       244 tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~  295 (380)
T PRK06176        244 TLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSG  295 (380)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCce
Confidence            9999999999999999999999999999999999999999999999977665

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=100.00  E-value=1.1e-41  Score=301.47  Aligned_cols=290  Identities=71%  Similarity=1.120  Sum_probs=258.3

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHhcc
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL   90 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~~~   90 (301)
                      |..++.+...++.|...+|++.+.+|..+.......+.|++.|+|.++++++.+++++|.++++++++|++|+.+++.++
T Consensus         3 t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~ll   82 (378)
T TIGR01329         3 TLLVNTDNKNDPYDASSMPIYQTATFKQPLAIENGPYDYTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDVITRLL   82 (378)
T ss_pred             ceeEeCCCCCCCCCCcCCCeecCcceecCCccccCCCccCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHh
Confidence            44455442234468999999999999776644445688999999999999999999999999999999999987666789


Q ss_pred             CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCC
Q 022194           91 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA  170 (301)
Q Consensus        91 ~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~  170 (301)
                      ++||+|+++++.|+++...+...++..|++++.++..|++++++++++++++|++++|+||+|.+.|+++|+++||++|+
T Consensus        83 ~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~  162 (378)
T TIGR01329        83 NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNA  162 (378)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCC
Confidence            99999999999999988777777788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccH
Q 022194          171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM  250 (301)
Q Consensus       171 ~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  250 (301)
                      ++|+|++++.+....+...|+|+++.|++|+++|+.++++|+++++++.+.+++.......+..+++..++.++.+++.+
T Consensus       163 ~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl  242 (378)
T TIGR01329       163 LVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL  242 (378)
T ss_pred             EEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH
Confidence            99999999888777777889999999999999988888899999987777777777777678888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ..|.++..+++..+.++|+++|.+..+.+|++++.|+|.+++++.++.||
T Consensus       243 ~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~  292 (378)
T TIGR01329       243 AIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGS  292 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcce
Confidence            99999999999999999999999999999999999999999998866554

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=9e-42  Score=303.17  Aligned_cols=295  Identities=35%  Similarity=0.648  Sum_probs=257.7

Q ss_pred             CCCCccceeeecCCC-CCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEE
Q 022194            5 EEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (301)
Q Consensus         5 ~~~~~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~   75 (301)
                      .+...+|..++.+.. .++.|...+|++.+.+|..+...        +...+.|+++++|..+++++.++++.|.+++++
T Consensus         5 ~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~   84 (398)
T PRK08249          5 NNAGVGTKAVWAGEKEYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGAEAATA   84 (398)
T ss_pred             ccCCcccceeeCCCCCCCCCCCccCCccCCcceecCCHHHHHHhhcCCcCCccccCCCChHHHHHHHHHHHHhCCCeEEE
Confidence            344566777877622 24468999999999999765532        223577999999999999999999999999999


Q ss_pred             ecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccc
Q 022194           76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (301)
Q Consensus        76 ~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~  154 (301)
                      ++||++|+. ++..++++||+|+++.+.|+++...+...++..|+++.+++..|++++++++++++++|++++|+||+|.
T Consensus        85 ~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~  164 (398)
T PRK08249         85 FSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLETPTNPTLK  164 (398)
T ss_pred             eCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEECCCCCCCc
Confidence            999999986 5667899999999999999988777767778899999999988999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCC
Q 022194          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (301)
Q Consensus       155 ~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  234 (301)
                      +.|+++|+++|+++|+++|+|++|+.+....+...++|+++.|++|+++|++..++|+++.+ +.+.+.++......+..
T Consensus       165 v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~-~~l~~~l~~~~~~~g~~  243 (398)
T PRK08249        165 IVDIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGS-KELMEQVYHYREINGAT  243 (398)
T ss_pred             cCCHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECC-HHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999998776666677899999999999977665567887764 56777777777777888


Q ss_pred             CCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++..++.++++++.+..+.++..++++.+.++|+++|.|..|+|||++++|+|+++++++++.||
T Consensus       244 ~s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~  309 (398)
T PRK08249        244 MDPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGG  309 (398)
T ss_pred             CCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999987776

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.4e-41  Score=302.43  Aligned_cols=290  Identities=38%  Similarity=0.626  Sum_probs=255.8

Q ss_pred             ceeeecCCC-CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHh
Q 022194           11 TLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTH   88 (301)
Q Consensus        11 ~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~   88 (301)
                      |..++.+.. .+..|...+|++.+.++..........|.|+++++|..+++++.++++.|.++.+++++|++++. ++..
T Consensus        15 t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~~~~~~~y~R~~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~a   94 (405)
T PRK08776         15 TAAVRAGIDRDTAYGAVTPPIVLSSNFSFDGFGNKRQYDYTRSGNPTRDLLGEALAELEGGAGGVITATGMGAINLVLNA   94 (405)
T ss_pred             chheeCCCCCCCCCCCccCCEeccceEEeCCCCcccCCcccCCCChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHH
Confidence            455665522 23468999999999998765543334678999999999999999999999999999999999986 5667


Q ss_pred             ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc
Q 022194           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH  168 (301)
Q Consensus        89 ~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~  168 (301)
                      ++++||+|+++.|.|++....+...++..|+++..++..|.+++++++++++++|++++|+||+|.+.++++|+++|+++
T Consensus        95 ll~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~  174 (405)
T PRK08776         95 LLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKV  174 (405)
T ss_pred             HhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHc
Confidence            89999999999999998776666667778999999998899999999988999999999999999999999999999999


Q ss_pred             CCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc
Q 022194          169 GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (301)
Q Consensus       169 ~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (301)
                      |+++|+|++|..+....+...|+|+++.|++|+++|++++++|+++.+++.+.+++.......+..+++..+++.+++++
T Consensus       175 gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~  254 (405)
T PRK08776        175 GALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLR  254 (405)
T ss_pred             CCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhC
Confidence            99999999998877667777899999999999998888888999988877787777766666677789999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          249 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++.+.++..+|+..+.++|+++|.|..|.+|++.++|+|+++++++++.||
T Consensus       255 tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~  306 (405)
T PRK08776        255 TLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGA  306 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCce
Confidence            9999999999999999999999999999999999999999999999987776

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=4.9e-42  Score=293.26  Aligned_cols=292  Identities=48%  Similarity=0.727  Sum_probs=269.2

Q ss_pred             ccceeeecCCCCCC--CCccccCee--ecceeecC--CCCCCCC---ccccCCCCchHHHHHHHHHhhcCCCceEEecch
Q 022194            9 VSTLLMNFSNEFDP--YGALSTPLY--QTATFKQP--SATENGP---YDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (301)
Q Consensus         9 ~~~~~~~~~~~~~~--~g~~~~p~~--~~~~~~~~--~~~~~~~---~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG   79 (301)
                      ..+..++.+..++-  -+...+|++  .+.+|...  +......   |.|+|.|+|.++.++..++++.|++.+++++||
T Consensus        22 ~~t~~~~~g~~~~~~~~~~v~~pI~~~~s~tfk~~~~~~~~~~~~~~~~Ysr~~nPt~~~le~~iaal~ga~~~l~fsSG  101 (409)
T KOG0053|consen   22 LDTNLLHAGQDPEKAIHNAVAPPIYATLSTTFKQDLNEGEHGGNLDGYDYSRSGNPTRDVLESGIAALEGAAHALLFSSG  101 (409)
T ss_pred             cchhhhhcccccchhccccccCceecccceeecccCccccccccccccccccCCCCchHHHHHHHHHHhCCceEEEeccc
Confidence            44556666645454  688899999  67776664  2222333   899999999999999999999999999999999


Q ss_pred             HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccH
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l  158 (301)
                      ++|+. ++..++++|++|+..+..|.++.+.++.+....|++...++.++++.+++.+++++++|++++|.||+..+.|+
T Consensus       102 maA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI  181 (409)
T KOG0053|consen  102 MAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKENTKAVFLESPSNPLLKVPDI  181 (409)
T ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHHHHhhccCceEEEEECCCCCccccccH
Confidence            98885 77888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHH
Q 022194          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (301)
Q Consensus       159 ~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (301)
                      ++|+++||++|+++++|++++.+...+++.+|+||++.|.+|+++|...+++|.++.+.+.+.++++..+...++.+++.
T Consensus       182 ~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~  261 (409)
T KOG0053|consen  182 EKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPF  261 (409)
T ss_pred             HHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             hHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          239 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      .++...++++.+..|+++..+++..+.++|+++|.+++++||+|+++|+|+.++++.++++|
T Consensus       262 ~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G  323 (409)
T KOG0053|consen  262 DLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYG  323 (409)
T ss_pred             HHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999988

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=4.2e-41  Score=298.60  Aligned_cols=292  Identities=46%  Similarity=0.760  Sum_probs=257.5

Q ss_pred             ccceeeecCCC-CCCCCccccCeeecceeecCCCCC-CCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-H
Q 022194            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (301)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~~-~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~   85 (301)
                      .++..++.+.. .+..|...+|++.+.+|..+.... ...+.|+++++|...++++.+++++|.+..++++||++|+. +
T Consensus        13 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~   92 (388)
T PRK07811         13 FATRAIHAGYEPDPATGAVNPPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEEQLAALEGGAYGRAFSSGMAATDCL   92 (388)
T ss_pred             cccceeeCCCCCCCCCCCccCCccCCcceecCCcccccCCCcccCCCCccHHHHHHHHHHHhCCCceEEeCCHHHHHHHH
Confidence            45666766522 234689999999999997655322 24567899899999999999999999999999999999986 6


Q ss_pred             HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 022194           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (301)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~  165 (301)
                      +..++++||+|+++++.|.+....+...++..|++++.++..|++++++++++++++|++++|+||+|...++++|+++|
T Consensus        93 l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la  172 (388)
T PRK07811         93 LRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELA  172 (388)
T ss_pred             HHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHH
Confidence            67789999999999999998776666677788999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHc
Q 022194          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (301)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (301)
                      +++|+++|+|++|+.+....+...++|+++.|++|+++|++++++|+++++++.+.+.+.......+...++..++..+.
T Consensus       173 ~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~  252 (388)
T PRK07811        173 HDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLR  252 (388)
T ss_pred             HHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            99999999999999887777777899999999999998888888999998877887777777666777888889999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++.+..+.++..+|++.+.++|+++|.|..|.+|+++++|+|++++++.++.||
T Consensus       253 ~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~  307 (388)
T PRK07811        253 GLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGG  307 (388)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCc
Confidence            9999999999999999999999999999999999999999999999999987776

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=3.8e-41  Score=298.15  Aligned_cols=285  Identities=40%  Similarity=0.620  Sum_probs=248.6

Q ss_pred             cceeeecCCCCCCCCccccCeeecceeecCCC----CCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-
Q 022194           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSA----TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (301)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~----~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-   84 (301)
                      +|..++-+...++.|...+|++.+.+|..+..    .....+.|++.++|..+++++.+++++|.+++++++||++|+. 
T Consensus         4 ~t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~y~r~~np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~   83 (385)
T PRK08574          4 GTDAVRGYRGSDPYGSLQPPIYLTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAFNSGMAAIST   83 (385)
T ss_pred             cceeeecCCCCCCCCCccCCccCCcceecCcchhhcCCcCCceEECCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHH
Confidence            34555544334567999999999999976542    1223477999999999999999999999999999999999985 


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHH
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAE  163 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~  163 (301)
                      ++.+++++||+|+++.+.|.++...+... ...|+++..++. |.+++++++++ ++++|++++|+||+|.+.|+++|++
T Consensus        84 ~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~-~~~g~~v~~~~~-d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~  161 (385)
T PRK08574         84 LFFSLLKAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAK  161 (385)
T ss_pred             HHHHHhCCCCEEEEcCCCchhHHHHHHHh-hccCcEEEEECC-CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHH
Confidence            66778999999999999999987666443 678888888765 58899999987 8999999999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHH
Q 022194          164 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (301)
Q Consensus       164 l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (301)
                      +||++|+++|+|++|+.+....+...|+|+++.|++|+++|+++..+|+++++++.+.+++.......+..+++..++.+
T Consensus       162 la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~  241 (385)
T PRK08574        162 AAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLV  241 (385)
T ss_pred             HHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999999999999998877777788999999999999988877778877777777877777667777888999999999


Q ss_pred             HcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhc
Q 022194          244 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVL  296 (301)
Q Consensus       244 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~  296 (301)
                      +++++.+..|.++..+++.++.++|+++|.|..|.||+++++|+|.+++++++
T Consensus       242 l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  294 (385)
T PRK08574        242 LRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFG  294 (385)
T ss_pred             HcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999986

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=100.00  E-value=2.2e-41  Score=301.19  Aligned_cols=291  Identities=34%  Similarity=0.530  Sum_probs=254.9

Q ss_pred             cceeeecCCCCCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHH
Q 022194           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMA   81 (301)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~   81 (301)
                      +|..++.+...+..|...+|++.+.+|..+...        ....+.|+++++|..+++++.++++.|.+++++++||+.
T Consensus        17 ~t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~al~~~sG~~   96 (403)
T PRK07810         17 ATIGVRGGLLRSGFEETAEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFATASGMS   96 (403)
T ss_pred             chhheeCCCCCCCCCCccCCccCCCccccCCHHHHHHHhccCcCCcceeCCCCchHHHHHHHHHHHhCCCcEEEECChHH
Confidence            456666653334568888999999987554421        224467999999999999999999999999999999998


Q ss_pred             HHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 022194           82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK  160 (301)
Q Consensus        82 ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~  160 (301)
                      |+. ++..++++||+|++++..|++....+...++..|++++.++..|++++++++++++++|++++|+||+|.+.|+++
T Consensus        97 Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~  176 (403)
T PRK07810         97 AVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAA  176 (403)
T ss_pred             HHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCeecCHHH
Confidence            885 6667899999999999888887766667788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhH
Q 022194          161 IAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC  240 (301)
Q Consensus       161 l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (301)
                      |+++||++|+++|+|++|+.+....+...|+|+++.|++|+++|+++..+|+++++++.+.+.++......+..+++..+
T Consensus       177 I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a  256 (403)
T PRK07810        177 VSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNA  256 (403)
T ss_pred             HHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHH
Confidence            99999999999999999998888778888999999999999987766678999988765655555555567788999999


Q ss_pred             HHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       241 ~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +.++++++.+..|.++..+++.++.++|+++|.|..|.||+++++|+|.+++++.+++||
T Consensus       257 ~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~  316 (403)
T PRK07810        257 WVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGT  316 (403)
T ss_pred             HHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCce
Confidence            999999999999999999999999999999999999999999999999999999988776

>PRK08064 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=6.5e-41  Score=297.60  Aligned_cols=294  Identities=45%  Similarity=0.791  Sum_probs=262.6

Q ss_pred             CCccceeeecCCCCC-CCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHH
Q 022194            7 PGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (301)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~   85 (301)
                      .+++|..++.+...+ ..|...+|++.+.++..+.......+.|++.++|..+++++.+++++|.++.+++++|+.|+.+
T Consensus         5 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~   84 (390)
T PRK08064          5 YSIDTLLLHNQYKHDKQTGAVNVPIYHASTFHQFDFDTFGKYDYSRSGNPTREALEDIIAELEGGTKGFAFASGMAAIST   84 (390)
T ss_pred             CCcccceeeCCCCCCCCCCCccCCcccCcceecCcccccCCCcccCCCChhHHHHHHHHHHHhCCCCeEEECCHHHHHHH
Confidence            345666777652222 3699999999999998777655567889999999999999999999999999999999999875


Q ss_pred             HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 022194           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (301)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~  165 (301)
                      ++.++++||+|+++++.|++....+...++..|++++.++..|++++++++++++++|++++|+||+|.+.|+++|.++|
T Consensus        85 ~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la  164 (390)
T PRK08064         85 AFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLA  164 (390)
T ss_pred             HHHHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHH
Confidence            55688999999999999998877777777889999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHc
Q 022194          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (301)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (301)
                      +++|+++|+|++|+.+....+.+.|+|+++.|+||+++|++++++|+++.+++.+.+.+.......+...++..++..++
T Consensus       165 ~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~  244 (390)
T PRK08064        165 KAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLR  244 (390)
T ss_pred             HHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence            99999999999999887666777899999999999999998888999988877788888888887888889999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++.+..|.++..+++..+.++|+++|.|..+++|++++.|++++++++.+++||
T Consensus       245 gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg  299 (390)
T PRK08064        245 GLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGA  299 (390)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcce
Confidence            9999999999999999999999999999999999999999999999999888776

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=6e-41  Score=300.05  Aligned_cols=299  Identities=37%  Similarity=0.591  Sum_probs=254.3

Q ss_pred             CCCCCCCccceeeecCCCC-CCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCc
Q 022194            2 SVEEEPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADR   72 (301)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~   72 (301)
                      +-.++.+.+|..++.+... +..|...+|++.+.+|..+...        ....+.|++.++|..+.+++.++++.|.+.
T Consensus         2 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~leg~~~   81 (431)
T PRK08248          2 SEERTFRLETLAIHAGQEIDPTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDVFEKRIAALEGGIG   81 (431)
T ss_pred             cccccCCcchhheeCCcCCCCCCCCccCCeeCCCccccCCHHHHHhhhccccCCceeECCCCchHHHHHHHHHHHhCCCc
Confidence            3344455667788776322 3368999999999998765431        234567899999999999999999999999


Q ss_pred             eEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCC
Q 022194           73 ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (301)
Q Consensus        73 ~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np  151 (301)
                      +++++||++|+. ++..++++||+|+++++.|++....+...++..|++++.++..|++++++++++++++|++++|+||
T Consensus        82 al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NP  161 (431)
T PRK08248         82 ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGNP  161 (431)
T ss_pred             EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEECCCCC
Confidence            999999999985 7778899999999999999988777777788999999999999999999999999999999999999


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhH-----------
Q 022194          152 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-----------  220 (301)
Q Consensus       152 ~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~-----------  220 (301)
                      ||.+.|+++|+++|+++|+++|+|++++.+....+.+.|+|+++.|++|+++|++...+|+++.+.+..           
T Consensus       162 tG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~  241 (431)
T PRK08248        162 KGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLT  241 (431)
T ss_pred             CCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCcccccccccccccc
Confidence            999999999999999999999999999877777777889999999999999887666677776543211           


Q ss_pred             ---------------------HHHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEec
Q 022194          221 ---------------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNY  279 (301)
Q Consensus       221 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~  279 (301)
                                           .+.........|..+++..++.++++++.+..|.+++.+++..+.++|+++|.|..|++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~y  321 (431)
T PRK08248        242 EPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSY  321 (431)
T ss_pred             CCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEEC
Confidence                                 11122345566889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcchHHHHhhhc-cCCC
Q 022194          280 AGLPEHPGHELHYSQVL-SDNG  300 (301)
Q Consensus       280 p~~~~~~~~~~~~~~~~-~~~~  300 (301)
                      |+++++|+|.+++++.. +.||
T Consensus       322 Pgl~s~p~~~~~~~~~~~g~gg  343 (431)
T PRK08248        322 PGLPSHPSYELAKKYLPKGQGA  343 (431)
T ss_pred             CCCCCCccHHHHHHhCcCCCce
Confidence            99999999999999984 4454

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=100.00  E-value=1.2e-40  Score=295.86  Aligned_cols=291  Identities=38%  Similarity=0.689  Sum_probs=251.6

Q ss_pred             ccceeeecCC-CCCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecch
Q 022194            9 VSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (301)
Q Consensus         9 ~~~~~~~~~~-~~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG   79 (301)
                      ++|..++.+. ..+..|...+|++.+.+|..+...        ....|.|+++++|..+++++.+++++|.+.+++++||
T Consensus         4 ~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~av~~~sG   83 (391)
T TIGR01328         4 FATRAIHAGYPPKDQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVATSSG   83 (391)
T ss_pred             cccceeeCCccCCCCCCCccCCcccCcceecCChHHHHHhhcCCcCCCceeCCCCchHHHHHHHHHHHhCCCcEEEECCH
Confidence            4566777662 233468999999999999765431        2245789999999999999999999999999999999


Q ss_pred             HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccH
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l  158 (301)
                      ++|+. ++.+++++||+|+++++.|.+....+...+...|+++++++.+|++++++++++++++|++++|+||+|.+.|+
T Consensus        84 ~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~dl  163 (391)
T TIGR01328        84 MGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLIDM  163 (391)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEECCCCCCCcccCH
Confidence            98885 66678899999999999998887777777888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh--hhhcCCCCC
Q 022194          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSGLA  236 (301)
Q Consensus       159 ~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~  236 (301)
                      ++|+++|+++|+++|+|++|+.+....+...++|+++.|++|+++++++.++|+++.++ .+.++++..  ....+..++
T Consensus       164 ~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~-~li~~l~~~~~~~~~g~~l~  242 (391)
T TIGR01328       164 ERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKA-ELLQQIRMVGIKDMTGSVIS  242 (391)
T ss_pred             HHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCH-HHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999988777777889999999999999877666678887654 555555432  223456788


Q ss_pred             HHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +..++.++.+++.+..++++..++++++.++|+++|.|..|.+|+++++|+|++++++++++||
T Consensus       243 ~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~  306 (391)
T TIGR01328       243 PFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGG  306 (391)
T ss_pred             cHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCc
Confidence            8999999999999999999999999999999999999999999999999999999999988776

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=100.00  E-value=2.1e-40  Score=294.84  Aligned_cols=293  Identities=34%  Similarity=0.567  Sum_probs=252.7

Q ss_pred             CccceeeecCCCCCCCCccccCeeecceeecCCC--------CCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecch
Q 022194            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (301)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG   79 (301)
                      ++++..++.+...+..+...+|++.+.++..+..        .....+.|+++++|..+++++.+++++|.+..+++++|
T Consensus        10 ~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~G~~~~~~~~sG   89 (398)
T PRK07504         10 RPATRLVHSGTLRSQFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDARATASG   89 (398)
T ss_pred             CcccceeeCCCCCCCCCCCcCCeECCCCccCCCHHHHHHHhccCcCCceeecCCCchHHHHHHHHHHHhCCCeeeEecCH
Confidence            3456677766323456888899999988765432        12345778899999999999999999999988999999


Q ss_pred             HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccH
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l  158 (301)
                      +.|+. ++..++++||+|+++++.|+++...+...++..|++++.++..|++++++++++++++|++++|+||+|.+.|+
T Consensus        90 ~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl  169 (398)
T PRK07504         90 MAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDI  169 (398)
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCcEecCH
Confidence            98885 56678999999999999999887666666778899999999889999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHH
Q 022194          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (301)
Q Consensus       159 ~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (301)
                      ++|.++|+++|+++|+|++|+.+....+...|+|+++.|++|+++|++...+|+++.+++.+.+.++......+..+++.
T Consensus       170 ~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~  249 (398)
T PRK07504        170 AAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPF  249 (398)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHH
Confidence            99999999999999999999988777777889999999999999776555567888776655554555555667889999


Q ss_pred             hHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          239 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      .++.++++++.+..|.++..++++.+.++|+++|.|..|+|||++++|+|.+++++++++||
T Consensus       250 ~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~  311 (398)
T PRK07504        250 NAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGST  311 (398)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999988776

>PRK07050 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=2.2e-40  Score=294.22  Aligned_cols=294  Identities=25%  Similarity=0.438  Sum_probs=260.5

Q ss_pred             CCccceeeecCCC-CCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEec
Q 022194            7 PGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (301)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~   77 (301)
                      ...+|..++.+.. .+..|...+|++.+.+|..+...        +...+.|+++++|..+++++.++++.|.+.+++++
T Consensus         8 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~~~   87 (394)
T PRK07050          8 RALQTRIVQPDDQIPPGFRSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALLQP   87 (394)
T ss_pred             CCccchheECCCCCCCCCCCccCCeeCCcceecCCHHHHHhhcccccCCcccCCCCCHHHHHHHHHHHHHhCCCeEEEec
Confidence            3455777776622 34468999999999999765531        23457899999999999999999999999999999


Q ss_pred             chHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        78 sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                      ||++|+. ++..++++||+|+++++.|..+...+...+...|+++..++..+.+++++++++++++|++++|+||+|...
T Consensus        88 sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le~p~Np~~~~~  167 (394)
T PRK07050         88 SGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPGSVTMEVP  167 (394)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCccHh
Confidence            9999986 666789999999999999999876666677888999999988778889999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCC
Q 022194          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (301)
Q Consensus       157 ~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
                      ++++|+++|+++|+++|+|++|..+....+...|+|+++.|++|+++|+.++++|+++++++.+.++++......|.+++
T Consensus       168 di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~  247 (394)
T PRK07050        168 DVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVS  247 (394)
T ss_pred             hHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999998888888899999999999999888888999998888888888877777888999


Q ss_pred             HHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +..++.++++++.+..|.++..+++.++.++|+++|.|..+++|+++++|++..++++..+.||
T Consensus       248 ~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~  311 (394)
T PRK07050        248 ADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGG  311 (394)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCce
Confidence            9999999999999999999999999999999999999999999999999999999988766554

>PRK06460 hypothetical protein; Provisional

Probab=100.00  E-value=3.1e-40  Score=291.89  Aligned_cols=287  Identities=34%  Similarity=0.575  Sum_probs=248.1

Q ss_pred             ccceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHH
Q 022194            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVT   87 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~   87 (301)
                      .+|..++.+ ..+..|...+|++.+.+|..+..   ..+.|++.++|..+++++.+++++|.+..+++++|++|+. ++.
T Consensus         3 ~~t~~~~~~-~~~~~~~~~~pi~~~~~~~~~~~---~~~~y~r~~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~   78 (376)
T PRK06460          3 DATRTVRED-IDEATGAITTPIYQTTAYHYPEG---EKYRYSREANPTVLELTKKIVELENAEMGVAFSSGMGAISTTAL   78 (376)
T ss_pred             cceeeeecC-CCCCCCCccCCccCCcceeeCCC---CCcceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHH
Confidence            456667766 34556889999999999977652   3678999999999999999999999998999999999986 567


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA  167 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~  167 (301)
                      .++++||+|+++.+.|.+....+...++..|+++..++.++.+.+++.+++++++|++++|+||+|.+.|+++|+++|++
T Consensus        79 al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~  158 (376)
T PRK06460         79 ALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKE  158 (376)
T ss_pred             HHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHH
Confidence            78999999999998887766666677788899999998877666776667789999999999999999999999999999


Q ss_pred             cCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc
Q 022194          168 HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (301)
Q Consensus       168 ~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (301)
                      +|+++|+|++|+.+....+...++|+++.|+||+++|+++.++|+++.+ +.+.+.+.......+..+++..++.+++++
T Consensus       159 ~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~-~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~  237 (376)
T PRK06460        159 NGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGY-GKLLNVIDQMRRTLGTSLDPHAAYLTLRGI  237 (376)
T ss_pred             cCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecC-HHHHHHHHHHHHhcCCCCCHHHHHHHHhch
Confidence            9999999999987655555566899999999999987777889998876 456677766666677778888888888999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +.+..+++++.++++++.++|+++|.|..|++|+|+++|+|++++++.++.||
T Consensus       238 ~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg  290 (376)
T PRK06460        238 KTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGG  290 (376)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCce
Confidence            99999999999999999999999999999999999999999999999988776

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2.2e-40  Score=294.34  Aligned_cols=293  Identities=32%  Similarity=0.505  Sum_probs=252.9

Q ss_pred             CccceeeecCCCCCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecch
Q 022194            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (301)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG   79 (301)
                      .++|..++.+...+..|...+|++.+.+|..+...        ....+.|++.++|.++++++.++++.|.+.+++++||
T Consensus         6 ~~~t~~~~~g~~~~~~~~~~~PI~~sst~~f~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~av~~~SG   85 (432)
T PRK06702          6 GKGTICVQGGYTPKNGEPRVLPLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASG   85 (432)
T ss_pred             CcchHheeCCCCCCCCCCccCCccCCcceecCCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcEEEECCH
Confidence            45677777762233468999999999999765521        1234668888999999999999999999999999999


Q ss_pred             HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-CHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-DLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                      ++|+. ++.+++++||+|+++.+.|.++...+...+...|+++.+++.. |++.+++++++++++|++++|.||++.+.|
T Consensus        86 ~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D  165 (432)
T PRK06702         86 QAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVYAESLGNPAMNVLN  165 (432)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEEEEcCCCccccccC
Confidence            99996 6677899999999999999988877666678899999999985 899999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcch---------hH--------
Q 022194          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE---------RL--------  220 (301)
Q Consensus       158 l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~---------~~--------  220 (301)
                      +++|+++|+++|+++|+|++++.+....+.+.|+|+++.|++|+++|+.+.++|+++....         .+        
T Consensus       166 i~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~  245 (432)
T PRK06702        166 FKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYH  245 (432)
T ss_pred             HHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCccccccccccccccccccc
Confidence            9999999999999999999999988889999999999999999999999988988874221         11        


Q ss_pred             --------------HHHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCc
Q 022194          221 --------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  286 (301)
Q Consensus       221 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~  286 (301)
                                    .+.........+..+++..++.++++++.+..|.++..+|+..+.++|+++|.|..|.+|+++++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p  325 (432)
T PRK06702        246 GVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNE  325 (432)
T ss_pred             ccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCc
Confidence                          111223344567889999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHhhh-ccCCC
Q 022194          287 GHELHYSQV-LSDNG  300 (301)
Q Consensus       287 ~~~~~~~~~-~~~~~  300 (301)
                      +|.++++++ ++.||
T Consensus       326 ~~~l~~~~~~~g~gg  340 (432)
T PRK06702        326 NYSLAQKYLKKGASG  340 (432)
T ss_pred             cHHHHHHhCcCCCce
Confidence            999999999 55554

>PRK07503 methionine gamma-lyase; Provisional

Probab=100.00  E-value=5.1e-40  Score=292.86  Aligned_cols=293  Identities=40%  Similarity=0.657  Sum_probs=252.1

Q ss_pred             CCccceeeecCCC-CCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEec
Q 022194            7 PGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (301)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~   77 (301)
                      ...+|..++.+.. .+..|...+|++.+.+|..+...        ....+.|+++++|..+++++.+++++|.+..++++
T Consensus         8 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~~   87 (403)
T PRK07503          8 TGFSTRAIHHGYDPLDHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVALA   87 (403)
T ss_pred             CCccchheeCCCCCCCCCCCccCCcccCcceecCChHHHHHhhccccCCceeeCCCCchHHHHHHHHHHHhCCCcEEEEc
Confidence            3455677776622 33469999999999999765431        22457789999999999999999999999999999


Q ss_pred             chHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        78 sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                      ||++|+. ++..++++||+|+++.+.|......+...+...|++++.++.+|++.+++++++++++|++++|+||+|.+.
T Consensus        88 sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~~  167 (403)
T PRK07503         88 SGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYFETPANPNMRLV  167 (403)
T ss_pred             CHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEEeCCCCCCCeee
Confidence            9999985 556788999999999999987766565667789999999999999999999998999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHH--hhhhcCCC
Q 022194          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSG  234 (301)
Q Consensus       157 ~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~--~~~~~~~~  234 (301)
                      |+++|.++|+++|+++|+|++|+.+....+...++|+++.|++|+++|++++++|+++.+ +.+.++++.  .....+..
T Consensus       168 di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~-~~l~~~l~~~~~~~~~g~~  246 (403)
T PRK07503        168 DIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGG-KALADRIRLEGLKDMTGAV  246 (403)
T ss_pred             CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcC-HHHHHHHHhhhHHhCcCCC
Confidence            999999999999999999999998776677778899999999999987777889999854 556666553  24445678


Q ss_pred             CCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++..++.++++++.+..+.++..+++..+.++|+++|.|..|.+|++.++|.|.+++++.++.||
T Consensus       247 ~s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~  312 (403)
T PRK07503        247 MSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGG  312 (403)
T ss_pred             CCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCc
Confidence            899999999999999999999999999999999999999999999999999999999999877665

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=100.00  E-value=5.6e-40  Score=290.48  Aligned_cols=277  Identities=55%  Similarity=0.887  Sum_probs=248.0

Q ss_pred             CccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCC
Q 022194           24 GALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGE   94 (301)
Q Consensus        24 g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~   94 (301)
                      |...+|++.+.+|..+...        ....+.|+++++|..+++++.+++++|.+++++++||++|+. ++..++++||
T Consensus         1 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd   80 (369)
T cd00614           1 GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGD   80 (369)
T ss_pred             CCcCCCccCCCceecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCC
Confidence            4567899999998765532        234577899899999999999999999999999999999986 6667889999


Q ss_pred             eEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEE
Q 022194           95 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV  174 (301)
Q Consensus        95 ~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~  174 (301)
                      +|+++.+.|++....+...++..|+++..++.+|++++++++++++++|++++|+||+|.+.|+++|+++|+++|+++|+
T Consensus        81 ~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~liv  160 (369)
T cd00614          81 HVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVV  160 (369)
T ss_pred             EEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE
Confidence            99999999999887776777888999999999999999999988999999999999999999999999999999999999


Q ss_pred             eCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHHHH
Q 022194          175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV  254 (301)
Q Consensus       175 D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  254 (301)
                      |++|+.+....+...++|+++.|++|+++|++++++|+++++++.+.+++.......+..+++..+++++++++.+..+.
T Consensus       161 D~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r~  240 (369)
T cd00614         161 DNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRM  240 (369)
T ss_pred             ECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHHHHH
Confidence            99999888777788899999999999998877788999999875677777776666788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++.++++++.++|++++.|..|.+|+++++|+|++++++.++.||
T Consensus       241 ~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~  286 (369)
T cd00614         241 ERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGG  286 (369)
T ss_pred             HHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCce
Confidence            9999999999999999999999999999999999999999877665

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=100.00  E-value=6.4e-40  Score=291.27  Aligned_cols=291  Identities=38%  Similarity=0.651  Sum_probs=251.1

Q ss_pred             ccceeeecCCCCCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchH
Q 022194            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM   80 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~   80 (301)
                      ++|..++.+...+..|...+|++.+.++..+...        ....+.|+++++|..+++++.+++++|.+++++++||+
T Consensus         7 ~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~v~~ssG~   86 (390)
T PRK08133          7 FDTLAVRAGQLRSPFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEACVATASGM   86 (390)
T ss_pred             cchhheeCCCCCCCCCCccCCccCCCCcccCCHHHHHHhhcCCcCCceeECCCChHHHHHHHHHHHHhCCCcEEEECCHH
Confidence            4566677663345578888999999988654421        12346788889999999999999999999999999999


Q ss_pred             HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 022194           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (301)
Q Consensus        81 ~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~  159 (301)
                      +|+. ++.+++++||+|+++++.|.+....+...+...|++++.++.+|.+++++++++++++|++++|+||+|.+.|++
T Consensus        87 ~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~  166 (390)
T PRK08133         87 AAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELADIA  166 (390)
T ss_pred             HHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHH
Confidence            9985 667789999999999999998887776777889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHh
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  239 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (301)
                      +|+++|+++|+++|+|++++.+....+...|+|+++.|+||++++++...+|+++.+++ +.+.+.......+..+++..
T Consensus       167 ~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~-~~~~~~~~~~~~g~~~~~~~  245 (390)
T PRK08133        167 ALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKE-LMEEVFGFLRTAGPTLSPFN  245 (390)
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHH-HHHHHHHHHHHhCCCCCHHH
Confidence            99999999999999999998887777777899999999999997655445688877654 44555555566677889999


Q ss_pred             HHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          240 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ++.++++++.+..|.+++.+++..+.++|+++|.|..+++|++++.|+|++++++.+++||
T Consensus       246 a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~  306 (390)
T PRK08133        246 AWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGA  306 (390)
T ss_pred             HHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCce
Confidence            9999999999999999999999999999999999999999999999999999999987776

>PRK05939 hypothetical protein; Provisional

Probab=100.00  E-value=8e-40  Score=290.37  Aligned_cols=276  Identities=34%  Similarity=0.569  Sum_probs=238.8

Q ss_pred             CccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCC
Q 022194           24 GALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGE   94 (301)
Q Consensus        24 g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~   94 (301)
                      |...+|++.+.+|..+...        ....|.|++.|+|..+++++.++++.|.+.++++++|++|+. ++..++++||
T Consensus         8 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd   87 (397)
T PRK05939          8 GAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGD   87 (397)
T ss_pred             CCccCCccCCCCeecCCHHHHHHhhcCCcCCCCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCC
Confidence            7889999999998765421        223578999999999999999999999999999999999986 6667899999


Q ss_pred             eEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEE
Q 022194           95 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV  174 (301)
Q Consensus        95 ~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~  174 (301)
                      +|+++++.|+++...+. .++..|++++.++..|.+++++++++++++|++++|+||+|.+.|+++|+++||++|+++|+
T Consensus        88 ~Vv~~~~~y~~t~~~~~-~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~liv  166 (397)
T PRK05939         88 HLVSSQFLFGNTNSLFG-TLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVV  166 (397)
T ss_pred             EEEECCCccccHHHHHH-HHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence            99999999988876663 35678999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcch--------h-------------HHHHHHHhhhhcCC
Q 022194          175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------R-------------LAKELYFLQNAEGS  233 (301)
Q Consensus       175 D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~--------~-------------~~~~~~~~~~~~~~  233 (301)
                      |++++.+...++...|+|+++.|+||+++|+++.++|+++.+..        .             +.+.........|.
T Consensus       167 D~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  246 (397)
T PRK05939        167 DNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGA  246 (397)
T ss_pred             ECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCC
Confidence            99998877667888899999999999998887776776653221        0             01111122335688


Q ss_pred             CCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          234 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      .+++..++.++++++.+..|.+++.+|+..+.++|+++|.|..|++|+++++|+|+++++++++.||
T Consensus       247 ~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~  313 (397)
T PRK05939        247 TLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGG  313 (397)
T ss_pred             CCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCce
Confidence            8999999999999999999999999999999999999999999999999999999999999987776

>PRK07582 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=2.2e-39  Score=285.72  Aligned_cols=288  Identities=36%  Similarity=0.538  Sum_probs=247.1

Q ss_pred             ccceeeecCCC-CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-HH
Q 022194            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (301)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~   86 (301)
                      .+|..++.+.. .+..|...+|++.+.+|..+.......+.|+++++|...++++.++++. .++++++++|++|+. ++
T Consensus         4 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~ry~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l   82 (366)
T PRK07582          4 DGTRSVHAGGPEAVPGEPVLPGPVFAAPYHLSPGEPTGPDTYGRASNPTWRALEAALGELE-GAEALVFPSGMAAITAVL   82 (366)
T ss_pred             cccceeeCCCCCCCCCCCccCCccccceEEccCccccCCceeECCCCccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHH
Confidence            44566665522 2336899999999999976643333457799999999999999999999 678999999999885 66


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~  166 (301)
                      .+++++||+|+++++.|+++...+...++..|++++.++.++...   .+.+++++|++++|+||+|.+.|+++|+++|+
T Consensus        83 ~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~---~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~  159 (366)
T PRK07582         83 RALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE---AALAGADLVLAETPSNPGLDVCDLAALAAAAH  159 (366)
T ss_pred             HHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH---HhccCceEEEEECCCCCCCCccCHHHHHHHHH
Confidence            678999999999999999887655555677899999999765432   33468999999999999999999999999999


Q ss_pred             HcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcc
Q 022194          167 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (301)
Q Consensus       167 ~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (301)
                      ++|+++++|++|..+....+...++|+++.|++|+++|++|+++|+++.+++.+.+.+.......+..+++..++.++++
T Consensus       160 ~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~  239 (366)
T PRK07582        160 AAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRS  239 (366)
T ss_pred             HcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence            99999999999976555556677899999999999999999999999987777878777777777888899999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       247 l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ++.+..+.++..+++..+.++|+++|.|..|.+|+++++|+|.+++++.++.||
T Consensus       240 l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg  293 (366)
T PRK07582        240 LGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGG  293 (366)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999999999999988876

>PRK06234 methionine gamma-lyase; Provisional

Probab=100.00  E-value=1.7e-39  Score=289.46  Aligned_cols=291  Identities=40%  Similarity=0.645  Sum_probs=251.9

Q ss_pred             ccceeeecCCC-CCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecch
Q 022194            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (301)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG   79 (301)
                      .+|..++.+.. .+..|...+|++.+.++..+...        +...+.|+++++|...+|++.+++++|.+++++++||
T Consensus         9 ~~t~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~iA~~~g~~~~l~~~sG   88 (400)
T PRK06234          9 FATKAIHGGHIGDKQFGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAVVAASG   88 (400)
T ss_pred             ccchheECCCCCCCCCCCccCCcccccceecCChHHHHHhhccCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEEcCH
Confidence            45666776522 34468899999999998765532        1344669999999999999999999999999999999


Q ss_pred             HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccH
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l  158 (301)
                      ++|+. ++..++++||+|++++|.|+.+...+...++..|++++.++..|++++++++++++++|++++|+||+|.+.|+
T Consensus        89 ~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~iesP~NPtG~v~dl  168 (400)
T PRK06234         89 MGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLETPANPTLKVTDI  168 (400)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEECCCCCCCCcCCH
Confidence            98885 66778999999999999999887766667788999999999999999999999899999999999999999999


Q ss_pred             HHHHHHHHHc--CCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh--hhhcCCC
Q 022194          159 RKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSG  234 (301)
Q Consensus       159 ~~l~~l~~~~--~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~  234 (301)
                      ++|.++|+++  |+++|+|++|+.+....+...++|+++.|++|+++|++..++|+++++++ +.+.++..  ....+..
T Consensus       169 ~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~-~~~~l~~~~~~~~~g~~  247 (400)
T PRK06234        169 KAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEE-FINQVKLFGIKDMTGSV  247 (400)
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHH-HHHHHHHHHHHHhcCCC
Confidence            9999999997  99999999999887777777799999999999998766566799988754 55655432  3345788


Q ss_pred             CCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++..++..+++++.+..+.+++.++++++.++|+++|.|..|++|+++++|+|.+++++.++.||
T Consensus       248 l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~  313 (400)
T PRK06234        248 IGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGA  313 (400)
T ss_pred             CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCc
Confidence            899999999999999999999999999999999999999999999999999999999999987776

>PRK07049 methionine gamma-lyase; Validated

Probab=100.00  E-value=1.8e-39  Score=290.67  Aligned_cols=293  Identities=31%  Similarity=0.551  Sum_probs=248.6

Q ss_pred             CCccceeeecCCCCCC-CCccccCeeecceeecCCCCC------------------CCCccccCCCCchHHHHHHHHHhh
Q 022194            7 PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATE------------------NGPYDYTRSGNPTRDALESLLAKL   67 (301)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~g~~~~p~~~~~~~~~~~~~~------------------~~~~~y~~~g~~~~~~l~~~l~~~   67 (301)
                      ...+|..++.+...+. .|...+|++.+++|..+....                  ...+.|+++++|....|++.++++
T Consensus        16 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~Pt~~~Le~~lA~l   95 (427)
T PRK07049         16 LHPETQMLNYGYDPELSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAVY   95 (427)
T ss_pred             CCcccceeeCCCCCCCCCCCccCCccCccceecCChHHHHhhhhccccccccccccccCccccCCCCcCHHHHHHHHHHH
Confidence            3445677776622233 699999999999997654210                  123678999999999999999999


Q ss_pred             cCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEec-CCCHHHHHhhcC-----CCc
Q 022194           68 DKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIG-----PWT  140 (301)
Q Consensus        68 ~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~l~-----~~~  140 (301)
                      .+.++++++++|++|+. ++.+++++||+|++++|.|+++...+...++..|++++.++ ..|.+++++.+.     +++
T Consensus        96 eg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~t  175 (427)
T PRK07049         96 EGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGRV  175 (427)
T ss_pred             hCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCCc
Confidence            99999999999999985 66788999999999999999998666566677898855554 347777776663     578


Q ss_pred             eEEEEeCCCCCccccccHHHHHHHHHH------cCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEE
Q 022194          141 KLVWVESPTNPRQQICDIRKIAEMAHA------HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA  214 (301)
Q Consensus       141 ~~v~i~~~~np~G~~~~l~~l~~l~~~------~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~  214 (301)
                      ++|++++|+||||.+.++++|.++++.      +++++|+|++|.......+...++|+++.|+||+++|++|+|+|+++
T Consensus       176 klv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~vv  255 (427)
T PRK07049        176 SLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVL  255 (427)
T ss_pred             eEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEEEEEE
Confidence            999999999999999999999999987      89999999999877666777788999999999999888999999998


Q ss_pred             EcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCC--CCCcchHHHH
Q 022194          215 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL--PEHPGHELHY  292 (301)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~--~~~~~~~~~~  292 (301)
                      .+ +.+.+.+.......+..+++..+++++++++.+..++++..++++.+.++|+++|.|..|.||++  +++|+|.+++
T Consensus       256 ~~-~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~  334 (427)
T PRK07049        256 GR-KALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYK  334 (427)
T ss_pred             CC-HHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHH
Confidence            76 45777777777777888999999999999999999999999999999999999999999999986  9999999999


Q ss_pred             hhhccCCC
Q 022194          293 SQVLSDNG  300 (301)
Q Consensus       293 ~~~~~~~~  300 (301)
                      ++.++.||
T Consensus       335 ~~~~g~g~  342 (427)
T PRK07049        335 RQCTGAGS  342 (427)
T ss_pred             hhCCCCcc
Confidence            99977776

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2e-39  Score=290.09  Aligned_cols=300  Identities=36%  Similarity=0.544  Sum_probs=254.9

Q ss_pred             CCCCCCCCccceeeecCCC-CCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCC
Q 022194            1 MSVEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKAD   71 (301)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~   71 (301)
                      |-.|.+...+|..++.+.. .+..|...+|++.+.+|..+...        ....+.|++.++|..+++++.++++.|.+
T Consensus         1 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~y~R~~~p~~~~le~~lA~l~g~~   80 (433)
T PRK08134          1 MPGMSPPGFDTLALHAGAAPDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAVLEERVAALEGGV   80 (433)
T ss_pred             CCCCCCCCcchhheeCCCCCCCCCCCccCCccCCCccccCCHHHHHHhhcccccCceeecCcChHHHHHHHHHHHHhCCC
Confidence            5567777788888887632 33468999999999999765531        23457899999999999999999999999


Q ss_pred             ceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCC
Q 022194           72 RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (301)
Q Consensus        72 ~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~n  150 (301)
                      .+++++||++|+. ++..++++||+|++++..|.++...+...++..|+++++++.+|++++++++++++++|++++++|
T Consensus        81 ~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e~~~n  160 (433)
T PRK08134         81 GAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGN  160 (433)
T ss_pred             cEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCc
Confidence            9999999999996 566789999999999999998876665666789999999999999999999999999999999999


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcch------------
Q 022194          151 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE------------  218 (301)
Q Consensus       151 p~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~------------  218 (301)
                      |+|.+.|+++|+++||++|+++|+|++++.+....+...|+|+++.|.+|+++|++...+|+++....            
T Consensus       161 p~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~  240 (433)
T PRK08134        161 PGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPEL  240 (433)
T ss_pred             ccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccc
Confidence            99999999999999999999999999999998888888899999999999998877766777664211            


Q ss_pred             -------------------hH-HHHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEe
Q 022194          219 -------------------RL-AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN  278 (301)
Q Consensus       219 -------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~  278 (301)
                                         .+ .+.........+..+++..++.++++++.+..|.++..+++.++.++|+++|.|..|.
T Consensus       241 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~  320 (433)
T PRK08134        241 TEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVA  320 (433)
T ss_pred             cCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence                               00 0001112234567899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcchHHHHhhh-ccCCC
Q 022194          279 YAGLPEHPGHELHYSQV-LSDNG  300 (301)
Q Consensus       279 ~p~~~~~~~~~~~~~~~-~~~~~  300 (301)
                      +|++.++|+|.++++++ ++.||
T Consensus       321 yP~l~~~p~~~~~~~~~~~g~gg  343 (433)
T PRK08134        321 HPELESHPDHALAKRLLPRGAGS  343 (433)
T ss_pred             CCCCCCCccHHHHHHhCCCCCce
Confidence            99999999999999998 44554

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=100.00  E-value=3.4e-39  Score=286.10  Aligned_cols=288  Identities=41%  Similarity=0.661  Sum_probs=247.4

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL   83 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai   83 (301)
                      ..++.+...+..+...+|++.+.+|..+...        ....+.|+++++|..+++++.+++++|.+.+++++||++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~~~~~sG~~Ai   82 (380)
T TIGR01325         3 LAIRGGKERTEFREHAEALFLTSSFVYDSAAHAADRFAGEIPGFVYSRYANPTVAAFEERIAALEGAERAVATATGMSAI   82 (380)
T ss_pred             eeEECCCCCCCCCCccCCeeCCcceecCCHHHHHHhhccccCCcceecCCCchHHHHHHHHHHHhCCCcEEEECCHHHHH
Confidence            3444442234457788899999988654421        23457788999999999999999999999999999999998


Q ss_pred             H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHH
Q 022194           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (301)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~  162 (301)
                      . ++..++++||+|+++.+.|.+....+...++..|+++..++.+|++++++++++++++|++++|+||+|.+.|+++|.
T Consensus        83 ~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~  162 (380)
T TIGR01325        83 QAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALA  162 (380)
T ss_pred             HHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHH
Confidence            5 666788999999999999988776666777889999999999999999999988999999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHH
Q 022194          163 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (301)
Q Consensus       163 ~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (301)
                      ++||++|+++|+|++|+.+....+...|+|+++.|++|+++|++..++|++++++ .+.+.+.......+..+++..++.
T Consensus       163 ~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~-~~~~~l~~~~~~~g~~~~p~~a~~  241 (380)
T TIGR01325       163 ELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSE-ELMAEVAVYLRHTGPAMSPFNAWV  241 (380)
T ss_pred             HHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCH-HHHHHHHHHHHhhCCCCCHHHHHH
Confidence            9999999999999999887777777889999999999999776555678888765 455656655556777888999999


Q ss_pred             HHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       243 ~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ++++++.+..+.++..++++.+.++|+++|.|..|.+|+++++|+|.+++++.+++||
T Consensus       242 ~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~  299 (380)
T TIGR01325       242 LLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGT  299 (380)
T ss_pred             HHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCce
Confidence            9999999999999999999999999999999999999999999999999999987776

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=3.3e-39  Score=288.59  Aligned_cols=291  Identities=38%  Similarity=0.602  Sum_probs=246.8

Q ss_pred             cceeeecCCC-CCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchH
Q 022194           10 STLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM   80 (301)
Q Consensus        10 ~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~   80 (301)
                      +|..++.+.. .+..|...+|++.+.+|..+...        ....|.|++.++|..+++++.++++.|.+.+++++||+
T Consensus         4 ~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~g~~~~l~~ssG~   83 (425)
T PRK06084          4 ETLAIHAGYSPDPTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALAVASGM   83 (425)
T ss_pred             chhheeCCcCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccccCCccccCCCCchHHHHHHHHHHHhCCCceeEehhHH
Confidence            3555555411 33358899999999998765531        22357899999999999999999999999999999999


Q ss_pred             HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 022194           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (301)
Q Consensus        81 ~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~  159 (301)
                      +|+. ++.+++++||+|+++.+.|++....+...+...|+++.+++..|++++++++++++++|++++|+||+|.+.|++
T Consensus        84 ~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~  163 (425)
T PRK06084         84 AAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFCESIGNPAGNIIDIQ  163 (425)
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEEeCCCCCCCeecCHH
Confidence            9986 667789999999999999998776666666778899999998899999999998999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchh-HH-----------------
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LA-----------------  221 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~-~~-----------------  221 (301)
                      +|.++|+++|+++|+|++++.+....+...|+|+++.|++|+++|++...+|+++.++.. ..                 
T Consensus       164 ~I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (425)
T PRK06084        164 ALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYH  243 (425)
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccc
Confidence            999999999999999999998888888888999999999999998887778877754321 00                 


Q ss_pred             ---------------HHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCc
Q 022194          222 ---------------KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  286 (301)
Q Consensus       222 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~  286 (301)
                                     +.........+..+++..++.++++++.+..|.++..+++.++.++|+++|.|..|++|+++++|
T Consensus       244 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p  323 (425)
T PRK06084        244 GVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHP  323 (425)
T ss_pred             cchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcc
Confidence                           00112234567889999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHhhhcc-CCC
Q 022194          287 GHELHYSQVLS-DNG  300 (301)
Q Consensus       287 ~~~~~~~~~~~-~~~  300 (301)
                      +|.+++++..+ .||
T Consensus       324 ~~~~~~~~~~g~~gg  338 (425)
T PRK06084        324 EHELARRYMGGKPAS  338 (425)
T ss_pred             cHHHHHHhCCCCcce
Confidence            99999999877 454

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=4e-39  Score=287.85  Aligned_cols=292  Identities=38%  Similarity=0.565  Sum_probs=248.4

Q ss_pred             ccceeeecCCC-CCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecch
Q 022194            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (301)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG   79 (301)
                      ++|..++.+.. .+..|...+|++.+.+|..+...        ....+.|++.++|..+++++.++++.|.+.+++++||
T Consensus        14 ~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Ysr~~~p~~~~Le~~lA~l~g~~~av~~sSG   93 (436)
T PRK07812         14 FETKQIHAGQTPDPATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQRIAALEGGVAALLLASG   93 (436)
T ss_pred             cchhheeCCCCCCCCCCCccCCCcCCCCcccCCHHHHHHhhcCCcCCccccCCCCchHHHHHHHHHHHhCCCeEEEEccH
Confidence            44566666522 23368999999999998765421        2234678999999999999999999999999999999


Q ss_pred             HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEec-CCCHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                      ++|+. ++.+++++||+|+++...|.+....+...+...|+++..++ .+|++.+++++++++++|++++++||+|.+.|
T Consensus        94 ~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~D  173 (436)
T PRK07812         94 QAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETISNPQIDVLD  173 (436)
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEEEECCCCCCCeecC
Confidence            99985 77788999999999999998887666666778899999996 56899999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcch-------------------
Q 022194          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-------------------  218 (301)
Q Consensus       158 l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~-------------------  218 (301)
                      +++|+++||++|+++|+|++++.+....+...|+|+++.|++|+++|+++..+|.++.+..                   
T Consensus       174 l~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~  253 (436)
T PRK07812        174 IPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYH  253 (436)
T ss_pred             HHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccc
Confidence            9999999999999999999999888888888899999999999998888877887775321                   


Q ss_pred             ----------h-HHHHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcc
Q 022194          219 ----------R-LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  287 (301)
Q Consensus       219 ----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~  287 (301)
                                . +.+.........|..+++..++.++++++.+..|.++..+++..+.++|+++|.|..|++|+++++|.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~  333 (436)
T PRK07812        254 GVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPW  333 (436)
T ss_pred             cchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCcc
Confidence                      0 01112234445688999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhh-ccCCC
Q 022194          288 HELHYSQV-LSDNG  300 (301)
Q Consensus       288 ~~~~~~~~-~~~~~  300 (301)
                      |.+++++. ++.||
T Consensus       334 ~~~~~~~~~~g~gg  347 (436)
T PRK07812        334 YERAKRLAPKGTGA  347 (436)
T ss_pred             HHHHHHhCcCCCce
Confidence            99999998 44554

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-39  Score=270.03  Aligned_cols=294  Identities=40%  Similarity=0.622  Sum_probs=262.5

Q ss_pred             CCCccceeeecCCCCCC-CCccccCeeecceeecCCC--------CCCCCccccCCCCchHHHHHHHHHhhcCCCceEEe
Q 022194            6 EPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (301)
Q Consensus         6 ~~~~~~~~~~~~~~~~~-~g~~~~p~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~   76 (301)
                      +.+.+|..++-+ .+|. -|....|++.++.|.....        .+..++-|+|.++|+.+.++++++.+-|.-.++.+
T Consensus         5 ~~~f~T~~vHag-~~d~~t~ara~PIyqtTsy~F~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~   83 (426)
T COG2873           5 NWGFETLAVHAG-QEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAV   83 (426)
T ss_pred             ccCcchhhhcCC-CCCCCCCceecceeeeeeeecCCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhh
Confidence            467788899988 4465 8999999999999887553        35568889999999999999999999988889999


Q ss_pred             cchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccc
Q 022194           77 TSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        77 ~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~  155 (301)
                      .||++|+ .++..++++||+|+.+.-.|++....+...++..|+++++++.+|++.+++++++++|+|+++...||.+.+
T Consensus        84 aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v  163 (426)
T COG2873          84 ASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDV  163 (426)
T ss_pred             ccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccc
Confidence            9999998 599999999999999999999999888888999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhH---------------
Q 022194          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL---------------  220 (301)
Q Consensus       156 ~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~---------------  220 (301)
                      .|++.|+++||++|+++|+|.+++.+.+..|.+.|+|+++.|.+|+++|.+-.++|+++-....-               
T Consensus       164 ~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p  243 (426)
T COG2873         164 LDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDP  243 (426)
T ss_pred             cCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCc
Confidence            99999999999999999999999999999999999999999999999998877788887542110               


Q ss_pred             -------H----------HHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCC
Q 022194          221 -------A----------KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  283 (301)
Q Consensus       221 -------~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~  283 (301)
                             .          +.......-.|..++|..++.++++++.+..|.+++++|+..+.++|++||.|.+|+||||+
T Consensus       244 ~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~  323 (426)
T COG2873         244 SYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLA  323 (426)
T ss_pred             cccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCC
Confidence                   0          11112334467889999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHhhhccCCC
Q 022194          284 EHPGHELHYSQVLSDNG  300 (301)
Q Consensus       284 ~~~~~~~~~~~~~~~~~  300 (301)
                      ++|.|.++++++.++.|
T Consensus       324 ~~~~h~la~kyl~~g~g  340 (426)
T COG2873         324 SHPYHALAKKYLPKGAG  340 (426)
T ss_pred             CCcchhHHHhhccCCCc
Confidence            99999999999766654

>PRK06767 methionine gamma-lyase; Provisional

Probab=100.00  E-value=1.2e-38  Score=283.05  Aligned_cols=290  Identities=38%  Similarity=0.625  Sum_probs=248.6

Q ss_pred             CCCCccceeeecCCC-CCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEE
Q 022194            5 EEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (301)
Q Consensus         5 ~~~~~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~   75 (301)
                      +....+|..++.+.. .++.|...+|++.+.+|..+...        ....+.|+++++|..++|++.+++++|.+++++
T Consensus         2 ~~~~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al~   81 (386)
T PRK06767          2 KKKHMETALIHHGYTSEEHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEALA   81 (386)
T ss_pred             CCCCcccceeeCCCCCCCCCCCccCCccCccceecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEEE
Confidence            344566778887633 23468999999999999765521        224577999999999999999999999999999


Q ss_pred             ecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccc
Q 022194           76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (301)
Q Consensus        76 ~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~  154 (301)
                      ++||++|+. ++..++++||+|+++++.|......+....+..|+++..++..|++++++++++++++|++++|+||+|.
T Consensus        82 ~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~lesp~NptG~  161 (386)
T PRK06767         82 FGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTMK  161 (386)
T ss_pred             ECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEeCCCCCCce
Confidence            999998885 6667899999999999999888776666677788999888888999999999989999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCC
Q 022194          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (301)
Q Consensus       155 ~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  234 (301)
                      +.|+++|.++|+++|+++|+|++|+.+....+...|+|+++.|++|+++|+++.++|+++++++.+.+..+......+..
T Consensus       162 v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~  241 (386)
T PRK06767        162 LIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGI  241 (386)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999988877777788999999999999988776667999988765555445555666777


Q ss_pred             CCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++..+++.+.+++.+..+.++..++++++.++|+++|.|..+.+|      ++.+++++.++.||
T Consensus       242 ~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~~~gg  301 (386)
T PRK06767        242 MAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMKRGGG  301 (386)
T ss_pred             CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCCCCCc
Confidence            8899899999999999999999999999999999999999999998      68888888887776

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.2e-38  Score=285.56  Aligned_cols=294  Identities=38%  Similarity=0.580  Sum_probs=249.0

Q ss_pred             CCccceeeecCCC-CCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEec
Q 022194            7 PGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (301)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~   77 (301)
                      +.+++..++.+.. .++.|...+|++.+.+|..+...        ....+.|++.++|...++++.++++.|.+.+++++
T Consensus         6 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~al~~~   85 (427)
T PRK05994          6 PGFATLAVHAGAQPDPTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTNAVLEERVAALEGGTAALAVA   85 (427)
T ss_pred             CCcchhheECCcCCCCCCCCccCCCcCCCCcccCCHHHHHHhhccccCCcceECCCCccHHHHHHHHHHHhCCCcEEEEc
Confidence            3455777776622 33458889999999998654421        12346788988999999999999999999999999


Q ss_pred             chHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        78 sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                      ||++|+. ++.+++++||+|+++.+.|++....+...+...|+++++++..|++++++++++++++|++++|+||+|.+.
T Consensus        86 SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~vesp~NptG~v~  165 (427)
T PRK05994         86 SGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTVT  165 (427)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeec
Confidence            9999985 666789999999999999998876666667889999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcch-h----------------
Q 022194          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-R----------------  219 (301)
Q Consensus       157 ~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~-~----------------  219 (301)
                      |+++|+++|+++|+++|+|++++.+....+...|+|+++.|++|+++|+.+..+|+++.... .                
T Consensus       166 dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~  245 (427)
T PRK05994        166 DIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPE  245 (427)
T ss_pred             CHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcch
Confidence            99999999999999999999999888888888999999999999999888887888774221 0                


Q ss_pred             -----HHH----------HHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCC
Q 022194          220 -----LAK----------ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  284 (301)
Q Consensus       220 -----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~  284 (301)
                           +.+          .........|..+++..++.++++++.+..|.++..+++..+.++|+++|.|..|++|+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~  325 (427)
T PRK05994        246 YHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPD  325 (427)
T ss_pred             hhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCC
Confidence                 111          01112334577899999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHhhh-ccCCC
Q 022194          285 HPGHELHYSQV-LSDNG  300 (301)
Q Consensus       285 ~~~~~~~~~~~-~~~~~  300 (301)
                      +|.|.+++++. +++||
T Consensus       326 ~~~~~~~~~~~~~g~g~  342 (427)
T PRK05994        326 DPYHALAQKYSPKGAGA  342 (427)
T ss_pred             CccHHHHHHhcCCCceE
Confidence            99999999996 44454

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.4e-38  Score=284.41  Aligned_cols=292  Identities=36%  Similarity=0.522  Sum_probs=247.7

Q ss_pred             ccceeeecCCC-CCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecch
Q 022194            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (301)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG   79 (301)
                      ++|..++.+.. .++.|...+|++.+++|..+...        ....+.|++.++|..+++++.++++.|.+..++++||
T Consensus        14 ~~t~~~~~~~~~~~~~~~~~~Pi~~sstf~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~le~~la~l~g~~~~v~fsSG   93 (437)
T PRK05613         14 FETRSIHAGQSVDSDTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPIYSRLTNPTVEALENRIASLEGGVHAVAFASG   93 (437)
T ss_pred             cchHheeCCCCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccccCCceeeCccChHHHHHHHHHHHHhCCCeEEEeCCH
Confidence            44666666522 23468999999999999765521        2335779999999999999999999999999999999


Q ss_pred             HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEec-CCCHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                      ++|+. ++..++++||+|++++..|+++...+...++..|+++.+++ ..|++.+++++++++++|+++++.||+|.+.|
T Consensus        94 ~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~d  173 (437)
T PRK05613         94 QAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQADVLD  173 (437)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCCCCCCcccC
Confidence            98885 66778899999999999999986666667788999999997 55899999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchh------------------
Q 022194          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER------------------  219 (301)
Q Consensus       158 l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~------------------  219 (301)
                      +++|+++||++|+++|+|.+++.+....+...|+|+++.|++|+++|++...+|+++.+.+.                  
T Consensus       174 i~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~  253 (437)
T PRK05613        174 IPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTP  253 (437)
T ss_pred             HHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCC
Confidence            99999999999999999999998887888888999999999999987766668888754220                  


Q ss_pred             -----------------HHHHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCC
Q 022194          220 -----------------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  282 (301)
Q Consensus       220 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~  282 (301)
                                       ..+.........|..+++..+|.++++++.+..|.++..+++..+.++|+++|.|..|.+|++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl  333 (437)
T PRK05613        254 DPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGL  333 (437)
T ss_pred             ccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEECCCC
Confidence                             001122344567889999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHhhh-ccCCC
Q 022194          283 PEHPGHELHYSQV-LSDNG  300 (301)
Q Consensus       283 ~~~~~~~~~~~~~-~~~~~  300 (301)
                      +++|+|++++++. ++.||
T Consensus       334 ~~~p~~~~~~~~~~~g~gg  352 (437)
T PRK05613        334 KDSPWYATKEKLGLKYTGS  352 (437)
T ss_pred             CCCccHHHHHHhcCCCCce
Confidence            9999999999996 44454

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=5.5e-38  Score=277.20  Aligned_cols=275  Identities=44%  Similarity=0.747  Sum_probs=241.9

Q ss_pred             CccceeeecCCC-CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHH
Q 022194            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV   86 (301)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~   86 (301)
                      ..+|..++.+.. .+..|...+|++.+++|..+...+...|.|+++++|.+++|++.++++.|.+..++++||++|+.++
T Consensus         4 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~   83 (366)
T PRK08247          4 TIETKLAQIGNRSDERTGTVNPPVYFSTAYRHEGIGESTGFDYSRTGNPTRGVLEQAIADLEGGDQGFACSSGMAAIQLV   83 (366)
T ss_pred             CcchhheeCCCCCCCCCCCccCCcccCcccccCCCCCcCCccccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHH
Confidence            455666776522 2346899999999999977654334568899999999999999999999999899999999999877


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~  166 (301)
                      +.++++||+|++++|.|++....+...++..|++++.++..|++.+++++++++++|++++|+||+|...++++|+++|+
T Consensus        84 ~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~  163 (366)
T PRK08247         84 MSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAK  163 (366)
T ss_pred             HHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence            78889999999999999998777767778899999999999999999999989999999999999999999999999999


Q ss_pred             HcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcc
Q 022194          167 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (301)
Q Consensus       167 ~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (301)
                      ++|+++|+|++|..+....+...++|+++.|++|+++|++++++|+++.+++.+.+.+...+...+..+++..++.+.++
T Consensus       164 ~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~  243 (366)
T PRK08247        164 KHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRG  243 (366)
T ss_pred             HcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhc
Confidence            99999999999988877777777899999999999998888889999987667777777777777777888899999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCC
Q 022194          247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  282 (301)
Q Consensus       247 l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~  282 (301)
                      ++.+..+.+++.+++..+.++|+++|++..+.+|+.
T Consensus       244 l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~  279 (366)
T PRK08247        244 MKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGR  279 (366)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCc
Confidence            999999999999999999999999999988888854

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=100.00  E-value=9.2e-38  Score=279.86  Aligned_cols=290  Identities=39%  Similarity=0.609  Sum_probs=241.8

Q ss_pred             cceeeecCCC-CCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchH
Q 022194           10 STLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM   80 (301)
Q Consensus        10 ~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~   80 (301)
                      +|..++.+.. ....|...+|++.+.+|..+...        ....+.|+++++|..+++++.+++++|.+.+++++||+
T Consensus         3 ~t~~~~~~~~~~~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~ysr~~~p~~~~le~~lA~l~g~~~~v~~~sG~   82 (418)
T TIGR01326         3 ETLQLHAGQEPDPTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLEQRIAALEGGVAALAVASGQ   82 (418)
T ss_pred             cceeEECCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhccCcCCceeECCCChhHHHHHHHHHHHhCCCeEEEEccHH
Confidence            4556665522 23358899999999998765421        12346789999999999999999999999999999999


Q ss_pred             HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 022194           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (301)
Q Consensus        81 ~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~  159 (301)
                      +|+. ++..++++||+|+++++.|++....+...++..|++++.++.+|++++++++++++++|++++|+||+|.+.|++
T Consensus        83 ~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~  162 (418)
T TIGR01326        83 AAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIE  162 (418)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCHH
Confidence            9985 666789999999999999998877776777889999999998899999999998999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhH-------------------
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-------------------  220 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~-------------------  220 (301)
                      +|+++|+++|+++|+|++|+.+....+...++|+++.|++|+++|++ .+.|+++.+++.+                   
T Consensus       163 ~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G-~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~a  241 (418)
T TIGR01326       163 AIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHG-TAIGGVIVDGGKFDWANGRFPLFTTPDPSYHG  241 (418)
T ss_pred             HHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCc-cceEEEEEecccccccccccccccCCCCcccc
Confidence            99999999999999999998877667777789999999999996654 4556555543211                   


Q ss_pred             -------------HHHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcc
Q 022194          221 -------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  287 (301)
Q Consensus       221 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~  287 (301)
                                   .+.........|..+++..++.++.+++.+..|.++..+++..+.++|.++|.|..|.+|+++++|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~~~  321 (418)
T TIGR01326       242 LVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASHPH  321 (418)
T ss_pred             chhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCcc
Confidence                         0111122334577788999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhh-ccCCC
Q 022194          288 HELHYSQV-LSDNG  300 (301)
Q Consensus       288 ~~~~~~~~-~~~~~  300 (301)
                      |++++++. +++||
T Consensus       322 ~~~~~~~~~~g~g~  335 (418)
T TIGR01326       322 HALAKKYLPKGFGA  335 (418)
T ss_pred             HHHHHHhccCCCcc
Confidence            99999998 55555

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=2.1e-37  Score=272.13  Aligned_cols=274  Identities=40%  Similarity=0.657  Sum_probs=236.3

Q ss_pred             CccceeeecCCC-CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHH
Q 022194            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV   86 (301)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~   86 (301)
                      ..+|..++.+.. .+..|...+|++.+.+|..+..-....|.|+++++|..+++++.++++.+.+.+++++||++|+.++
T Consensus         6 ~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~Y~R~~~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~   85 (364)
T PRK07269          6 HINTILAQAGIKSDEATGALVTPLHFSTTYQHPEFGQSTGFDYTRTKNPTRAKLEETLAAIESADYALATSSGMSAIVLA   85 (364)
T ss_pred             CcccceeeCCCCCCCCCCCccCCccCCcceecCCCCCcCCcceeCCCCccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHH
Confidence            345666766522 2336889999999999977664334568899999999999999999999999999999999999766


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~  166 (301)
                      +.++++||+|+++.+.|++....+.......++++.+.  .|++++++++++++++|++++|+||+|.+.++++|+++|+
T Consensus        86 l~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~  163 (364)
T PRK07269         86 FSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYA--NTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAH  163 (364)
T ss_pred             HHHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEec--CCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHH
Confidence            67789999999999999988765544444445554443  4799999999999999999999999999999999999999


Q ss_pred             HcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcc
Q 022194          167 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (301)
Q Consensus       167 ~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (301)
                      ++|+++++|++|..+....+...|+|+++.|++|+++|++++.+|+++++++.+.++++......|..+++..++.++.+
T Consensus       164 ~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~  243 (364)
T PRK07269        164 AKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRG  243 (364)
T ss_pred             HcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcC
Confidence            99999999999988877788888999999999999998888789999988777878777666666788999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCC
Q 022194          247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  283 (301)
Q Consensus       247 l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~  283 (301)
                      ++.+..+.++..+++..+.++|+++|.|..|.+|++.
T Consensus       244 L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~g  280 (364)
T PRK07269        244 LKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKG  280 (364)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcC
Confidence            9999999999999999999999999999999999874

>PLN02242 methionine gamma-lyase

Probab=100.00  E-value=3.6e-37  Score=274.95  Aligned_cols=282  Identities=32%  Similarity=0.488  Sum_probs=234.5

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCC--------CC----CCccccCCCCchHHHHHHHHHhhcCCCceEEecc
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------EN----GPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~--------~~----~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~s   78 (301)
                      +..++.+-..+..+...+|++.+.+|..+...        ..    ..+.|++.++|..++|++.+++++|.+.+++++|
T Consensus        20 ~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~~l~~~s   99 (418)
T PLN02242         20 AALASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTAS   99 (418)
T ss_pred             HHHhcCCCCCCCCCCccCCcccCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCeEEEEcc
Confidence            45666663334457779999999998765421        10    2367999999999999999999999999999999


Q ss_pred             hHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhc-ccCCcEEEEecCCCHHHHHhhcCC-CceEEEEeCCCCCcccc
Q 022194           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVT-PKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQI  155 (301)
Q Consensus        79 G~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~-~~~g~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~~~np~G~~  155 (301)
                      |++|+. ++.+++++||+|+++++.|+++...+.... +..|++++.++..|++++++++++ ++++|++++|+||||.+
T Consensus       100 G~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~NPtG~v  179 (418)
T PLN02242        100 GMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTV  179 (418)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCCCCCcc
Confidence            999985 677889999999999999988875544333 448999999998899999999987 59999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh----hc
Q 022194          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN----AE  231 (301)
Q Consensus       156 ~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~----~~  231 (301)
                      .++++|+++|+++|+++|+|++|+... ..+...++|+++.|+||++++++..++|++++++ .+.+.+.....    ..
T Consensus       180 ~dl~~I~~la~~~gi~livDea~~~~~-~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~-~li~~l~~~~~~~~~~~  257 (418)
T PLN02242        180 ADIPELARIAHEKGVTVVVDNTFAPMV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-ELVNSMMDLHHGALMLL  257 (418)
T ss_pred             cCHHHHHHHHHHhCCEEEEECCCCccC-CCHHHcCCcEEEEeCccccCCCCCceEEEEEcCH-HHHHHHHHHhhhhhhcc
Confidence            999999999999999999999997443 3556668999999999999777666689998765 45555554422    35


Q ss_pred             CCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhc
Q 022194          232 GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVL  296 (301)
Q Consensus       232 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~  296 (301)
                      +..+.+..++.....++.+..+++++.+++.++.++|++++  ..+.+|+++++|+|.+++++.+
T Consensus       258 g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~--~~V~yP~l~~~p~~~~~~~~~~  320 (418)
T PLN02242        258 GPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG--LKVIYPGLEDHPQHALLKSMAN  320 (418)
T ss_pred             CCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC--CEEECCCCCCCccHHHHHHhcc
Confidence            56678888888889999999999999999999999999985  4799999999999999999984

>PRK06434 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=8.5e-36  Score=262.33  Aligned_cols=283  Identities=34%  Similarity=0.582  Sum_probs=243.1

Q ss_pred             CccceeeecCCC-CCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecc
Q 022194            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (301)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~s   78 (301)
                      +++|..++.+.. .+..|...+|++.+.+|..+...        ....|.|++.++|..+++++.++++.|.+.+++++|
T Consensus         8 ~~~t~~~~~~~~~~~~~~~~~~pI~~ss~~~~~~~~~~~~~~~~~~~~~~Y~r~~~P~~~~lE~~la~leg~~~av~~sS   87 (384)
T PRK06434          8 GFNTRAVQSGELRDPRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAEHALSFSS   87 (384)
T ss_pred             CcccceeECCCCCCCCCCCccCCeeCCcceecCChHHhhhccccccCCcceeCCCChhHHHHHHHHHHHhCCCcEEEeCC
Confidence            345666765522 23468899999999998764431        123578999999999999999999999999999999


Q ss_pred             hHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC-CCceEEEEeCCCCCccccc
Q 022194           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        79 G~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~-~~~~~v~i~~~~np~G~~~  156 (301)
                      |+.|+. ++.+++++||+|+++.+.|.+....+...+...|+++++++.++.+.++  ++ +++++|+++++.||++.+.
T Consensus        88 G~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~~v~  165 (384)
T PRK06434         88 GMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVP  165 (384)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCceee
Confidence            999986 6777899999999999999888877777888999999999987665554  44 3789999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCC
Q 022194          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (301)
Q Consensus       157 ~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
                      |+++|+++||+++  +++|.+++.+..+.+...|+|+++.|.+|+++|++++.+|+++++++.+.+++.......+..++
T Consensus       166 Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~  243 (384)
T PRK06434        166 DIKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPD  243 (384)
T ss_pred             cHHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCC
Confidence            9999999999998  46799998888888888999999999999999888778999988877777777766666788889


Q ss_pred             HHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +..++..+++++.+..+.++..++++.+.++|+.+|.|..|+||+++      +++++++++||
T Consensus       244 ~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~g~g~  301 (384)
T PRK06434        244 PIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLRGFGG  301 (384)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcCCCCc
Confidence            99999999999999999999999999999999999999999999995      78888877666

>PRK05968 hypothetical protein; Provisional

Probab=100.00  E-value=5.7e-35  Score=259.51  Aligned_cols=265  Identities=38%  Similarity=0.611  Sum_probs=230.5

Q ss_pred             CCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccC
Q 022194           21 DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLG   91 (301)
Q Consensus        21 ~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~   91 (301)
                      +-.|...+|++.+.+|..+...        ....+.|++.++|..+++++.+++++|.+..++++||+.|+. ++..+++
T Consensus        21 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~~  100 (389)
T PRK05968         21 NAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVE  100 (389)
T ss_pred             cCCCCccCCccCCcceecCCHHHHHHhhcCCCCCccccCCCChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC
Confidence            3468899999999999765521        223467889889999999999999999999999999998885 6677899


Q ss_pred             CCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCE
Q 022194           92 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGAL  171 (301)
Q Consensus        92 ~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~  171 (301)
                      +||+|+++.+.|++....+...+...|++++.++..|++++++++ +++++|++++|+|+++...++++|+++|+++|++
T Consensus       101 ~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~  179 (389)
T PRK05968        101 PGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVV  179 (389)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCE
Confidence            999999999999988777767788899999999999999999988 5789999999999999999999999999999999


Q ss_pred             EEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh-hhcCCCCCHHhHHHHHcccccH
Q 022194          172 LLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTM  250 (301)
Q Consensus       172 li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~  250 (301)
                      +|+|++|+.+....+...|+|+++.|++|+++|++++++|+++.++ .+.+++.... ...+..+++..++..+.+++.+
T Consensus       180 vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~-~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl  258 (389)
T PRK05968        180 TMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSK-EHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL  258 (389)
T ss_pred             EEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECH-HHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH
Confidence            9999999888766777789999999999999888877889888665 4545444332 2456678899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcc
Q 022194          251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  287 (301)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~  287 (301)
                      ..+.++..++++++.++|+++|.|..+.+|+++++|.
T Consensus       259 ~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~  295 (389)
T PRK05968        259 PLRMKAHEASALEIARRLKAHPVVERVCHPALANHPP  295 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChH
Confidence            9999999999999999999999999999999998874

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=8.1e-29  Score=219.44  Aligned_cols=246  Identities=23%  Similarity=0.277  Sum_probs=185.8

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCCC----ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKAD----RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~~----~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      .|.+. |.+. |+++.+++.+.++.+    +.+++|+| ++|+. ++.++++|||+|++++|.|..|.    ......|.
T Consensus        60 ~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~----~~~~~~gg  135 (393)
T COG0436          60 HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYE----AAVKLAGG  135 (393)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHH----HHHHhcCC
Confidence            44454 8887 999999999998732    43555555 69985 88889999999999999999997    66778888


Q ss_pred             EEEEecCC--------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC---
Q 022194          120 VVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---  185 (301)
Q Consensus       120 ~~~~~~~~--------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~---  185 (301)
                      +++.++..        |++++++++.+++++|++++||||||.+.+   +++|+++|++||+++|.||+|....+..   
T Consensus       136 ~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~  215 (393)
T COG0436         136 KPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEH  215 (393)
T ss_pred             EEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCc
Confidence            88888841        689999999999999999999999999975   8899999999999999999997655432   


Q ss_pred             --ccC----CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc------cHHHH
Q 022194          186 --PLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK------TMALR  253 (301)
Q Consensus       186 --~~~----~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~  253 (301)
                        ..+    ....+.++||||.+ +.+|+|.||++++++.+.+.+.........+.+...+.++..+++      .+...
T Consensus       216 ~s~~~~~~~~~~~i~i~s~SK~~-~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~  294 (393)
T COG0436         216 PSILELAGARDRTITINSFSKTY-GMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEM  294 (393)
T ss_pred             CCHhhcCCCcceEEEEecccccc-cccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHH
Confidence              111    24579999999999 678999999999877777777656665555555555555444433      23455


Q ss_pred             HHHHHHHHHHHHHHHHhCCCcceEecC--------CCCC-CcchHHHHhhhccC
Q 022194          254 VEKQQDNAQKIAEFLASHPRVKKVNYA--------GLPE-HPGHELHYSQVLSD  298 (301)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~v~~v~~p--------~~~~-~~~~~~~~~~~~~~  298 (301)
                      ++.+.++++.+.+.|.+.+++..+..|        .++. ..+..|++......
T Consensus       295 ~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~  348 (393)
T COG0436         295 REEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSEEFAKKLLEEA  348 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCCCCHHHHHHHHHHhC
Confidence            577889999999999987655433323        2222 34566766665544

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.96  E-value=3.5e-27  Score=200.17  Aligned_cols=221  Identities=22%  Similarity=0.226  Sum_probs=169.9

Q ss_pred             CCccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhccc
Q 022194           45 GPYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (301)
Q Consensus        45 ~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~  116 (301)
                      ...+|++. |.|. ++.|++.+++++|.    ++.+++|.|. +++. +++.++++||+|++.+|.|..|.    .....
T Consensus        61 ~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~----~~~~m  136 (420)
T KOG0257|consen   61 STNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYI----PQVVM  136 (420)
T ss_pred             hhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhh----hHHhh
Confidence            34567776 8887 99999999997754    4667777775 8885 99999999999999999999997    44455


Q ss_pred             CCcEEEEecCC-------------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 022194          117 TGVVVKRVNTC-------------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (301)
Q Consensus       117 ~g~~~~~~~~~-------------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~  180 (301)
                      .|...+.++..             |.++++.++.+++++|++++||||||.+.+   |++|+++|++||+++|.||+|-.
T Consensus       137 aG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~  216 (420)
T KOG0257|consen  137 AGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEW  216 (420)
T ss_pred             cCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHH
Confidence            56666655542             899999999999999999999999999974   89999999999999999999853


Q ss_pred             ccc---------cCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHH---H-Hccc
Q 022194          181 PVL---------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI---C-LRGV  247 (301)
Q Consensus       181 ~~~---------~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~l  247 (301)
                      .++         ..|..++..+.++|++|+| |..|.|.||+++ ++.+....+..........+...+.+   + ...+
T Consensus       217 ~v~d~~~h~r~aslPgm~ertitvgS~gKtf-~~TGWrlGW~ig-p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~  294 (420)
T KOG0257|consen  217 LVYDGNKHIRIASLPGMYERTITVGSFGKTF-GVTGWRLGWAIG-PKHLYSALFPVHQNFVFTCPTPIQEASAAAFALEL  294 (420)
T ss_pred             HhhCCCcceeeecCCchhheEEEecccccee-eeeeeeeeeeec-hHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhh
Confidence            322         2355667899999999999 678999999999 56777766666654443332222111   1 1111


Q ss_pred             --------ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          248 --------KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       248 --------~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                              ....++.+.+.++++.+.+.|.+.
T Consensus       295 ~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l  326 (420)
T KOG0257|consen  295 ACLQPGGSYFITELVKEYKEKRDILAKALEEL  326 (420)
T ss_pred             hccCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    123457788999999999999886

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.95  E-value=3.4e-26  Score=205.12  Aligned_cols=222  Identities=21%  Similarity=0.208  Sum_probs=164.7

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC----ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD----RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~----~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|++. |.+. ++++.+++++.+|.+    +.+++++| ++++. ++..++++||+|++++|.|+.+.    ..++..|
T Consensus        72 ~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~----~~~~~~g  147 (405)
T PRK06207         72 QAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANR----KLVEFFE  147 (405)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHHcC
Confidence            457655 6766 889999999887742    45666666 58885 66678899999999999999886    5666778


Q ss_pred             cEEEEecCC----------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC
Q 022194          119 VVVKRVNTC----------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR  185 (301)
Q Consensus       119 ~~~~~~~~~----------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~  185 (301)
                      .+++.++.+          |++++++++++++++|++++|+||||.+.+   +++|+++|+++|++||+||+|....+..
T Consensus       148 ~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~  227 (405)
T PRK06207        148 GEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDG  227 (405)
T ss_pred             CEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Confidence            888777642          788999999888999999999999999986   7789999999999999999998643311


Q ss_pred             -----c----cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc----cHHH
Q 022194          186 -----P----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMAL  252 (301)
Q Consensus       186 -----~----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~  252 (301)
                           .    ......+++.||||.+ +.+|+|.||+++++ .+.+.+...........+...+.++...++    .+.+
T Consensus       228 ~~~~~~~~~~~~~~~vi~i~SfSK~~-~lpGlRiG~ii~~~-~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~  305 (405)
T PRK06207        228 TSYTHLRALPIDPENVITIMGPSKTE-SLSGYRLGVAFGSP-AIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKD  305 (405)
T ss_pred             CCCCchhcCCCCcCcEEEEecchhhc-cCcccceEEEEcCH-HHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHH
Confidence                 1    1234569999999999 55689999999764 566666555544444444444444433332    3566


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCc
Q 022194          253 RVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      .++++.++++.+.+.|++++++
T Consensus       306 ~~~~~~~~r~~l~~~L~~~~~~  327 (405)
T PRK06207        306 RIARHQAIRDDLLRVLRGVEGV  327 (405)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCc
Confidence            6677777778888888776544

>PRK07179 hypothetical protein; Provisional

Probab=99.95  E-value=2.7e-26  Score=206.22  Aligned_cols=255  Identities=17%  Similarity=0.117  Sum_probs=184.7

Q ss_pred             CCccceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC--CCchHHHHHHHHHhhcCCCceEEecchHHHHH
Q 022194            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (301)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~   84 (301)
                      +++...+++|+ +|||+|+..+|.+.......-+.........+.+  +.+...++++.+++++|.++++++++|++|+.
T Consensus        50 ~~~g~~~~~~~-~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~  128 (407)
T PRK07179         50 KTPGPDAIILQ-SNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANV  128 (407)
T ss_pred             cCCCCcEEEee-cCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHH
Confidence            45556789999 8999999999998876533321111111111122  44568999999999999998999999999885


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHH
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIA  162 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~  162 (301)
                       ++..+..+||.|++..+.|.+...    .+...|+++..++..|++++++++++ ++++|++++++||+|.+.|+++|.
T Consensus       129 ~~l~~l~~~g~~v~~~~~~h~s~~~----~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~  204 (407)
T PRK07179        129 GLLQTIADPNTPVYIDFFAHMSLWE----GVRAAGAQAHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIV  204 (407)
T ss_pred             HHHHHhCCCCCEEEEECCcCHHHHH----HHHHCCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHH
Confidence             667788899999998888877753    33456778888877899999999875 578999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCccccC-------c--cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh--hc
Q 022194          163 EMAHAHGALLLVDNSIMSPVLSR-------P--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AE  231 (301)
Q Consensus       163 ~l~~~~~~~li~D~~~~~~~~~~-------~--~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~--~~  231 (301)
                      ++|+++|+++|+||+|+.+..+.       .  ...++|+++.|+||++++    ++|++++++ .+.+.+.....  ..
T Consensus       205 ~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~----~~G~l~~~~-~~~~~~~~~~~~~~~  279 (407)
T PRK07179        205 DIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG----RAGIITCPR-ELAEYVPFVSYPAIF  279 (407)
T ss_pred             HHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc----cCeEEEeCH-HHHHHHHHhCcCeee
Confidence            99999999999999998654321       1  112458999999999953    368888774 45444433221  23


Q ss_pred             CCCCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          232 GSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       232 ~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.+..+...+++...++   ...++++++.++.+++.+.|+++
T Consensus       280 ~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~  322 (407)
T PRK07179        280 SSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL  322 (407)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            34444444433333333   33456788888899999999875

>PLN02187 rooty/superroot1

Probab=99.95  E-value=9.9e-26  Score=204.61  Aligned_cols=224  Identities=16%  Similarity=0.176  Sum_probs=159.1

Q ss_pred             CccccCC-CCch-HHHHHHHHHhhcCC--C-ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           46 PYDYTRS-GNPT-RDALESLLAKLDKA--D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~~~--~-~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      .+.|.+. |.+. ++++.+++.+.++.  + +.+++++| ++++. ++..+++|||+|++++|.|+.+.    ..+...|
T Consensus       101 ~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~----~~~~~~g  176 (462)
T PLN02187        101 GNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYD----ARAAYSG  176 (462)
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHH----HHHHHcC
Confidence            3456554 6554 66677777655432  2 44555555 68986 56667899999999999999985    5566788


Q ss_pred             cEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC---
Q 022194          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---  185 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~---  185 (301)
                      .+++.++..       |+++++++++++++++++++|+||||.+.+   +++|+++|+++|++||+||+|....+..   
T Consensus       177 ~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~  256 (462)
T PLN02187        177 LEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPF  256 (462)
T ss_pred             CEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc
Confidence            888887651       789999999888999999999999999986   8889999999999999999998644321   


Q ss_pred             -c----cCCCCcEEEecccccccCCCCceeeEEEEcc-hhH---HHHHHHhhhhcCC--CCCHHhHHHHHccc-----cc
Q 022194          186 -P----LELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERL---AKELYFLQNAEGS--GLAPFDCWICLRGV-----KT  249 (301)
Q Consensus       186 -~----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~-~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~l-----~~  249 (301)
                       +    ......++++||||.| +.+|+|.||+++.+ +.+   .+.+.........  ..+...+.++...+     +.
T Consensus       257 ~s~~~~~~~~~vi~l~SfSK~f-~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~  335 (462)
T PLN02187        257 VSMGKFASIVPVLTLAGISKGW-VVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNF  335 (462)
T ss_pred             eeHHHhccCCcEEEEecchhhc-CCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHH
Confidence             1    1112479999999999 56799999999853 322   2333333333322  22344444443333     23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          250 MALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       250 ~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      +.+.++.+.++++.+.+.|++++.+
T Consensus       336 l~~~~~~l~~~r~~l~~~L~~~~~~  360 (462)
T PLN02187        336 FAKKNKILKHNVDLVCDRLKDIPCV  360 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            5666778888888899999887543

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.95  E-value=7.3e-26  Score=202.89  Aligned_cols=251  Identities=13%  Similarity=0.160  Sum_probs=174.1

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCch-HHHHHHHHHhhcCC----CceEEecch-HHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPT-RDALESLLAKLDKA----DRALCFTSG-MAALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~-~~~l~~~l~~~~~~----~~~i~~~sG-~~ai~   84 (301)
                      ..+++|+.+..+++.  ++.+.... .. .......+.|...|.+. ++++.+++.+.+|.    ++.+++++| ++++.
T Consensus        32 ~~~i~l~~g~p~~~~--~~~~~~~~-~~-~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~  107 (399)
T PRK07681         32 HKMIDLSIGNPDMPP--ADFVREEM-VH-TANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLV  107 (399)
T ss_pred             CCeEEeCCCCCCCCC--CHHHHHHH-HH-HHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHH
Confidence            367888844434432  23222221 11 01111335555446655 77788888766543    245666666 58886


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                       ++..++++||+|++++|.|+.+.    ..++..|++++.++.+       |++++++++.+++++|++++|+||||.+.
T Consensus       108 ~~~~~~~~~Gd~Vlv~~P~y~~~~----~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~  183 (399)
T PRK07681        108 HLPMVYANPGDIILVPDPGYTAYE----TGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMA  183 (399)
T ss_pred             HHHHHhCCCCCEEEECCCCccchH----HHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCC
Confidence             56678899999999999999986    5566788999888753       67888888878899999999999999998


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCccccC----c----c-CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P----L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       157 ~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----~----~-~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                      +   +++|+++|+++|+++|+||+|....+..    .    . ....++++.||||.+ |.+|+|.||++++ +.+.+.+
T Consensus       184 s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~~i~~-~~l~~~~  261 (399)
T PRK07681        184 HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSY-SLAGSRIGYMIGN-EEIVRAL  261 (399)
T ss_pred             CHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeeccccc-CCccceeEEEecC-HHHHHHH
Confidence            7   7889999999999999999997543321    1    1 124579999999999 6678999999976 4566666


Q ss_pred             HHhhhhcCCCCCHHhHHHHHccc----ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          225 YFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .........+.+...+.++...+    +.+.+.++.+.++.+.+.+.|+++
T Consensus       262 ~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  312 (399)
T PRK07681        262 TQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF  312 (399)
T ss_pred             HHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            55554444445554444444433    234555667777788888888875

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.95  E-value=2e-25  Score=199.38  Aligned_cols=221  Identities=18%  Similarity=0.220  Sum_probs=167.0

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC----CceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|... |.+. ++++++++++.+|.    ++.+++++| ++++. ++..++++||+|++++|.|..+.    ..++..|
T Consensus        59 ~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g  134 (389)
T PRK05957         59 HKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHE----MAITMAG  134 (389)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHH----HHHHhcC
Confidence            356555 6666 89999999988875    345666666 58885 56667899999999999998886    3446778


Q ss_pred             cEEEEecCC-----CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-----
Q 022194          119 VVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----  185 (301)
Q Consensus       119 ~~~~~~~~~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----  185 (301)
                      ++++.++.+     |++++++.+++++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....+..     
T Consensus       135 ~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~  214 (389)
T PRK05957        135 CQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFS  214 (389)
T ss_pred             CEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccC
Confidence            898888764     789999999888999999999999999987   8889999999999999999987443321     


Q ss_pred             ----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc----cHHHHHHHH
Q 022194          186 ----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQ  257 (301)
Q Consensus       186 ----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~  257 (301)
                          +......+++.|+||.+ |.+|+|.|++++++ .+.+.+...........+...+.++...++    .+++..+++
T Consensus       215 ~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  292 (389)
T PRK05957        215 PGSIPGSGNHTISLYSLSKAY-GFASWRIGYMVIPI-HLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEI  292 (389)
T ss_pred             hhhCCCccCcEEEEecchhhc-cCccceeEEEecCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHH
Confidence                12234579999999999 67889999999875 566666655554444444444444444332    356666778


Q ss_pred             HHHHHHHHHHHHhCCC
Q 022194          258 QDNAQKIAEFLASHPR  273 (301)
Q Consensus       258 ~~~~~~l~~~l~~~~~  273 (301)
                      .++++.+.+.|+++++
T Consensus       293 ~~~r~~l~~~L~~~~~  308 (389)
T PRK05957        293 AQVRQILLKSLGQLQD  308 (389)
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            8888889999987654

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.95  E-value=9.9e-26  Score=202.02  Aligned_cols=252  Identities=15%  Similarity=0.145  Sum_probs=174.2

Q ss_pred             cceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCch-HHHHHHHHHhhcCCC-----ceEEecchH-HH
Q 022194           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPT-RDALESLLAKLDKAD-----RALCFTSGM-AA   82 (301)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~-~~~l~~~l~~~~~~~-----~~i~~~sG~-~a   82 (301)
                      ...+++|+.+.++++.  +|.+.... .. .........|...|.+. ++++.+++.+.+|.+     +.|++++|+ ++
T Consensus        43 ~~~~i~L~~g~p~~~~--~~~~~~~l-~~-~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a  118 (410)
T PRK06290         43 DMELIDMGVGEPDEMA--DESVVEVL-CE-EAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA  118 (410)
T ss_pred             CCCeEEcCCCCCCCCC--CHHHHHHH-HH-HHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH
Confidence            3457888855555552  33333221 11 01111223455446655 777888877765532     357777875 88


Q ss_pred             HH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCccc
Q 022194           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQ  154 (301)
Q Consensus        83 i~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~  154 (301)
                      +. ++..++++||.|++++|.|+.+.    ..++..|.++..++.+       |++.+++.+.+++++|++++|+||||.
T Consensus       119 l~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~  194 (410)
T PRK06290        119 LAMLPSCFINPGDVTLMTVPGYPVTG----THTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGA  194 (410)
T ss_pred             HHHHHHHhCCCCCEEEEeCCCCccHH----HHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCc
Confidence            85 56677899999999999999986    5566788888888764       678888888888999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCCcCCccccC---c-----cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          155 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---P-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       155 ~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~---~-----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                      +.+   +++|+++|++||++||+||+|....+..   .     ...+.++++.||||.+ |.+|+|.||+++++ .+.+.
T Consensus       195 v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~-g~~GlRiG~ii~~~-~l~~~  272 (410)
T PRK06290        195 VATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAY-NMTGWRLAFVVGNE-LIVKA  272 (410)
T ss_pred             CCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhc-CCchhheEeEEeCH-HHHHH
Confidence            987   6788899999999999999997543321   1     1124579999999999 56789999999864 55565


Q ss_pred             HHHhhhhcCCCCCHHhHHHHHccc---ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          224 LYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.........+.+...+.++...+   +.+.+.++++.++++.+.+.|+++
T Consensus       273 l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  323 (410)
T PRK06290        273 FATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV  323 (410)
T ss_pred             HHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            554444333333333333433333   234556677788888888888875

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.95  E-value=3.9e-26  Score=201.32  Aligned_cols=248  Identities=21%  Similarity=0.230  Sum_probs=179.7

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCcccc---CC-C-CchHHHHHHHHHhhcCCCceEEecchHHHHH-
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYT---RS-G-NPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~---~~-g-~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-   84 (301)
                      +.+++|+ +|+|+|...+|.+....-..-+   ...+.++   .. | .+.++++++.++++++.++.+++++|++++. 
T Consensus         1 ~~~~~~~-~~~~~~~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~   76 (349)
T cd06454           1 KKVLNFC-SNDYLGLANHPEVIEAAKEALD---KYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDG   76 (349)
T ss_pred             CCceecc-cCCccccCCCHHHHHHHHHHHH---HhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHH
Confidence            3689999 9999999988887765432211   1111111   11 3 3558999999999999988899999998874 


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC-----CceEEEEeCCCCCccccccHH
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-----WTKLVWVESPTNPRQQICDIR  159 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~-----~~~~v~i~~~~np~G~~~~l~  159 (301)
                      ++..++++||+|++++|.|.++..    .+...|.++++++..|.+++++.+++     +++++++++++||+|...|++
T Consensus        77 ~~~~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~  152 (349)
T cd06454          77 VLSTLAGKGDLIISDSLNHASIID----GIRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLP  152 (349)
T ss_pred             HHHHhcCCCCEEEEehhhhHHHHH----HHHHcCCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHH
Confidence            566778999999999999988763    34557888888877788888888763     578888899999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCcccc---------CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  230 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~~---------~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~  230 (301)
                      +|+++|+++|+++|+|++|+.+...         .....+.|++++|+||+++. +   +|+++.++ .+.+.+......
T Consensus       153 ~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~---gG~i~~~~-~~~~~~~~~~~~  227 (349)
T cd06454         153 ELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-V---GGYIAGSK-ELIDYLRSYARG  227 (349)
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-c---CCEEECCH-HHHHHHHHhchh
Confidence            9999999999999999999765432         11345789999999999954 3   47777664 444444333221


Q ss_pred             --cCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhC
Q 022194          231 --EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       231 --~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~  271 (301)
                        .+...++....++..+++.+   ...+++..++.+.+.+.|+++
T Consensus       228 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  273 (349)
T cd06454         228 FIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL  273 (349)
T ss_pred             hhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence              22344555454544444432   456677788888888888765

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.94  E-value=5e-26  Score=203.80  Aligned_cols=251  Identities=15%  Similarity=0.144  Sum_probs=178.3

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC--CC-chHHHHHHHHHhhcCCCceEEecchHHHHH-HH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~   86 (301)
                      ..+++|+ +++|+|...+|.+.......-.. ....+.-++.  |. +...++++.+++++|.+++++++||++|+. ++
T Consensus        38 ~~~i~~~-~~~~lg~~~~~~v~~~~~~~~~~-~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~  115 (393)
T TIGR01822        38 REVLNFC-ANNYLGLSSHPDLIQAAKDALDE-HGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLF  115 (393)
T ss_pred             ceEEEee-CCCccccCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHH
Confidence            4789999 89999999888877654322110 0112222232  53 447999999999999999999999998885 55


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC------CceEEEEeCCCCCccccccHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICDIRK  160 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~l~~  160 (301)
                      ..++++||+|+++++.|+++...+    +..+.....+...|++++++.+++      ++++|++++++|++|.+.|+++
T Consensus       116 ~~l~~~gd~vi~~~~~~~s~~~~~----~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~  191 (393)
T TIGR01822       116 ETLLGAEDAIISDALNHASIIDGV----RLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDE  191 (393)
T ss_pred             HHhCCCCCEEEEeccccHHHHHHH----HhcCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHH
Confidence            667899999999999999887544    223333344455688888888763      6889999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCccccC---------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh--
Q 022194          161 IAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--  229 (301)
Q Consensus       161 l~~l~~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~--  229 (301)
                      |+++|++||+++|+||+|+.+....         ....+.|++++|+||+++|+   ++|++++++ .+.+.+.....  
T Consensus       192 i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~---r~G~~~~~~-~~~~~l~~~~~~~  267 (393)
T TIGR01822       192 ICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGA---SGGFTTARK-EVVELLRQRSRPY  267 (393)
T ss_pred             HHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCC---CcEEEEeCH-HHHHHHHHhCccc
Confidence            9999999999999999997655421         11225789999999999653   579988764 45554443221  


Q ss_pred             hcCCCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          230 AEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ....+.++....++..+++.   .++.++++.++.+++.+.|++.
T Consensus       268 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  312 (393)
T TIGR01822       268 LFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA  312 (393)
T ss_pred             eecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            22233444443344444433   3456677888888898888764

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.94  E-value=4.8e-26  Score=198.10  Aligned_cols=249  Identities=23%  Similarity=0.214  Sum_probs=192.6

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC--CC-chHHHHHHHHHhhcCCCceEEecchHHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AAV   86 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai-~~~   86 (301)
                      ..++||+ +|||+|++.+|.+.......-+ ....+..-++.  |+ +...+||+.|++++|.+.+++++||..|. .++
T Consensus        39 ~~~~nf~-SNdYLGLa~~~~~~~a~~~~~~-~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i  116 (388)
T COG0156          39 RKVLNFC-SNDYLGLASHPELIEAAKAAIR-RYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLL  116 (388)
T ss_pred             ceeEeee-ccCcccccCCHHHHHHHHHHHH-HhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHH
Confidence            4689999 9999999999998766433211 11122223443  66 44999999999999999999999998665 688


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC------CceEEEEeCCCCCccccccHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICDIRK  160 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~l~~  160 (301)
                      .++++++|.|+.....|-+..    ..++..+.+++.....|+++||+.+++      +.++|++++...+.|.+.|+++
T Consensus       117 ~~l~~~~dli~~D~lnHASii----dG~rls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~  192 (388)
T COG0156         117 SALLKKGDLIFSDELNHASII----DGIRLSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPE  192 (388)
T ss_pred             HHhcCCCcEEEEechhhhhHH----HHHHhCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHH
Confidence            889999998888777777665    555677788888888999999999975      3578888999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCccccCc----------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh--
Q 022194          161 IAEMAHAHGALLLVDNSIMSPVLSRP----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--  228 (301)
Q Consensus       161 l~~l~~~~~~~li~D~~~~~~~~~~~----------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~--  228 (301)
                      |++++++|++++++||+|+.|+++..          .....|++++||+|+|++    .+|++.++ +.+.+.+....  
T Consensus       193 l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs----~Gg~v~g~-~~~~d~L~~~ar~  267 (388)
T COG0156         193 LVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS----SGGYIAGS-AALIDYLRNRARP  267 (388)
T ss_pred             HHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcc----cCceeeCc-HHHHHHHHHhCCc
Confidence            99999999999999999999887631          112358999999999964    35777765 56666554432  


Q ss_pred             hhcCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHh
Q 022194          229 NAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ..+...++|..++++...++.+   .+++++++++..++++.++.
T Consensus       268 ~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~  312 (388)
T COG0156         268 FIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKA  312 (388)
T ss_pred             eeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence            2345678888877777766654   57888999999999866655

>PRK07324 transaminase; Validated

Probab=99.94  E-value=2.4e-25  Score=197.63  Aligned_cols=221  Identities=20%  Similarity=0.244  Sum_probs=159.0

Q ss_pred             CccccCC-CCchHHHHHHHHHhhcC---CCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           46 PYDYTRS-GNPTRDALESLLAKLDK---ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        46 ~~~y~~~-g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      ...|++. |.+   ++++.++++++   .+++++++++++++. ++..++++||+|+++.|.|..+.    ..++..|.+
T Consensus        55 ~~~Y~~~~G~~---~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~g~~  127 (373)
T PRK07324         55 KLTYGWIEGSP---EFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLY----DIPESLGAE  127 (373)
T ss_pred             CccCCCCCCCH---HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCE
Confidence            3456654 554   45555555542   234544555568885 66778999999999999998886    556678888


Q ss_pred             EEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----c
Q 022194          121 VKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P  186 (301)
Q Consensus       121 ~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----~  186 (301)
                      ++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....+..    .
T Consensus       128 v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~  207 (373)
T PRK07324        128 VDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSI  207 (373)
T ss_pred             EEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCCh
Confidence            8888753       678999888889999999999999999987   8889999999999999999987543321    1


Q ss_pred             c-CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc----HHHHHHHHHHHH
Q 022194          187 L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNA  261 (301)
Q Consensus       187 ~-~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~  261 (301)
                      . ..+..+++.|+||.+ |.+|+|.||++++ +.+.+.+...........+...+.++...++.    +.+.++.+.++.
T Consensus       208 ~~~~~~~I~~~s~SK~~-~~~G~RiG~i~~~-~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~  285 (373)
T PRK07324        208 ADLYEKGISTNSMSKTY-SLPGIRVGWIAAN-EEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNL  285 (373)
T ss_pred             hhccCCEEEEecchhhc-CCccceeEEEecC-HHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            1 123568999999999 5678999999985 56767666665544444444444444444433    344455667777


Q ss_pred             HHHHHHHHhCCCcc
Q 022194          262 QKIAEFLASHPRVK  275 (301)
Q Consensus       262 ~~l~~~l~~~~~v~  275 (301)
                      +.+.+.|++++.+.
T Consensus       286 ~~l~~~l~~~~~~~  299 (373)
T PRK07324        286 AILDEWVAKEPRVS  299 (373)
T ss_pred             HHHHHHHhcCCCce
Confidence            78888888776553

>PLN00175 aminotransferase family protein; Provisional

Probab=99.94  E-value=2.4e-25  Score=199.95  Aligned_cols=220  Identities=18%  Similarity=0.221  Sum_probs=165.8

Q ss_pred             CccccCC-CCch-HHHHHHHHHhhcCCC----ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccC
Q 022194           46 PYDYTRS-GNPT-RDALESLLAKLDKAD----RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (301)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~~~~----~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~  117 (301)
                      ...|++. |.+. ++++.+++.+.++.+    +.+++++| ++++. ++..++++||+|++++|.|..+.    ..++..
T Consensus        84 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~  159 (413)
T PLN00175         84 KNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE----ATLSMA  159 (413)
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHc
Confidence            3457666 7766 788888888776642    24665665 68885 66778999999999999999886    555678


Q ss_pred             CcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC---
Q 022194          118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---  185 (301)
Q Consensus       118 g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~---  185 (301)
                      |.+++.++.+      |++++++.+.+++++|++++|+||||.+.+   +++|+++|++|++++|+||+|....+..   
T Consensus       160 g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~  239 (413)
T PLN00175        160 GAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHI  239 (413)
T ss_pred             CCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCccc
Confidence            8888888753      678999999888999999999999999975   7889999999999999999997544321   


Q ss_pred             -----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc----cHHHHHHH
Q 022194          186 -----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEK  256 (301)
Q Consensus       186 -----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~  256 (301)
                           ....+..++++||||.| +.+|+|.||+++++ .+.+.+.........+.+...+.++...++    .+.+.++.
T Consensus       240 s~~~~~~~~~~vi~i~SfSK~~-~~~G~RiG~~v~~~-~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~  317 (413)
T PLN00175        240 SMASLPGMYERTVTMNSLGKTF-SLTGWKIGWAIAPP-HLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRD  317 (413)
T ss_pred             ChhhCCCCcCcEEEEecchhhc-cCcchheeeeEeCH-HHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                 11135679999999999 55789999999875 455655555544444555555555544442    35666778


Q ss_pred             HHHHHHHHHHHHHhC
Q 022194          257 QQDNAQKIAEFLASH  271 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~  271 (301)
                      +.++++.+.+.|+++
T Consensus       318 ~~~~~~~l~~~L~~~  332 (413)
T PLN00175        318 YSAKKDILVEGLKEV  332 (413)
T ss_pred             HHHHHHHHHHHHHHC
Confidence            888888899999875

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.94  E-value=3.1e-25  Score=197.93  Aligned_cols=219  Identities=16%  Similarity=0.152  Sum_probs=160.6

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC----CceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|++. |.+. ++++.+++++.++.    ++.+++++| ++++. ++..++++||+|++++|+|+.+.    ..++..|
T Consensus        61 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~G  136 (383)
T TIGR03540        61 HRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYR----IGTLFAG  136 (383)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchH----HHHHhcC
Confidence            456665 6655 88888888876654    235666666 58886 55667899999999999999986    4556788


Q ss_pred             cEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC---
Q 022194          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---  185 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~---  185 (301)
                      .+++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|+++|++||+++|+||+|....+..   
T Consensus       137 ~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~  216 (383)
T TIGR03540       137 GEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKA  216 (383)
T ss_pred             CEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCC
Confidence            888887753       678888888888999999999999999987   7889999999999999999997433211   


Q ss_pred             ----c-c-CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc----ccHHHHHH
Q 022194          186 ----P-L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVE  255 (301)
Q Consensus       186 ----~-~-~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~  255 (301)
                          . . ....++++.||||+| |.+|+|.||+++++ .+.+.+.........+.+...+.++...+    +++++.++
T Consensus       217 ~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~i~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  294 (383)
T TIGR03540       217 PSFLEVDGAKDVGIEFHSLSKTY-NMTGWRIGMAVGNA-DLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRK  294 (383)
T ss_pred             cCcccCCCcccCEEEEEeccccc-CCccceeeEEeCCH-HHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHH
Confidence                0 1 123568999999999 67889999998864 55565555444333333443433433333    33456667


Q ss_pred             HHHHHHHHHHHHHHhC
Q 022194          256 KQQDNAQKIAEFLASH  271 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~  271 (301)
                      .+.++++.+.+.|+++
T Consensus       295 ~~~~~~~~~~~~L~~~  310 (383)
T TIGR03540       295 IYQRRRDLLLEALKKI  310 (383)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            7788888899999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PLN02368 alanine transaminase

Probab=99.94  E-value=5e-25  Score=196.47  Aligned_cols=224  Identities=15%  Similarity=0.181  Sum_probs=161.5

Q ss_pred             CccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHH-HHHhcc-CCCCeEEEcCCCCccHHHHHhhhcccC
Q 022194           46 PYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (301)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~-~~~~~~-~~g~~Vlv~~~~y~~~~~~~~~~~~~~  117 (301)
                      ...|++. |.+. ++++.+++.+.+|.+   +.+++++| ++++. ++..++ ++||+|++++|.|+.+.    ..+...
T Consensus       100 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~----~~~~~~  175 (407)
T PLN02368        100 LGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYS----ATISLL  175 (407)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHH----HHHHHc
Confidence            3457665 7655 888888888776632   45666666 58886 555566 69999999999999997    555677


Q ss_pred             CcEEEEecCC-------CHHHHHhhcCC------CceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCc
Q 022194          118 GVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (301)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~  181 (301)
                      |.+++.++.+       |++.+++.+++      +++++++++|+||||.+.+   +++|+++|++||++||+||+|...
T Consensus       176 g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l  255 (407)
T PLN02368        176 GGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQN  255 (407)
T ss_pred             CCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence            8888887653       67889888863      6899999999999999975   777899999999999999999765


Q ss_pred             cccC--cc---------------CCCCcEEEecccccccCCCCceeeEEEE--cchhHHHHHHHhhhhcCCCCCHHhHHH
Q 022194          182 VLSR--PL---------------ELGADIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQNAEGSGLAPFDCWI  242 (301)
Q Consensus       182 ~~~~--~~---------------~~~~di~~~S~sK~~~g~~g~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (301)
                      .+..  +.               ..+..+++.||||.|.+.+|+|.||+++  .++.+.+.+...... ....+...+.+
T Consensus       256 ~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~-~~~~~~~~Q~a  334 (407)
T PLN02368        256 IYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASI-ALSPNVSGQIF  334 (407)
T ss_pred             ccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhcc-cCCCCcHHHHH
Confidence            4321  00               1236799999999986678899999985  345566655554322 23344444444


Q ss_pred             HHcccc-------c----H---HHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          243 CLRGVK-------T----M---ALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       243 ~~~~l~-------~----~---~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      +...++       .    .   .+.++.+.+++..+.+.|++++++
T Consensus       335 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~  380 (407)
T PLN02368        335 MGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNV  380 (407)
T ss_pred             HHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence            443332       1    1   234567788888899999988765

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.94  E-value=1e-25  Score=200.66  Aligned_cols=246  Identities=14%  Similarity=0.170  Sum_probs=174.9

Q ss_pred             eecCCCCCCCCccccCeeecceeecCCCCCCCCccccC--CCC-chHHHHHHHHHhhcCCCceEEecchHHHH-HHHHhc
Q 022194           14 MNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTR--SGN-PTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHL   89 (301)
Q Consensus        14 ~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~--~g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai-~~~~~~   89 (301)
                      ++|+ +|||||+..+|.+.......-+. ...+..-++  +|. ....+|++.++++++.++++++++|+.+. .++..+
T Consensus         1 ~~f~-s~dyLgl~~~~~~~~~~~~a~~~-~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l   78 (392)
T PLN03227          1 LNFA-THDFLSTSSSPTLRQTALESLSH-YGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAF   78 (392)
T ss_pred             CCCc-CcCccCCCCCHHHHHHHHHHHHH-hCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHh
Confidence            5888 99999999999887654322110 000111111  233 35899999999999999999999998555 677889


Q ss_pred             cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHh---hcC-----------CCceEEEEeCCCCCcccc
Q 022194           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS---AIG-----------PWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        90 ~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~---~l~-----------~~~~~v~i~~~~np~G~~  155 (301)
                      +++||+|+++++.|.++...+    ...+.++.+++..|.+++++   .+.           +++++|+++++.|++|.+
T Consensus        79 ~~~GD~Vl~~~~~h~s~~~~~----~l~~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i  154 (392)
T PLN03227         79 AKRGDLLVVDRGVNEALLVGV----SLSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTL  154 (392)
T ss_pred             CCCCCEEEEeccccHHHHHHH----HHcCCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcc
Confidence            999999999999998886433    23345777777666655544   332           257899999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCccccC-----------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       156 ~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-----------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                      .|+++|.++|++||+++|+||+|+.+..+.           ....++|+++.|++|++ |+   ++|++++++ .+.+.+
T Consensus       155 ~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~---~gg~v~~~~-~~~~~~  229 (392)
T PLN03227        155 APLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GS---VGGMTVGSE-EVVDHQ  229 (392)
T ss_pred             cCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hc---cCcEEecCH-HHHHHH
Confidence            999999999999999999999998654432           11346799999999998 44   467777664 444443


Q ss_pred             HHhh--hhcCCCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHh
Q 022194          225 YFLQ--NAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       225 ~~~~--~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ....  ..++..+++..++++..++..   ..++++++.++.+++++.|++
T Consensus       230 ~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~  280 (392)
T PLN03227        230 RLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTN  280 (392)
T ss_pred             HHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence            3222  223344456555555544433   246778889999999999974

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.94  E-value=3.2e-25  Score=198.14  Aligned_cols=251  Identities=15%  Similarity=0.100  Sum_probs=168.5

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC--C-c-eEEecchH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA--D-R-ALCFTSGM-AAL   83 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~--~-~-~i~~~sG~-~ai   83 (301)
                      ..+++|+.+...++.  +|.+.... .. .........|.+. |.+. ++++.+++.+.+|.  + + .+++++|+ +++
T Consensus        30 ~~~i~l~~~~~~~~~--~~~~~~~~-~~-~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al  105 (388)
T PRK07366         30 KELIDLSLGSSDLPA--PAHALEAI-AQ-SLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGT  105 (388)
T ss_pred             CCeEEeCCCCCCCCC--CHHHHHHH-HH-HHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHH
Confidence            357888744444443  23332221 11 1111123456654 6655 77788887766553  2 3 57777775 888


Q ss_pred             H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccc
Q 022194           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~  155 (301)
                      . ++..++++||+|++++|+|..+.    ..++..|.+++.++.+       |++++++.+..+++++++++||||||.+
T Consensus       106 ~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~  181 (388)
T PRK07366        106 AHLPLAVLNPGDFALLLDPGYPSHA----GGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAI  181 (388)
T ss_pred             HHHHHHhCCCCCEEEEcCCCCcchH----HHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCcc
Confidence            6 55667899999999999999996    5667788898888764       4667777777789999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCCcCCccccC------cc----CCCCcEEEecccccccCCCCceeeEEEEcchhHHH
Q 022194          156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLSR------PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (301)
Q Consensus       156 ~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~------~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~  222 (301)
                      .+   +++|+++|+++|++||+||+|....+..      ..    .....++++||||++ |.+|+|.||+++++ .+.+
T Consensus       182 ~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~~-~li~  259 (388)
T PRK07366        182 APLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSY-NMGGFRIGFAIGNA-QLIQ  259 (388)
T ss_pred             CCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeeccccc-CCcchhheehcCCH-HHHH
Confidence            76   6778889999999999999987543321      11    112458899999999 66789999999764 5666


Q ss_pred             HHHHhhhhcCCCC-CHHhHHH--HHc-ccccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          223 ELYFLQNAEGSGL-APFDCWI--CLR-GVKTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       223 ~~~~~~~~~~~~~-~~~~~~~--~~~-~l~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+.........+. +.....+  .+. .-+.+.+.++.+.++.+.+.+.|+++
T Consensus       260 ~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~  312 (388)
T PRK07366        260 ALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI  312 (388)
T ss_pred             HHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            6655554433332 2221111  121 12345666777888888888888765

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.94  E-value=7e-25  Score=195.78  Aligned_cols=219  Identities=16%  Similarity=0.144  Sum_probs=158.9

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC----CceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|++. |.+. ++++.+++.+.+|.    ++.+++++| ++++. ++..++++||+|++++|.|+.+.    ..++..|
T Consensus        63 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~----~~~~~~g  138 (385)
T PRK09276         63 HQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYK----IGTIFAG  138 (385)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChH----HHHHHcC
Confidence            356655 6555 78888888776653    234666666 58886 55667899999999999999886    4556778


Q ss_pred             cEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC---
Q 022194          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---  185 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~---  185 (301)
                      .+++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....+..   
T Consensus       139 ~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~  218 (385)
T PRK09276        139 GEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKP  218 (385)
T ss_pred             CEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCC
Confidence            888877753       577888888888999999999999999987   6889999999999999999997543211   


Q ss_pred             -c-c----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc----ccHHHHHH
Q 022194          186 -P-L----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVE  255 (301)
Q Consensus       186 -~-~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~  255 (301)
                       . .    ..+.++++.||||.| |.+|+|.||+++++ .+.+.+.........+.+...+.++...+    +.+++.++
T Consensus       219 ~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~i~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  296 (385)
T PRK09276        219 PSFLEVPGAKDVGIEFHSLSKTY-NMTGWRIGFAVGNA-DLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRK  296 (385)
T ss_pred             CChhccCCCcCCEEEEecchhhc-CCcchhheeeeCCH-HHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHH
Confidence             1 1    124578999999999 67899999999864 45565555444333334444433333333    23455566


Q ss_pred             HHHHHHHHHHHHHHhC
Q 022194          256 KQQDNAQKIAEFLASH  271 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~  271 (301)
                      .+.++++.+.+.|++.
T Consensus       297 ~~~~~~~~l~~~L~~~  312 (385)
T PRK09276        297 IYQERRDILVEGLRKL  312 (385)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            7777788888888875

>PRK12414 putative aminotransferase; Provisional

Probab=99.94  E-value=1.2e-24  Score=194.13  Aligned_cols=249  Identities=18%  Similarity=0.220  Sum_probs=173.1

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCC-----ceEEecchHHHHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKAD-----RALCFTSGMAALA   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~-----~~i~~~sG~~ai~   84 (301)
                      .+++|+.+.+.++  .++.+.... ..  ........|.+. |.+. ++++++++++++|.+     +++++++|++++.
T Consensus        30 ~~i~l~~g~p~~~--~~~~~~~~~-~~--~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~  104 (384)
T PRK12414         30 DALNLSQGAPNFA--PDPALVEGV-AR--AMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLY  104 (384)
T ss_pred             CeEEcCCCCCCCC--CCHHHHHHH-HH--HHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHH
Confidence            5688874444443  233333221 11  011123457665 7666 889999999888762     3555555578885


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCccccc-
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQIC-  156 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~-  156 (301)
                       ++..++.+||+|++++|.|..+.    ..++..|.+++.++.+      |++.+++.+++++++|++++|+||||.+. 
T Consensus       105 ~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s  180 (384)
T PRK12414        105 AAISALVHPGDEVIYFEPSFDSYA----PIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFS  180 (384)
T ss_pred             HHHHHhcCCCCEEEEeCCCccchH----HHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCC
Confidence             66678999999999999998876    4445567888777753      67899999988899999999999999986 


Q ss_pred             --cHHHHHHHHHHcCCEEEEeCCcCCccccC----cc-----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHH
Q 022194          157 --DIRKIAEMAHAHGALLLVDNSIMSPVLSR----PL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (301)
Q Consensus       157 --~l~~l~~l~~~~~~~li~D~~~~~~~~~~----~~-----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~  225 (301)
                        ++++|+++|+++|+++|+||+|....+..    +.     ..+..+++.||||.+ |.+|+|.||+++++ .+.+.+.
T Consensus       181 ~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRiG~~v~~~-~l~~~l~  258 (384)
T PRK12414        181 AADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSY-HVTGWRVGYCLAPA-ELMDEIR  258 (384)
T ss_pred             HHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccc-cCccceEEEEecCH-HHHHHHH
Confidence              48889999999999999999997543321    11     123579999999999 66789999999875 4556555


Q ss_pred             HhhhhcCCCCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          226 FLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..........+...+.++...++   ...+.++.+.++++.+.+.|+++
T Consensus       259 ~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  307 (384)
T PRK12414        259 KVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS  307 (384)
T ss_pred             HHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence            55543344444444444444432   23344566777888888888875

>PLN02483 serine palmitoyltransferase

Probab=99.94  E-value=3.1e-25  Score=202.29  Aligned_cols=253  Identities=16%  Similarity=0.198  Sum_probs=177.7

Q ss_pred             CccceeeecCCCCCCCCccc-cCeeecceeecCCCCCCCCccccC--CCC-chHHHHHHHHHhhcCCCceEEecchHHHH
Q 022194            8 GVSTLLMNFSNEFDPYGALS-TPLYQTATFKQPSATENGPYDYTR--SGN-PTRDALESLLAKLDKADRALCFTSGMAAL   83 (301)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~-~p~~~~~~~~~~~~~~~~~~~y~~--~g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai   83 (301)
                      +....++||+ ++||||+.. +|.........-. ........++  +|. +..+++++.+++++|.++++++++|+.+.
T Consensus        97 ~~~~~~~n~~-s~~YLgl~~~~~~~~~~~~~ai~-~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an  174 (489)
T PLN02483         97 TKTRRCLNLG-SYNYLGFAAADEYCTPRVIESLK-KYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATN  174 (489)
T ss_pred             CCCceEEEee-cCCccCcCCCCHHHHHHHHHHHH-HhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHH
Confidence            3457899999 999999985 3433322211100 0011111333  353 45899999999999999999999998665


Q ss_pred             -HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC-------CC-----ce-EEEEeCCC
Q 022194           84 -AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-------PW-----TK-LVWVESPT  149 (301)
Q Consensus        84 -~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~-------~~-----~~-~v~i~~~~  149 (301)
                       .++.+++++||.|+++++.|.++.    ..++..|++++.++.+|.+++++.++       ++     .+ +|+++...
T Consensus       175 ~~~i~al~~~Gd~Vi~d~~~h~s~~----~~~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~  250 (489)
T PLN02483        175 STIIPALIGKGGLIISDSLNHNSIV----NGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIY  250 (489)
T ss_pred             HHHHHHhCCCCCEEEEcchhhHHHH----HHHHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCC
Confidence             467778999999999999999886    44567899999999888887776653       12     24 55556777


Q ss_pred             CCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc----------CccCCCCcEEEecccccccCCCCceeeEEEEcchh
Q 022194          150 NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (301)
Q Consensus       150 np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~----------~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~  219 (301)
                      |++|.+.++++|+++|++||+++|+||+|+.+..+          .....+.|++++||||+++ +.   +|++++++ .
T Consensus       251 s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g-~~---GG~i~~~~-~  325 (489)
T PLN02483        251 SMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFG-SC---GGYIAGSK-E  325 (489)
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcc-cC---ceEEEcCH-H
Confidence            99999999999999999999999999999865432          1112357999999999995 43   48888764 5


Q ss_pred             HHHHHHHhhhh--cCCCCCHHhHHHHHcccc---------cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          220 LAKELYFLQNA--EGSGLAPFDCWICLRGVK---------TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       220 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.+.+......  ....+++.....+..+++         ...++++++.++++.+++.|+++
T Consensus       326 li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~  388 (489)
T PLN02483        326 LIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM  388 (489)
T ss_pred             HHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC
Confidence            65655543321  233344444333333332         23456788899999999999886

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.94  E-value=1e-24  Score=195.35  Aligned_cols=219  Identities=18%  Similarity=0.246  Sum_probs=160.6

Q ss_pred             CccccCC-CCch-HHHHHHHHHhhcCCC-----ceEEecch-HHHHH-HHHhccCC---CCeEEEcCCCCccHHHHHhhh
Q 022194           46 PYDYTRS-GNPT-RDALESLLAKLDKAD-----RALCFTSG-MAALA-AVTHLLGT---GEEIVAGDDLYGGTDRLLSRV  113 (301)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~~~~-----~~i~~~sG-~~ai~-~~~~~~~~---g~~Vlv~~~~y~~~~~~~~~~  113 (301)
                      ...|... |.+. ++++.+++.+.+|.+     +.+++++| ++++. ++..++++   ||.|++++|.|..+.    ..
T Consensus        58 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~----~~  133 (396)
T PRK09147         58 LASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYE----GA  133 (396)
T ss_pred             hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchH----HH
Confidence            3456655 6665 888888888776632     36777676 58886 56668899   899999999999886    55


Q ss_pred             cccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccc
Q 022194          114 TPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (301)
Q Consensus       114 ~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~  183 (301)
                      ++..|.+++.++.+       |++.+++.+.++++++++++|+||||.+.+   +++|+++|++|+++||+||+|....+
T Consensus       134 ~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~  213 (396)
T PRK09147        134 ALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYF  213 (396)
T ss_pred             HHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeecccccccc
Confidence            66788889888753       578888877778999999999999999975   78889999999999999999976433


Q ss_pred             cCc------c---------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc-
Q 022194          184 SRP------L---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-  247 (301)
Q Consensus       184 ~~~------~---------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-  247 (301)
                      ...      .         ..+..+++.||||.+ +.+|+|.||+++++ .+.+.+.......+...+...+.++...+ 
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRiG~~~~~~-~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~  291 (396)
T PRK09147        214 DEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRS-NVPGLRSGFVAGDA-ALLKKFLLYRTYHGCAMPPAVQAASIAAWN  291 (396)
T ss_pred             CCCCCCchhhhhccccCccccccEEEEecccccc-CCccceeeeecCCH-HHHHHHHHHhhhcccCCCHHHHHHHHHHhc
Confidence            210      0         124569999999998 56789999999874 55565555444444445554444433333 


Q ss_pred             --ccHHHHHHHHHHHHHHHHHHHHh
Q 022194          248 --KTMALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       248 --~~~~~~~~~~~~~~~~l~~~l~~  270 (301)
                        +.+.+.++.+.++++.+.+.|++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~L~~  316 (396)
T PRK09147        292 DEAHVRENRALYREKFDAVTPILAP  316 (396)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH
Confidence              23455667777777778777766

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1e-24  Score=195.21  Aligned_cols=219  Identities=13%  Similarity=0.147  Sum_probs=158.8

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC----CceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|.+. |.+. ++++.+++.+.++.    ++.+++++| ++++. ++..++++||+|++++|.|+.+.    ..+...|
T Consensus        67 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g  142 (394)
T PRK05942         67 HGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHF----RGPLIAG  142 (394)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHHcC
Confidence            456655 6665 88888888776553    234666666 58885 56678999999999999999886    3345678


Q ss_pred             cEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC---
Q 022194          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---  185 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~---  185 (301)
                      .+++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....+..   
T Consensus       143 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~  222 (394)
T PRK05942        143 AQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQP  222 (394)
T ss_pred             CEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCC
Confidence            888887653       678898888889999999999999999987   7889999999999999999987443211   


Q ss_pred             -----cc-CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc----cHHHHHH
Q 022194          186 -----PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVE  255 (301)
Q Consensus       186 -----~~-~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~  255 (301)
                           .. ..+.++++.||||.| |.+|+|.|++++++ .+.+.+.........+.+...+.++...++    .+.+.++
T Consensus       223 ~~~~~~~~~~~~~i~~~SfSK~~-~~~GlRiG~i~~~~-~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  300 (394)
T PRK05942        223 TSLLEIPGAKDIGVEFHTLSKTY-NMAGWRVGFVVGNR-HIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQE  300 (394)
T ss_pred             CChhhCCCccccEEEEecchhcc-CChhhheeeeecCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHH
Confidence                 11 123568899999999 56789999999864 566666655543333444444444333333    2345556


Q ss_pred             HHHHHHHHHHHHHHhC
Q 022194          256 KQQDNAQKIAEFLASH  271 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~  271 (301)
                      ++.++.+.+.+.|++.
T Consensus       301 ~~~~~~~~~~~~L~~~  316 (394)
T PRK05942        301 RYRTRRDFLIQGLGEL  316 (394)
T ss_pred             HHHHHHHHHHHHHHHC
Confidence            6777777888888764

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.94  E-value=2e-24  Score=194.78  Aligned_cols=222  Identities=18%  Similarity=0.154  Sum_probs=156.5

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      .|++. |.+. ++++.+++.+..+.    +++++++++++++. ++..++++||+|++++|.|+.+.    ..+...|.+
T Consensus        89 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~----~~~~~~g~~  164 (430)
T PLN00145         89 SYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYE----ARAVFSGLE  164 (430)
T ss_pred             CCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHH----HHHHHcCCE
Confidence            56654 6554 67777777655443    34555555579996 55667899999999999999885    445566777


Q ss_pred             EEEecC-------CCHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----c
Q 022194          121 VKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P  186 (301)
Q Consensus       121 ~~~~~~-------~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----~  186 (301)
                      ++.++.       .|++++++.++++++++++++|+||||.+.+   +++|+++|+++|+++|+||+|....+..    +
T Consensus       165 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~  244 (430)
T PLN00145        165 VRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVP  244 (430)
T ss_pred             EEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccc
Confidence            777664       1789999999889999999999999999987   7889999999999999999997544321    1


Q ss_pred             ----cCCCCcEEEecccccccCCCCceeeEEEEc-chhHHH------HHHHhhhhcCCCCCHHhHHHHHcccc-----cH
Q 022194          187 ----LELGADIVMHSATKFIAGHSDVMAGVLAVK-GERLAK------ELYFLQNAEGSGLAPFDCWICLRGVK-----TM  250 (301)
Q Consensus       187 ----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~  250 (301)
                          ......++++||||.| +.+|+|.||+++. ++.+.+      .+..... .....+...+.++...++     .+
T Consensus       245 ~~~~~~~~~vi~~~S~SK~~-~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~  322 (430)
T PLN00145        245 MGVFGEVAPVLTLGSISKRW-VVPGWRLGWIATCDPNGILKETKVVDSIRNYLN-ISTDPATFVQGAIPQIIANTKEEFF  322 (430)
T ss_pred             hhhhcccCcEEEEecccccc-CCCCeeEEEEEEecchhhhhhhHHHHHHHHHhc-ccCCCCHHHHHHHHHHHhcCHHHHH
Confidence                1224679999999999 5678999999974 333322      2222221 112233444444433332     35


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          251 ALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      .+.++++.++++.+.+.|++++++.
T Consensus       323 ~~~~~~~~~~~~~~~~~L~~~~g~~  347 (430)
T PLN00145        323 TKTLGLLKETADICYEKIKEIKCIT  347 (430)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            6667788888888999998876553

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.2e-24  Score=194.06  Aligned_cols=221  Identities=16%  Similarity=0.196  Sum_probs=160.5

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..|.+. |.+. ++++.+++.+.++..   +.+++++| ++++. ++.+++++||+|++++|.|..+.    ..++..|.
T Consensus        60 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~----~~~~~~g~  135 (384)
T PRK06348         60 TRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYK----DQIEMVGG  135 (384)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcCC
Confidence            456655 6655 778888887665432   44555555 68886 66677899999999999999987    45556677


Q ss_pred             EEEEecC-------CCHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC---c
Q 022194          120 VVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---P  186 (301)
Q Consensus       120 ~~~~~~~-------~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~---~  186 (301)
                      +++.++.       .|++++++.+++++++|++++|+||||.+.+   +++|+++|+++++++|+||+|....+..   +
T Consensus       136 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~  215 (384)
T PRK06348        136 KPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVP  215 (384)
T ss_pred             EEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccc
Confidence            7777763       2678999988888999999999999999975   7889999999999999999998543321   1


Q ss_pred             ---cC--CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc----HHHHHHHH
Q 022194          187 ---LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQ  257 (301)
Q Consensus       187 ---~~--~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~  257 (301)
                         ..  .+.++++.||||.+ +.+|+|.||+++++ .+.+.+.........+.+...+.++...+..    +.+.++.+
T Consensus       216 ~~~~~~~~~~vi~~~SfSK~~-~l~GlRiG~~v~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  293 (384)
T PRK06348        216 MATLAGMPERTITFGSFSKDF-AMTGWRIGYVIAPD-YIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEF  293 (384)
T ss_pred             hhhcCCCcCcEEEEecchhcc-CCccccceeeecCH-HHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence               11  34679999999999 55689999999874 5666665555544444555554444433322    34555667


Q ss_pred             HHHHHHHHHHHHhCCC
Q 022194          258 QDNAQKIAEFLASHPR  273 (301)
Q Consensus       258 ~~~~~~l~~~l~~~~~  273 (301)
                      .++++.+.+.|++++.
T Consensus       294 ~~r~~~~~~~L~~~~~  309 (384)
T PRK06348        294 QKRLEYAYKRIESIPN  309 (384)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            7777888888887654

>PRK08068 transaminase; Reviewed

Probab=99.94  E-value=1.3e-24  Score=194.22  Aligned_cols=219  Identities=14%  Similarity=0.134  Sum_probs=156.8

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC--C-c-eEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA--D-R-ALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~--~-~-~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|++. |.+. ++++.+++.+.+|.  + + .+++++| ++++. ++..++++||+|++++|+|..+.    ..++..|
T Consensus        64 ~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g  139 (389)
T PRK08068         64 HKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYL----SGVALAR  139 (389)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHhcC
Confidence            456554 6655 77777777665553  2 3 4555555 57775 56777899999999999999886    5566788


Q ss_pred             cEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC---
Q 022194          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---  185 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~---  185 (301)
                      ++++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|+++|+++++++|+||+|....+..   
T Consensus       140 ~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~  219 (389)
T PRK08068        140 AQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKP  219 (389)
T ss_pred             CEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCC
Confidence            888888863       567888888878999999999999999987   5678889999999999999996432211   


Q ss_pred             ------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcc----cccHHHHHH
Q 022194          186 ------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG----VKTMALRVE  255 (301)
Q Consensus       186 ------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~  255 (301)
                            .......+++.||||.| |.+|+|.||+++++ .+.+.+.........+..+..+.++...    .+.+++.++
T Consensus       220 ~s~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~-~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  297 (389)
T PRK08068        220 VSFLQTPGAKDVGIELYTLSKTF-NMAGWRVAFAVGNE-SVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVA  297 (389)
T ss_pred             cChhhCCCccCCEEEEecchhcc-CCccceeEeEecCH-HHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHH
Confidence                  11123569999999999 66889999999764 5656555544433333332222222222    234566677


Q ss_pred             HHHHHHHHHHHHHHhC
Q 022194          256 KQQDNAQKIAEFLASH  271 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~  271 (301)
                      ++.++++.+.+.|+++
T Consensus       298 ~~~~~r~~~~~~L~~~  313 (389)
T PRK08068        298 RYESRRNAFISACREI  313 (389)
T ss_pred             HHHHHHHHHHHHHHHC
Confidence            7888888888888775

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.94  E-value=1.6e-24  Score=190.99  Aligned_cols=218  Identities=20%  Similarity=0.257  Sum_probs=160.2

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC--C-c-eEEecchH-HHHH-HHHhccCCC---CeEEEcCCCCccHHHHHhhhccc
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA--D-R-ALCFTSGM-AALA-AVTHLLGTG---EEIVAGDDLYGGTDRLLSRVTPK  116 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~--~-~-~i~~~sG~-~ai~-~~~~~~~~g---~~Vlv~~~~y~~~~~~~~~~~~~  116 (301)
                      .|... |.+. ++++.+++.+.+|.  + + .+++++|+ +++. ++..++++|   |+|++++|.|..+.    ..++.
T Consensus        31 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~----~~~~~  106 (350)
T TIGR03537        31 QYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYE----RGALF  106 (350)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchH----HHHHh
Confidence            46554 6655 88888888777663  2 3 67777775 8885 556678877   69999999999997    55678


Q ss_pred             CCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccCc
Q 022194          117 TGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP  186 (301)
Q Consensus       117 ~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~~  186 (301)
                      .|++++.++.+       |+++++++++++++++++++|+||||.+.+   +++|+++|+++|+++|+||+|....+...
T Consensus       107 ~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~  186 (350)
T TIGR03537       107 AGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP  186 (350)
T ss_pred             cCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC
Confidence            89999988763       678999988889999999999999999987   88899999999999999999975433211


Q ss_pred             ----c--CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc---ccHHHHHHHH
Q 022194          187 ----L--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQ  257 (301)
Q Consensus       187 ----~--~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~  257 (301)
                          .  ..+..+++.|+||.+ |.+|+|.|+++.+ +.+.+.+.......+...+.....++...+   +.+.+.++++
T Consensus       187 ~~~~~~~~~~~~i~~~s~SK~~-g~~GlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l  264 (350)
T TIGR03537       187 PHSALEVGIENVLAFHSLSKRS-GMTGYRSGFVAGD-EKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIF  264 (350)
T ss_pred             CCchhhcCcCCEEEEeeccccc-CCccccceeeecC-HHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHH
Confidence                1  234579999999999 5678999999875 456666655544444444433333332222   3345666777


Q ss_pred             HHHHHHHHHHHHhC
Q 022194          258 QDNAQKIAEFLASH  271 (301)
Q Consensus       258 ~~~~~~l~~~l~~~  271 (301)
                      .++...+.+.|+++
T Consensus       265 ~~~~~~~~~~l~~~  278 (350)
T TIGR03537       265 KRKRDLFIEFFNKV  278 (350)
T ss_pred             HHHHHHHHHHHHHC
Confidence            88888888888764

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PLN02656 tyrosine transaminase

Probab=99.93  E-value=2.6e-24  Score=193.30  Aligned_cols=258  Identities=16%  Similarity=0.130  Sum_probs=172.3

Q ss_pred             CccceeeecCCCCCCC-C-ccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----CceEEecch
Q 022194            8 GVSTLLMNFSNEFDPY-G-ALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSG   79 (301)
Q Consensus         8 ~~~~~~~~~~~~~~~~-g-~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG   79 (301)
                      .....+++|+.+...+ . ...++.+.... . ..........|++. |.+. ++++.+++.+.+|.    +++++++++
T Consensus        28 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~-~-~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~  105 (409)
T PLN02656         28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAV-V-DALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGC  105 (409)
T ss_pred             ccCCeeeecCCCCCCcCCCCCCCHHHHHHH-H-HHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCCh
Confidence            4456888988443332 1 22223233221 1 11111123457655 6655 77777777765443    344555555


Q ss_pred             HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCC
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNP  151 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np  151 (301)
                      ++++. ++..++++||+|++++|.|+.+.    ......|++++.++.+       |++++++.++++++++++++|+||
T Consensus       106 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NP  181 (409)
T PLN02656        106 TQAIDVALSMLARPGANILLPRPGFPIYE----LCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNP  181 (409)
T ss_pred             HHHHHHHHHHHhCCCCeEEEeCCCCCcHH----HHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCC
Confidence            68885 56667899999999999998875    4445578888877752       678899888888999999999999


Q ss_pred             ccccc---cHHHHHHHHHHcCCEEEEeCCcCCccccC----c----cCCCCcEEEecccccccCCCCceeeEEEEcc---
Q 022194          152 RQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSR----P----LELGADIVMHSATKFIAGHSDVMAGVLAVKG---  217 (301)
Q Consensus       152 ~G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~~~~----~----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~---  217 (301)
                      ||.+.   ++++|+++|+++|+++|+||+|....+..    +    ......+++.||||.| +.+|+|.||+++++   
T Consensus       182 tG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRiG~~i~~~~~~  260 (409)
T PLN02656        182 CGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRW-IVPGWRLGWFVTTDPSG  260 (409)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhc-cCcceeEEEEEEeCccc
Confidence            99996   58889999999999999999998544321    1    1224579999999998 56789999999852   


Q ss_pred             ----hhHHHHHHHhhhhcCCCCCHHhHHHHHcccc-----cHHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          218 ----ERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       218 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                          +.+.+.+....... ...+...+.++...++     .+.+.++.+.++++.+.+.|+.++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~-~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~  324 (409)
T PLN02656        261 SFRDPKIVERIKKYFDIL-GGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPC  324 (409)
T ss_pred             ccccHHHHHHHHHHHhhh-cCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence                35555555443322 2234444444433332     3556667778888888888887644

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.93  E-value=1.7e-24  Score=193.17  Aligned_cols=222  Identities=25%  Similarity=0.302  Sum_probs=162.0

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcC--C--CceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDK--A--DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~--~--~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..|.+. |.+. ++++.+++.+.+|  .  ++.+++++|++++. ++..++++||+|++++|.|..+.    ..++..|.
T Consensus        55 ~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~  130 (382)
T PRK06108         55 TFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLV----AAPKILGA  130 (382)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchH----HHHHHCCC
Confidence            346655 6665 8888888888777  2  34455555578886 55667899999999999999886    45567788


Q ss_pred             EEEEecCC--------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcccc-C--
Q 022194          120 VVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-R--  185 (301)
Q Consensus       120 ~~~~~~~~--------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~-~--  185 (301)
                      +++.++.+        |++++++.+++++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+...+. .  
T Consensus       131 ~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~  210 (382)
T PRK06108        131 RVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGR  210 (382)
T ss_pred             EEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCC
Confidence            88888763        678999988888999999999999999874   788999999999999999998755432 0  


Q ss_pred             ------cc-CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc----ccHHHHH
Q 022194          186 ------PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRV  254 (301)
Q Consensus       186 ------~~-~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~  254 (301)
                            .. ....++++.||||.+ |.+|+|.|++++++ .+.+.+...........+...+.++...+    +.+.+.+
T Consensus       211 ~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~  288 (382)
T PRK06108        211 APSFLDIAEPDDRIIFVNSFSKNW-AMTGWRLGWLVAPP-ALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELV  288 (382)
T ss_pred             CCCHhhcCCCcCCEEEEeechhhc-cCcccceeeeeCCH-HHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHH
Confidence                  01 124579999999999 56688999999875 45555544433333444444444433333    2345666


Q ss_pred             HHHHHHHHHHHHHHHhCCCc
Q 022194          255 EKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~v  274 (301)
                      +++.++.+.+.+.|++++++
T Consensus       289 ~~~~~~~~~l~~~L~~~~~~  308 (382)
T PRK06108        289 ARLRRSRDHLVDALRALPGV  308 (382)
T ss_pred             HHHHHHHHHHHHHHHhCCCC
Confidence            77778888888888876554

>PRK08960 hypothetical protein; Provisional

Probab=99.93  E-value=2.7e-24  Score=192.06  Aligned_cols=219  Identities=20%  Similarity=0.176  Sum_probs=154.9

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC--C-ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA--D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~--~-~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..|.+. |.+. ++.+.+++.+.+|.  + +.+++++| ++++. ++..++++||+|++++|.|+.+..    .+...|.
T Consensus        63 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~----~~~~~g~  138 (387)
T PRK08960         63 TRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRH----FLRLVEG  138 (387)
T ss_pred             CccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCC
Confidence            345544 6555 67777777665443  2 44555555 69986 566678999999999999999874    3445566


Q ss_pred             EEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----
Q 022194          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----  185 (301)
Q Consensus       120 ~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----  185 (301)
                      +++.++.+       |++++++.++++++++++++|+||||.+.+   +++|+++|+++|+++|+||+|....+..    
T Consensus       139 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~  218 (387)
T PRK08960        139 AAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAAS  218 (387)
T ss_pred             eEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Confidence            77666642       578999988888999999999999999986   6678888999999999999987543221    


Q ss_pred             ccC-CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc-----ccHHHHHHHHHH
Q 022194          186 PLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-----KTMALRVEKQQD  259 (301)
Q Consensus       186 ~~~-~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~  259 (301)
                      ... ....++++||||.+ |.+|+|.||+++++ .+.+.+...........+...+.++...+     +.+.+.++.+.+
T Consensus       219 ~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~  296 (387)
T PRK08960        219 VLEVDDDAFVLNSFSKYF-GMTGWRLGWLVAPP-AAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFAR  296 (387)
T ss_pred             hhhccCCEEEEeeccccc-CCcccEEEEEEcCH-HHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence            111 23568999999999 56789999999875 45565555544444444444443333322     335556677788


Q ss_pred             HHHHHHHHHHhC
Q 022194          260 NAQKIAEFLASH  271 (301)
Q Consensus       260 ~~~~l~~~l~~~  271 (301)
                      +++.+.+.|+++
T Consensus       297 ~~~~l~~~L~~~  308 (387)
T PRK08960        297 RRDFLLPALREL  308 (387)
T ss_pred             HHHHHHHHHHhc
Confidence            888898998875

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.93  E-value=2e-24  Score=193.22  Aligned_cols=222  Identities=18%  Similarity=0.243  Sum_probs=159.8

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..|.+. |.+. ++++.+++.+.+|.    ++.++++++++++. ++..++++||+|++++|+|..+.    ..+...|.
T Consensus        64 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~----~~~~~~g~  139 (391)
T PRK08361         64 THYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYV----EDAKIAEA  139 (391)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccH----HHHHHcCC
Confidence            345444 6555 66777777665553    34555555578885 66678899999999999999886    45556788


Q ss_pred             EEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----
Q 022194          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----  185 (301)
Q Consensus       120 ~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----  185 (301)
                      +++.++.+       |++++++.+++++++|++++|+||||.+.+   +++|+++|+++++++|+||+|....+..    
T Consensus       140 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~  219 (391)
T PRK08361        140 KPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHY  219 (391)
T ss_pred             EEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCC
Confidence            88887652       689999999888999999999999999998   8889999999999999999997543321    


Q ss_pred             c---cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc------cHHHHHHH
Q 022194          186 P---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK------TMALRVEK  256 (301)
Q Consensus       186 ~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~  256 (301)
                      +   .....++++.|+||.+ |.+|+|.|++++++ .+.+.+...........+...+.++...++      .+.+.++.
T Consensus       220 ~~~~~~~~~~i~~~s~SK~~-~~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  297 (391)
T PRK08361        220 PMIKYAPDNTILANSFSKTF-AMTGWRLGFVIAPE-QVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKE  297 (391)
T ss_pred             CHhhcCCCCEEEEecCchhc-CCcHhhhhhhccCH-HHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            1   1224679999999999 55789999999975 455555444443334444444444333332      24556677


Q ss_pred             HHHHHHHHHHHHHhCCCc
Q 022194          257 QQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~v  274 (301)
                      +.++.+.+.+.|++++++
T Consensus       298 ~~~~~~~~~~~L~~~~~~  315 (391)
T PRK08361        298 YNERRKLVLKRLKEMPHI  315 (391)
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            778888888999876554

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.93  E-value=4.9e-24  Score=193.85  Aligned_cols=217  Identities=16%  Similarity=0.221  Sum_probs=156.6

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC----C-ceEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcc-cC
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA----D-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-KT  117 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~----~-~~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~-~~  117 (301)
                      .|... |.+. ++++.+++.+.++.    + +.|++++|+ +++. ++..+++|||.|++++|.|..+.    ..+. ..
T Consensus        81 ~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~----~~~~~~~  156 (468)
T PLN02450         81 LFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFD----RDLKWRT  156 (468)
T ss_pred             cCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchH----HHHhhcC
Confidence            35555 6655 78888888776552    2 456677775 8885 66778899999999999999986    3333 57


Q ss_pred             CcEEEEecCC-------CHHHHHhhcCC------CceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCc
Q 022194          118 GVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (301)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~  181 (301)
                      |++++.++.+       |++.+++++.+      ++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+..
T Consensus       157 g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~  236 (468)
T PLN02450        157 GVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGT  236 (468)
T ss_pred             CcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEcccccc
Confidence            8888888753       56788877643      7899999999999999986   777899999999999999999854


Q ss_pred             cccC-----cc------------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHH
Q 022194          182 VLSR-----PL------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (301)
Q Consensus       182 ~~~~-----~~------------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (301)
                      .+..     ..            ..+..+++.||||.| +.+|+|.|+++++++.+.+.+......  ...+...+.++.
T Consensus       237 ~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~-~l~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~Q~a~~  313 (468)
T PLN02450        237 VFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDL-GLPGFRVGAIYSNDEMVVSAATKMSSF--GLVSSQTQYLLS  313 (468)
T ss_pred             ccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccC-CCCCccEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence            3221     00            134679999999999 667899999999876665554443322  223444444444


Q ss_pred             cccc-------cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          245 RGVK-------TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       245 ~~l~-------~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..++       .+.+.++++.++.+.+.+.|+++
T Consensus       314 ~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~  347 (468)
T PLN02450        314 ALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA  347 (468)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4432       24556677888888888888875

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.1e-24  Score=190.06  Aligned_cols=222  Identities=28%  Similarity=0.316  Sum_probs=171.0

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEecch-HHHHHHH-Hhc---cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           56 TRDALESLLAKLDKAD--RALCFTSG-MAALAAV-THL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~~sG-~~ai~~~-~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      ..++.++.++++++++  +.|+++.| |++++.+ ..+   +++||+|++++..|++....|....++.|+++++++.+ 
T Consensus        67 ~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~  146 (405)
T COG0520          67 LYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDD  146 (405)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCC
Confidence            3788899999999976  55666666 5888744 444   68899999999999999999999999999999999965 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          +.+++++.+++++++|.+++.+|.||.+.|+++|+++||++|+++++|.+++.+..+ +..+.++|++++|.|||+
T Consensus       147 ~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl  226 (405)
T COG0520         147 DGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWL  226 (405)
T ss_pred             CCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccc
Confidence                689999999999999999999999999999999999999999999999999999876 456789999999999988


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhh---------------------hcC-CCCCHHhHHHHHccccc-----HHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQN---------------------AEG-SGLAPFDCWICLRGVKT-----MALRVE  255 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~~~~~l~~-----~~~~~~  255 (301)
                      .||.|  .|+++++++.+.+ +.....                     ... .+.+......+..+++.     +.+..+
T Consensus       227 ~gP~G--iGvLy~r~~~l~~-l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~  303 (405)
T COG0520         227 LGPTG--IGVLYVRKELLEE-LEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEA  303 (405)
T ss_pred             cCCCc--eEEEEEchHHHhh-cCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHH
Confidence            89988  5999998765533 211000                     000 11122222222223332     234445


Q ss_pred             HHHHHHHHHHHHHHhCCCcceEecCC
Q 022194          256 KQQDNAQKIAEFLASHPRVKKVNYAG  281 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~v~~v~~p~  281 (301)
                      +..+..+++.+.|+++|+++ ++.|.
T Consensus       304 ~e~~L~~~~~~~L~~~~~v~-i~g~~  328 (405)
T COG0520         304 HERELTEYLLEGLSELPGVE-IYGPP  328 (405)
T ss_pred             HHHHHHHHHHHHHhcCCCeE-EecCC
Confidence            66677788888999999875 44443

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.93  E-value=3.2e-24  Score=187.45  Aligned_cols=231  Identities=19%  Similarity=0.225  Sum_probs=161.1

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecch-HHHHHHHHhcc
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLL   90 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG-~~ai~~~~~~~   90 (301)
                      .+++|++..+++|...+++ ....          ...|.   .+. .+|++.++++++.++ |++++| .+++..+. .+
T Consensus        21 ~~i~l~~ne~p~~~~~~~~-~~~~----------~~~yp---~~~-~~Lr~~ia~~~~~~~-I~it~Gs~~al~~~~-~~   83 (330)
T PRK05664         21 DWLDLSTGIAPWPWPVPAI-PADA----------WARLP---ETD-DGLEAAARAYYGAPQ-LLPVAGSQAAIQALP-RL   83 (330)
T ss_pred             HheeecCCcCCCCCCCccc-CHHH----------HHhCC---CCh-HHHHHHHHHHhCCCC-EEECcCHHHHHHHHH-Hc
Confidence            5788885547777654432 1111          00122   222 788999999999875 555555 58887554 45


Q ss_pred             CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHH
Q 022194           91 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHA  167 (301)
Q Consensus        91 ~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~  167 (301)
                      .+||+|++++|+|+.+.    ..++..|.+++.++.+   ++++.++ +++++++++|+||||.+.+   +++|+++|++
T Consensus        84 ~~gd~v~v~~P~y~~~~----~~~~~~g~~~~~v~~~---~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~  155 (330)
T PRK05664         84 RAPGRVGVLSPCYAEHA----HAWRRAGHQVRELDEA---EVEAALD-SLDVLVVVNPNNPTGRRFDPARLLAWHARLAA  155 (330)
T ss_pred             cCCCEEEEcCCChHHHH----HHHHHcCCeEEEechh---hHhhhhc-CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHh
Confidence            79999999999999996    6677889999999854   4555553 6788999999999999986   6667777899


Q ss_pred             cCCEEEEeCCcCCcccc----CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHH
Q 022194          168 HGALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (301)
Q Consensus       168 ~~~~li~D~~~~~~~~~----~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (301)
                      +++++|+||+|......    ........++++||||.+ |.+|+|.||+++++ .+.+.+.....  .+..+.....++
T Consensus       156 ~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~-gl~GlRiG~~v~~~-~l~~~~~~~~~--~~~~~~~~~~~~  231 (330)
T PRK05664        156 RGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFF-GLAGARLGFVLAEP-ALLRALAELLG--PWTVSGPTRWLA  231 (330)
T ss_pred             cCCEEEEECCcccCCCcccccccccCCCEEEEeeccccc-cCCCcceEEEEeCH-HHHHHHHHhcC--CCCCCHHHHHHH
Confidence            99999999999643211    111224569999999999 66789999999874 55565544432  233445544454


Q ss_pred             Hccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          244 LRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       244 ~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ...+..   ..+.++++.++++.+.+.|+++
T Consensus       232 ~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  262 (330)
T PRK05664        232 QAALADTPWQRRQRERLLAASQRLAALLRRH  262 (330)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            444433   3455677777888899999875

>PRK06855 aminotransferase; Validated

Probab=99.93  E-value=5.9e-24  Score=192.08  Aligned_cols=225  Identities=19%  Similarity=0.228  Sum_probs=154.2

Q ss_pred             CCccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           45 GPYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        45 ~~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..+.|.+. |.+. |+++.+++++.+|.+   +.+++++| ++++..+..++++||.|++++|.|+.+...   .....|
T Consensus        65 ~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~l~~~Gd~Vlv~~P~Y~~~~~~---~~~~~g  141 (433)
T PRK06855         65 KSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLLRREARVIGPSPAYSTHSSA---EAAHAG  141 (433)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHHhcCCCCeEEEeCCCCchHHHH---HHHhcC
Confidence            44567776 7766 888999988876542   45555665 588875556889999999999999987421   122346


Q ss_pred             cEEEEecCC-------CHHHHHhhcC--CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-
Q 022194          119 VVVKRVNTC-------DLDEVASAIG--PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-  185 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~l~--~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-  185 (301)
                      +.++.++.+       |++++++.++  ++++++++++|+||||.+.+   +++|+++|++||++||+||+|....+.. 
T Consensus       142 ~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~  221 (433)
T PRK06855        142 YPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGK  221 (433)
T ss_pred             CeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence            666655432       7899999886  46789999999999999986   7778899999999999999997554321 


Q ss_pred             ---c----cCCCCcEEEecccccccCCCCceeeEEEEcc----hhHHHHHHHhhhh--cCCCCCHHhHHHHHcccc----
Q 022194          186 ---P----LELGADIVMHSATKFIAGHSDVMAGVLAVKG----ERLAKELYFLQNA--EGSGLAPFDCWICLRGVK----  248 (301)
Q Consensus       186 ---~----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~----  248 (301)
                         +    ...+..++++||||.+ +.+|+|.||+++++    +.+.+.+......  .....+...+.++...++    
T Consensus       222 ~~~sl~~~~~~~~~I~~~S~SK~~-~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~  300 (433)
T PRK06855        222 KTVPLSEVIGDVPGIALKGISKEL-PWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEY  300 (433)
T ss_pred             CCCCHHHHcCcCCeEEEecCcccc-CCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcH
Confidence               1    1112469999999999 55789999999832    2222222222111  112234444444444442    


Q ss_pred             --cHHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          249 --TMALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       249 --~~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                        .+.+.++.+.++++.+.+.|+++++
T Consensus       301 ~~~~~~~~~~~~~r~~~~~~~L~~~~~  327 (433)
T PRK06855        301 KNYLKERNKRYEKRSNIAYEKLKDVPG  327 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence              2455667778888888888877644

>PRK08912 hypothetical protein; Provisional

Probab=99.93  E-value=3.8e-24  Score=191.13  Aligned_cols=250  Identities=21%  Similarity=0.207  Sum_probs=170.8

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCC---c-eEEecch-HHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKAD---R-ALCFTSG-MAAL   83 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~-~i~~~sG-~~ai   83 (301)
                      ...++|+.+....+.  +|.+.......  . ......|.+. |.+. ++++.+++.+.+|.+   + .+++++| ++++
T Consensus        26 ~~~i~l~~g~p~~~~--p~~~~~~~~~~--~-~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al  100 (387)
T PRK08912         26 HGAINLGQGFPDDPG--PEDVRRAAADA--L-LDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEAL  100 (387)
T ss_pred             CCeEEccCCCCCCCC--CHHHHHHHHHH--H-hcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHH
Confidence            367888844444432  23333221111  1 1123456665 6665 788888887766532   2 4555555 6888


Q ss_pred             H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                      . ++..++++||+|++++|.|..+.    ..++..|.+++.++.+      |++++++.+.++++++++++|+||||.+.
T Consensus       101 ~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~  176 (387)
T PRK08912        101 AAALLALVEPGDEVVLFQPLYDAYL----PLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVF  176 (387)
T ss_pred             HHHHHHhcCCCCEEEEeCCCchhhH----HHHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCccc
Confidence            5 66677899999999999999886    5567788888877653      67999999988899999999999999998


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCccccC--------c-cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLSR--------P-LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       157 ~---l~~l~~l~~~~~~~li~D~~~~~~~~~~--------~-~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                      +   +++|+++|+++++++|+||+|....+..        . ...+.+++++|+||.+ |.+|+|.|++++++ .+.+.+
T Consensus       177 s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~-~~~~~l  254 (387)
T PRK08912        177 PREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIF-SLTGWKVGFVCAAP-PLLRVL  254 (387)
T ss_pred             CHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhc-cCcCceeEEEecCH-HHHHHH
Confidence            6   7779999999999999999986433221        1 1124689999999999 66789999999875 455555


Q ss_pred             HHhhhhcCCCCCHHhHHHHHccc----ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          225 YFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .........+.++....++...+    +.+.+.++++.++.+.+.+.|+++
T Consensus       255 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  305 (387)
T PRK08912        255 AKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI  305 (387)
T ss_pred             HHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            54444333333333333332222    234566677788888888888875

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.93  E-value=4e-24  Score=197.25  Aligned_cols=254  Identities=17%  Similarity=0.179  Sum_probs=165.0

Q ss_pred             ceeeecCCCC-CCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcC--CC-ceEEecch-HHHH
Q 022194           11 TLLMNFSNEF-DPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDK--AD-RALCFTSG-MAAL   83 (301)
Q Consensus        11 ~~~~~~~~~~-~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~--~~-~~i~~~sG-~~ai   83 (301)
                      ..+++|+.++ ++++...++.+........  .  ....|++. |.+. |+++.+++.+..+  .+ +.|++++| ++++
T Consensus       146 ~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~--~--~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal  221 (517)
T PRK13355        146 THILKLNIGNPAPFGFRTPDEVVYDMAQQL--T--DTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELI  221 (517)
T ss_pred             CCeEEecCcCCCcCCCCCCHHHHHHHHHHh--h--cCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHH
Confidence            3567777433 4456544554443321111  1  22346665 6554 7777777755443  22 45666666 5888


Q ss_pred             H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccc
Q 022194           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~  155 (301)
                      . ++..++++||+|++++|.|..+.    ..++..|.+++.++.+       |++++++++.+++++|++++|+||||.+
T Consensus       222 ~~~~~~l~~~Gd~Vli~~P~y~~y~----~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v  297 (517)
T PRK13355        222 NLSMSALLDDGDEVLIPSPDYPLWT----ACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGAL  297 (517)
T ss_pred             HHHHHHhCCCCCEEEEcCCCCcCHH----HHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcC
Confidence            5 66778999999999999999986    5556778888777642       7899999998899999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCCcCCccccC-----ccCC---CCcEEEecccccccCCCCceeeEEEEcc-hh----
Q 022194          156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PLEL---GADIVMHSATKFIAGHSDVMAGVLAVKG-ER----  219 (301)
Q Consensus       156 ~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~~~~---~~di~~~S~sK~~~g~~g~~~g~~~~~~-~~----  219 (301)
                      .+   +++|+++|++||++||+||+|....+..     ....   ...++++||||.+ +.+|+|.||++++. +.    
T Consensus       298 ~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~i~~~~~~~~~~  376 (517)
T PRK13355        298 YPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSH-MIAGYRIGWMILSGNKRIAKD  376 (517)
T ss_pred             cCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhc-cCcccceEEEEeeCchhhHHH
Confidence            87   8889999999999999999987544321     1111   1246679999999 66789999998642 22    


Q ss_pred             HHHHHHHhhhhcCCCCCHHhHHHHHcccc---cHHHH---HHHHHHHHHHHHHHHHhCCCc
Q 022194          220 LAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALR---VEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~---~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      +.+.+..... .....+...+.++...+.   .+.+.   ..++.++++.+.+.|++++++
T Consensus       377 ~~~~l~~~~~-~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~  436 (517)
T PRK13355        377 YIEGLNMLAN-MRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGI  436 (517)
T ss_pred             HHHHHHHHhc-CcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            2232222222 112233344444433332   12222   234556677788888877554

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.93  E-value=6.2e-24  Score=190.75  Aligned_cols=220  Identities=17%  Similarity=0.125  Sum_probs=155.7

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC--C-ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA--D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~--~-~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..|++. |.+. ++++.+++.+.+|.  + +.+++++| ++++. ++..++++||.|++++|.|+.+.    ..+...|.
T Consensus        68 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~----~~~~~~g~  143 (409)
T PLN00143         68 NSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVE----TYAIFHHL  143 (409)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHH----HHHHHcCC
Confidence            447554 7665 78888888776543  2 45555566 58886 66667899999999999999986    55567788


Q ss_pred             EEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----
Q 022194          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----  185 (301)
Q Consensus       120 ~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----  185 (301)
                      +++.++..       |+++++++++++++++++++|+||||.+.+   +++|+++|+++++++|+||+|....+..    
T Consensus       144 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~  223 (409)
T PLN00143        144 EIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFV  223 (409)
T ss_pred             EEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCc
Confidence            88887642       789999988888999999999999999986   7788999999999999999997544321    


Q ss_pred             c----cCCCCcEEEecccccccCCCCceeeEEEEc-chhHHH------HHHHhhhhcCCCCCHHhHHHHHcccc-----c
Q 022194          186 P----LELGADIVMHSATKFIAGHSDVMAGVLAVK-GERLAK------ELYFLQNAEGSGLAPFDCWICLRGVK-----T  249 (301)
Q Consensus       186 ~----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~-----~  249 (301)
                      +    ......+++.||||.| +.+|+|.||++++ ++.+.+      .+......... .+...+.++...++     .
T Consensus       224 ~~~~~~~~~~vi~~~SfSK~f-~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~~~~~  301 (409)
T PLN00143        224 PMGLFASIVPVITLGSISKRW-MIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPEILEKTTEDF  301 (409)
T ss_pred             chhhhcccCcEEEEccchhhc-CCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHHHHhcChHHH
Confidence            1    1123579999999999 5678999999984 333322      22222221121 23334444433332     4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCC
Q 022194          250 MALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       250 ~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      +.+.++++.++.+.+.+.|++++
T Consensus       302 ~~~~~~~~~~~~~~~~~~L~~~~  324 (409)
T PLN00143        302 FSKTINILRAALAFCYDKLKEIP  324 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC
Confidence            56667777777888888887754

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.93  E-value=1.5e-24  Score=189.55  Aligned_cols=214  Identities=19%  Similarity=0.216  Sum_probs=160.4

Q ss_pred             ccCCCCchHHHHHHHHHhhcCCC-ceEEecchH-HHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           49 YTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        49 y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      +..++.+...+++++++++++.+ +.+++++|+ +++.++..++.+| .|++++|.|+.+.    ..++..|++++.++ 
T Consensus        41 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l~~g-~vl~~~p~y~~~~----~~~~~~g~~~~~~~-  114 (330)
T TIGR01140        41 WARYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLLAPG-RVLVLAPTYSEYA----RAWRAAGHEVVELP-  114 (330)
T ss_pred             HhhCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhCCC-eEEEeCCCcHHHH----HHHHHcCCEEEEeC-
Confidence            33444444688999999999875 667777775 7787777778888 6999999999886    55668899999988 


Q ss_pred             CCHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-cc----CCCCcEEEecc
Q 022194          127 CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-PL----ELGADIVMHSA  198 (301)
Q Consensus       127 ~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~----~~~~di~~~S~  198 (301)
                       |++++++.+ .++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....... ..    ..+.++++.|+
T Consensus       115 -d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~  192 (330)
T TIGR01140       115 -DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSL  192 (330)
T ss_pred             -CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEec
Confidence             899999888 46789999999999999987   7778889999999999999997544321 11    23567999999


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      ||++ |++|+|.|+++++++ +.+.+.....  .+..+...+.++...++.   ....++++.++.+.+.+.|++++.+
T Consensus       193 SK~~-g~~G~R~G~i~~~~~-~~~~l~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  267 (330)
T TIGR01140       193 TKFF-GLAGLRLGFVVAHPA-LLARLREALG--PWTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGL  267 (330)
T ss_pred             chhh-cCchhhhhheeCCHH-HHHHHHhcCC--CCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            9999 567899999998754 5555544332  334455555555444432   3455677888888899999887644

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.93  E-value=4.7e-24  Score=193.04  Aligned_cols=217  Identities=14%  Similarity=0.118  Sum_probs=156.0

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCCCceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEE
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKADRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~  123 (301)
                      .|+.. |.+. ++.+.+++.+..+.++.+++++| ++++. ++..+++|||.|++++|+|+.+.    ..++..|++++.
T Consensus       116 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~----~~~~~~g~~~~~  191 (431)
T PRK15481        116 LYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSI----NMLRYAGFSASP  191 (431)
T ss_pred             hcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcCCeEEe
Confidence            35443 5443 55555555543444445666666 58886 66678899999999999999996    666778899988


Q ss_pred             ecCC----CHHHHHhhcCCCceEEEEe-CCCCCccccccH---HHHHHHHHHc-CCEEEEeCCcCCcccc---Ccc--CC
Q 022194          124 VNTC----DLDEVASAIGPWTKLVWVE-SPTNPRQQICDI---RKIAEMAHAH-GALLLVDNSIMSPVLS---RPL--EL  189 (301)
Q Consensus       124 ~~~~----d~~~l~~~l~~~~~~v~i~-~~~np~G~~~~l---~~l~~l~~~~-~~~li~D~~~~~~~~~---~~~--~~  189 (301)
                      ++.+    |++.+++++++++++++++ +||||||.+.+.   ++|+++|+++ +++||+||+|......   ...  ..
T Consensus       192 v~~~~~g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~  271 (431)
T PRK15481        192 VSVDAEGMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTT  271 (431)
T ss_pred             eccCCCCCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCC
Confidence            8864    6889999888788988887 999999999875   5899999999 9999999998743321   111  22


Q ss_pred             CCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc------HHHHHHHHHHHHHH
Q 022194          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQK  263 (301)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~  263 (301)
                      ...++++||||.| + +|+|.||+++++ .+.+.+...........+...+.++...++.      +.+.++.+.++.+.
T Consensus       272 ~~vi~~~SfSK~~-~-~GlRiG~~i~~~-~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~  348 (431)
T PRK15481        272 QRWALIRSVSKAL-G-PDLRLAFVASDS-ATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQK  348 (431)
T ss_pred             CCEEEEeeecccc-C-CCceeEEEeCCH-HHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            4679999999999 4 689999999874 4555554433333333455555554444322      45566778888888


Q ss_pred             HHHHHHhC
Q 022194          264 IAEFLASH  271 (301)
Q Consensus       264 l~~~l~~~  271 (301)
                      +.+.|+++
T Consensus       349 ~~~~L~~~  356 (431)
T PRK15481        349 LARALQQY  356 (431)
T ss_pred             HHHHHHHc
Confidence            88888864

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.93  E-value=1.8e-24  Score=188.64  Aligned_cols=244  Identities=18%  Similarity=0.259  Sum_probs=184.3

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC-CC-ceEEecchH-HHHH-HHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-AD-RALCFTSGM-AALA-AVT   87 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~-~~-~~i~~~sG~-~ai~-~~~   87 (301)
                      ..++|++..+++|+.  |.+........+       .+.+|.++...++++.++++++ .+ +.++++.|+ +.|. .+.
T Consensus        23 ~~i~LssNenP~gp~--~~~~~~~~~~~~-------~~~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~   93 (356)
T COG0079          23 GIIKLSSNENPYGPP--PKVIEAIRAALD-------KLNRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVR   93 (356)
T ss_pred             cceeecCCCCCCCCC--HHHHHHHHHHHH-------hhccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHH
Confidence            688998888888855  433332211100       2334445568899999999998 55 677778887 7776 667


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC----CCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE  163 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~  163 (301)
                      .++.+||+|+++.|+|..|.    ..++..|++++.++.    .|++.+.+.+.+++++|++++||||||...+.++|.+
T Consensus        94 ~~~~~gd~vl~~~Ptf~~Y~----~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~  169 (356)
T COG0079          94 AFVEPGDTVLIPEPTFSMYE----IAAQLAGAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRA  169 (356)
T ss_pred             HhhcCCCEEEEcCCChHHHH----HHHHhcCCeEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence            78999999999999999986    667889999999997    4788899888889999999999999999998777777


Q ss_pred             HHHHc--CCEEEEeCCcCCccccCcc----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCH
Q 022194          164 MAHAH--GALLLVDNSIMSPVLSRPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  237 (301)
Q Consensus       164 l~~~~--~~~li~D~~~~~~~~~~~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (301)
                      ++...  +.++|+||+|....-....    .....+++.||||+| |.+|+|.|+.+++ +.+.+.+.....  .+.++.
T Consensus       170 l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~-gLAGlRlGy~ia~-~~~i~~l~~vr~--p~~v~~  245 (356)
T COG0079         170 LLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAF-GLAGLRVGYAIAN-PELIAALNKVRP--PFNVSS  245 (356)
T ss_pred             HHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhh-hcchhceeeccCC-HHHHHHHHHhcC--CCCCCH
Confidence            77654  8899999999754432211    344579999999999 7899999998776 456675555554  455555


Q ss_pred             HhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhCC
Q 022194          238 FDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       238 ~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      .+..++..+++   .+.+.++...+.++++.+.|++++
T Consensus       246 ~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~  283 (356)
T COG0079         246 PALAAAIAALRDADYLEESVERIREERERLYAALKALG  283 (356)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            65555555443   456777888888899999999876

>PRK07682 hypothetical protein; Validated

Probab=99.93  E-value=4.7e-24  Score=190.00  Aligned_cols=219  Identities=16%  Similarity=0.195  Sum_probs=160.0

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC----CceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|.+. |.+. ++++.+++.+.+|.    ++.+++++| ++|+. ++..++++||+|++++|+|+.+.    ..++..|
T Consensus        51 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g  126 (378)
T PRK07682         51 TSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYA----PLVTLAG  126 (378)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhH----HHHHHcC
Confidence            446554 6655 78888888776554    234555555 68886 56678899999999999999886    4445567


Q ss_pred             cEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC---
Q 022194          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---  185 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~---  185 (301)
                      .++..++.+       |++++++++.++++++++++|+||||.+.+   +++|+++|++|++++|+||+|....+..   
T Consensus       127 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~  206 (378)
T PRK07682        127 GVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYT  206 (378)
T ss_pred             CEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCC
Confidence            777777642       689999999888999999999999999975   8889999999999999999988554321   


Q ss_pred             -----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc----cHHHHHHH
Q 022194          186 -----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEK  256 (301)
Q Consensus       186 -----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~  256 (301)
                           ......++++.||||.| +.+|+|.||+++++ .+.+.+...........+...+.++...++    .+.+.++.
T Consensus       207 ~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~~~~~~-~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~  284 (378)
T PRK07682        207 SFASIKGMRERTILISGFSKGF-AMTGWRLGFIAAPV-YFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDS  284 (378)
T ss_pred             ChhhcccccCCEEEEecCcccc-cChhhhhhhhhcCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHH
Confidence                 11124679999999999 55789999999875 466655544444334445555444444432    34556677


Q ss_pred             HHHHHHHHHHHHHhC
Q 022194          257 QQDNAQKIAEFLASH  271 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~  271 (301)
                      +.++++.+.+.|+++
T Consensus       285 ~~~~~~~~~~~L~~~  299 (378)
T PRK07682        285 YRKRRNFFVTSFNEI  299 (378)
T ss_pred             HHHHHHHHHHHHHHC
Confidence            788888899999875

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.93  E-value=5.4e-24  Score=190.50  Aligned_cols=249  Identities=18%  Similarity=0.231  Sum_probs=170.4

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----C--ceEEecch-HH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----D--RALCFTSG-MA   81 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~--~~i~~~sG-~~   81 (301)
                      ...++|+.+.+.+++  ++.+.... .. ..  .....|.+. |.+. ++++.+++.+.++.    +  +.+++++| ++
T Consensus        28 ~~~i~l~~~~p~~~~--~~~~~~a~-~~-~~--~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~  101 (393)
T TIGR03538        28 KPPIALSIGEPKHPT--PAFVLEAL-RE-NL--HGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTRE  101 (393)
T ss_pred             CCeEEecCCCCCCCC--CHHHHHHH-HH-Hh--hccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHH
Confidence            467788744444442  23333221 11 11  123456655 6665 88888888776542    2  35777777 58


Q ss_pred             HHH-HHHhccCCCCe--EEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCC
Q 022194           82 ALA-AVTHLLGTGEE--IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNP  151 (301)
Q Consensus        82 ai~-~~~~~~~~g~~--Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np  151 (301)
                      ++. ++..+++|||.  |++++|.|..+.    ..+...|++++.++.+       |++++++++.+++++|++++|+||
T Consensus       102 al~~~~~~l~~~gd~~~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NP  177 (393)
T TIGR03538       102 ALFAFAQAVINPGQAPLVVMPNPFYQIYE----GAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNP  177 (393)
T ss_pred             HHHHHHHHHcCCCCcceEEecCCCCcchH----HHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCC
Confidence            886 55667899986  999999999886    5566788888888752       678888888778999999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC---c------------cCCCCcEEEecccccccCCCCceeeEE
Q 022194          152 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---P------------LELGADIVMHSATKFIAGHSDVMAGVL  213 (301)
Q Consensus       152 ~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~---~------------~~~~~di~~~S~sK~~~g~~g~~~g~~  213 (301)
                      ||.+.+   +++|+++|++||++||+||+|....+..   +            ......+++.||||.+ +.+|+|.||+
T Consensus       178 tG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~~~GlRvG~~  256 (393)
T TIGR03538       178 TGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRS-NLPGLRSGFV  256 (393)
T ss_pred             cCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhc-CCcccceEEE
Confidence            999986   7889999999999999999987543221   0            0123569999999998 5678999999


Q ss_pred             EEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          214 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++++ .+.+.+.......+...+...+.++...+.   .+.+.++.+.++.+.+.+.|+++
T Consensus       257 i~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~  316 (393)
T TIGR03538       257 AGDA-EILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV  316 (393)
T ss_pred             ecCH-HHHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9874 455555544443444445444444333332   34555667777777788888764

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.93  E-value=1.4e-23  Score=176.56  Aligned_cols=228  Identities=22%  Similarity=0.314  Sum_probs=177.2

Q ss_pred             CCCCCccccCCCCc-hHHHHHHHHHhhcCCC---ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcc
Q 022194           42 TENGPYDYTRSGNP-TRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP  115 (301)
Q Consensus        42 ~~~~~~~y~~~g~~-~~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~  115 (301)
                      ...+.++|+ ++.. ..+++.++.++.++.+   +.++++.| ..+++ ++..+.++||.|++..|.|+++.    ...+
T Consensus        51 vdhGvfGY~-~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~----~~i~  125 (388)
T COG1168          51 VDHGVFGYP-YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFY----NAIK  125 (388)
T ss_pred             HhcCCCCCC-CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEecCCCchHHH----HHHh
Confidence            355778888 6555 4899999999998754   56766666 58886 77889999999999999999997    6777


Q ss_pred             cCCcEEEEecCC--------CHHHHHhhcCC-CceEEEEeCCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCccc
Q 022194          116 KTGVVVKRVNTC--------DLDEVASAIGP-WTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVL  183 (301)
Q Consensus       116 ~~g~~~~~~~~~--------d~~~l~~~l~~-~~~~v~i~~~~np~G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~~  183 (301)
                      ..|.++...++.        |++++|+++.. +++++++|+||||+|.+.   ++.+|+++|++||+.+|.||+|...++
T Consensus       126 ~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~  205 (388)
T COG1168         126 LNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVL  205 (388)
T ss_pred             hcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccc
Confidence            888899888864        89999998875 579999999999999996   589999999999999999999986544


Q ss_pred             cC----------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHH-HHHhhhhcCCCCCHHhHHH----HHcccc
Q 022194          184 SR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGLAPFDCWI----CLRGVK  248 (301)
Q Consensus       184 ~~----------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~l~  248 (301)
                      ..          +......+.+.|.||+| ..+|+..+.++.+++.+..+ ++.+.......++.+...+    ..++-.
T Consensus       206 ~g~~h~~~a~ls~~~a~~~it~~saSKtF-NlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~  284 (388)
T COG1168         206 GGHKHIPFASLSERFADNSITLTSASKTF-NLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEP  284 (388)
T ss_pred             cCCCccchhhcChhhhcceEEEeeccccc-cchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhchH
Confidence            32          11123569999999999 67899999999988877443 3333333334444444333    344556


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhC-CCcc
Q 022194          249 TMALRVEKQQDNAQKIAEFLASH-PRVK  275 (301)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~~-~~v~  275 (301)
                      ++.+..+.+..|..++.+.+.++ |.++
T Consensus       285 WLd~L~~yl~~N~~~~~~~l~~~~P~v~  312 (388)
T COG1168         285 WLDELLEYLKDNRDYVADFLNKHLPGVK  312 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCcE
Confidence            78888899999999999999874 5653

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.93  E-value=8.2e-24  Score=189.48  Aligned_cols=222  Identities=21%  Similarity=0.268  Sum_probs=161.0

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      .|... |.+. ++++.+++.+.++.    ++.++++++++++. ++..++++||.|++++|.|..+.    ..++..|.+
T Consensus        63 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~  138 (393)
T PRK05764         63 KYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYP----EMVKLAGGV  138 (393)
T ss_pred             CcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchH----HHHHHcCCE
Confidence            45544 4433 56666666555443    24444555568886 56667899999999999999886    455677888


Q ss_pred             EEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-----
Q 022194          121 VKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----  185 (301)
Q Consensus       121 ~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----  185 (301)
                      +..++.+       |++++++++++++++|++++|+||||.+.+   +++|+++|++||+++|+||+|+...+..     
T Consensus       139 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~  218 (393)
T PRK05764        139 PVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTS  218 (393)
T ss_pred             EEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCccc
Confidence            8888764       578999999888999999999999999965   8889999999999999999987543311     


Q ss_pred             -----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc----cHHHHHHH
Q 022194          186 -----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEK  256 (301)
Q Consensus       186 -----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~  256 (301)
                           ....+.++++.|+||++ +.+|+|.|+++.+ +.+.+.+...........++..++++.+.++    .+.+.+++
T Consensus       219 ~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~i~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  296 (393)
T PRK05764        219 IASLSPELRDRTITVNGFSKAY-AMTGWRLGYAAGP-KELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQA  296 (393)
T ss_pred             HHHcCCCCcCCEEEEecCcccc-cCccceeEEEecC-HHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHH
Confidence                 12235789999999999 6568899999976 4566666555554455556665555544443    24455667


Q ss_pred             HHHHHHHHHHHHHhCCCcc
Q 022194          257 QQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~v~  275 (301)
                      +.++...+.+.|++++++.
T Consensus       297 ~~~~~~~l~~~L~~~~g~~  315 (393)
T PRK05764        297 FEERRDLMVDGLNEIPGLE  315 (393)
T ss_pred             HHHHHHHHHHHHhhCCCCc
Confidence            7778888899998875543

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.93  E-value=6.6e-24  Score=194.26  Aligned_cols=224  Identities=18%  Similarity=0.215  Sum_probs=156.3

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHH-HHHhcc-CCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~-~~~~~~-~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|++. |.+. ++++.+++.+..|.+   +.|++++| ++++. ++..++ ++||.|++++|.|+.+.    ..++..|
T Consensus       109 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~----~~~~~~g  184 (481)
T PTZ00377        109 GAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYS----AAITLLG  184 (481)
T ss_pred             cCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHH----HHHHHcC
Confidence            446665 7765 888888887765532   45666666 58886 455666 69999999999999997    5556777


Q ss_pred             cEEEEecCC-------CHHHHHhhcCC------CceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcc
Q 022194          119 VVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~  182 (301)
                      .+++.++.+       |++++++++.+      +++++++++|+||||.+.+   +++|+++|+++|++||+||+|....
T Consensus       185 ~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~  264 (481)
T PTZ00377        185 GKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENI  264 (481)
T ss_pred             CEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence            888877653       57889888763      7899999999999999987   8889999999999999999997544


Q ss_pred             ccC--c--------cCC-------CCcEEEecccccccCCCCceeeEEEE--cchhHHHHHHHhhhhcCCCCCHHhHHHH
Q 022194          183 LSR--P--------LEL-------GADIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQNAEGSGLAPFDCWIC  243 (301)
Q Consensus       183 ~~~--~--------~~~-------~~di~~~S~sK~~~g~~g~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (301)
                      +..  +        ...       ...++++||||.+.+.+|+|.||+++  .++.+.+.+...... ....+...+.++
T Consensus       265 ~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~-~~~~~~~~Q~a~  343 (481)
T PTZ00377        265 YDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASI-NLCSNVVGQLMT  343 (481)
T ss_pred             cCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhhe-ecCCChHHHHHH
Confidence            311  1        011       13589999999865778999999987  245666666554432 223444444443


Q ss_pred             Hcccc-------c---H----HHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          244 LRGVK-------T---M----ALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       244 ~~~l~-------~---~----~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      ...++       .   +    .+.++.+.++++.+.+.|++++++.
T Consensus       344 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~  389 (481)
T PTZ00377        344 GLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVS  389 (481)
T ss_pred             HHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence            33331       1   1    1222345677778888998876543

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.93  E-value=1.2e-23  Score=189.35  Aligned_cols=221  Identities=17%  Similarity=0.178  Sum_probs=155.9

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcC--------C-CceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhh
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDK--------A-DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRV  113 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~--------~-~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~  113 (301)
                      ..|.+. |.+. ++++.+++.+.++        . ++.+++++| ++++. ++..++++||+|++++|+|..+.    ..
T Consensus        69 ~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~----~~  144 (412)
T PTZ00433         69 NGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYE----TV  144 (412)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHH----HH
Confidence            456655 6655 7777777765432        2 244555555 68886 56667899999999999999986    55


Q ss_pred             cccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccc
Q 022194          114 TPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (301)
Q Consensus       114 ~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~  183 (301)
                      ++..|++++.++.+       |++++++++++++++|++++|+||||.+.+   +++|+++|+++|++||+||+|....+
T Consensus       145 ~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~  224 (412)
T PTZ00433        145 CKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVF  224 (412)
T ss_pred             HHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEecccccccc
Confidence            67788888888753       678999888888999999999999999865   78889999999999999999975433


Q ss_pred             cC--------ccCCCCcEEEecccccccCCCCceeeEEEEcc-----hhHHHHHHHhhhhcCCCCCHHhHHHHHccc---
Q 022194          184 SR--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKG-----ERLAKELYFLQNAEGSGLAPFDCWICLRGV---  247 (301)
Q Consensus       184 ~~--------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---  247 (301)
                      ..        .......++++||||.+ |.+|+|.||+++.+     +.+.+.+...... ....+...+.++...+   
T Consensus       225 ~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~  302 (412)
T PTZ00433        225 NGATFTSVADFDTTVPRVILGGTAKNL-VVPGWRLGWLLLVDPHGNGGDFLDGMKRLGML-VCGPCSVVQAALGEALLNT  302 (412)
T ss_pred             CCCCccchhhccCCCceEEEccchhhc-CCCCeeEEEEEEeCCcccHHHHHHHHHHHhhc-cCCCChHHHHHHHHHHhcC
Confidence            21        01112468999999999 56789999999721     2344444443322 2334444444433332   


Q ss_pred             --ccHHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          248 --KTMALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       248 --~~~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                        ..+.+.++++.++.+.+.+.|+++.+
T Consensus       303 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~  330 (412)
T PTZ00433        303 PQEHLEQIVAKLEEGAMVLYNHIGECIG  330 (412)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence              23456667778888888888887543

>PRK09148 aminotransferase; Validated

Probab=99.93  E-value=7.8e-24  Score=189.98  Aligned_cols=250  Identities=16%  Similarity=0.138  Sum_probs=166.3

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----CceEEecch-HHHHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSG-MAALA   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG-~~ai~   84 (301)
                      .+++|+.++..++.  ++...... .. .........|.+. |.+. ++++.+++.+.+|.    ++.+++++| ++++.
T Consensus        31 ~~i~l~~~~p~~~~--~~~~~~~~-~~-~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~  106 (405)
T PRK09148         31 DIIDLGMGNPDLPT--PQHIVDKL-CE-TAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFA  106 (405)
T ss_pred             CeEEcCCCCCCCCC--CHHHHHHH-HH-HHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHH
Confidence            56788844444443  23222221 11 1111123456665 6655 88888888776553    325666666 58886


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----CHHHHHhhc---CCCceEEEEeCCCCCccccc
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAI---GPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l---~~~~~~v~i~~~~np~G~~~  156 (301)
                       ++..++++||+|++++|.|+.+.    ..+...|+++..++.+    ..+++++.+   .++++++++++|+||||.+.
T Consensus       107 ~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~  182 (405)
T PRK09148        107 NMAQAITAPGDVILCPNPSYPIHA----FGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVA  182 (405)
T ss_pred             HHHHHhcCCCCEEEEcCCCCcccH----HHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCC
Confidence             56667899999999999999986    4445678898888764    233444443   46789999999999999998


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCccccC-----cc----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       157 ~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                      +   +++|+++|+++|+++|+||+|....+..     ..    ..+..+++.||||.+ |.+|+|.||+++++ .+.+.+
T Consensus       183 s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~-~~pGlR~G~~v~~~-~~i~~l  260 (405)
T PRK09148        183 DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTF-SMAGWRMGFAVGNE-RLIAAL  260 (405)
T ss_pred             CHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEecccccc-CCcchheeeeeCCH-HHHHHH
Confidence            7   5779999999999999999997533211     11    123467899999999 66789999999864 566666


Q ss_pred             HHhhhhcCCCCCHHhHHHHHccc----ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          225 YFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .........+.+...+.++...+    +.+.+.++.+.++...+.+.|+++
T Consensus       261 ~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~  311 (405)
T PRK09148        261 TRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA  311 (405)
T ss_pred             HHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            65554434333343433333333    234556677788888888888774

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.93  E-value=5.6e-24  Score=189.31  Aligned_cols=251  Identities=18%  Similarity=0.146  Sum_probs=176.2

Q ss_pred             ccceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC--CCc-hHHHHHHHHHhhcCCCceEEecchHHHH-H
Q 022194            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNP-TRDALESLLAKLDKADRALCFTSGMAAL-A   84 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~~-~~~~l~~~l~~~~~~~~~i~~~sG~~ai-~   84 (301)
                      ....+++|+ +|||||+..+|.+.......-+. ...+..-++.  |.. ..+++|+.|++++|.++++++++|..|. .
T Consensus       100 ~~r~~l~Fs-SndYLGL~~~p~v~~a~~~ai~~-yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~  177 (476)
T PLN02955        100 RFKKLLLFS-GNDYLGLSSHPTISNAAANAAKE-YGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMA  177 (476)
T ss_pred             CCceEEEee-ccCccCCCCCHHHHHHHHHHHHH-cCCCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHHHHH
Confidence            346899999 99999999999988664332110 0111112222  543 3789999999999999999999998665 3


Q ss_pred             HHHhc--------------cCCCCeEEEcCCCCccHHHHHhhhcccC-CcEEEEecCCCHHHHHhhcC---CCceEEEEe
Q 022194           85 AVTHL--------------LGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTCDLDEVASAIG---PWTKLVWVE  146 (301)
Q Consensus        85 ~~~~~--------------~~~g~~Vlv~~~~y~~~~~~~~~~~~~~-g~~~~~~~~~d~~~l~~~l~---~~~~~v~i~  146 (301)
                      ++..+              ..+++.|+.....|.+..... ...+.. +.++..+..+|+++++++++   .+.++|+++
T Consensus       178 ~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~-~ls~~~~~a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~E  256 (476)
T PLN02955        178 AMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGV-RLAERQGNVEVFVYRHCDMYHLNSLLSSCKMKRKVVVTD  256 (476)
T ss_pred             HHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHH-HhccccCCceEEEeCCCCHHHHHHHHHhCCCCceEEEEe
Confidence            44333              134556666656666665433 223332 57888888999999998885   346788888


Q ss_pred             CCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC---------ccCCCCcEEEecccccccCCCCceeeEEEEcc
Q 022194          147 SPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (301)
Q Consensus       147 ~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~  217 (301)
                      ...++.|.+.|+++|.++|++||+++|+||+|+.+.++.         ......|++++||+|+++.    ++|++++++
T Consensus       257 gV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~----~GGfi~gs~  332 (476)
T PLN02955        257 SLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGC----HGGFIACSK  332 (476)
T ss_pred             CCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhc----cCceeecHH
Confidence            999999999999999999999999999999999776643         1123578999999999954    468888775


Q ss_pred             hhHHHHHHHhhhh--cCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHH
Q 022194          218 ERLAKELYFLQNA--EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEF  267 (301)
Q Consensus       218 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~  267 (301)
                       .+.+.+......  ++..+++..+.+++.+++.+   .+++++++++.+++++.
T Consensus       333 -~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~  386 (476)
T PLN02955        333 -KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL  386 (476)
T ss_pred             -HHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence             455655443322  33455555555555555443   45678888888888774

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.93  E-value=2.9e-24  Score=192.81  Aligned_cols=250  Identities=20%  Similarity=0.172  Sum_probs=170.4

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccC--CCC-chHHHHHHHHHhhcCCCceEEecchHHHHH-HH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTR--SGN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~--~g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~   86 (301)
                      .++++|+ +|||+|+..+|.+.......-+..... ..-++  +|. +...++++.+++++|.++++++++|++|+. ++
T Consensus        45 ~~~~~~~-sn~ylgl~~~p~v~~a~~~~~~~~~~~-~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai  122 (402)
T TIGR01821        45 KDVTVWC-SNDYLGMGQHPEVLQAMHETLDKYGAG-AGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATL  122 (402)
T ss_pred             eeEEEeE-ccCcCCCCCCHHHHHHHHHHHHHcCCC-CcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHH
Confidence            4588999 999999999998776543321111000 01112  243 458999999999999889999999998875 44


Q ss_pred             HhccC--CCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC----CCceEEEEeCCCCCccccccHHH
Q 022194           87 THLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRK  160 (301)
Q Consensus        87 ~~~~~--~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~~~np~G~~~~l~~  160 (301)
                      ..+.+  +++.|+.....|....    ..+...++++..++..|.+++++.++    +++++|++++++||+|.+.|+++
T Consensus       123 ~~l~~~~~~~~v~~~~~~h~s~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~  198 (402)
T TIGR01821       123 ATLAKIIPGCVIFSDELNHASMI----EGIRHSGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEE  198 (402)
T ss_pred             HHhhCCCCCCEEEEcchHhHHHH----HHHHHcCCeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHH
Confidence            44443  5666655444444333    22345567776776677877777775    36789999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCccccCc---------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh--
Q 022194          161 IAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--  229 (301)
Q Consensus       161 l~~l~~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~--  229 (301)
                      |.++|+++|+++|+||+|+.|.+...         .....|++++|++|+++++    +|++++++ .+.+.+.....  
T Consensus       199 i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~----GG~i~~~~-~~~~~l~~~~~~~  273 (402)
T TIGR01821       199 ICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV----GGYIAASR-KLIDAIRSYAPGF  273 (402)
T ss_pred             HHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccC----CceeecCH-HHHHHHHHhCcCc
Confidence            99999999999999999986544211         1123589999999999643    47777664 45555443222  


Q ss_pred             hcCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhC
Q 022194          230 AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+..+.++..++++..+++.+   .+..+++.++.+++.+.|+++
T Consensus       274 ~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (402)
T TIGR01821       274 IFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL  318 (402)
T ss_pred             eecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            123445666666665555543   344556667888899988864

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.93  E-value=3.8e-24  Score=191.87  Aligned_cols=249  Identities=17%  Similarity=0.173  Sum_probs=176.4

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccC----CCCch-HHHHHHHHHhhcCCCceEEecchHHHHH-
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTR----SGNPT-RDALESLLAKLDKADRALCFTSGMAALA-   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~----~g~~~-~~~l~~~l~~~~~~~~~i~~~sG~~ai~-   84 (301)
                      ..+++|+ +++|+|..++|.+.......-.   ...+.+..    .|.+. +++++++++++++.++.+++++|++++. 
T Consensus        42 ~~~i~l~-~~~~~~~~~~~~i~~a~~~~~~---~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~  117 (397)
T PRK06939         42 KEVINFC-ANNYLGLANHPELIAAAKAALD---SHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGG  117 (397)
T ss_pred             CeEEEee-ccCccccCCCHHHHHHHHHHHH---HcCCCCcccccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHH
Confidence            3689998 6788898888877654322211   11222221    25554 8999999999999888999999987774 


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC------CceEEEEeCCCCCccccccH
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICDI  158 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~l  158 (301)
                      ++..++++||+|++++|.|+++..    .+...+.++..++..|++++++.+++      ++++|++.+.+|++|...++
T Consensus       118 ~~~~l~~~gd~vi~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~  193 (397)
T PRK06939        118 LFETLLGKEDAIISDALNHASIID----GVRLCKAKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPL  193 (397)
T ss_pred             HHHHhCCCCCEEEEEhhhhHHHHH----HHHhcCCceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCH
Confidence            666789999999999999998863    33455667777777788888887753      67788888889999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCccccC---------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh
Q 022194          159 RKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (301)
Q Consensus       159 ~~l~~l~~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~  229 (301)
                      ++|+++|+++|+++|+||+|+.+....         ....+.|++++|+||+++|+   ++|++++++ .+.+.+.....
T Consensus       194 ~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~---r~G~v~~~~-~~~~~l~~~~~  269 (397)
T PRK06939        194 PEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGA---SGGYTAGRK-EVIDWLRQRSR  269 (397)
T ss_pred             HHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCcc---CceEEEeCH-HHHHHHHHhCc
Confidence            999999999999999999996543321         11124689999999999543   579998875 45554443222


Q ss_pred             --hcCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhC
Q 022194          230 --AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       230 --~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~  271 (301)
                        ..+.+..+..+.++..+++.+   .+.++++.++.+.+.+.|+++
T Consensus       270 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  316 (397)
T PRK06939        270 PYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA  316 (397)
T ss_pred             cccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence              122333344344333333332   455677888888888888764

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.93  E-value=2.7e-24  Score=193.48  Aligned_cols=251  Identities=19%  Similarity=0.147  Sum_probs=172.3

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCc-cccCCCCc-hHHHHHHHHHhhcCCCceEEecchHHHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPY-DYTRSGNP-TRDALESLLAKLDKADRALCFTSGMAALA-AVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~-~y~~~g~~-~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~   87 (301)
                      ..+++|+ +|||+|+.++|.+.......-+......- ....+|.. ...+|++.+++++|.++.+++++|++|+. ++.
T Consensus        46 ~~~~~~~-sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~  124 (410)
T PRK13392         46 RRVTIWC-SNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALS  124 (410)
T ss_pred             ceEEEEE-CCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHH
Confidence            3578999 89999999999877654322111000000 01112443 47899999999999999999999997764 444


Q ss_pred             hcc--CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC----CCceEEEEeCCCCCccccccHHHH
Q 022194           88 HLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKI  161 (301)
Q Consensus        88 ~~~--~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~~~np~G~~~~l~~l  161 (301)
                      .+.  .+|+.|++....|.++.    ..+...|.++..++.+|.+.+++.+.    +++++|++++|+||+|.+.|+++|
T Consensus       125 ~l~~~~~g~~vi~~~~~h~s~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i  200 (410)
T PRK13392        125 TLGKLLPGCVILSDALNHASMI----EGIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAI  200 (410)
T ss_pred             HHhcCCCCCEEEEehhhhHHHH----HHHHHcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHH
Confidence            343  47888887666665554    33455677777777667766666553    578999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCcCCccccCc---------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh--
Q 022194          162 AEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--  230 (301)
Q Consensus       162 ~~l~~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~--  230 (301)
                      .++|+++|+++|+||+|+.+.+...         .....|+++.|+||+|+++    +|+++++ +.+.+.+......  
T Consensus       201 ~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~----GG~~~~~-~~~~~~l~~~~~~~~  275 (410)
T PRK13392        201 CDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL----GGYIAAS-ADLIDFVRSFAPGFI  275 (410)
T ss_pred             HHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc----cchhhcC-HHHHHHHHHhCcchh
Confidence            9999999999999999986654211         1123579999999999653    3777765 4555655443332  


Q ss_pred             cCCCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          231 EGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+...++..++++..+++.   ..+..+++.++++++.+.|++.
T Consensus       276 ~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~  319 (410)
T PRK13392        276 FTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN  319 (410)
T ss_pred             ccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            2233444555554444443   3445567788888899988864

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.92  E-value=1e-23  Score=189.26  Aligned_cols=222  Identities=19%  Similarity=0.186  Sum_probs=151.8

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhc---CCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLD---KADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~---~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      ..|.+. |.+. ++++.+++.+..   ..+++++++++++++. ++..++++||+|++++|.|..+.    ..++..|++
T Consensus        67 ~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~----~~~~~~g~~  142 (401)
T TIGR01264        67 NGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYE----TLAESMGIE  142 (401)
T ss_pred             CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHH----HHHHHcCCE
Confidence            346544 5544 555665555421   2234444445568885 66678899999999999998886    556778888


Q ss_pred             EEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----c
Q 022194          121 VKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P  186 (301)
Q Consensus       121 ~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----~  186 (301)
                      +..++.+       |++.+++.+++++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....+..    +
T Consensus       143 v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~  222 (401)
T TIGR01264       143 VKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEP  222 (401)
T ss_pred             EEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCccccc
Confidence            8887642       688999888888899999999999999975   8889999999999999999997543321    1


Q ss_pred             ---c-CCCCcEEEecccccccCCCCceeeEEEEcch-----hHHHHHHHhhhhcCCCCCHHhHHHHHccc-----ccHHH
Q 022194          187 ---L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----RLAKELYFLQNAEGSGLAPFDCWICLRGV-----KTMAL  252 (301)
Q Consensus       187 ---~-~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~  252 (301)
                         . .....+++.||||.| +.+|+|.||++++++     .+.+.+..... .....+...+.++...+     +.+.+
T Consensus       223 ~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~l~~  300 (401)
T TIGR01264       223 LASLSSTVPILSCGGLAKRW-LVPGWRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRTPQEYFDG  300 (401)
T ss_pred             HHHcCCCCcEEEEccCcccC-CCccceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhCcHHHHHH
Confidence               1 112368999999998 567899999998742     12222222221 12223333333333322     33556


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCc
Q 022194          253 RVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      .++++.++.+.+.+.|++++++
T Consensus       301 ~~~~~~~~r~~l~~~L~~~~~~  322 (401)
T TIGR01264       301 TLSVLESNAMLCYGALAAVPGL  322 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC
Confidence            6677888888899999887553

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.92  E-value=4.3e-24  Score=190.54  Aligned_cols=261  Identities=17%  Similarity=0.162  Sum_probs=179.9

Q ss_pred             CCccceeeecCCCCCCCCccccCeeecceeecCCCCCCC---CccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHH
Q 022194            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENG---PYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL   83 (301)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~---~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai   83 (301)
                      +..+-.++++. .-.-+|+..+....+..-.... ....   .+.......+..+++++.+++++|.++++++++|++++
T Consensus        14 ~~~~~~~~~~~-~~~~~~p~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~   91 (387)
T PRK09331         14 RRLEEEFINLD-PIQRGGILTPEARKALIEYGDG-YSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGK   91 (387)
T ss_pred             ccccccccccC-hhhcCCCCCHHHHHHHHHHHhc-cCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHH
Confidence            44556677766 4444665544443332211110 0000   11111112356899999999999999888888888888


Q ss_pred             H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-------CCHHHHHhhcCC-------CceEEEEeCC
Q 022194           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGP-------WTKLVWVESP  148 (301)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~-------~~~~v~i~~~  148 (301)
                      . ++..++++||+|+++.+.|.+...    .++..|++++.++.       .|++++++.+++       ++++|+++++
T Consensus        92 ~~al~~l~~~gd~Vlv~~~~h~s~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~  167 (387)
T PRK09331         92 FAVMHSLCKKGDYVVLDGLAHYTSYV----AAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHV  167 (387)
T ss_pred             HHHHHHhcCCCCEEEECCCchHHHHH----HHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECC
Confidence            5 677788999999999998887753    34667889998876       278999988852       6899999999


Q ss_pred             CCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh
Q 022194          149 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (301)
Q Consensus       149 ~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~  227 (301)
                      +|++|...|+++|+++||++|+++++|++|+.|..+ .....++|++++|+||++++|+  ++|+++++++ +.+.+...
T Consensus       168 ~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~--~~G~l~~~~~-~i~~~~~~  244 (387)
T PRK09331        168 DGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASA--PSGVLATTEE-YADKVFRT  244 (387)
T ss_pred             CCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCC--CEEEEEECHH-HHhhcccc
Confidence            999999999999999999999999999999988754 3445689999999999997765  4689988754 43433222


Q ss_pred             hh--------hcCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhCCCcce
Q 022194          228 QN--------AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKK  276 (301)
Q Consensus       228 ~~--------~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~v~~  276 (301)
                      ..        ..+.+..+...+.++.+++.+   .++.++..++++++++.|++++++..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~~  304 (387)
T PRK09331        245 SRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFKQ  304 (387)
T ss_pred             cCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            11        112223222233333333332   23456667888899999998876643

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.92  E-value=2.1e-23  Score=186.44  Aligned_cols=218  Identities=14%  Similarity=0.189  Sum_probs=154.6

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC----CceEEe-cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA----DRALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~-~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      .|.+. |.+. ++++.+++...++.    ++.+++ +++++++. ++..++++||+|++++|.|.++.    ..++..|.
T Consensus        62 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g~  137 (391)
T PRK07309         62 HYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYE----PIVNLVGA  137 (391)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcCC
Confidence            36554 5555 77777777766553    234555 44568885 66677899999999999999986    55566788


Q ss_pred             EEEEecCC------CHHHHHhhcCC---CceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC--
Q 022194          120 VVKRVNTC------DLDEVASAIGP---WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--  185 (301)
Q Consensus       120 ~~~~~~~~------d~~~l~~~l~~---~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~--  185 (301)
                      +++.++.+      |++.++++++.   +++++++++|+||||.+.+   +++|+++|++||+++|+|++|....+..  
T Consensus       138 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~  217 (391)
T PRK07309        138 EIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEP  217 (391)
T ss_pred             EEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCC
Confidence            88888753      67889888863   6899999999999999875   8889999999999999999997544311  


Q ss_pred             --c-c--CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc----HHHHHHH
Q 022194          186 --P-L--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEK  256 (301)
Q Consensus       186 --~-~--~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~  256 (301)
                        + .  ..+..+++.|+||.+ |.+|+|.||++++++ +.+.+...........+...+.++...++.    ....++.
T Consensus       218 ~~~~~~~~~~~~i~~~S~SK~~-g~~GlRvG~~v~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  295 (391)
T PRK07309        218 HVSIAEYLPDQTILINGLSKSH-AMTGWRIGLIFAPAE-FTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKE  295 (391)
T ss_pred             CCCHHHhccCCEEEEecChhhc-cCccceeEEEEeCHH-HHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHH
Confidence              1 1  124569999999999 567899999998855 545554443333333444444444444432    2334456


Q ss_pred             HHHHHHHHHHHHHhC
Q 022194          257 QQDNAQKIAEFLASH  271 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~  271 (301)
                      +.++++.+.+.|+++
T Consensus       296 ~~~~~~~~~~~l~~~  310 (391)
T PRK07309        296 YIKRRDYIIEKMTDL  310 (391)
T ss_pred             HHHHHHHHHHHHHHC
Confidence            677777788888765

>PRK07777 aminotransferase; Validated

Probab=99.92  E-value=1.3e-23  Score=187.69  Aligned_cols=219  Identities=22%  Similarity=0.206  Sum_probs=155.3

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC-----ceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD-----RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~-----~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|.+. |.+. ++++.+++.+.+|.+     +.+++++|++++. ++..++++||+|++..|.|+.+.    ..++..|
T Consensus        55 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~----~~~~~~g  130 (387)
T PRK07777         55 NQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYA----AVIAMAG  130 (387)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHCC
Confidence            456654 6655 777777777777653     3444555578885 66778899999999999999886    4445567


Q ss_pred             cEEEEecC--------CCHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC--
Q 022194          119 VVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--  185 (301)
Q Consensus       119 ~~~~~~~~--------~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~--  185 (301)
                      .+++.++.        .|++++++.+.+++++|++++|+||||.+.+   +++|+++|+++++++|+||+|....+..  
T Consensus       131 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~  210 (387)
T PRK07777        131 AHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGAR  210 (387)
T ss_pred             CEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCC
Confidence            77766654        2678999988888999999999999999864   8889999999999999999997533211  


Q ss_pred             -------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHH---HHc-ccccHHHHH
Q 022194          186 -------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI---CLR-GVKTMALRV  254 (301)
Q Consensus       186 -------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~l~~~~~~~  254 (301)
                             +...+.++++.|+||.| |.+|+|.|++++++ .+.+.+...........+...+.+   ++. ..+.+.+.+
T Consensus       211 ~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  288 (387)
T PRK07777        211 HLPLATLPGMRERTVTISSAAKTF-NVTGWKIGWACGPA-PLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALR  288 (387)
T ss_pred             cccHhhCCCCcCcEEEEeechhhc-cCcCceeEEEecCH-HHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHH
Confidence                   11135789999999999 55689999999875 455555444433232222222222   222 223345566


Q ss_pred             HHHHHHHHHHHHHHHhC
Q 022194          255 EKQQDNAQKIAEFLASH  271 (301)
Q Consensus       255 ~~~~~~~~~l~~~l~~~  271 (301)
                      +.+.++++.+.+.|+++
T Consensus       289 ~~~~~~~~~l~~~L~~~  305 (387)
T PRK07777        289 DSLQAKRDRLAAGLAEA  305 (387)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            77888888899998875

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=3.2e-24  Score=190.85  Aligned_cols=245  Identities=16%  Similarity=0.213  Sum_probs=172.5

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecchH-HHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~-~~~   87 (301)
                      ...++|+.+.+++++.  |.+.... ....    ....|   +.+...++++.++++++.+ +.+++++|+ +++. ++.
T Consensus        52 ~~~i~l~~n~~p~~~~--~~v~~a~-~~~~----~~~~Y---p~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~  121 (380)
T PLN03026         52 EDIVKLDANENPYGPP--PEVLEAL-GNMK----FPYVY---PDPESRRLRAALAEDSGLESENILVGCGADELIDLLMR  121 (380)
T ss_pred             cceEEccCCCCCCCCC--HHHHHHH-HhhH----hhccC---CCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHH
Confidence            4678888544566644  3333321 1100    11123   2334678999999999865 566777775 8886 555


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhc-CCCceEEEEeCCCCCccccccHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKI  161 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l-~~~~~~v~i~~~~np~G~~~~l~~l  161 (301)
                      .++++||+|++++|.|+.+.    ..++..|.+++.++.+     |++++++++ .+++++|++++|+||||.+.+.+++
T Consensus       122 ~~~~~gd~Vlv~~P~y~~y~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l  197 (380)
T PLN03026        122 CVLDPGDKIIDCPPTFGMYV----FDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDL  197 (380)
T ss_pred             HhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHH
Confidence            67899999999999998775    4456678888888753     688999888 6789999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCcCCcccc-----CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCC
Q 022194          162 AEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (301)
Q Consensus       162 ~~l~~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
                      .++++.. +++|+||+|......     ........+++.||||.| |.+|+|.|++++++ .+.+.+.....  .+..+
T Consensus       198 ~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~-glaGlRiGy~~~~~-~~i~~l~~~~~--~~~~~  272 (380)
T PLN03026        198 LKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRA-GLAGLRVGYGAFPL-SIIEYLWRAKQ--PYNVS  272 (380)
T ss_pred             HHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhh-cCccccceeeecCH-HHHHHHHHhcC--CCCCC
Confidence            9999765 999999998643221     111335689999999999 77899999999875 45455444433  23455


Q ss_pred             HHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          237 PFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       237 ~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      ...+.++...++   .+.+.++.+.++++++.+.|++++.+
T Consensus       273 ~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  313 (380)
T PLN03026        273 VAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFL  313 (380)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            555555544443   34556677788888888999876543

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.92  E-value=6.9e-24  Score=187.72  Aligned_cols=251  Identities=22%  Similarity=0.230  Sum_probs=177.3

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCcccc-CCCC-chHHHHHHHHHhhcCCCceEEecchHHHH-HHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGN-PTRDALESLLAKLDKADRALCFTSGMAAL-AAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~-~~g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai-~~~~   87 (301)
                      .++++|+ +++++|...+|.+.......-.........+. ..|. +...++++.++++++.++.+++++|++++ .++.
T Consensus        16 ~~~id~~-~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l~   94 (360)
T TIGR00858        16 RRLLNFS-SNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGVIS   94 (360)
T ss_pred             ceEEecc-cCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHH
Confidence            4799999 56889987777666553322110000101111 1244 34888999999999988899999998665 4666


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC----CceEEEEeCCCCCccccccHHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKIAE  163 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~----~~~~v~i~~~~np~G~~~~l~~l~~  163 (301)
                      .++++||+|++++|.|..+.    ..++..|.+++.++..|++++++.++.    ++++|++.+++|++|...++++|.+
T Consensus        95 ~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~  170 (360)
T TIGR00858        95 ALVGKGDLILSDALNHASLI----DGCRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVA  170 (360)
T ss_pred             HhCCCCCEEEEEccccHHHH----HHHHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHH
Confidence            77899999999999998886    344566788888888889999988863    4688888999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCccccC----------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh--c
Q 022194          164 MAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--E  231 (301)
Q Consensus       164 l~~~~~~~li~D~~~~~~~~~~----------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~--~  231 (301)
                      +|+++|+++|+||+|+.+.+..          ....+.+++++|+||++++ +   +|++++++ .+.+.+......  .
T Consensus       171 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~---gG~~~~~~-~~~~~~~~~~~~~~~  245 (360)
T TIGR00858       171 LAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS-Y---GAYVAGSQ-ALIDYLINRARTLIF  245 (360)
T ss_pred             HHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc-c---CcEEEcCH-HHHHHHHHhCcccee
Confidence            9999999999999998654321          1123678999999999954 3   37887764 455544322221  2


Q ss_pred             CCCCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          232 GSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       232 ~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +...++....++..+++   ...+.++++.++.+++.+.|+++
T Consensus       246 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  288 (360)
T TIGR00858       246 STALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEAL  288 (360)
T ss_pred             cCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence            23344444444444443   23456678888888999999875

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK09082 methionine aminotransferase; Validated

Probab=99.92  E-value=3.4e-24  Score=191.33  Aligned_cols=219  Identities=20%  Similarity=0.217  Sum_probs=161.1

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC----ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD----RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~----~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|.+. |.+. ++++.+++.+.++.+    +.+++++| ++++. ++..++++||+|++++|.|..+.    ..++..|
T Consensus        61 ~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~----~~~~~~g  136 (386)
T PRK09082         61 NQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYA----PAIELAG  136 (386)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhH----HHHHHcC
Confidence            456554 6665 888999998887753    24555555 68885 66677899999999999999886    4445678


Q ss_pred             cEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCccccC----
Q 022194          119 VVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSR----  185 (301)
Q Consensus       119 ~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~~~~----  185 (301)
                      .++..++.+      |++++++.+++++++|++++|+||||.+.   ++++|+++|+++|+++|+||+|....+..    
T Consensus       137 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~  216 (386)
T PRK09082        137 GRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHA  216 (386)
T ss_pred             CEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCC
Confidence            888888864      67899999988899999999999999984   58889999999999999999986543321    


Q ss_pred             -----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc----ccHHHHHHH
Q 022194          186 -----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEK  256 (301)
Q Consensus       186 -----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~  256 (301)
                           ....+.+++++||||.+ |.+|+|.|++++++ .+.+.+...........+...+.++...+    +++.+.++.
T Consensus       217 s~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~iv~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  294 (386)
T PRK09082        217 SVLRHPELRERAFVVSSFGKTY-HVTGWKVGYCVAPA-ALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAF  294 (386)
T ss_pred             ChhhCcCccCcEEEEeechhhc-cchhhhhhhhhCCH-HHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHH
Confidence                 11134679999999999 56789999999874 56565555544334344444444333333    234555566


Q ss_pred             HHHHHHHHHHHHHhC
Q 022194          257 QQDNAQKIAEFLASH  271 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~  271 (301)
                      +.++...+.+.|++.
T Consensus       295 ~~~~~~~~~~~L~~~  309 (386)
T PRK09082        295 YQAKRDRFRAALANS  309 (386)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            778888888888763

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.92  E-value=1.6e-23  Score=187.99  Aligned_cols=252  Identities=17%  Similarity=0.213  Sum_probs=173.5

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHH-
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALA-   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~-   84 (301)
                      .+++|+.+..+++.  +|.+......   ........|.+. |.+. ++++++++++.+|.+   +.+++++| ++|+. 
T Consensus        34 ~~i~l~~g~p~~~~--~~~~~~~~~~---~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~  108 (402)
T PRK06107         34 SIVDLTVGEPDFDT--PDHIKQAAVA---AIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFL  108 (402)
T ss_pred             CEEEcCCCCCCCCC--CHHHHHHHHH---HHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence            56788744444442  2333222111   111123457766 7766 889999998887653   44666666 58886 


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                      ++..++++||.|++++|.|..+...    +...+..+..++.+       |++.+++.+.+++++|++++|+||||.+.+
T Consensus       109 ~~~~~~~~gd~vl~~~p~y~~y~~~----~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s  184 (402)
T PRK06107        109 ALMATLEAGDEVIIPAPYWVSYPDM----VLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYS  184 (402)
T ss_pred             HHHHhcCCCCEEEEecCCCcCHHHH----HHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcC
Confidence            5566789999999999999888633    33344555555432       578899988888999999999999999985


Q ss_pred             ---HHHHHHHHHHc-CCEEEEeCCcCCccccC----------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          158 ---IRKIAEMAHAH-GALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       158 ---l~~l~~l~~~~-~~~li~D~~~~~~~~~~----------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                         +++|+++|+++ ++++|+||+|+...+..          +...+..++++||||.| +.+|+|.||+++++ .+.+.
T Consensus       185 ~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~~~~~-~~~~~  262 (402)
T PRK06107        185 RAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTY-AMTGWRIGYAAGPA-DLIAA  262 (402)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhh-cCcccceeeeecCH-HHHHH
Confidence               67788889998 99999999996432211          11124679999999999 66789999999875 56666


Q ss_pred             HHHhhhhcCCCCCHHhHHHHHccc----ccHHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          224 LYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      +...........+...+.++...+    +.+.+.++.+.++.+.+.+.|++++++
T Consensus       263 ~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~  317 (402)
T PRK06107        263 INKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGL  317 (402)
T ss_pred             HHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            666665555555655555554443    235566677788888888999876443

>PRK07550 hypothetical protein; Provisional

Probab=99.92  E-value=2.5e-23  Score=185.81  Aligned_cols=221  Identities=17%  Similarity=0.167  Sum_probs=160.7

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..|.+. |.+. ++++.+++.+..|..   +.+++++| ++++. ++..++++||+|++++|.|..+.    ..++..|+
T Consensus        61 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~  136 (386)
T PRK07550         61 HLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHK----MWLDMLGI  136 (386)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCC
Confidence            456555 7776 788888888776642   55666666 58886 55567899999999999998886    45567889


Q ss_pred             EEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----
Q 022194          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----  185 (301)
Q Consensus       120 ~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----  185 (301)
                      +++.++.+       |++++++.+++++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+......    
T Consensus       137 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~  216 (386)
T PRK07550        137 RPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPH  216 (386)
T ss_pred             EEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCc
Confidence            99888863       678899999888999999999999999976   7889999999999999999987432210    


Q ss_pred             -cc----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc----HHHHHHH
Q 022194          186 -PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEK  256 (301)
Q Consensus       186 -~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~  256 (301)
                       ..    .....+++.||||.+ |.+|+|.|++++++ .+.+.+...........+...+.++...+..    ..+.++.
T Consensus       217 ~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~i~~~~-~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~  294 (386)
T PRK07550        217 DLFADPDWDDTLVHLYSFSKSY-ALTGHRVGAVVASP-ARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAE  294 (386)
T ss_pred             chhhCCCccccEEEEecchhhc-cCcccceEeeecCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHH
Confidence             11    123468899999999 55678999999875 4555555444444444444444444444433    2344566


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 022194          257 QQDNAQKIAEFLASHPR  273 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~  273 (301)
                      +.++.+.+.+.|++++.
T Consensus       295 ~~~~~~~l~~~L~~~~~  311 (386)
T PRK07550        295 IARRRDAFRAVFARLPG  311 (386)
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            77778888888887644

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.92  E-value=1e-23  Score=189.45  Aligned_cols=250  Identities=20%  Similarity=0.164  Sum_probs=171.8

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC--CC-chHHHHHHHHHhhcCCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~   87 (301)
                      ..+++|+ +|||+|+..+|.+.......-+... .....++.  +. +...++++.++++++.+.+++++||++|+..++
T Consensus        45 ~~~~~~~-sn~ylgl~~~p~v~~a~~~~~~~~~-~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai  122 (406)
T PRK13393         45 REVTVWC-SNDYLGMGQHPAVLAAMHEALDTCG-AGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAAL  122 (406)
T ss_pred             ccEEEee-cccccCCCCCHHHHHHHHHHHHHcC-CCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHH
Confidence            4689999 9999999999977765433211111 01111222  43 358999999999999999999999998875444


Q ss_pred             h-ccC--CCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC----CCceEEEEeCCCCCccccccHHH
Q 022194           88 H-LLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRK  160 (301)
Q Consensus        88 ~-~~~--~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~~~np~G~~~~l~~  160 (301)
                      . +.+  +||.|+.....|..+...+    ...+.+++.++..|.+++++.++    +++++|++++++|++|.+.|+++
T Consensus       123 ~~l~~~~~g~~I~~~~~~H~s~~~~~----~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~  198 (406)
T PRK13393        123 STLGSRLPGCVILSDELNHASMIEGI----RHSRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAE  198 (406)
T ss_pred             HHhhcCCCCCEEEEccchhHHHHHHH----HHcCCeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHH
Confidence            3 544  6776666555655554333    34566777777778888777664    36789999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCccccCc---------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh-
Q 022194          161 IAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-  230 (301)
Q Consensus       161 l~~l~~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~-  230 (301)
                      |.++|+++|+++|+||+|+.|.+...         .....|++++|++|.++.+    +|+++++ +.+.+.+...... 
T Consensus       199 i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~----GG~~~~~-~~~~~~l~~~~~~~  273 (406)
T PRK13393        199 ICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM----GGYITGS-AALCDFIRSFASGF  273 (406)
T ss_pred             HHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc----CceeeCC-HHHHHHHHHhCcCc
Confidence            99999999999999999986554311         1122578889999999643    4777765 4555554443322 


Q ss_pred             -cCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhC
Q 022194          231 -EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       231 -~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~  271 (301)
                       .+.+.++..++++..+++.+   ...++++.++.+++.+.|++.
T Consensus       274 ~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (406)
T PRK13393        274 IFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA  318 (406)
T ss_pred             eecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence             23455665555555555443   233456677888889988764

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.92  E-value=1.5e-23  Score=188.57  Aligned_cols=221  Identities=15%  Similarity=0.163  Sum_probs=147.7

Q ss_pred             CccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecchH-HHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           46 PYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG~-~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ...|.+. |.+. ++++.+++.+..|.+   +.+++++|+ +++.++..++++||+|++++|+|+.+.    ..++..|.
T Consensus        69 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~~~~~gd~V~v~~P~Y~~~~----~~~~~~g~  144 (409)
T PRK07590         69 FRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILDIFGPDNTIAVTDPVYPVYV----DTNVMAGR  144 (409)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcCC
Confidence            3456554 6665 777777776655432   567777775 888777778899999999999999997    44455565


Q ss_pred             E-----------EEEecCCCHHHHHhhc-CCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcccc
Q 022194          120 V-----------VKRVNTCDLDEVASAI-GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS  184 (301)
Q Consensus       120 ~-----------~~~~~~~d~~~l~~~l-~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~  184 (301)
                      +           ++.++.+..+.+...+ .+++++|++++|+||||.+.+   +++|+++|++||++||+||+|....+.
T Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~  224 (409)
T PRK07590        145 TGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISD  224 (409)
T ss_pred             cccccccccccceeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccC
Confidence            4           6677654211222112 257899999999999999976   677888999999999999999753321


Q ss_pred             C----cc----C-CCCcEEEecccccccCCCCceeeEEEEcchhHHH-----------HHHHhhhhcCCCCCHHhHHHHH
Q 022194          185 R----PL----E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-----------ELYFLQNAEGSGLAPFDCWICL  244 (301)
Q Consensus       185 ~----~~----~-~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~  244 (301)
                      .    +.    . .+..++++||||.+ |.+|+|.||++++++.+..           .............+...+.++.
T Consensus       225 ~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~  303 (409)
T PRK07590        225 PSLPHSIYEIEGARECAIEFRSFSKTA-GFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAE  303 (409)
T ss_pred             CCCCcchhhCCCcccceEEEecCcccc-CCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHH
Confidence            1    11    1 13468899999999 6678999999997654421           1111111111234444444433


Q ss_pred             ccc-----ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          245 RGV-----KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       245 ~~l-----~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..+     +++.+.++.+.++++.+.+.|+.+
T Consensus       304 ~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  335 (409)
T PRK07590        304 AVYSPEGKAQIKELIDYYMENAKIIREGLESA  335 (409)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            322     234556677788888898999875

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=3e-24  Score=189.99  Aligned_cols=243  Identities=18%  Similarity=0.267  Sum_probs=167.8

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecch-HHHHH-HHHh
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTH   88 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~-~~~~   88 (301)
                      ..++|+...+.+|.  +|.+.......   ..  ...|.+  .....++++.++++++.+ +.+++++| ++++. ++..
T Consensus        30 ~~i~l~~n~~~~~~--~~~v~~a~~~~---~~--~~~~~p--~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~  100 (359)
T PRK03158         30 KIVKLASNENPYGP--SPKVKEAIAAH---LD--ELALYP--DGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRA  100 (359)
T ss_pred             ceEEecCCCCCCCC--CHHHHHHHHHH---HH--HhhcCC--CCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHH
Confidence            57888844445663  44443332111   11  122222  223677888888888765 55666666 58886 4556


Q ss_pred             ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 022194           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (301)
Q Consensus        89 ~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l  164 (301)
                      ++++||+|++++|.|+.+.    ..+...|.++..++.+    |++++++.++++++++++++|+||||.+.+.++|.++
T Consensus       101 ~~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~  176 (359)
T PRK03158        101 LLNPGTNTVMAEPTFSQYR----HNAIIEGAEVREVPLKDGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSF  176 (359)
T ss_pred             HhCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEEecCCCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence            7899999999999999886    4445678888888764    7889998888899999999999999999999998888


Q ss_pred             HHH--cCCEEEEeCCcCCccccC----c----cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCC
Q 022194          165 AHA--HGALLLVDNSIMSPVLSR----P----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (301)
Q Consensus       165 ~~~--~~~~li~D~~~~~~~~~~----~----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  234 (301)
                      ++.  +|+++|+||+|.......    .    ...+.++++.||||.+ |.+|+|.||+++++ .+.+.+.....  ...
T Consensus       177 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~v~~~-~~~~~~~~~~~--~~~  252 (359)
T PRK03158        177 LESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAY-GLAALRVGYGIASE-ELIEKLNIARP--PFN  252 (359)
T ss_pred             HHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhh-cCcchhhehhcCCH-HHHHHHHHhcC--CCC
Confidence            877  599999999997543321    1    1235689999999999 66789999999875 45555544433  234


Q ss_pred             CCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          235 LAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       235 ~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+...+.++...++.   +.+.++...++.+.+.+.|+++
T Consensus       253 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  292 (359)
T PRK03158        253 TTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY  292 (359)
T ss_pred             CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            555555555555443   3444455566667777777765

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.92  E-value=6.5e-24  Score=190.90  Aligned_cols=250  Identities=20%  Similarity=0.159  Sum_probs=170.7

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccC--CC-CchHHHHHHHHHhhcCCCceEEecchHHHHH-HH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTR--SG-NPTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~--~g-~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~   86 (301)
                      ..+++|+ +|||+|+..+|.+.......-+... .....++  +| .+...++++.++++++.++.+++++|+++.. ++
T Consensus        46 ~~~~~~~-s~dylgl~~~p~v~~a~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai  123 (407)
T PRK09064         46 REVTVWC-SNDYLGMGQHPKVIEAMIEALDRCG-AGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATL  123 (407)
T ss_pred             ceEEEEE-CCCCcCCCCCHHHHHHHHHHHHHcC-CCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHH
Confidence            5689999 9999999999987765432211110 1111122  23 3458999999999999888999999987764 44


Q ss_pred             HhccC--CCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC----CCceEEEEeCCCCCccccccHHH
Q 022194           87 THLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRK  160 (301)
Q Consensus        87 ~~~~~--~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~~~np~G~~~~l~~  160 (301)
                      ..+.+  +++.|+.....|.+...    .+...+.++..++..|++++++.++    +++++|++++++|++|.+.|+++
T Consensus       124 ~~l~~~~~~~~i~~~~~~h~s~~~----~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~  199 (407)
T PRK09064        124 STLAKLIPDCVIFSDELNHASMIE----GIRRSRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAE  199 (407)
T ss_pred             HHHhCCCCCCEEEEeCcchHHHHH----HHHHcCCcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHH
Confidence            44443  66655555444444332    2233456666677778888887775    46789999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCccccC---c------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh-
Q 022194          161 IAEMAHAHGALLLVDNSIMSPVLSR---P------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-  230 (301)
Q Consensus       161 l~~l~~~~~~~li~D~~~~~~~~~~---~------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~-  230 (301)
                      |.++|+++|+++|+||+|+.|.+..   .      .....|++++||||+|+. .   +|++++++ .+.+.+...... 
T Consensus       200 i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~---GG~~~~~~-~~~~~l~~~~~~~  274 (407)
T PRK09064        200 ICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGV-M---GGYIAGSA-ALVDAVRSYAPGF  274 (407)
T ss_pred             HHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhc-c---CceEecCH-HHHHHHHHhCccc
Confidence            9999999999999999998554321   0      112358999999999953 3   47777764 455544333221 


Q ss_pred             -cCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhC
Q 022194          231 -EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       231 -~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~  271 (301)
                       ...+.++..+++++..++.+   ...++++.++.+++.+.|++.
T Consensus       275 ~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  319 (407)
T PRK09064        275 IFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA  319 (407)
T ss_pred             cccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence             23445666666666665554   333577888888999999874

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.92  E-value=9.6e-24  Score=188.56  Aligned_cols=251  Identities=21%  Similarity=0.183  Sum_probs=176.1

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCCceEEecchHHHH-HHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKADRALCFTSGMAAL-AAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~~~i~~~sG~~ai-~~~~   87 (301)
                      ..+++|+ +++++|..++|.+.......-.........|... |.+. +++++++++++++.++.+++++|++++ .++.
T Consensus        33 ~~~id~~-~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~  111 (385)
T TIGR01825        33 KEVINLS-SNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLS  111 (385)
T ss_pred             ceEEEee-ccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHH
Confidence            5789998 6888999888877755432211011111223333 5554 999999999999988889999998776 4667


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC----CCceEEEEeCCCCCccccccHHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAE  163 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~~~np~G~~~~l~~l~~  163 (301)
                      .++++||.|++++|.|+.+...    +...+.++..++..|++++++.++    +++++|++++++|++|.+.|+++|.+
T Consensus       112 ~~~~~gd~vi~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~  187 (385)
T TIGR01825       112 ALLRKGDIVLSDELNHASIIDG----LRLTKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVE  187 (385)
T ss_pred             HhCCCCCEEEEEccccHHHHHH----HHhcCCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHH
Confidence            7899999999999999887533    334567777777678888887765    36889989999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCccccC---------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh--hcC
Q 022194          164 MAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG  232 (301)
Q Consensus       164 l~~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~--~~~  232 (301)
                      +|++||+++|+||+|+.+.+..         ....+.|+++.|+||+++++    +|+++.++ .+.+.+.....  ..+
T Consensus       188 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----gG~~~~~~-~~~~~~~~~~~~~~~~  262 (385)
T TIGR01825       188 LAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVV----GGYAAGHK-ELIEYLKNRARPFLFS  262 (385)
T ss_pred             HHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcC----CCEEecCH-HHHHHHHHhCcccccc
Confidence            9999999999999997654431         12246789999999999542    47777664 45554443322  122


Q ss_pred             CCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhC
Q 022194          233 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       233 ~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ...++...+++..+++.+   .+..++..++.+++.+.|++.
T Consensus       263 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  304 (385)
T TIGR01825       263 TAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL  304 (385)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            233444444444444332   345566777888888888764

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.92  E-value=1.1e-23  Score=184.47  Aligned_cols=232  Identities=19%  Similarity=0.222  Sum_probs=164.5

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEecchH-HHHHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGM-AALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~--~~i~~~sG~-~ai~~~~   87 (301)
                      ..+++|++..+++|...++.. ..             ...+|..+. .+|++.+++++|..  +.+++++|+ +++.++.
T Consensus        24 ~~~i~ls~Nenp~~~~~~~~~-~~-------------~~~~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~   88 (339)
T PRK06959         24 DAWLDLSTGINPHGYPVPPVP-AD-------------AWRRLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALP   88 (339)
T ss_pred             hhhceeccCCCCCCCCCCCCC-HH-------------HHHhCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHH
Confidence            467899877888887643321 10             122233444 89999999999884  577777775 8887667


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHH---HHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI---AEM  164 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l---~~l  164 (301)
                      .++++|+ |++++|+|..+.    ..++..|.+++.++.++ +.    +.+.++++++++|+||||.+.+.+++   ++.
T Consensus        89 ~~~~~g~-v~v~~P~y~~y~----~~~~~~g~~~~~v~~~~-~~----~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~  158 (339)
T PRK06959         89 ALLPRGR-VGIAPLAYSEYA----PAFARHGHRVVPLDEAA-DT----LPAALTHLIVVNPNNPTAERLPAARLLRWHAQ  158 (339)
T ss_pred             HhcCCCe-EEEcCCCcHHHH----HHHHHCCCEEEeecccc-hh----ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence            7788876 888999999986    55667889998888654 22    33456789999999999999875554   455


Q ss_pred             HHHcCCEEEEeCCcCCccccC----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhH
Q 022194          165 AHAHGALLLVDNSIMSPVLSR----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC  240 (301)
Q Consensus       165 ~~~~~~~li~D~~~~~~~~~~----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (301)
                      |+++++++|+||+|.......    .......+++.||||.| |.+|+|.||+++++ .+.+.+.....  .+..+...+
T Consensus       159 ~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~-gl~GlRiGy~v~~~-~li~~l~~~~~--~~~vs~~~q  234 (339)
T PRK06959        159 LAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFF-GLAGVRAGFVLAAP-ALLAALRDALG--AWTVSGPAR  234 (339)
T ss_pred             HHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhc-CCcchheEEEecCH-HHHHHHHHhcC--CCCCcHHHH
Confidence            668899999999998643211    11224469999999999 66789999999874 56665555443  333455555


Q ss_pred             HHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          241 WICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       241 ~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .++...++.   ..+.++++.++++++.+.|+++
T Consensus       235 ~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  268 (339)
T PRK06959        235 HAVRAAFADAAWQAAMRERLAADGARLAALLRAH  268 (339)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            555554433   3555677788888899999875

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.92  E-value=3.3e-23  Score=185.97  Aligned_cols=220  Identities=16%  Similarity=0.152  Sum_probs=153.8

Q ss_pred             CccccCC-CCch-HHHHHHHHHhhcCCC---c-eEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccC
Q 022194           46 PYDYTRS-GNPT-RDALESLLAKLDKAD---R-ALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (301)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~-~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~  117 (301)
                      ...|++. |.+. |+++.+++.+.++.+   + .+++++|+ +++. ++..++++||.|++++|+|+.+.    ..++..
T Consensus        64 ~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~  139 (403)
T PRK08636         64 THGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHS----QAFILA  139 (403)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHhc
Confidence            4567765 7766 888888888776632   3 57777775 8885 66778899999999999999986    556678


Q ss_pred             CcEEEEecCC-------CHH----HHHhhcC---CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 022194          118 GVVVKRVNTC-------DLD----EVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (301)
Q Consensus       118 g~~~~~~~~~-------d~~----~l~~~l~---~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~  180 (301)
                      |.+++.++.+       |++    .++++++   .+++++++++|+||||.+.+   +++|+++|++|+++||+||+|..
T Consensus       140 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~  219 (403)
T PRK08636        140 GGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYAD  219 (403)
T ss_pred             CCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchh
Confidence            8888887642       344    4556554   47899999999999999986   67799999999999999999875


Q ss_pred             ccccC-------ccC--CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHH---HHc-cc
Q 022194          181 PVLSR-------PLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI---CLR-GV  247 (301)
Q Consensus       181 ~~~~~-------~~~--~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~l  247 (301)
                      ..+..       ...  ....++++||||.+ |.+|+|.||++.++ .+.+.+.........+.+...+.+   ++. ..
T Consensus       220 l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~iv~~~-~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~  297 (403)
T PRK08636        220 ITFDGYKTPSILEVEGAKDVAVESYTLSKSY-NMAGWRVGFVVGNK-KLVGALKKIKSWLDYGMFTPIQVAATIALDGDQ  297 (403)
T ss_pred             hccCCCCCCChhcCCCccccEEEEEeccccc-CCccceeeeeeCCH-HHHHHHHHHHHHhcccCChHHHHHHHHHHhCcH
Confidence            43221       011  12457789999999 56789999998765 455555554443222222222222   222 12


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          248 KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.+.+.++.+.++.+.+.+.|++.
T Consensus       298 ~~~~~~~~~~~~~~~~l~~~L~~~  321 (403)
T PRK08636        298 SCVEEIRETYRKRRDVLIESFANA  321 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
Confidence            234555666777778888888774

>PRK07337 aminotransferase; Validated

Probab=99.92  E-value=2.4e-23  Score=186.08  Aligned_cols=219  Identities=22%  Similarity=0.223  Sum_probs=154.9

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..|.+. |.+. ++++.+++.+.+|.    +++++++++++++. ++..++++||+|++++|.|..+.    ..++..|.
T Consensus        61 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~  136 (388)
T PRK07337         61 TQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNR----HFVAAAEG  136 (388)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHcCC
Confidence            346554 5554 67777777766554    24444444468886 56667899999999999999886    33445677


Q ss_pred             EEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----
Q 022194          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----  185 (301)
Q Consensus       120 ~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----  185 (301)
                      +++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|+++|+++++++|+||+|....+..    
T Consensus       137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~  216 (388)
T PRK07337        137 RPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVS  216 (388)
T ss_pred             EEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcC
Confidence            77777653       678999999889999999999999999875   7889999999999999999987443321    


Q ss_pred             ccCC-CCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc-----ccHHHHHHHHHH
Q 022194          186 PLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-----KTMALRVEKQQD  259 (301)
Q Consensus       186 ~~~~-~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~  259 (301)
                      .... ...+++.|+||.+ |.+|+|.||+++++ .+.+.+...........+...+.++...+     +.+.+.++.+.+
T Consensus       217 ~~~~~~~vi~~~S~SK~~-~~~G~RiG~~~~~~-~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~  294 (388)
T PRK07337        217 ALSLGDDVITINSFSKYF-NMTGWRLGWLVVPE-ALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKR  294 (388)
T ss_pred             hhhccCCEEEEEechhhc-CCchhheeeeecCH-HHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            1112 2347899999999 56789999999875 45555555444433334444443433332     234555667777


Q ss_pred             HHHHHHHHHHhC
Q 022194          260 NAQKIAEFLASH  271 (301)
Q Consensus       260 ~~~~l~~~l~~~  271 (301)
                      +++.+.+.|+++
T Consensus       295 ~r~~~~~~L~~~  306 (388)
T PRK07337        295 RRDFIVPALESL  306 (388)
T ss_pred             HHHHHHHHHHhc
Confidence            888888888875

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.92  E-value=1.5e-23  Score=189.80  Aligned_cols=219  Identities=21%  Similarity=0.238  Sum_probs=164.3

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..|... |.+. ++++.+++....|..   +.|++|+|+ +|+. +...+++|||+|++.+|+|++..    .+++..|+
T Consensus       126 ~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~----~~~~~~g~  201 (459)
T COG1167         126 LQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGAL----QALEALGA  201 (459)
T ss_pred             hcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHH----HHHHHcCC
Confidence            455653 7665 778888887555432   577777776 8886 55667889999999999999997    67788999


Q ss_pred             EEEEecCC----CHHHHHhhcCC-CceEEEEe-CCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-----
Q 022194          120 VVKRVNTC----DLDEVASAIGP-WTKLVWVE-SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----  185 (301)
Q Consensus       120 ~~~~~~~~----d~~~l~~~l~~-~~~~v~i~-~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----  185 (301)
                      ++..++.+    |+|.+++.+++ ++++++++ +.+||||...+   -++|+++|++||++||+||.|+...+..     
T Consensus       202 ~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~  281 (459)
T COG1167         202 RVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPP  281 (459)
T ss_pred             cEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCC
Confidence            99999987    89999999985 78988876 77899999987   4569999999999999999998654431     


Q ss_pred             ---ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHH---Hc-c--cccHHHHHHH
Q 022194          186 ---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC---LR-G--VKTMALRVEK  256 (301)
Q Consensus       186 ---~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~--l~~~~~~~~~  256 (301)
                         ....+.+++++||||.+.  ||+|.||+++++ .+.+.+...........+...+..+   +. +  .+++...++.
T Consensus       282 l~~ld~~~rViy~gSFSK~l~--PglRlG~vv~p~-~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~  358 (459)
T COG1167         282 LKALDAPGRVIYLGSFSKTLA--PGLRLGYVVAPP-ELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRRE  358 (459)
T ss_pred             hHhhCCCCCEEEEeeehhhcc--cccceeeeeCCH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               223478999999999994  579999999985 4555555555544444444442222   22 1  2345666677


Q ss_pred             HHHHHHHHHHHHHhCC
Q 022194          257 QQDNAQKIAEFLASHP  272 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~  272 (301)
                      +.++...+.+.|+++.
T Consensus       359 y~~rr~~l~~~L~~~~  374 (459)
T COG1167         359 YARRRDALLEALAEYL  374 (459)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            7888888999998864

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.92  E-value=2.2e-23  Score=184.49  Aligned_cols=217  Identities=19%  Similarity=0.187  Sum_probs=158.2

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      +++...++++.+++++|.++++++++|++++. ++..++++||+|+++.+.|.+..    ..++..|++++.++.+    
T Consensus        42 ~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~  117 (361)
T cd06452          42 EKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSY----VAAERAGLNVREVPNTGHPE  117 (361)
T ss_pred             cCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHH----HHHHhcCCEEEEEecCCCCC
Confidence            34678999999999999977777777788885 66678899999999999888775    3456778888888743    


Q ss_pred             ---CHHHHHhhcC-------CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEe
Q 022194          128 ---DLDEVASAIG-------PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMH  196 (301)
Q Consensus       128 ---d~~~l~~~l~-------~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~  196 (301)
                         |+++++++++       +++++|++++|+||+|...++++|+++|+++|+++|+|++|+.+... .....++|++++
T Consensus       118 ~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~  197 (361)
T cd06452         118 YHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVG  197 (361)
T ss_pred             cccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEe
Confidence               6788888875       37899999999999999999999999999999999999999977643 344568999999


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHHhhhh--------cCCCCCHHhHHHHHcccccHH---HHHHHHHHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--------EGSGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIA  265 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~  265 (301)
                      |+||++++|.  ++|++++++ .+.+++......        .+.+......+.+..+++.+.   ++..+..++++++.
T Consensus       198 s~~K~l~~~~--~~G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~  274 (361)
T cd06452         198 SGHKSMAASA--PIGVLATTE-EWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFV  274 (361)
T ss_pred             cCCccccCCC--CeEEEEECH-HHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999996443  689998875 455544332211        111111112222233333222   23344445667899


Q ss_pred             HHHHhCCCcce
Q 022194          266 EFLASHPRVKK  276 (301)
Q Consensus       266 ~~l~~~~~v~~  276 (301)
                      +.|+++++++.
T Consensus       275 ~~L~~l~g~~v  285 (361)
T cd06452         275 AELEKIEGIKQ  285 (361)
T ss_pred             HHHhcCCCeEE
Confidence            99998877643

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=1.1e-23  Score=185.80  Aligned_cols=212  Identities=17%  Similarity=0.253  Sum_probs=158.0

Q ss_pred             chHHHHHHHHHhhcCCC-ceEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           55 PTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      +...++++.++++++.+ +.+++++|+ +++. ++..++++||+|++++|.|..+.    ..++..|.+++.++.+    
T Consensus        59 ~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~  134 (351)
T PRK14807         59 PTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYS----VYSKIAGAVEIPVKLKEDYT  134 (351)
T ss_pred             ccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEeecCCCCC
Confidence            33678899999988875 567777775 7776 55667899999999999998765    4556778888888754    


Q ss_pred             -CHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc----CccCCCCcEEEeccccc
Q 022194          128 -DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----RPLELGADIVMHSATKF  201 (301)
Q Consensus       128 -d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~di~~~S~sK~  201 (301)
                       |+++++++++. ++++|++++|+||||.+.+.+++.+++++++.++|+||+|....-.    ........++++||||.
T Consensus       135 ~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~  214 (351)
T PRK14807        135 YDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKA  214 (351)
T ss_pred             CCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHh
Confidence             67899998874 8999999999999999999999999999989999999999642111    01123568999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc--cHHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      + |.+|+|.||++++ +.+.+.+.....  ....+...+.++...++  .+.+..+.+.++++.+.+.|++.+++
T Consensus       215 ~-~~~GlRiG~~v~~-~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~  285 (351)
T PRK14807        215 F-GLAGLRVGYAVAN-ENILKYLNLVKS--PYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGI  285 (351)
T ss_pred             c-ccchhceeeeecC-HHHHHHHHHccC--CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            9 6788999999986 456565544332  23345555555544443  34555566777777888888776665

>PLN02822 serine palmitoyltransferase

Probab=99.92  E-value=1.1e-23  Score=191.82  Aligned_cols=250  Identities=14%  Similarity=0.181  Sum_probs=178.9

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCcccc--C--CCC-chHHHHHHHHHhhcCCCceEEecchHHHH-H
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYT--R--SGN-PTRDALESLLAKLDKADRALCFTSGMAAL-A   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~--~--~g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai-~   84 (301)
                      ..++||+ +++|+|...+|.+.......-.   ..+.+++  +  +|. +...++++.|+++++.++.+++++|..++ .
T Consensus       109 ~~~id~~-s~~~lgl~~~~~i~ea~~~al~---~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~s  184 (481)
T PLN02822        109 KDVVNFA-SANYLGLIGNEKIKESCTSALE---KYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLSTIFS  184 (481)
T ss_pred             ceEEEeE-CCCcCCCCCCHHHHHHHHHHHH---HhCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHHHHHH
Confidence            4789999 8999999999988766433211   1122222  1  233 34899999999999998889988887555 5


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC---------CCc-eEEEEeCCCCCccc
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG---------PWT-KLVWVESPTNPRQQ  154 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~---------~~~-~~v~i~~~~np~G~  154 (301)
                      ++.+++++||.|++....|..+.    ..+...+.++++++.+|.++++..+.         +++ ++|+++++++++|.
T Consensus       185 ai~a~~~~gd~Ii~d~~~H~s~~----~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~  260 (481)
T PLN02822        185 VIPAFCKKGDIIVADEGVHWGIQ----NGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQ  260 (481)
T ss_pred             HHHHhCCCCCEEEEeCCccHHHH----HHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCC
Confidence            77788999999998766554443    33444567888898887777665553         234 79999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCcCCccccCc----------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       155 ~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~----------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                      +.|+++|+++|++||+++|+||+|+.+.++..          .....|++++||+|+++ ..   +|++++++ .+.+.+
T Consensus       261 i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg-~~---GG~i~g~~-~ii~~~  335 (481)
T PLN02822        261 IAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALA-TE---GGFCTGSA-RVVDHQ  335 (481)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhh-hC---CeEEEcCH-HHHHHH
Confidence            99999999999999999999999987665421          11256899999999995 33   48888765 455544


Q ss_pred             HHhhhh--cCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhCCC
Q 022194          225 YFLQNA--EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       225 ~~~~~~--~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                      ......  ++..+++..+.+++.+++.+   .+.++++.++.+++++.|++.++
T Consensus       336 ~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g  389 (481)
T PLN02822        336 RLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPG  389 (481)
T ss_pred             HhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            433322  22334465556655555443   45778899999999999987644

>PRK05839 hypothetical protein; Provisional

Probab=99.92  E-value=2.6e-23  Score=184.76  Aligned_cols=245  Identities=15%  Similarity=0.112  Sum_probs=159.8

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC---CceEEecchH-HHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA---DRALCFTSGM-AALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~---~~~i~~~sG~-~ai~   84 (301)
                      ..+++|+.+.+.++.  ++.+.... .. . . .....|.+. |.+. ++++.+++++.+|.   ++.+++++|+ +++.
T Consensus        24 ~~~i~l~~~~p~~~~--~~~~~~a~-~~-~-~-~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~   97 (374)
T PRK05839         24 YKGLDLTIGEPQFET--PKFIQDAL-KN-N-A-HLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLF   97 (374)
T ss_pred             CCeEEcCCCCCCCCC--CHHHHHHH-HH-H-h-hccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence            378888854444553  23222221 11 1 0 123456655 6655 88888888888763   2567777775 7886


Q ss_pred             HH-Hhcc--CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           85 AV-THLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        85 ~~-~~~~--~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                      .+ ..++  ++||.|+++.|.|..+.    ..+...|++++.++.+     +++..+..+ +++++|++++||||||.+.
T Consensus        98 ~~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~-~~~k~v~i~nP~NPTG~~~  172 (374)
T PRK05839         98 NFPQFVLFDKQNPTIAYPNPFYQIYE----GAAIASRAKVLLMPLTKENDFTPSLNEKEL-QEVDLVILNSPNNPTGRTL  172 (374)
T ss_pred             HHHHHHhcCCCCCEEEECCCCchhhH----HHHHhcCCEEEEeecccccCCcCCcchhhh-ccccEEEEeCCCCCcCccc
Confidence            44 4443  57899999999999986    5556788999998864     122222222 4689999999999999997


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCcccc----Cc---------cCCCCcEEEecccccccCCCCceeeEEEEcchhH
Q 022194          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS----RP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (301)
Q Consensus       157 ~---l~~l~~l~~~~~~~li~D~~~~~~~~~----~~---------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~  220 (301)
                      +   +++|+++|+++|++||+||+|......    ..         ...+..+++.||||.| +.+|+|.||++++ +.+
T Consensus       173 s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~ii~~-~~~  250 (374)
T PRK05839        173 SLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRS-SAPGLRSGFIAGD-ASI  250 (374)
T ss_pred             CHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEecccccc-CCccceeEEEecC-HHH
Confidence            5   777888999999999999998743211    10         1224679999999999 5678999999986 456


Q ss_pred             HHHHHHhhhhcCCCCCHHhHHHHHcc---cccHHHHHHHHHHHHHHHHHHH
Q 022194          221 AKELYFLQNAEGSGLAPFDCWICLRG---VKTMALRVEKQQDNAQKIAEFL  268 (301)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~l~~~l  268 (301)
                      .+.+.......+...+...+.++...   .+.+++.++.+.++.+.+.+.|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  301 (374)
T PRK05839        251 LKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREIL  301 (374)
T ss_pred             HHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc
Confidence            56555544433333343333333322   2334555666666666666655

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.92  E-value=5.7e-23  Score=184.38  Aligned_cols=221  Identities=19%  Similarity=0.164  Sum_probs=151.7

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcC----CCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDK----ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~----~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      .|.+. |.+. ++++.+.+....+    .++.++++++++++. ++..++.+||+|++++|.|..+.    ..++..|.+
T Consensus        68 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~  143 (403)
T TIGR01265        68 GYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYD----TRAAFSGLE  143 (403)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHcCCE
Confidence            45443 4433 5555555544322    234555555579986 55667799999999999998775    455677888


Q ss_pred             EEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-----
Q 022194          121 VKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----  185 (301)
Q Consensus       121 ~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----  185 (301)
                      ++.++.+       |++.+++.+.++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|....+..     
T Consensus       144 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~  223 (403)
T TIGR01265       144 VRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIP  223 (403)
T ss_pred             EEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccc
Confidence            8877642       688999988888999999999999999975   8889999999999999999997544321     


Q ss_pred             c---cCCCCcEEEecccccccCCCCceeeEEEEcc--hh----HHHHHHHhhhhcCCCCCHHhHHHHHccc-----ccHH
Q 022194          186 P---LELGADIVMHSATKFIAGHSDVMAGVLAVKG--ER----LAKELYFLQNAEGSGLAPFDCWICLRGV-----KTMA  251 (301)
Q Consensus       186 ~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~  251 (301)
                      .   ......+++.||||.| +.+|+|.||+++.+  +.    +.+.+..... .....+...+.++...+     ..+.
T Consensus       224 ~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~  301 (403)
T TIGR01265       224 MASFASIVPVLSLGGISKRW-VVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILENTPQEFFD  301 (403)
T ss_pred             hhhhccCCcEEEEeeccccc-CCCcceEEEEEEeCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHhChHHHHH
Confidence            1   1112469999999998 45689999999853  22    2222222221 12233444444443333     2345


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCc
Q 022194          252 LRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       252 ~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      +.++++.+++..+.+.|+.++++
T Consensus       302 ~~~~~~~~~~~~l~~~L~~~~~~  324 (403)
T TIGR01265       302 GKISVLKSNAELCYEELKDIPGL  324 (403)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCc
Confidence            66777888888899999877554

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PLN02231 alanine transaminase

Probab=99.92  E-value=4.6e-23  Score=189.33  Aligned_cols=226  Identities=17%  Similarity=0.192  Sum_probs=156.8

Q ss_pred             CccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHHHH-Hhcc-CCCCeEEEcCCCCccHHHHHhhhcccC
Q 022194           46 PYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALAAV-THLL-GTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (301)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~~~-~~~~-~~g~~Vlv~~~~y~~~~~~~~~~~~~~  117 (301)
                      ...|++. |.+. |+.+.+++.+..|.+   +.|++++| ++++..+ ..++ .+||.|+++.|.|+.+.    ..+...
T Consensus       161 ~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~----~~~~~~  236 (534)
T PLN02231        161 TGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYS----ASIALH  236 (534)
T ss_pred             ccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHH----HHHHHc
Confidence            3457776 7766 888888888776532   45555555 5888754 4555 47999999999999997    555677


Q ss_pred             CcEEEEecCC-------CHHHHHhhcCC------CceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCc
Q 022194          118 GVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (301)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~  181 (301)
                      |.+++.++++       |++++++.++.      +++++++++|+||||.+.+   +++|+++|+++|++||+||+|...
T Consensus       237 g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l  316 (534)
T PLN02231        237 GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQEN  316 (534)
T ss_pred             CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhc
Confidence            7788887653       68889888753      6899999999999999975   788999999999999999999765


Q ss_pred             cccC-----cc----------CC-CCcEEEecccccccCCCCceeeEEEEc--chhHHHHHHHhhhhcCCC--CCHHhHH
Q 022194          182 VLSR-----PL----------EL-GADIVMHSATKFIAGHSDVMAGVLAVK--GERLAKELYFLQNAEGSG--LAPFDCW  241 (301)
Q Consensus       182 ~~~~-----~~----------~~-~~di~~~S~sK~~~g~~g~~~g~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~  241 (301)
                      .+..     ..          .. ...+++.|+||.+.|.+|+|+||+++.  ++.+.+.+........+.  .+...+.
T Consensus       317 ~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~  396 (534)
T PLN02231        317 VYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILAS  396 (534)
T ss_pred             ccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHH
Confidence            4421     00          01 135889999998767789999999863  455666554443322211  1222222


Q ss_pred             HHHccc----ccH-------HHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          242 ICLRGV----KTM-------ALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       242 ~~~~~l----~~~-------~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      .++..-    ..+       ...++.+.++++.+.+.|++++++.
T Consensus       397 ~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~  441 (534)
T PLN02231        397 LVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVT  441 (534)
T ss_pred             HHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence            233211    122       2235678888888999998876543

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.92  E-value=1.8e-23  Score=182.89  Aligned_cols=209  Identities=14%  Similarity=0.164  Sum_probs=149.7

Q ss_pred             CCCCchHHHHHHHHHhhcCCC-ceEEecchH-HHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           51 RSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        51 ~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      +|..+...+|++.+++.++.+ +.+++++|+ +++..+..++++| .|++.+|.|..+.    ..++..|++++.++.+ 
T Consensus        36 ~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~~~~~-~vv~~~P~y~~y~----~~~~~~G~~v~~vp~~~  110 (332)
T PRK06425         36 IYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSYINVG-NIIIVEPNFNEYK----GYAFTHGIRISALPFNL  110 (332)
T ss_pred             cCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhCCC-cEEEeCCChHHHH----HHHHHcCCeEEEEeCCc
Confidence            444566899999999999876 567777775 8887665677776 4666799999886    6677889999999875 


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-------ccCCCCcEE
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-------PLELGADIV  194 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-------~~~~~~di~  194 (301)
                         |.+.++   ..++++|++++|+||||.+.+   +++|+++|+++++++|+||+|.......       ....+..++
T Consensus       111 ~~~~~~~l~---~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~  187 (332)
T PRK06425        111 INNNPEILN---NYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVII  187 (332)
T ss_pred             ccCcHHHHh---hcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEE
Confidence               233332   247899999999999999976   6778888999999999999987543321       112356899


Q ss_pred             EecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcc-cc-cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG-VK-TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       195 ~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++||||.+ |.+|+|.||+++++ .+.+.+.....  .+..+.....++... .+ .+++.++.+.++++.+.+.|+++
T Consensus       188 ~~SfSK~~-~l~GlRiGy~v~~~-~li~~l~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  262 (332)
T PRK06425        188 GRSLTKIL-GIPSLRIGYIATDD-YNMKISRKITE--PWSVCDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAM  262 (332)
T ss_pred             EeecHHhc-CCchhhheeeecCH-HHHHHHHHcCC--CCccCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999 66789999999875 45565544322  233344333332221 11 23455677778888899998875

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.92  E-value=1.4e-23  Score=185.46  Aligned_cols=247  Identities=16%  Similarity=0.188  Sum_probs=166.6

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecchH-HHHHHHHh
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~~~~~   88 (301)
                      ...++|+...+++|+.  |........  ...  ....|..   +...++++.++++++.+ +.+++++|+ +++..+..
T Consensus        20 ~~~i~l~~~~~~~~~p--~~~~~a~~~--~~~--~~~~y~~---~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~   90 (356)
T PRK08056         20 DQLLDFSANINPLGMP--VSLKRAIID--NLD--CAERYPD---VEYRHLHQALARHHQVPASWILAGNGETESIFAVVS   90 (356)
T ss_pred             hhEEEeccccCCCCCC--HHHHHHHHH--HHH--hcccCcC---ccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHH
Confidence            4678888555666633  333332111  111  1112332   23688888888888765 556666664 88875555


Q ss_pred             ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CH-HHHHhhcCCCceEEEEeCCCCCcccccc---HH
Q 022194           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DL-DEVASAIGPWTKLVWVESPTNPRQQICD---IR  159 (301)
Q Consensus        89 ~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~-~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~  159 (301)
                      .+.+|+ +++..|.|..+.    ..++..|.+++.++.+     ++ +++++.+.+++++|++++|+||||...+   ++
T Consensus        91 ~l~~g~-viv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~  165 (356)
T PRK08056         91 GLKPRR-AMIVTPGFAEYR----RALQQVGCEIRRYSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERQLLQ  165 (356)
T ss_pred             HhCCCC-EEEeCCCcHHHH----HHHHHcCCeEEEEecccccCCCccHHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHH
Confidence            567776 677789998775    5567788898888753     22 3555666788999999999999999987   78


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCccccC------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCC
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  233 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~~~------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~  233 (301)
                      +|+++|+++++++|+||+|.......      ......++++.|+||++ |.+|+|.||++++++.+.+.+....  ..+
T Consensus       166 ~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~v~~~~~~~~~l~~~~--~~~  242 (356)
T PRK08056        166 AIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFY-AIPGLRLGYLVNSDDAAVARMRRQQ--MPW  242 (356)
T ss_pred             HHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhc-cCcchhheeeecCCHHHHHHHHHhC--CCC
Confidence            89999999999999999986433221      11235789999999999 6678999999986555655554322  223


Q ss_pred             CCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          234 GLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       234 ~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      ..+...+.++...++   ...+.++.+.++++++.+.|++++++
T Consensus       243 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  286 (356)
T PRK08056        243 SINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLL  286 (356)
T ss_pred             chhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            444444444444443   23445567778888888999877654

>PRK07683 aminotransferase A; Validated

Probab=99.92  E-value=6e-23  Score=183.30  Aligned_cols=219  Identities=18%  Similarity=0.219  Sum_probs=155.7

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC----CceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|.+. |.+. ++++.+++.+.+|.    +..+++++| ++|+. ++..++++||+|++++|.|..+.    ..++..|
T Consensus        59 ~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~g  134 (387)
T PRK07683         59 TSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYE----PIIRLCG  134 (387)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchH----HHHHHcC
Confidence            456544 6555 77777777665543    214555555 68886 55567899999999999999886    4445678


Q ss_pred             cEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----
Q 022194          119 VVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----  185 (301)
Q Consensus       119 ~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----  185 (301)
                      .+++.++.+      |.+++++.+.++++++++++|+||||.+.+   +++|+++|+++|+++|+||+|....+..    
T Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~  214 (387)
T PRK07683        135 AKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTS  214 (387)
T ss_pred             CEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCC
Confidence            888888764      567899988888999999999999999975   8889999999999999999998554321    


Q ss_pred             cc----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc----ccHHHHHHHH
Q 022194          186 PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQ  257 (301)
Q Consensus       186 ~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~  257 (301)
                      ..    ..+.++++.|+||.+ |.+|+|.||+++++ .+.+.+...........+...+.++...+    .++.+.++.+
T Consensus       215 ~~~~~~~~~~vi~~~s~SK~~-~~pGlRiG~i~~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  292 (387)
T PRK07683        215 IAHFPEMREKTIVINGLSKSH-SMTGWRIGFLFAPS-YLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQY  292 (387)
T ss_pred             hhhccCCcCCeEEEeeccccc-cCccceeEEEEcCH-HHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHH
Confidence            11    124579999999999 55689999999875 45555444333322233334443333333    2344556677


Q ss_pred             HHHHHHHHHHHHhC
Q 022194          258 QDNAQKIAEFLASH  271 (301)
Q Consensus       258 ~~~~~~l~~~l~~~  271 (301)
                      .++++.+.+.|++.
T Consensus       293 ~~~~~~~~~~l~~~  306 (387)
T PRK07683        293 KKRRDYVYNRLISM  306 (387)
T ss_pred             HHHHHHHHHHHHHc
Confidence            78888888888764

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.92  E-value=1.1e-22  Score=185.87  Aligned_cols=216  Identities=14%  Similarity=0.174  Sum_probs=151.3

Q ss_pred             ccCC-CCch-HHHHHHHHHhhcC----CC-ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcc-cCC
Q 022194           49 YTRS-GNPT-RDALESLLAKLDK----AD-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-KTG  118 (301)
Q Consensus        49 y~~~-g~~~-~~~l~~~l~~~~~----~~-~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~-~~g  118 (301)
                      |..+ |.+. ++++.+++.+.+|    .+ +.|++++| ++++. ++..+++|||.|++++|.|+.+..    .+. ..|
T Consensus        90 y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~----~~~~~~G  165 (496)
T PLN02376         90 FQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDR----DLRWRTG  165 (496)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHH----HHHhhCC
Confidence            4444 6666 8888888887765    22 45666666 58886 667789999999999999999963    333 578


Q ss_pred             cEEEEecCC-------CHHHHHhhc------CCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcc
Q 022194          119 VVVKRVNTC-------DLDEVASAI------GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~l------~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~  182 (301)
                      ++++.++.+       |++.+++++      ..++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....
T Consensus       166 ~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~  245 (496)
T PLN02376        166 VEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATV  245 (496)
T ss_pred             CEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccc
Confidence            888888862       567776543      247899999999999999986   6778999999999999999998654


Q ss_pred             ccC----c---c--C---C----CCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcc
Q 022194          183 LSR----P---L--E---L----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (301)
Q Consensus       183 ~~~----~---~--~---~----~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (301)
                      +..    +   .  +   .    ...+++.||||.| |.+|+|.|++++.++.+.+........  ...+...+.++...
T Consensus       246 f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~-glpGlRvG~li~~~~~l~~~~~~~~~~--~~vs~~~Q~a~~~~  322 (496)
T PLN02376        246 FAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM-GLPGFRVGIVYSFNDSVVSCARKMSSF--GLVSSQTQLMLASM  322 (496)
T ss_pred             cCCCCcccHHHhhccccccccCCCeEEEEEeccccC-CCCcceEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHHHHH
Confidence            321    0   0  0   0    1235689999999 667899999999767666654433322  22444444444333


Q ss_pred             ccc-------HHHHHHHHHHHHHHHHHHHHhC
Q 022194          247 VKT-------MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       247 l~~-------~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +..       +.+.++++.++.+.+.+.|++.
T Consensus       323 L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~  354 (496)
T PLN02376        323 LSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA  354 (496)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            322       2334566677777788888764

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.92  E-value=3.5e-23  Score=185.83  Aligned_cols=216  Identities=21%  Similarity=0.228  Sum_probs=157.5

Q ss_pred             HHHHHHHHHhhcCC-C-ceEEecch-HHHHHHH-Hhc----cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDKA-D-RALCFTSG-MAALAAV-THL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~-~-~~i~~~sG-~~ai~~~-~~~----~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      .+++++.+++++|. + +.+++++| ++++.++ ..+    +++||+|+++++.|++....|...++..|++++.++.+ 
T Consensus        65 ~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~  144 (401)
T PRK10874         65 YEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA  144 (401)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC
Confidence            67888999999998 3 45555555 6888644 443    47899999999999987666667778889999998753 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          |++++++.+++++++|++++++||||.+.|+++|+++|+++|+++++|++|+.+... +....++|+++.|+||++
T Consensus       145 ~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~  224 (401)
T PRK10874        145 DRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLY  224 (401)
T ss_pred             CCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEeccccc
Confidence                789999999999999999999999999999999999999999999999999876554 333457999999999976


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhh---------------------hhcCCCCCHHhHHHHHcccccH-----HHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQ---------------------NAEGSGLAPFDCWICLRGVKTM-----ALRVEK  256 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~  256 (301)
                       ||+|+  |+++.+++ +.+.+....                     .....+.+.....++..+++.+     ....++
T Consensus       225 -gp~G~--G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~  300 (401)
T PRK10874        225 -GPTGI--GVLYGKSE-LLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESW  300 (401)
T ss_pred             -CCCcc--EEEEEchH-HHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence             78874  88888754 333322111                     0000122323333333444332     223455


Q ss_pred             HHHHHHHHHHHHHhCCCcce
Q 022194          257 QQDNAQKIAEFLASHPRVKK  276 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~v~~  276 (301)
                      ..+.++++.+.|++++++..
T Consensus       301 ~~~l~~~l~~~l~~~~g~~~  320 (401)
T PRK10874        301 SRSLATLAEDALAKLPGFRS  320 (401)
T ss_pred             HHHHHHHHHHHHhcCCCEEE
Confidence            56667788888888776643

>PRK08175 aminotransferase; Validated

Probab=99.92  E-value=4.5e-23  Score=184.62  Aligned_cols=220  Identities=17%  Similarity=0.180  Sum_probs=157.0

Q ss_pred             CccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccC
Q 022194           46 PYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (301)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~  117 (301)
                      ...|++. |.+. ++++.+++.+.+|.    ++.+++++|+ +++. ++..+++|||+|++++|.|..+.    ..++..
T Consensus        60 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~  135 (395)
T PRK08175         60 THGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHI----YGAVIA  135 (395)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHHc
Confidence            3557665 7766 88888888776553    2357677775 8885 55678899999999999999886    334567


Q ss_pred             CcEEEEecCC----CHHHHHhhcC---CCceEEEEeCCCCCccccccH---HHHHHHHHHcCCEEEEeCCcCCccccC--
Q 022194          118 GVVVKRVNTC----DLDEVASAIG---PWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMSPVLSR--  185 (301)
Q Consensus       118 g~~~~~~~~~----d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~l---~~l~~l~~~~~~~li~D~~~~~~~~~~--  185 (301)
                      |.+++.++.+    ..++++++++   +++++|++++|+||||.+.+.   ++|+++|+++|+++|+||+|....+..  
T Consensus       136 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~  215 (395)
T PRK08175        136 GAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWK  215 (395)
T ss_pred             CCeEEEEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCC
Confidence            8888888764    3677887775   478999999999999999875   789999999999999999986433211  


Q ss_pred             --c----c-CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc----ccHHHHH
Q 022194          186 --P----L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRV  254 (301)
Q Consensus       186 --~----~-~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~  254 (301)
                        .    . ..+..+++.||||.| |.+|+|.||++.++ .+.+.+.........+.+...+.++...+    +++.+.+
T Consensus       216 ~~~~~~~~~~~~~~i~~~S~SK~~-g~pGlRiG~~~~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  293 (395)
T PRK08175        216 APSIMQVPGAKDVAVEFFTLSKSY-NMAGWRIGFMVGNP-ELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIA  293 (395)
T ss_pred             CcchhcCCCcccCEEEEeeccccc-cCcchhheeeeCCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHH
Confidence              1    1 123568899999999 56789999999764 56666655554333333333333222222    2345566


Q ss_pred             HHHHHHHHHHHHHHHhC
Q 022194          255 EKQQDNAQKIAEFLASH  271 (301)
Q Consensus       255 ~~~~~~~~~l~~~l~~~  271 (301)
                      +.+.++.+.+.+.|+++
T Consensus       294 ~~~~~~~~~~~~~L~~~  310 (395)
T PRK08175        294 EQYKRRRDVLVKGLHEA  310 (395)
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            77778888888888875

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.92  E-value=1.2e-23  Score=186.72  Aligned_cols=244  Identities=16%  Similarity=0.234  Sum_probs=170.0

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecchH-HHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~-~~~   87 (301)
                      ..+++|++..+++|.  +|.+.........    ....|.   .+...++++.++++++.+ +.+++++|+ +++. ++.
T Consensus        32 ~~~i~l~~~~~~~~~--~~~~~~a~~~~~~----~~~~y~---~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~  102 (367)
T PRK02731         32 ADIIKLASNENPLGP--SPKAIEAIRAAAD----ELHRYP---DGSGFELKAALAEKFGVDPERIILGNGSDEILELLAR  102 (367)
T ss_pred             CceEEecCCCCCCCC--CHHHHHHHHHHHH----hhcCCC---CCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence            468999955467874  3433322111111    112233   223468889999998875 567777775 7776 456


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE  163 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~  163 (301)
                      .++++||+|++++|.|..+.    ..+...|.+++.++.+    |++++++.+++++++|++++|+||||.+.+.++|.+
T Consensus       103 ~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~  178 (367)
T PRK02731        103 AYLGPGDEVIYSEHGFAVYP----IAAQAVGAKPVEVPAKDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVER  178 (367)
T ss_pred             HhcCCCCEEEEecCCHHHHH----HHHHHcCCeEEEecccCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHH
Confidence            67889999999999997765    3445688899888764    789999999888999999999999999999999999


Q ss_pred             HHHHc--CCEEEEeCCcCCccccC--------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCC
Q 022194          164 MAHAH--GALLLVDNSIMSPVLSR--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  233 (301)
Q Consensus       164 l~~~~--~~~li~D~~~~~~~~~~--------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~  233 (301)
                      +++..  |+++|+||+|.......        .......++++|+||.+ |.+|+|.||+++++ .+.+.+.....  ..
T Consensus       179 l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~-~~~~~l~~~~~--~~  254 (367)
T PRK02731        179 FLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAY-GLAGLRVGYGIAPP-EIIDALNRVRQ--PF  254 (367)
T ss_pred             HHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhh-cCcccceeeeeCCH-HHHHHHHHccC--CC
Confidence            88875  89999999986543311        01224578999999999 66788999999875 45555544332  23


Q ss_pred             CCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          234 GLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       234 ~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..+...+.++...++.   +.+.++.+.++.+.+.+.|++.
T Consensus       255 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  295 (367)
T PRK02731        255 NVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL  295 (367)
T ss_pred             CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            3455555555554443   3455566667777788888775

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=9.1e-24  Score=187.46  Aligned_cols=216  Identities=16%  Similarity=0.185  Sum_probs=155.1

Q ss_pred             cccCCCCch-HHHHHHHHHhhcCCC---ceEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEE
Q 022194           48 DYTRSGNPT-RDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (301)
Q Consensus        48 ~y~~~g~~~-~~~l~~~l~~~~~~~---~~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~  121 (301)
                      .|...|.+. ++++.+++.+.+|.+   +.+++++|+ +++. ++..++++||.|+++.|.|+.+.    ..++..|.++
T Consensus        61 ~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~----~~~~~~g~~~  136 (368)
T PRK03317         61 RYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHP----IIARGTHTEW  136 (368)
T ss_pred             cCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHhcCCee
Confidence            454335443 666666666655532   567777775 8886 55667899999999999999886    4555777888


Q ss_pred             EEecCC-----CHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-c------cC
Q 022194          122 KRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-P------LE  188 (301)
Q Consensus       122 ~~~~~~-----d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~------~~  188 (301)
                      ..++.+     |++++++++. .++++|++++|+||||.+.+.+++.++++..++++|+||+|+...... +      ..
T Consensus       137 ~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~  216 (368)
T PRK03317        137 VEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPE  216 (368)
T ss_pred             EEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHh
Confidence            777643     7889998886 478899999999999999999999999999999999999997543211 1      11


Q ss_pred             CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHH
Q 022194          189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIA  265 (301)
Q Consensus       189 ~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~  265 (301)
                      ....+++.||||.+ |.+|+|.|++++++ .+.+.+....  ..+..++..+.++...++.   +.+.++++.++.+.+.
T Consensus       217 ~~~~i~~~SfSK~~-g~~GlRiG~~~~~~-~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~  292 (368)
T PRK03317        217 YPRLVVSRTMSKAF-AFAGGRLGYLAAAP-AVVDALRLVR--LPYHLSAVTQAAARAALRHADELLASVAALRAERDRVV  292 (368)
T ss_pred             CCCEEEEEechhhh-ccchhhhhhhhCCH-HHHHHHHhcC--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence            23468999999999 45679999999864 4555554433  2345566666665555543   3344556677777788


Q ss_pred             HHHHhC
Q 022194          266 EFLASH  271 (301)
Q Consensus       266 ~~l~~~  271 (301)
                      +.|+++
T Consensus       293 ~~L~~~  298 (368)
T PRK03317        293 AWLREL  298 (368)
T ss_pred             HHHHHC
Confidence            888765

>PRK09265 aminotransferase AlaT; Validated

Probab=99.91  E-value=1.1e-22  Score=182.65  Aligned_cols=222  Identities=17%  Similarity=0.204  Sum_probs=146.9

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhc--CCC-ceEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLD--KAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~--~~~-~~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..|+.. |.+. ++++.+++....  +.+ +.+++++|+ +++. ++..++++||+|++++|.|..+.    ..++..|.
T Consensus        66 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~  141 (404)
T PRK09265         66 QGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWT----AAVSLSGG  141 (404)
T ss_pred             CCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChH----HHHHHcCC
Confidence            446554 5444 566666654332  232 456666664 7775 66677899999999999999886    44445666


Q ss_pred             EEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----
Q 022194          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----  185 (301)
Q Consensus       120 ~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----  185 (301)
                      .++.++.+       |++++++.+++++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....+..    
T Consensus       142 ~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~  221 (404)
T PRK09265        142 KPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHI  221 (404)
T ss_pred             EEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcC
Confidence            66665432       678899998888999999999999999987   8889999999999999999987433221    


Q ss_pred             ----ccCCCCcEEEecccccccCCCCceeeEEEEc-chh----HHHHHHHhhhhcCCCCCHHhHHHHHcccc---cHHH-
Q 022194          186 ----PLELGADIVMHSATKFIAGHSDVMAGVLAVK-GER----LAKELYFLQNAEGSGLAPFDCWICLRGVK---TMAL-  252 (301)
Q Consensus       186 ----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~-  252 (301)
                          .......+++.||||.+ |.+|+|.||++.+ ++.    +.+.+.... ......+...+.++...+.   .+.+ 
T Consensus       222 ~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~  299 (404)
T PRK09265        222 SIASLAPDLLCVTFNGLSKAY-RVAGFRVGWMVLSGPKKHAKGYIEGLDMLA-SMRLCANVPAQHAIQTALGGYQSINEL  299 (404)
T ss_pred             CHHHcCCCceEEEEecchhhc-cCcccceEEEEEeCchHHHHHHHHHHHHHh-ccccCCCcHHHHHHHHHhcCchhHHHH
Confidence                11112468899999999 5678999999974 332    223222221 1222334444444433332   2222 


Q ss_pred             --HHHHHHHHHHHHHHHHHhCCCc
Q 022194          253 --RVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       253 --~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                        ..+++.++++.+.+.|++++++
T Consensus       300 ~~~~~~~~~~r~~~~~~L~~~~~~  323 (404)
T PRK09265        300 ILPGGRLYEQRDRAWELLNAIPGV  323 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCC
Confidence              2235666677788888776554

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.91  E-value=1.4e-23  Score=184.94  Aligned_cols=248  Identities=18%  Similarity=0.268  Sum_probs=171.8

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecch-HHHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~-~~~   87 (301)
                      +..++|+.+++.++  .+|.+......  . .. ....|.   .+...++++.++++++.+ +.+++++| ++++. ++.
T Consensus        19 ~~~i~l~~~~~~~~--~~~~~~~a~~~--~-~~-~~~~y~---~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~   89 (346)
T TIGR01141        19 KEVIKLNSNENPFG--PPPKAKEALRA--E-AD-KLHRYP---DPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIR   89 (346)
T ss_pred             CceEEccCCCCCCC--CCHHHHHHHHH--h-HH-HhhcCC---CCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHH
Confidence            57899984333344  45544443211  1 10 112233   333578889999998864 44555555 58875 556


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~  162 (301)
                      .++++||+|++++|.|..+.    ..++..|.+++.++.+     |++++++.+.+++++|++++|+||||.+.+++++.
T Consensus        90 ~l~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~  165 (346)
T TIGR01141        90 AFLEPGDAVLVPPPTYSMYE----ISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIE  165 (346)
T ss_pred             HhcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHH
Confidence            67899999999999987664    4456678888888763     78999988888899999999999999999999999


Q ss_pred             HHHHHc--CCEEEEeCCcCCcccc-Cc----cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCC
Q 022194          163 EMAHAH--GALLLVDNSIMSPVLS-RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  235 (301)
Q Consensus       163 ~l~~~~--~~~li~D~~~~~~~~~-~~----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
                      ++++.+  ++++|+|++|+..... ..    .....++++.|+||++ |.+|+|.|+++.++ .+.+.+.....  ....
T Consensus       166 ~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~~-~~~~~~~~~~~--~~~~  241 (346)
T TIGR01141       166 AVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAF-GLAGLRIGYAIANA-EIIDALNKVRA--PFNL  241 (346)
T ss_pred             HHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhh-hchhhhceeeecCH-HHHHHHHhccC--CCCC
Confidence            988877  9999999998732221 11    1123568899999999 55688999999864 45555544332  2344


Q ss_pred             CHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          236 APFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       236 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      ++..+.++...++.   +.+.++++.++++.+.+.|++++++.
T Consensus       242 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  284 (346)
T TIGR01141       242 SRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLE  284 (346)
T ss_pred             CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            55555554444433   45566778888888999998876553

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.91  E-value=3.9e-24  Score=189.61  Aligned_cols=249  Identities=21%  Similarity=0.238  Sum_probs=170.4

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCC--CCCCCCccccCCCCchHHHHHHHHHhhcC--------CCceEEecchH-
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPS--ATENGPYDYTRSGNPTRDALESLLAKLDK--------ADRALCFTSGM-   80 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~--~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--------~~~~i~~~sG~-   80 (301)
                      .+|+|+ +|++.+...+|...+.......  ........|.+..  ...++++.++++++        .+..+++++|+ 
T Consensus         2 ~~I~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~--g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~   78 (363)
T PF00155_consen    2 DVINLG-SNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQ--GYPELREAIADFLGRRYGVPVDPEANILVTSGAQ   78 (363)
T ss_dssp             TEEESS-SSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTT--HHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHH
T ss_pred             CEEEEE-CCCCCCcccccchHHHHHHHHHHhhcccccccCCCch--hhHHHHHHHHHHhhhccCcccccceEEEEecccc
Confidence            478999 7888666444444432211111  1112333454431  15566666666655        23378888887 


Q ss_pred             HHHHHHHh-c-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-------CCHHHHHhhcCC------CceEEEE
Q 022194           81 AALAAVTH-L-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGP------WTKLVWV  145 (301)
Q Consensus        81 ~ai~~~~~-~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~------~~~~v~i  145 (301)
                      +++..+.. + .++||+|++++|.|+.+.    ..++..|.+++.++.       .|++++++.+++      ++++|++
T Consensus        79 ~~~~~~~~~~~~~~~~~vlv~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~  154 (363)
T PF00155_consen   79 AALFLLLRLLKINPGDTVLVPDPCYPSYI----EAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLI  154 (363)
T ss_dssp             HHHHHHHHHHHSSTTSEEEEEESSSTHHH----HHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEE
T ss_pred             cchhhhhhcccccccccceecCCcccccc----ccccccCceeeeccccccccccccccccccccccccccccccceeee
Confidence            55665544 4 569999999999999997    556677888888883       289999998876      5789999


Q ss_pred             eCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccCc--------cCCC-CcEEEecccccccCCCCceeeEE
Q 022194          146 ESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP--------LELG-ADIVMHSATKFIAGHSDVMAGVL  213 (301)
Q Consensus       146 ~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~~--------~~~~-~di~~~S~sK~~~g~~g~~~g~~  213 (301)
                      ++|+||||...+   +++|+++|+++|+++|+||+|........        ...+ ..+++.|+||.+ |.+|+|.|++
T Consensus       155 ~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRvG~i  233 (363)
T PF00155_consen  155 CNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSF-GLPGLRVGYI  233 (363)
T ss_dssp             ESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTT-TSGGGTEEEE
T ss_pred             cccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccc-cccccccccc
Confidence            999999999976   55566669999999999999987665532        1112 369999999999 6678999999


Q ss_pred             EEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc-------ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          214 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-------KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +++ +.+.+.+.........  +...+.++...+       +.+.+.++++.++++.+.+.|++.
T Consensus       234 ~~~-~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~  295 (363)
T PF00155_consen  234 VAP-PELIERLRRFQRSGLS--SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI  295 (363)
T ss_dssp             EEE-HHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cch-hhhhhhhhhccccccc--cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh
Confidence            995 5666766655554433  333333332222       145667788889999999999876

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=9.7e-24  Score=185.93  Aligned_cols=215  Identities=17%  Similarity=0.200  Sum_probs=155.6

Q ss_pred             CCCchHHHHHHHHHhhcCCC-ceEEecchH-HHHH-HHHhccCCC-CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC
Q 022194           52 SGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (301)
Q Consensus        52 ~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~-~~~~~~~~g-~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~  127 (301)
                      |..+...++++++++.+|.+ +.+++++|+ +++. ++..++++| |+|+++.|.|..+.    ..++..|.+++.++.+
T Consensus        54 Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~----~~~~~~G~~~~~v~~~  129 (351)
T PRK01688         54 YPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVEIRTVPTL  129 (351)
T ss_pred             CCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHH----HHHHHcCCEEEEeecC
Confidence            33445689999999999876 567777775 8886 555677887 89999999998875    5567788898888763


Q ss_pred             -----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCccccC-----ccCCCCcEEE
Q 022194          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSR-----PLELGADIVM  195 (301)
Q Consensus       128 -----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~--~~~~li~D~~~~~~~~~~-----~~~~~~di~~  195 (301)
                           |++++++++ +++++|++++|+||||.+.+.++|.++++.  .++++|+||+|.......     .......+++
T Consensus       130 ~~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~  208 (351)
T PRK01688        130 DNWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVIL  208 (351)
T ss_pred             CCCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEE
Confidence                 678898887 588999999999999999987776666543  268999999987543211     1233568999


Q ss_pred             ecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc-----cHHHHHHHHHHHHHHHHHHHHh
Q 022194          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       196 ~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~  270 (301)
                      .||||+| |.+|+|.|++++++ .+.+.+.....  .+..+...+.++...++     .+.+.++.+.++++++.+.|++
T Consensus       209 rSfSK~~-glaGlRiGy~i~~~-~~i~~l~~~~~--~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~  284 (351)
T PRK01688        209 RTLSKAF-ALAGLRCGFTLANE-EVINLLLKVIA--PYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKE  284 (351)
T ss_pred             ecchHhh-cCHHHHHhHHhCCH-HHHHHHHhccC--CCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999 77899999999865 45555544332  23344433333333332     3455667777788889999988


Q ss_pred             CCCcc
Q 022194          271 HPRVK  275 (301)
Q Consensus       271 ~~~v~  275 (301)
                      ++++.
T Consensus       285 ~~~~~  289 (351)
T PRK01688        285 IPCVE  289 (351)
T ss_pred             CCCCC
Confidence            76553

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.91  E-value=7.2e-23  Score=184.93  Aligned_cols=217  Identities=17%  Similarity=0.206  Sum_probs=154.6

Q ss_pred             ccCC-CCch-HHHHHHHHHhhcCC----C-ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           49 YTRS-GNPT-RDALESLLAKLDKA----D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        49 y~~~-g~~~-~~~l~~~l~~~~~~----~-~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      |+.. |.+. ++++.+.+.+.++.    + +.+++++| ++++. ++..+++|||.|+++.|.|+.+...+   ....|+
T Consensus        91 y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~---~~~~g~  167 (447)
T PLN02607         91 FQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL---RWRTGV  167 (447)
T ss_pred             cCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH---HhcCCc
Confidence            4444 6665 88888888877652    2 45666666 58885 55667899999999999999986322   224677


Q ss_pred             EEEEecCC-------CHHHHHhhcC------CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccc
Q 022194          120 VVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (301)
Q Consensus       120 ~~~~~~~~-------d~~~l~~~l~------~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~  183 (301)
                      +++.++.+       |++.+++++.      .+++++++++|+||||.+.+   +++|+++|+++++++|+||+|....+
T Consensus       168 ~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f  247 (447)
T PLN02607        168 KIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVF  247 (447)
T ss_pred             EEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEecccccccc
Confidence            88877653       6788888775      37899999999999999986   78899999999999999999986544


Q ss_pred             cCc-----c---------C-CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc
Q 022194          184 SRP-----L---------E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (301)
Q Consensus       184 ~~~-----~---------~-~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (301)
                      ...     .         . ....+++.|+||.| |.+|+|.|++++.++.+...+.......  ..+...+.++...+.
T Consensus       248 ~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~f-g~~GlRvG~ivs~n~~l~~~~~~~~~~~--~~s~~~q~~~~~~L~  324 (447)
T PLN02607        248 SASEFVSVAEIVEARGYKGVAERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTARRMSSFT--LVSSQTQHLLASMLS  324 (447)
T ss_pred             CCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcC-CCCcceEEEEEEcCHHHHHHHHHHhhcC--CCCHHHHHHHHHHhC
Confidence            210     0         1 23568999999999 5678999999986666656554443221  223333333322222


Q ss_pred             -------cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          249 -------TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       249 -------~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                             .+.+.++++.++.+.+.+.|+++
T Consensus       325 d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~  354 (447)
T PLN02607        325 DEEFTENYIRTNRERLRKRYEMIVQGLRRA  354 (447)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                   23455667777888888888875

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.91  E-value=5.9e-23  Score=184.28  Aligned_cols=220  Identities=15%  Similarity=0.118  Sum_probs=150.3

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC---CceEE---ecchHHHHHHH----HhccCCCCeEEEcCCCCccHHHHHhhhc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA---DRALC---FTSGMAALAAV----THLLGTGEEIVAGDDLYGGTDRLLSRVT  114 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~---~~~i~---~~sG~~ai~~~----~~~~~~g~~Vlv~~~~y~~~~~~~~~~~  114 (301)
                      ..|++. |.+. |+++.+++.+..+.   ++.++   +.+|++++.++    ..+++|||+|++++|+|+.+.    ..+
T Consensus        66 ~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~----~~~  141 (404)
T PTZ00376         66 KEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHV----NIF  141 (404)
T ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHH----HHH
Confidence            567766 7776 88888877655421   23344   44445776433    357899999999999999997    667


Q ss_pred             ccCCcEEEEecC---C----CHHHHHhhcC---CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCc
Q 022194          115 PKTGVVVKRVNT---C----DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (301)
Q Consensus       115 ~~~g~~~~~~~~---~----d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~  181 (301)
                      +..|.+++.++.   +    |++.+++.++   ++++++++++||||||.+.+   +++|+++|++|++++|+||+|...
T Consensus       142 ~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~  221 (404)
T PTZ00376        142 KSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGF  221 (404)
T ss_pred             HHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCc
Confidence            788899988886   2    6888888884   34577788999999999975   777899999999999999999754


Q ss_pred             cccC-----------ccCCCCcEEEecccccccCCCCceeeEEE--EcchhHHHHH----HHhhhhcCCCCCHHhHHHHH
Q 022194          182 VLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLA--VKGERLAKEL----YFLQNAEGSGLAPFDCWICL  244 (301)
Q Consensus       182 ~~~~-----------~~~~~~di~~~S~sK~~~g~~g~~~g~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  244 (301)
                      .+..           .......++++||||.+ +.+|+|.||++  ..++.+.+.+    ...........+...+.++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~  300 (404)
T PTZ00376        222 ASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM-GLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIAD  300 (404)
T ss_pred             cCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc-cccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Confidence            4321           11123579999999999 66789999984  3344433322    22222222233444444444


Q ss_pred             ccccc----------HHHHHHHHHHHHHHHHHHHHhC
Q 022194          245 RGVKT----------MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       245 ~~l~~----------~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..++.          +.+.++++.++++.+.+.|+++
T Consensus       301 ~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  337 (404)
T PTZ00376        301 RILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKAL  337 (404)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33332          2333456677788888888875

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.91  E-value=1.9e-22  Score=180.93  Aligned_cols=222  Identities=23%  Similarity=0.289  Sum_probs=153.7

Q ss_pred             ccccCC-CCch-HHHHHHHHHhh---cCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           47 YDYTRS-GNPT-RDALESLLAKL---DKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~---~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      ..|.+. |.+. ++++.+++...   ...++++++++|++++. ++..++++||+|++++|.|..+.    ..++..|.+
T Consensus        60 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~g~~  135 (397)
T PRK07568         60 LAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYN----GFATSAGVK  135 (397)
T ss_pred             cCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHH----HHHHHcCCE
Confidence            345544 5544 56666655421   12234555555578886 55667899999999999998875    445667888


Q ss_pred             EEEecCC--------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcccc-----
Q 022194          121 VKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----  184 (301)
Q Consensus       121 ~~~~~~~--------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~-----  184 (301)
                      ++.++.+        +++++++++++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+.     
T Consensus       136 ~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~  215 (397)
T PRK07568        136 IVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYT  215 (397)
T ss_pred             EEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCcc
Confidence            8887752        358898888888999999999999999975   788999999999999999999744321     


Q ss_pred             Ccc---C-CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc----ccHHHHHHH
Q 022194          185 RPL---E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEK  256 (301)
Q Consensus       185 ~~~---~-~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~  256 (301)
                      ...   . ....+++.|+||.+ |.+|+|.|+++++++.+.+.+...... ....+...+.++...+    .++.+.++.
T Consensus       216 s~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~  293 (397)
T PRK07568        216 SALSLEGLEDRVIIIDSVSKRY-SACGARIGCLISKNKELIAAAMKLCQA-RLSPPTLEQIGAAALLDTPESYFDEVREE  293 (397)
T ss_pred             ChhhcCCCcCCEEEEecchhhc-cCCCcceEEEecCCHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhhCCHHHHHHHHHH
Confidence            111   1 24569999999999 556899999998766666554333222 2233333433333333    234556677


Q ss_pred             HHHHHHHHHHHHHhCCCc
Q 022194          257 QQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~v  274 (301)
                      +.++++.+.+.|++++++
T Consensus       294 ~~~~~~~l~~~L~~~~~~  311 (397)
T PRK07568        294 YKKRRDILYEELNKIPGV  311 (397)
T ss_pred             HHHHHHHHHHHHhcCCCc
Confidence            788888899999876544

>PRK08363 alanine aminotransferase; Validated

Probab=99.91  E-value=1.4e-22  Score=181.75  Aligned_cols=222  Identities=19%  Similarity=0.166  Sum_probs=151.6

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC--C-ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA--D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~--~-~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      .|++. |.+. ++++.+++...+|.  + +.+++++| ++++. ++..++++||.|++++|.|..+.    ..++..|..
T Consensus        65 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~  140 (398)
T PRK08363         65 YYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYT----GLVKFYGGV  140 (398)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHHcCCE
Confidence            45433 5544 66666666655453  2 34555454 68886 55667899999999999999986    445566766


Q ss_pred             EEEe-cC------CCHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-----
Q 022194          121 VKRV-NT------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----  185 (301)
Q Consensus       121 ~~~~-~~------~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----  185 (301)
                      ++.+ +.      .|++++++.+.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....+..     
T Consensus       141 ~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~  220 (398)
T PRK08363        141 PVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSP  220 (398)
T ss_pred             EEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCH
Confidence            6666 22      2678899988888999999999999999986   8889999999999999999987533221     


Q ss_pred             --ccCCCCcEEEecccccccCCCCceeeEEEE-cchhHHHHHHHhhhh---cCCCCCHHhHHH---HHc-ccccHHHHHH
Q 022194          186 --PLELGADIVMHSATKFIAGHSDVMAGVLAV-KGERLAKELYFLQNA---EGSGLAPFDCWI---CLR-GVKTMALRVE  255 (301)
Q Consensus       186 --~~~~~~di~~~S~sK~~~g~~g~~~g~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~-~l~~~~~~~~  255 (301)
                        .......+++.||||++ +.+|+|.||+++ .++.+.+.+......   .....+...+.+   ++. ..+.+.+.++
T Consensus       221 ~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~  299 (398)
T PRK08363        221 GSLTKDVPVIVMNGLSKVY-FATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMK  299 (398)
T ss_pred             HHcCcCCcEEEEecchhcc-CCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHH
Confidence              11223578899999998 457899999998 334443333222111   112233333333   232 2234566677


Q ss_pred             HHHHHHHHHHHHHHhCCCc
Q 022194          256 KQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~v  274 (301)
                      ++.++.+.+.+.|++++++
T Consensus       300 ~~~~~~~~l~~~L~~~~~~  318 (398)
T PRK08363        300 KLKERRDYIYKRLNEIPGI  318 (398)
T ss_pred             HHHHHHHHHHHHHhcCCCC
Confidence            8888888899999887554

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.91  E-value=8.6e-24  Score=186.97  Aligned_cols=242  Identities=18%  Similarity=0.260  Sum_probs=165.2

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecchH-HHHH-HHHh
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTH   88 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~-~~~~   88 (301)
                      ..++|+...+++|+.  |.+.......  ...  ...|...|   ..++++.++++++.+ +.+++++|+ +++. ++..
T Consensus        30 ~~i~l~~nen~~~~~--~~v~~a~~~~--~~~--~~~Yp~~g---~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~  100 (366)
T PRK01533         30 SFVKLASNENPFGCS--PRVLDELQKS--WLD--HALYPDGG---ATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRA  100 (366)
T ss_pred             ceEEeCCCCCCCCCC--HHHHHHHHHH--HHh--cCcCCCCC---HHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH
Confidence            568888555666643  4333322111  111  11233223   466888888888765 567777775 8886 5566


Q ss_pred             ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 022194           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (301)
Q Consensus        89 ~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l  164 (301)
                      ++++||+|++++|.|..+.    ..+...|.+++.++.+    |+++++++++++++++++++|+||||.+.+.+++.++
T Consensus       101 l~~~gd~vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l  176 (366)
T PRK01533        101 VLKAGDNIVTAGATFPQYR----HHAIIEGCEVKEVALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQF  176 (366)
T ss_pred             hcCCCCEEEEcCCcHHHHH----HHHHHcCCEEEEeecCCCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHH
Confidence            7899999999999999886    5556778999888864    7899999998889999999999999999886655555


Q ss_pred             ---HHHcCCEEEEeCCcCCcccc--------CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCC
Q 022194          165 ---AHAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  233 (301)
Q Consensus       165 ---~~~~~~~li~D~~~~~~~~~--------~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~  233 (301)
                         |++++ ++|+||+|......        .....+..+++.||||.| |.+|+|.||++++ +.+.+.+....  ..+
T Consensus       177 ~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiG~~i~~-~~~~~~l~~~~--~~~  251 (366)
T PRK01533        177 IEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAY-GLASFRVGYAVGH-EELIEKLNVVR--LPF  251 (366)
T ss_pred             HHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHh-cChHHHHhHHhCC-HHHHHHHHHhc--CCC
Confidence               44544 67889998632221        111235689999999999 6678999999986 45666555443  235


Q ss_pred             CCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          234 GLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       234 ~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..+...+.++...++.   ..+.++...++.+++.+.++.+
T Consensus       252 ~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~  292 (366)
T PRK01533        252 NVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKEN  292 (366)
T ss_pred             CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5667666666666543   3344455566666677777654

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.91  E-value=6e-23  Score=184.09  Aligned_cols=213  Identities=23%  Similarity=0.326  Sum_probs=170.5

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHHHHHHhccCCCCeEEEcCCCC---ccHHHHHhhhcccCCcEEEEecC---CC
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLY---GGTDRLLSRVTPKTGVVVKRVNT---CD  128 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~~~~~g~~Vlv~~~~y---~~~~~~~~~~~~~~g~~~~~~~~---~d  128 (301)
                      ...+.+++.+++++|++.++++++|++|+.+++..+.+||+|++++..|   ++..+. ...++..|+++++++.   .+
T Consensus       122 ~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l~~GdeVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v~~~~~~~  200 (454)
T TIGR00474       122 SRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEVGTTNRTH  200 (454)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCcCEEEECCChhhhhcchhhH-HHHHHHcCCEEEEeCCCCCCC
Confidence            3478999999999999999999999999876667789999999998764   343333 3556778999999986   47


Q ss_pred             HHHHHhhcCCCceEEEEeCCCCCc--c--ccccHHHHHHHHHHcCCEEEEeCCcCC---------cc---ccCccCCCCc
Q 022194          129 LDEVASAIGPWTKLVWVESPTNPR--Q--QICDIRKIAEMAHAHGALLLVDNSIMS---------PV---LSRPLELGAD  192 (301)
Q Consensus       129 ~~~l~~~l~~~~~~v~i~~~~np~--G--~~~~l~~l~~l~~~~~~~li~D~~~~~---------~~---~~~~~~~~~d  192 (301)
                      ++++++++++++++|++.+++|++  |  ...|+++|+++||++|+++++|.+.+.         +.   ...+.+.|+|
T Consensus       201 l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaD  280 (454)
T TIGR00474       201 LKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVD  280 (454)
T ss_pred             HHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCC
Confidence            899999999999999999999984  6  478999999999999999999986332         11   1245567999


Q ss_pred             EEEecccccccCCCCceeeEEEEcchhH--------HHHHH-------HhhhhcCCCCCHHhHHHHHcccccHHHHHHHH
Q 022194          193 IVMHSATKFIAGHSDVMAGVLAVKGERL--------AKELY-------FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ  257 (301)
Q Consensus       193 i~~~S~sK~~~g~~g~~~g~~~~~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  257 (301)
                      ++++|.+|+++||   ++|+++++++.+        .+.++       ......+..+.+..++..+.+++.+..+.+++
T Consensus       281 iv~fSg~K~LgGp---~~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~  357 (454)
T TIGR00474       281 LVTFSGDKLLGGP---QAGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEEL  357 (454)
T ss_pred             EEEecCccccCCC---eEEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHH
Confidence            9999999999876   479999886544        22222       23344556677777888888899998899999


Q ss_pred             HHHHHHHHHHHHhC
Q 022194          258 QDNAQKIAEFLASH  271 (301)
Q Consensus       258 ~~~~~~l~~~l~~~  271 (301)
                      .++++.+.++|++.
T Consensus       358 ~~~A~~la~~L~~~  371 (454)
T TIGR00474       358 RARAERLAKRLKAA  371 (454)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999874

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.91  E-value=6.1e-23  Score=182.11  Aligned_cols=211  Identities=16%  Similarity=0.123  Sum_probs=154.3

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------  127 (301)
                      +...++++.+++++|.++.+++++|++++. ++.+++++||+|+++.+.|.+..    ..++..|++++.++.+      
T Consensus        51 ~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~----~~~~~~g~~~~~~~~~~~~~~~  126 (370)
T TIGR02539        51 PPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSY----VAAERAGLNVKEVPHTGHPEYK  126 (370)
T ss_pred             hHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHH----HHHHHcCCEEEEEecCCcccCC
Confidence            357788888999999998888888888885 66777899999999888887664    3456788899888864      


Q ss_pred             -CHHHHHhhcCC-------CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecc
Q 022194          128 -DLDEVASAIGP-------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (301)
Q Consensus       128 -d~~~l~~~l~~-------~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~  198 (301)
                       |++++++++++       ++++|++++|+||+|...|+++|+++|+++|+++|+|++|+.+..+ .....+.|++++|+
T Consensus       127 ~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~  206 (370)
T TIGR02539       127 VDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSG  206 (370)
T ss_pred             cCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeC
Confidence             89999998852       6789999999999999999999999999999999999999987544 33345789999999


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHHhhhhcC--------CCCCHHhHHHHHcccccHH---HHHHHHHHHHHHHHHH
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG--------SGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEF  267 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~~~  267 (301)
                      ||++++ ++ +.|++++++ .+.+.+......+.        .+.......+...+++...   ++..+..++.+++++.
T Consensus       207 sK~~~~-~g-~~G~l~~~~-~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~  283 (370)
T TIGR02539       207 HKSMAA-SG-PCGVLGMSE-EWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAE  283 (370)
T ss_pred             cccccC-CC-CEEEEEECH-HHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999964 33 579998875 45554443322111        1111112222233333211   2233445556789999


Q ss_pred             HHhCC
Q 022194          268 LASHP  272 (301)
Q Consensus       268 l~~~~  272 (301)
                      |++..
T Consensus       284 L~~~g  288 (370)
T TIGR02539       284 LEDIG  288 (370)
T ss_pred             HHhCC
Confidence            98763

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.91  E-value=1.6e-22  Score=179.18  Aligned_cols=213  Identities=22%  Similarity=0.296  Sum_probs=153.4

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC----CceEEecchH-HHHHHH-Hhc-cCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGM-AALAAV-THL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~-~ai~~~-~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      .|... |.+. ++++.+++.+.+|.    ++.+++++|+ +++..+ ..+ +++||+|++++|.|..+.    ..++..|
T Consensus        57 ~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~----~~~~~~g  132 (364)
T PRK07865         57 GYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYE----VGARLAG  132 (364)
T ss_pred             CCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHH----HHHHhcC
Confidence            56554 7655 88888888877553    2567777775 888654 445 689999999999999886    4556678


Q ss_pred             cEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-------c--
Q 022194          119 VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-------P--  186 (301)
Q Consensus       119 ~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-------~--  186 (301)
                      +++..++  +.++++   ..++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....+..       +  
T Consensus       133 ~~~~~~~--~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  207 (364)
T PRK07865        133 ATVVRAD--SLTELG---PQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRV  207 (364)
T ss_pred             CEEEecC--ChhhCC---cccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccc
Confidence            8887775  444443   267899999999999999975   6789999999999999999987533221       0  


Q ss_pred             --cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc---HHHHHHHHHHHH
Q 022194          187 --LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNA  261 (301)
Q Consensus       187 --~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~  261 (301)
                        ......+++.||||.+ +.+|+|.||++++ +.+.+.+.......+...+...+.++...++.   +.+.++.+.++.
T Consensus       208 ~~~~~~~~i~~~S~SK~~-~~~GlRiG~i~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  285 (364)
T PRK07865        208 CGGDHTGLLAVHSLSKQS-NLAGYRAGFVAGD-PALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRR  285 (364)
T ss_pred             cCCccceEEEEeechhcc-CCCceeeEEEecC-HHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence              0123579999999999 5578999999876 45656565555444555555555555554443   445566777778


Q ss_pred             HHHHHHHHhC
Q 022194          262 QKIAEFLASH  271 (301)
Q Consensus       262 ~~l~~~l~~~  271 (301)
                      +.+.+.|+++
T Consensus       286 ~~l~~~L~~~  295 (364)
T PRK07865        286 AVLRPALEAA  295 (364)
T ss_pred             HHHHHHHHHc
Confidence            8888888774

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.91  E-value=1.8e-22  Score=180.02  Aligned_cols=210  Identities=20%  Similarity=0.192  Sum_probs=149.5

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-------
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-------  126 (301)
                      ..+++++++++++.+  ++++++++++++. ++..++.+||+|++++|.|..+.    ..++..|.+++.++.       
T Consensus        68 ~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~  143 (380)
T PRK06225         68 FPELRELILKDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIID----NFASRFGAEVIEVPIYSEECNY  143 (380)
T ss_pred             hHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHHhCceEEeeccccccCCc
Confidence            677888888888765  4556666678886 55567889999999999998775    555677888887764       


Q ss_pred             -CCHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----ccCCCCcEEEecc
Q 022194          127 -CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----PLELGADIVMHSA  198 (301)
Q Consensus       127 -~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----~~~~~~di~~~S~  198 (301)
                       .|++.+++.+.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|.......    ......++++.||
T Consensus       144 ~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~  223 (380)
T PRK06225        144 KLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSF  223 (380)
T ss_pred             cCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeec
Confidence             1678999999888999999999999999864   8889999999999999999985321111    1122467899999


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc---c-HHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---T-MALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~-~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                      ||++ |++|+|.|++++++ .+.+.+..... ...+.+...+.++...++   . +.+.++...++.+.+.+.|+++++
T Consensus       224 SK~~-g~~G~RiG~i~~~~-~l~~~~~~~~~-~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  299 (380)
T PRK06225        224 SKIF-GMAGLRIGAVVATP-DLIEVVKSIVI-NDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEG  299 (380)
T ss_pred             hhhc-CCccceeEEEecCH-HHHHHHHHHHh-cccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            9999 77789999999875 45565544332 223334444333333322   2 233334445556667778877554

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.91  E-value=1.5e-22  Score=178.53  Aligned_cols=245  Identities=14%  Similarity=0.237  Sum_probs=167.1

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecchH-HHHHHHHhc
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHL   89 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~~~~~~   89 (301)
                      .+++|+...+..+.  +|.+.........    ....|..   +...++++.++++++.+ +.+++++|+ +++..+...
T Consensus        20 ~~~~l~~~~~~~~~--p~~~~~a~~~~~~----~~~~Y~~---~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~   90 (354)
T PRK06358         20 MILDFSANINPLGV--PESLKQAITENLD----KLVEYPD---PDYLELRKRIASFEQLDLENVILGNGATELIFNIVKV   90 (354)
T ss_pred             ceEEecCCCCCCCC--CHHHHHHHHHHHH----hhhcCCC---ccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH
Confidence            46888854455554  3433332111111    1223432   33568888888888765 566666665 888765555


Q ss_pred             cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HH
Q 022194           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IR  159 (301)
Q Consensus        90 ~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~  159 (301)
                      +.+ +.|++++|.|+.+.    ..++..|.+++.++.+       | +++++.+.++++++++++|+||||.+.+   ++
T Consensus        91 ~~~-~~v~i~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~  164 (354)
T PRK06358         91 TKP-KKVLILAPTFAEYE----RALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMK  164 (354)
T ss_pred             hCC-CcEEEecCChHHHH----HHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHH
Confidence            655 68999999999886    4556778888888753       3 4555566667999999999999999986   78


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCccccC--------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhc
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVLSR--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  231 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~~~--------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~  231 (301)
                      +|+++|+++++++|+||+|.......        .......+++.||||.+ |.+|+|.||++++++.+.+.+.....  
T Consensus       165 ~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-gl~G~RiG~lv~~~~~~~~~~~~~~~--  241 (354)
T PRK06358        165 KILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFF-AIPGLRLGYGLTSNKNLAEKLLQMRE--  241 (354)
T ss_pred             HHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhc-cCcchhheeeecCCHHHHHHHHHhCC--
Confidence            89999999999999999997543321        11234679999999999 66789999999876666665554433  


Q ss_pred             CCCCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          232 GSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       232 ~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      .+..+...+.++...++   .+.+.++.+.++++.+.+.|++++++
T Consensus       242 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  287 (354)
T PRK06358        242 PWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGI  287 (354)
T ss_pred             CCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            34445555555544443   24556677788888899999887553

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.91  E-value=1.6e-23  Score=185.48  Aligned_cols=240  Identities=17%  Similarity=0.232  Sum_probs=161.9

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEe-cchH-HHHH-HHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCF-TSGM-AALA-AVT   87 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~-~sG~-~ai~-~~~   87 (301)
                      .+++|+.+.+++|.  +|.+......  ...  ....|.   .+...++++.++++++.+ +.+++ ++|+ +++. ++.
T Consensus        35 ~~i~l~~~~~~~~~--~~~~~~~~~~--~~~--~~~~y~---~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~  105 (361)
T PRK00950         35 SIIKLGSNENPLGP--SPKAVEAIEK--ELS--KIHRYP---EPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMR  105 (361)
T ss_pred             ceEEccCCCCCCCC--CHHHHHHHHH--HHH--hhcCCC---CCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHH
Confidence            78999955567873  3444332111  100  111232   233588889999998875 34555 7786 6675 455


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~  162 (301)
                      .++++||+|++++|.|..+.    ..++..|.+++.++.+     |++++++.+.++++++++++|+||||.+.+.+++.
T Consensus       106 ~~~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~  181 (361)
T PRK00950        106 TFIDPGDEVIIPTPTFSYYE----ISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIR  181 (361)
T ss_pred             HhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHH
Confidence            56789999999999998775    4456778888888643     68899998888899999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCccccC----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHH
Q 022194          163 EMAHAHGALLLVDNSIMSPVLSR----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (301)
Q Consensus       163 ~l~~~~~~~li~D~~~~~~~~~~----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (301)
                      ++|+++|+++|+||+|.......    ....+..++++||||.+ |.+|+|.|++++++ .+.+.+.....  ....+..
T Consensus       182 ~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~-~~~~~~~~~~~--~~~~~~~  257 (361)
T PRK00950        182 KILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVF-GLAGLRIGYGFVPE-WLIDYYMRAKT--PFSLTRL  257 (361)
T ss_pred             HHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhh-cCchhhcchhcCCH-HHHHHHHHhcC--CCCCCHH
Confidence            99999999999999996432111    11224568999999999 56789999999875 45554444332  2334555


Q ss_pred             hHHHHHccccc---HHHHHHHHHHHHHHHHHHH
Q 022194          239 DCWICLRGVKT---MALRVEKQQDNAQKIAEFL  268 (301)
Q Consensus       239 ~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l  268 (301)
                      ....+...+..   +.+..++..++++++.+.|
T Consensus       258 ~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l  290 (361)
T PRK00950        258 SQAAAIAALSDKEYIEKSIEHGIKSREYLYNEL  290 (361)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhc
Confidence            55554444443   3333344444444455444

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.91  E-value=1.2e-22  Score=180.85  Aligned_cols=218  Identities=23%  Similarity=0.226  Sum_probs=160.8

Q ss_pred             chHHHHHHHHHhhcCCC---ceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---
Q 022194           55 PTRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~---~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---  127 (301)
                      +..+++++.++++++.+   ++++++++++++. ++.+++++||+|+++.+.|+++...+...++..|.+++.++.+   
T Consensus        44 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  123 (376)
T TIGR01977        44 REVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEG  123 (376)
T ss_pred             HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCC
Confidence            34788999999999875   3445556678885 6666789999999999999888766666777778999888754   


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccC
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (301)
                        |++++++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++++.|... +....++|++++|++|++++
T Consensus       124 ~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~  203 (376)
T TIGR01977       124 LISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLG  203 (376)
T ss_pred             CcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccC
Confidence              789999999889999999999999999999999999999999999999999988764 33456899999999999988


Q ss_pred             CCCceeeEEEEcchhHHHHHHHhh----------------hhcCCCCCHHhHHHHHcccccH-----HHHHHHHHHHHHH
Q 022194          205 HSDVMAGVLAVKGERLAKELYFLQ----------------NAEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQK  263 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~  263 (301)
                      |.|.  |+++.+++.....+....                .....+.+.....++..+++.+     +...++..+.+++
T Consensus       204 p~g~--g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~  281 (376)
T TIGR01977       204 PQGT--GGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEK  281 (376)
T ss_pred             CCCc--eEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            8774  555555543211111000                0001122333333334444433     3445677788888


Q ss_pred             HHHHHHhCCCc
Q 022194          264 IAEFLASHPRV  274 (301)
Q Consensus       264 l~~~l~~~~~v  274 (301)
                      +.+.|++.+++
T Consensus       282 ~~~~l~~~~~~  292 (376)
T TIGR01977       282 LLNGLREINKV  292 (376)
T ss_pred             HHHHHhcCCCe
Confidence            88888877654

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.91  E-value=1.9e-22  Score=168.97  Aligned_cols=230  Identities=20%  Similarity=0.173  Sum_probs=170.1

Q ss_pred             CCCCCCccccCC-CCch-HHHHHHHHHhhcC----CCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhh
Q 022194           41 ATENGPYDYTRS-GNPT-RDALESLLAKLDK----ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRV  113 (301)
Q Consensus        41 ~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~----~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~  113 (301)
                      .......+|++. |.+. |+++.+.+.+-..    ++++++++++++||. ++..+.+||..||++.|.|+-|.    ..
T Consensus        91 l~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~----~~  166 (447)
T KOG0259|consen   91 LRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYD----TR  166 (447)
T ss_pred             HhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHH----Hh
Confidence            345566678887 7754 8888888766543    345555555579995 78888999999999999999885    67


Q ss_pred             cccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccc
Q 022194          114 TPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (301)
Q Consensus       114 ~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~  183 (301)
                      +...|+++++++.-       |++.+|+.++++|.++++.+|+||+|.++.   +++|++.|+++++++|.||+|+..++
T Consensus       167 a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vf  246 (447)
T KOG0259|consen  167 AIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVF  246 (447)
T ss_pred             hhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeec
Confidence            78889999999853       899999999999999999999999999975   99999999999999999999987666


Q ss_pred             cCc--------cCCCCcEEEecccccccCCCCceeeEEEEcchh--HHH--HHHHhhhhcCC--CCCHHhHHHH----Hc
Q 022194          184 SRP--------LELGADIVMHSATKFIAGHSDVMAGVLAVKGER--LAK--ELYFLQNAEGS--GLAPFDCWIC----LR  245 (301)
Q Consensus       184 ~~~--------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~--~~~--~~~~~~~~~~~--~~~~~~~~~~----~~  245 (301)
                      ++-        ...-..+.++++||-+-- ||.|.||++..+..  +..  .+..+......  ......+.++    .+
T Consensus       247 g~~pfvpmg~fssiVPVitlggisKrW~V-PGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~k  325 (447)
T KOG0259|consen  247 GDKPFVPMGKFSSIVPVITLGGISKRWIV-PGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEK  325 (447)
T ss_pred             CCCCccchhhccccCceEeeccccccccc-CCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHh
Confidence            421        112247899999998844 67899999987643  111  11233333222  2222333332    22


Q ss_pred             cccc-HHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          246 GVKT-MALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       246 ~l~~-~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      .-+. +......+..+++...+.|+++|.+.
T Consensus       326 Tp~efF~k~~~~lk~na~l~y~~Lk~IP~l~  356 (447)
T KOG0259|consen  326 TPEEFFDKKLSFLKSNADLCYSRLKDIPCLT  356 (447)
T ss_pred             ChHHHHHHHHHHHHhhHHHHHHHHhcCCCcc
Confidence            2222 45666778889999999999998865

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.91  E-value=1.1e-22  Score=178.03  Aligned_cols=230  Identities=17%  Similarity=0.205  Sum_probs=162.8

Q ss_pred             CCCCCCccccCeeecceeecCCCCCCCCccccCCCC-chHHHHHHHHHhhcCC--CceEEecchHHHHH-HHHhccCCCC
Q 022194           19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-PTRDALESLLAKLDKA--DRALCFTSGMAALA-AVTHLLGTGE   94 (301)
Q Consensus        19 ~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~-~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~-~~~~~~~~g~   94 (301)
                      -|||+|++.+|.+.......-+       .|+  |. +..+++++.+++++|.  +++++++||++|+. ++.+++++||
T Consensus        26 ~~~ylgl~~~~~~~~~~~~~~~-------~~~--g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd   96 (346)
T TIGR03576        26 LYDLTGLAGGFKIDEEDLELLE-------TYV--GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGR   96 (346)
T ss_pred             ccccccCCCChhHHHHHHHHHH-------Hhc--CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCC
Confidence            4899999999998876322111       121  44 4499999999999998  67888888889985 7777899999


Q ss_pred             eEEEcC---CCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccc---ccHHHHHHHHHHc
Q 022194           95 EIVAGD---DLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI---CDIRKIAEMAHAH  168 (301)
Q Consensus        95 ~Vlv~~---~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~---~~l~~l~~l~~~~  168 (301)
                      +|+++.   |.|..+.    ..++..|.++..  ..++++++.  .+++++|+++. .+++|.+   .++++|+++|+++
T Consensus        97 ~Vli~~~d~p~~~s~~----~~~~l~ga~~~~--~~~l~~l~~--~~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~  167 (346)
T TIGR03576        97 KVVHYLPEKPAHPSIP----RSCKLAGAEYFE--SDELSELKK--IDGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSK  167 (346)
T ss_pred             EEEECCCCCCCchhHH----HHHHHcCCEEec--cCCHHHHhh--CcCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHc
Confidence            999753   5666654    445556666533  345666433  24678888865 5889998   5799999999999


Q ss_pred             CCEEEEeCCcCCcccc---C--ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHH
Q 022194          169 GALLLVDNSIMSPVLS---R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (301)
Q Consensus       169 ~~~li~D~~~~~~~~~---~--~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (301)
                      |+++++||+|+.+...   .  ....+.|+++.|+||++.|   .++|++++++ .+.+.+.........+.++..++++
T Consensus       168 ~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG---~r~G~v~~~~-~li~~l~~~~~~~~~s~~~~~~~aa  243 (346)
T TIGR03576       168 EAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDG---PRGGLLAGRK-ELVDKIKSVGEQFGLEAQAPLLAAV  243 (346)
T ss_pred             CCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccc---cceEEEEeCH-HHHHHHHHhhcCcccCccHHHHHHH
Confidence            9999999999876532   1  1234578999999997643   4789999875 5666666655544444566666666


Q ss_pred             HcccccH--HHHHHHHHHHHHHHHHHHHh
Q 022194          244 LRGVKTM--ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       244 ~~~l~~~--~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ..+++..  .+.++.+.++.+.+.+.++.
T Consensus       244 ~~aL~~~~~~~~~~~l~~r~~~~~~~l~~  272 (346)
T TIGR03576       244 VRALEEFELSRIRDAFKRKEEVYLRLFDK  272 (346)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHh
Confidence            6666543  34456666666666666654

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=3.7e-23  Score=182.84  Aligned_cols=249  Identities=18%  Similarity=0.199  Sum_probs=170.5

Q ss_pred             cceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEecchH-HHHH-H
Q 022194           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGM-AALA-A   85 (301)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~--~~i~~~sG~-~ai~-~   85 (301)
                      ...+++|+...++++  .+|.+......  .........|..   +...++++.++++++.+  +.+++++|+ +++. +
T Consensus        25 ~~~~i~l~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~Y~~---~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~   97 (356)
T PRK04870         25 ATGMVKLDAMENPYR--LPAELRAELGE--RLAEVALNRYPD---PRAAALKAALRAAMGVPAGADVLLGNGSDELIQLL   97 (356)
T ss_pred             CCCceeCcCCCCCCC--CCHHHHHHHHH--HhhccccccCCC---CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHH
Confidence            456788875555555  33444333211  111111233443   23577888888888764  367777886 7776 4


Q ss_pred             HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcC-CCceEEEEeCCCCCccccccHH
Q 022194           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQICDIR  159 (301)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~  159 (301)
                      +..++++||+|++++|.|..+.    ..++..|++++.++.+     |++++++.+. .++++|++++|+||||.+.+.+
T Consensus        98 ~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~  173 (356)
T PRK04870         98 ALACAKPGATVLAPEPGFVMYR----MSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDA  173 (356)
T ss_pred             HHHhcCCCCEEEECCCCHHHHH----HHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHH
Confidence            4557799999999999999875    5667889999988764     6899999886 5899999999999999999988


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCcccc----CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCC
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  235 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
                      ++.++++..++++|+||+|......    .....+..+++.|+|| + +.+|+|.|++++++ .+.+.+.....  .+..
T Consensus       174 ~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~-~~~GlRiG~~i~~~-~~i~~~~~~~~--~~~~  248 (356)
T PRK04870        174 DVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-L-GLAGLRLGYLAGHP-AWIAELDKVRP--PYNV  248 (356)
T ss_pred             HHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-h-hhHHHhhhhhhCCH-HHHHHHHHccC--CCcC
Confidence            8888777768999999998643221    1122346799999999 6 67889999999875 45554444332  2334


Q ss_pred             CHHhHHHHHccc---ccHHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          236 APFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       236 ~~~~~~~~~~~l---~~~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      +...+.++...+   +.+.+.++++.++++.+.+.|++++++
T Consensus       249 ~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  290 (356)
T PRK04870        249 NVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGV  290 (356)
T ss_pred             CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            444444433333   334556677778888888888887665

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.91  E-value=1.5e-22  Score=180.88  Aligned_cols=252  Identities=23%  Similarity=0.230  Sum_probs=173.5

Q ss_pred             cceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccC-CCC-chHHHHHHHHHhhcCCCceEEecchHHHH-HHH
Q 022194           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGN-PTRDALESLLAKLDKADRALCFTSGMAAL-AAV   86 (301)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~-~g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai-~~~   86 (301)
                      ...+++|. +++++|..++|.+.......-.........+.. .|. +..+++++.++++++.++.+++++|++++ .++
T Consensus        38 g~~~id~~-~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l  116 (385)
T PRK05958         38 GRRMLNFA-SNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVL  116 (385)
T ss_pred             CceEEEee-CCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHH
Confidence            36889999 677888866665554332211100000001111 133 44899999999999988889999998765 455


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC---CceEEEEeCCCCCccccccHHHHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAE  163 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~v~i~~~~np~G~~~~l~~l~~  163 (301)
                      ..++++||+|+++++.|+.+..    .+...|.+++.++..|++++++.+++   ++.+++++++.|++|...++++|++
T Consensus       117 ~~~~~~gd~V~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~  192 (385)
T PRK05958        117 TALAGKGDLIVSDKLNHASLID----GARLSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVA  192 (385)
T ss_pred             HHhCCCCCEEEEeCccCHHHHH----HHHhcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHH
Confidence            6778999999999999988763    34556788888888899999998864   3667777789999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCccccC----------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh--hhc
Q 022194          164 MAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAE  231 (301)
Q Consensus       164 l~~~~~~~li~D~~~~~~~~~~----------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~--~~~  231 (301)
                      +|+++|+++|+||+|+.+.+..          ......++++.|+||+++ ++   +|+++.+ +.+.+.+....  ...
T Consensus       193 ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~---Gg~~~~~-~~~~~~~~~~~~~~~~  267 (385)
T PRK05958        193 LARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALG-SS---GAAVLGS-ETLIDYLINRARPFIF  267 (385)
T ss_pred             HHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcc-cC---CcEEEcC-HHHHHHHHHhCcccee
Confidence            9999999999999997654321          111234689999999994 43   3777766 44555443222  112


Q ss_pred             CCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhC
Q 022194          232 GSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       232 ~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +...++....++..+++.+   .+..+++.++.+++.+.|++.
T Consensus       268 ~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (385)
T PRK05958        268 TTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRAL  310 (385)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            2334455544444444332   456677888888888888864

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=1.1e-22  Score=180.67  Aligned_cols=207  Identities=18%  Similarity=0.187  Sum_probs=152.6

Q ss_pred             HHHHHHHHhhcCCC-ceEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CH
Q 022194           58 DALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DL  129 (301)
Q Consensus        58 ~~l~~~l~~~~~~~-~~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~  129 (301)
                      .++++.++++++.+ +.+++++|+ +++. ++..++++||+|++..|.|+.+.    ..++..|++++.++.+     |+
T Consensus        74 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~  149 (371)
T PRK05166         74 RALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHE----DYPTMMGARVERVTVTPDLGFDL  149 (371)
T ss_pred             HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCeEEEeecCCCCCCCH
Confidence            47888888888865 567777775 8886 55667899999999999998875    5556788899888764     68


Q ss_pred             HHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCccccC--------ccC-CCCcEEEecc
Q 022194          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSR--------PLE-LGADIVMHSA  198 (301)
Q Consensus       130 ~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~--~~~~li~D~~~~~~~~~~--------~~~-~~~di~~~S~  198 (301)
                      +++++.+++++++|++++|+||||.+.+.+++.++++.  .++++|+||+|.......        ... ....+++.||
T Consensus       150 ~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~Sf  229 (371)
T PRK05166        150 DALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTF  229 (371)
T ss_pred             HHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeec
Confidence            99999998888999999999999999987666666553  489999999987443211        011 2357999999


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc---ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ||.| |.+|+|.||++.+++.+.+.+.....  ....+...+.++...+   ..+++.++.+.++++.+.+.|+++
T Consensus       230 SK~~-~l~GlRiG~~i~~~~~l~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  302 (371)
T PRK05166        230 SKAY-GLAGLRVGYGLVSDPELVGLLDRVRT--PFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM  302 (371)
T ss_pred             hHhh-hcchhheeeeecCCHHHHHHHHHhcc--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999 66789999988766677666554432  2334555444443333   235555667777788888998876

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.91  E-value=1.8e-22  Score=181.04  Aligned_cols=215  Identities=19%  Similarity=0.172  Sum_probs=155.6

Q ss_pred             HHHHHHHHHhhcCCC--ceEEe-cchHHHHHHH-Hhc----cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDKAD--RALCF-TSGMAALAAV-THL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~-~sG~~ai~~~-~~~----~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      .+++++.+++++|.+  +.+++ +++++++..+ ..+    +++||+|+++++.|++....+...++..|++++.++.+ 
T Consensus        62 ~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~  141 (398)
T TIGR03392        62 YELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA  141 (398)
T ss_pred             HHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC
Confidence            677889999999873  44554 4456888644 444    47899999999999986655666778889999998764 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          |++++++++++++++|++++++||||.+.|+++|+++|+++|+++++|++|+.+... +....++|++++|+||.+
T Consensus       142 ~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~  221 (398)
T TIGR03392       142 DLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLY  221 (398)
T ss_pred             CCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEeccccc
Confidence                789999999989999999999999999999999999999999999999999876554 233457899999999977


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhh---------------------hhcCCCCCHHhHHHHHccccc-----HHHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQ---------------------NAEGSGLAPFDCWICLRGVKT-----MALRVEK  256 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~  256 (301)
                       ||+|  .|+++.+++ +.+.+....                     .....+.+......+..+++.     +.+..++
T Consensus       222 -gp~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~  297 (398)
T TIGR03392       222 -GPTG--IGVLYGKTE-LLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAW  297 (398)
T ss_pred             -CCCc--eEEEEEcHH-HHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence             7777  588887754 333332111                     000112222233333333332     2334456


Q ss_pred             HHHHHHHHHHHHHhCCCcc
Q 022194          257 QQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~v~  275 (301)
                      ..+.++++.+.|++++++.
T Consensus       298 ~~~l~~~l~~~l~~l~g~~  316 (398)
T TIGR03392       298 SVSLADLAEERLAQLPGFR  316 (398)
T ss_pred             HHHHHHHHHHHHhcCCCeE
Confidence            6667778888888776654

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.91  E-value=1.9e-22  Score=180.63  Aligned_cols=220  Identities=17%  Similarity=0.127  Sum_probs=150.2

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC---CceE--Eecch-HHHHHHHH---hccCCCCeEEEcCCCCccHHHHHhhhcc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA---DRAL--CFTSG-MAALAAVT---HLLGTGEEIVAGDDLYGGTDRLLSRVTP  115 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~---~~~i--~~~sG-~~ai~~~~---~~~~~g~~Vlv~~~~y~~~~~~~~~~~~  115 (301)
                      ..|++. |.+. |+++.+++.+..+.   ++.+  ++|+| ++++..+.   ..++|||+|++++|.|+.+.    ..++
T Consensus        63 ~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~----~~~~  138 (396)
T PRK09257         63 KNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHR----AIFE  138 (396)
T ss_pred             CCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHH----HHHH
Confidence            357766 7766 88888887765432   2333  66666 58886443   23589999999999999997    6667


Q ss_pred             cCCcEEEEecC---C----CHHHHHhhcC---CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcc
Q 022194          116 KTGVVVKRVNT---C----DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (301)
Q Consensus       116 ~~g~~~~~~~~---~----d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~  182 (301)
                      ..|.+++.++.   +    |++.+++.++   .+..++++++||||||.+.+   +++|+++|++||+++|+||+|....
T Consensus       139 ~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~  218 (396)
T PRK09257        139 AAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFG  218 (396)
T ss_pred             HcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccc
Confidence            78888888874   1    6788888875   33566677999999999975   7889999999999999999997544


Q ss_pred             cc-C----c----c-CCCCcEEEecccccccCCCCceeeEEEE--cchh----HHHHHHHhhhhcCCCCCHHhHHHHHcc
Q 022194          183 LS-R----P----L-ELGADIVMHSATKFIAGHSDVMAGVLAV--KGER----LAKELYFLQNAEGSGLAPFDCWICLRG  246 (301)
Q Consensus       183 ~~-~----~----~-~~~~di~~~S~sK~~~g~~g~~~g~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (301)
                      .. .    +    . .....++++||||.+ +++|+|.||+++  .++.    +...+...........+...+.++...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  297 (396)
T PRK09257        219 DGLEEDAYGLRAFAAAGLELLVASSFSKNF-GLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATI  297 (396)
T ss_pred             cchHHHHHHHHHHHhcCCcEEEEEEcCCcC-ccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHH
Confidence            31 0    0    1 123579999999999 777999999974  3322    222222222222233344443333322


Q ss_pred             c----------ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          247 V----------KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       247 l----------~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +          +++.+.++.+.++++.+.+.|+++
T Consensus       298 l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~  332 (396)
T PRK09257        298 LNDPELRAEWEAELEEMRERIKAMRQLLVEALKAK  332 (396)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2          223455677788888888888875

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=1.5e-22  Score=179.13  Aligned_cols=216  Identities=20%  Similarity=0.202  Sum_probs=153.1

Q ss_pred             CCCchHHHHHHHHHhhcCCC-ceEEecch-HHHHH-HHHhccCCC-CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC
Q 022194           52 SGNPTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (301)
Q Consensus        52 ~g~~~~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~-~~~~~~~~g-~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~  127 (301)
                      ++.+...++++.++++++.+ +.+++++| ++++. ++..++.+| |.|++++|.|..+.    ..++..|.+++.++.+
T Consensus        56 Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~----~~~~~~g~~~~~v~~~  131 (364)
T PRK04781         56 YPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYA----VCARLQNAPLVEVPLV  131 (364)
T ss_pred             CCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEEecC
Confidence            33444678889999988875 46667666 58886 556677888 79999999987664    4456678888888752


Q ss_pred             --------CHHHHHhhc-CCCceEEEEeCCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCccccC-----ccCCCC
Q 022194          128 --------DLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSR-----PLELGA  191 (301)
Q Consensus       128 --------d~~~l~~~l-~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~--~~~~li~D~~~~~~~~~~-----~~~~~~  191 (301)
                              |++++++.+ .+++++|++++|+||||.+.+.+++.++++.  +++++|+||+|.......     ......
T Consensus       132 ~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~  211 (364)
T PRK04781        132 DGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDN  211 (364)
T ss_pred             CCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCC
Confidence                    456665444 5789999999999999999998887777764  479999999997543211     123356


Q ss_pred             cEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc-----cHHHHHHHHHHHHHHHHH
Q 022194          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAE  266 (301)
Q Consensus       192 di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~  266 (301)
                      .+++.||||+| |.+|+|.||+++++ .+.+.+......  +..+...+.++...+.     ...+.++++.++++.+.+
T Consensus       212 vi~~~SfSK~~-gl~GlRvGy~v~~~-~l~~~l~~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~  287 (364)
T PRK04781        212 LAVLRTLSKAH-ALAAARIGSLIANA-ELIAVLRRCQAP--YPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHA  287 (364)
T ss_pred             EEEEecChhhc-ccccceeeeeeCCH-HHHHHHHhccCC--CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999 66789999999874 565655554432  3344443333333332     234555667778888999


Q ss_pred             HHHhCCCcc
Q 022194          267 FLASHPRVK  275 (301)
Q Consensus       267 ~l~~~~~v~  275 (301)
                      .|++++++.
T Consensus       288 ~L~~~~~~~  296 (364)
T PRK04781        288 ALAQLPGVR  296 (364)
T ss_pred             HHHhCCCCC
Confidence            998876653

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.90  E-value=2.2e-22  Score=180.60  Aligned_cols=218  Identities=16%  Similarity=0.218  Sum_probs=141.2

Q ss_pred             cccCC-CCch-HHHHHHHHHh-hcCCCceEEecch-HHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc----
Q 022194           48 DYTRS-GNPT-RDALESLLAK-LDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV----  119 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~-~~~~~~~i~~~sG-~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~----  119 (301)
                      .|.+. |.+. ++++.+++.+ .... +.+++++| ++++..+..++.+||+|++++|+|..+.    ..++..|+    
T Consensus        70 ~Y~p~~g~~~lr~aia~~~~~~~~~~-d~I~it~Ga~~al~~l~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~  144 (402)
T TIGR03542        70 GYGPEQGYPFLREAIAENDYRGRIDP-EEIFISDGAKCDVFRLQSLFGSDNTVAVQDPVYPAYV----DSNVMAGRAGVL  144 (402)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCH-HHEEECCCcHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcCCcccc
Confidence            46544 5554 5555555422 1223 45666666 5888767777889999999999999986    44456666    


Q ss_pred             -------EEEEecCCCHHHHHhhc--CCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC--
Q 022194          120 -------VVKRVNTCDLDEVASAI--GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--  185 (301)
Q Consensus       120 -------~~~~~~~~d~~~l~~~l--~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~--  185 (301)
                             +++.++.+..+.+...+  ..++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|.......  
T Consensus       145 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~  224 (402)
T TIGR03542       145 DDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSL  224 (402)
T ss_pred             ccccccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCC
Confidence                   77777754222121111  157899999999999999987   7889999999999999999997543221  


Q ss_pred             --c----c-CCCCcEEEecccccccCCCCceeeEEEEcchhH-------HHHHHHhhhhcCCCCCHHhHHHHHccc----
Q 022194          186 --P----L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-------AKELYFLQNAEGSGLAPFDCWICLRGV----  247 (301)
Q Consensus       186 --~----~-~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l----  247 (301)
                        +    . ..+..++++||||.+ |.+|+|.||++++++.+       .+.+.........+.+...+.++...+    
T Consensus       225 ~~~~~~~~~~~~~vi~~~SfSK~~-g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~  303 (402)
T TIGR03542       225 PHSIFEIPGAKECAIEFRSFSKTA-GFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEG  303 (402)
T ss_pred             CcchhhCCCCcccEEEEecCcccc-CCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcc
Confidence              1    0 123568899999999 66789999999976533       121111111122234444443333322    


Q ss_pred             -ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          248 -KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       248 -~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                       +.+.+.++.+.++.+.+.+.|++.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~L~~~  328 (402)
T TIGR03542       304 LQPILEAISYYMENARILRKALEAA  328 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhc
Confidence             223445566677777888888774

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.90  E-value=2.5e-22  Score=180.48  Aligned_cols=215  Identities=18%  Similarity=0.177  Sum_probs=158.1

Q ss_pred             HHHHHHHHHhhcCC-C-ceEEecch-HHHHHHHH-h----ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDKA-D-RALCFTSG-MAALAAVT-H----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~-~-~~i~~~sG-~~ai~~~~-~----~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      .+++++.++++++. + +.+++++| ++++..+. .    .+++||+|+++++.|++....|...++..|++++.++.+ 
T Consensus        69 ~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~  148 (406)
T PRK09295         69 MENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP  148 (406)
T ss_pred             HHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC
Confidence            67888999999986 3 45555555 68886443 2    568999999999999987766767778889999988753 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          |++++++++++++++|++++++||||.+.|+++|.++|+++|+++++|++|+.+... +....++|+++.|+||.+
T Consensus       149 ~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~  228 (406)
T PRK09295        149 DGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLY  228 (406)
T ss_pred             CCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhcc
Confidence                789999999889999999999999999999999999999999999999999888754 333568999999999966


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhh----------------------hhcCCCCCHHhHHHHHcccccH-----HHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQ----------------------NAEGSGLAPFDCWICLRGVKTM-----ALRVE  255 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~l~~~-----~~~~~  255 (301)
                       ||+|  .|+++.+++.+ +.+....                      .....+.+......+..+++.+     +...+
T Consensus       229 -gp~G--~G~l~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~  304 (406)
T PRK09295        229 -GPTG--IGILYVKEALL-QEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAE  304 (406)
T ss_pred             -CCCC--cEEEEEchHhH-hhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHH
Confidence             7877  48888876532 3221100                      0011133333344444444432     33445


Q ss_pred             HHHHHHHHHHHHHHhCCCcc
Q 022194          256 KQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~v~  275 (301)
                      +..+..+++.+.|+++++++
T Consensus       305 ~~~~l~~~l~~~l~~~~~~~  324 (406)
T PRK09295        305 YEQNLMHYALSQLESVPDLT  324 (406)
T ss_pred             HHHHHHHHHHHHHhcCCCEE
Confidence            56666777888887776653

>PRK09105 putative aminotransferase; Provisional

Probab=99.90  E-value=1.7e-22  Score=179.11  Aligned_cols=207  Identities=19%  Similarity=0.240  Sum_probs=149.4

Q ss_pred             chHHHHHHHHHhhcCCC-ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           55 PTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      +...++++.+++.+|.+ +.|++++| ++++. ++..++++||+|++++|.|..+.    ..++..|.+++.++.+    
T Consensus        78 ~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~  153 (370)
T PRK09105         78 ELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGW----RAADAQGAPVAKVPLRADGA  153 (370)
T ss_pred             chHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEecCCCCCC
Confidence            33778888899888765 45666666 58886 55667899999999999999886    5566788998888763    


Q ss_pred             -CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCcccc-C----ccCCCCcEEEeccc
Q 022194          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS-R----PLELGADIVMHSAT  199 (301)
Q Consensus       128 -d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~--~~~~li~D~~~~~~~~~-~----~~~~~~di~~~S~s  199 (301)
                       |++++++. .++++++++++|+||||.+.+.++|.++++.  +++++|+||+|...... .    .......+++.|||
T Consensus       154 ~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfS  232 (370)
T PRK09105        154 HDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFS  232 (370)
T ss_pred             CCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEeccc
Confidence             67788776 4578999999999999999988887777653  48999999998532211 1    11224568999999


Q ss_pred             ccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       200 K~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      |++ |.+|+|.||+++++ .+.+.+...   ..+..+...+.++...+.   .+.+.++.+.++.+++.+.|+++
T Consensus       233 K~~-g~~GlRiG~~v~~~-~~i~~l~~~---~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  302 (370)
T PRK09105        233 KLY-GMAGMRLGLAAARP-DLLAKLARF---GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK  302 (370)
T ss_pred             Hhh-cCCccceeeeecCH-HHHHHHHhc---CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999 67889999999874 455544443   223344444444444333   34555667777888888888874

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.90  E-value=8.7e-22  Score=176.24  Aligned_cols=219  Identities=22%  Similarity=0.251  Sum_probs=150.7

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcC----CCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDK----ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~----~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..|... |.+. ++.+.+++...++    .++.++++++++++. ++..++++||.|++++|.|..+.    ..++..|+
T Consensus        67 ~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~----~~~~~~g~  142 (394)
T PRK06836         67 HGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYR----FYVDNHGG  142 (394)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHH----HHHHHcCC
Confidence            345443 5554 6666666665543    234445555568886 56667899999999999999986    55567889


Q ss_pred             EEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHH------cCCEEEEeCCcCCcccc
Q 022194          120 VVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHA------HGALLLVDNSIMSPVLS  184 (301)
Q Consensus       120 ~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~------~~~~li~D~~~~~~~~~  184 (301)
                      +++.++.+      |++++++++++++++|++++|+||||.+.+   +++|+++|++      ||+++|+||+|....+.
T Consensus       143 ~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~  222 (394)
T PRK06836        143 KLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYD  222 (394)
T ss_pred             EEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccC
Confidence            99888763      689999999889999999999999999986   6778888998      89999999999744322


Q ss_pred             C------ccCCCCcEEEecccccccCCCCceeeEEEEcchhH-----HHHHHHhhhhcC-CCCCHHhHHHHHcccccHHH
Q 022194          185 R------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-----AKELYFLQNAEG-SGLAPFDCWICLRGVKTMAL  252 (301)
Q Consensus       185 ~------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~  252 (301)
                      .      ....+.++++.|+||.+ |.+|+|.|+++++++..     ...+.......+ ...+...+.++...+..- .
T Consensus       223 ~~~~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~  300 (394)
T PRK06836        223 GAEVPYIFKYYDNSIVVYSFSKSL-SLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT-V  300 (394)
T ss_pred             CCCCCChHHccCcEEEEecchhhc-cCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh-H
Confidence            1      11234689999999999 55689999999875431     111111111111 234444444544444332 2


Q ss_pred             HHHHHHHHHHHHHHHHHhC
Q 022194          253 RVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~  271 (301)
                      .++.+.++.+.+.+.|+++
T Consensus       301 ~~~~~~~~r~~l~~~L~~~  319 (394)
T PRK06836        301 DVSIYKRNRDLLYDGLTEL  319 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            3455667777788888775

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.90  E-value=1.1e-22  Score=180.42  Aligned_cols=251  Identities=19%  Similarity=0.167  Sum_probs=162.8

Q ss_pred             cceeeecCCCCCCCCccccCeeecceeecC-CCC-CC----CCccccCC--CC-chHHHHHHHHHhhcCCCceEEecchH
Q 022194           10 STLLMNFSNEFDPYGALSTPLYQTATFKQP-SAT-EN----GPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGM   80 (301)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~-~~~-~~----~~~~y~~~--g~-~~~~~l~~~l~~~~~~~~~i~~~sG~   80 (301)
                      +..+++|+ +|||||...+|.+.......- ... +.    .+..-++.  |. +..+++++.++++++.++++++++|+
T Consensus         3 ~~~~~~~~-s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~   81 (370)
T PRK05937          3 ESLSIDFV-TNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGY   81 (370)
T ss_pred             CCceEEeE-CCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChH
Confidence            45689999 999999999998886543321 110 10    11111221  33 34899999999999999899999999


Q ss_pred             HHHHHHH-hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC------CCceEEEEeCCCCCcc
Q 022194           81 AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQ  153 (301)
Q Consensus        81 ~ai~~~~-~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~------~~~~~v~i~~~~np~G  153 (301)
                      .++..+. .+.+++|.|++....|.+....+.. ..  +.. ..++..|++++++.++      +++.+|++++++|++|
T Consensus        82 ~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~-~~--~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G  157 (370)
T PRK05937         82 MANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV-IS--GWH-QSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKG  157 (370)
T ss_pred             HHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH-cC--Cce-EEecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCC
Confidence            7765444 3456777777766677666654432 22  333 3356678888888886      2456778899999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCCcCCccccCcc-----CCC---CcEEEecccccccCCCCceeeEEEEcchhHHHHHH
Q 022194          154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL-----ELG---ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (301)
Q Consensus       154 ~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~-----~~~---~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~  225 (301)
                      .+.|+++|.++|+++|+++++|++|+.|.++...     ..+   .++++.|+||.+ |+.|  ++ ++..++ ....+.
T Consensus       158 ~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G--~~-vl~~~~-~~~~~~  232 (370)
T PRK05937        158 TLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMG--AA-LLSSSE-VKQDLM  232 (370)
T ss_pred             CccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCc--eE-EEcCHH-HHHHHH
Confidence            9999999999999999999999999987654321     122   247789999999 5544  24 444433 323222


Q ss_pred             Hh--hhhcCCCCCHHhHHHHHcccccH----HHHHHHHHHHHHHHHHHHHh
Q 022194          226 FL--QNAEGSGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       226 ~~--~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ..  ......+.++....++..+++.+    ...++++.++.+++.+.|..
T Consensus       233 ~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~  283 (370)
T PRK05937        233 LNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSS  283 (370)
T ss_pred             HhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence            11  11223345555555544555443    22345556666666666653

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=2.2e-22  Score=178.49  Aligned_cols=207  Identities=20%  Similarity=0.201  Sum_probs=149.6

Q ss_pred             HHHHHHHHHhhcCCC-ceEEecchH-HHHHH-HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----CH
Q 022194           57 RDALESLLAKLDKAD-RALCFTSGM-AALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DL  129 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~~-~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----d~  129 (301)
                      ..++++.++++++.+ +.+++++|+ +++.. +..++++||.|++++|.|+.+.    ..+...|.+++.++.+    |+
T Consensus        69 ~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~vp~~~~~~~~  144 (369)
T PRK08153         69 NHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFN----YHVAGFGGRLVTVPYRDDREDL  144 (369)
T ss_pred             cHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHH----HHHHHcCCeEEEeeCCCCCCCH
Confidence            578888899888865 577777775 78864 4556899999999999999886    3344567788877753    67


Q ss_pred             HHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCccccC---c--cCCCCcEEEeccccc
Q 022194          130 DEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLSR---P--LELGADIVMHSATKF  201 (301)
Q Consensus       130 ~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~--~~~li~D~~~~~~~~~~---~--~~~~~di~~~S~sK~  201 (301)
                      +++++.+. .+++++++++|+||||.+.+.+++.++++..  +++||+||+|.......   .  ......+++.||||.
T Consensus       145 ~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~  224 (369)
T PRK08153        145 DALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKA  224 (369)
T ss_pred             HHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHh
Confidence            77776654 6789999999999999999877776666543  89999999987443221   1  112356999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      + |.+|+|.||+++++ .+.+.+.....  ....++..+.++...++.   +.+.++...++.+.+.+.|++.
T Consensus       225 ~-g~~GlRiG~~v~~~-~~~~~l~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~  293 (369)
T PRK08153        225 Y-GLAGARVGYAIGAP-GTIKAFDKVRN--HFGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARAN  293 (369)
T ss_pred             c-cCcchheeeeecCH-HHHHHHHHhhc--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9 66789999999874 45555544443  244566666665555543   3445566667777777777764

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.90  E-value=2.1e-22  Score=177.76  Aligned_cols=217  Identities=18%  Similarity=0.193  Sum_probs=154.2

Q ss_pred             hHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCC---------------eEEEcCCCCccHHHHHhhhcccCCc
Q 022194           56 TRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGE---------------EIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~---------------~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      .++++++.+++++|.++++++++||+|+. ++.+++++||               +|+++.|.|..+...+...+...|.
T Consensus        46 ~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~  125 (363)
T TIGR01437        46 LVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGG  125 (363)
T ss_pred             HHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCC
Confidence            38999999999999998888888999985 7777888888               8999887666542122355567788


Q ss_pred             EEEEecCC---CHHHHHhhcCCCceEEE-EeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEE
Q 022194          120 VVKRVNTC---DLDEVASAIGPWTKLVW-VESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVM  195 (301)
Q Consensus       120 ~~~~~~~~---d~~~l~~~l~~~~~~v~-i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~  195 (301)
                      ++++++.+   |++++++++.+++++++ +++++|++|.+.|+++|+++||++|+++|+|++|+... ......|+|+++
T Consensus       126 ~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-~~~~~~g~D~~~  204 (363)
T TIGR01437       126 KVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-QKYYRLGADLVI  204 (363)
T ss_pred             eEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-HHHHHcCCCEEE
Confidence            88888753   89999999999898766 67889999999999999999999999999999998322 122345789999


Q ss_pred             ecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCC--CCH---HhHHHHHccc-ccHHHHHHHHHHHHHHHHHHHH
Q 022194          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--LAP---FDCWICLRGV-KTMALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       196 ~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~l-~~~~~~~~~~~~~~~~l~~~l~  269 (301)
                      +|+||++.||   ++|+++.+++ +.+.........+..  ...   ....+++..+ +.-.+..++..+++..+.+.|+
T Consensus       205 ~S~~K~l~gp---~~G~l~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~  280 (363)
T TIGR01437       205 YSGAKAIEGP---TSGLVLGKKK-YIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALN  280 (363)
T ss_pred             EeCCcccCCC---ceEEEEEcHH-HHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHh
Confidence            9999999776   4788887644 444433322211111  111   1111112111 1122334455566778999999


Q ss_pred             hCCCcceE
Q 022194          270 SHPRVKKV  277 (301)
Q Consensus       270 ~~~~v~~v  277 (301)
                      +.+++...
T Consensus       281 ~i~g~~~~  288 (363)
T TIGR01437       281 TLKGVSAS  288 (363)
T ss_pred             cCCCeEEE
Confidence            88877544

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=9.8e-23  Score=179.85  Aligned_cols=211  Identities=15%  Similarity=0.160  Sum_probs=151.9

Q ss_pred             CchHHHHHHHHHhhcCCC-ceEEecchH-HHHH-HHHhccCCC-CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           54 NPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~-~~~~~~~~g-~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .+...+|++.+++++|.+ +.+++++|+ +++. ++..++++| |+|++++|.|..+.    ..++..|++++.++.+  
T Consensus        59 ~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~----~~~~~~g~~v~~v~~~~~  134 (354)
T PRK04635         59 ECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYA----ISAETFNVGVKALPLTAD  134 (354)
T ss_pred             CCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEEecCCC
Confidence            334688899999998876 567677765 8886 555677888 89999999998875    5567788999888864  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc-CCEEEEeCCcCCccccC-----ccCCCCcEEEecc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLSR-----PLELGADIVMHSA  198 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~-~~~li~D~~~~~~~~~~-----~~~~~~di~~~S~  198 (301)
                         |++.++ .+ +++++|++++|+||||.+.+.+++.++++.. ++++|+||+|.......     .......+++.||
T Consensus       135 ~~~~~~~l~-~~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~  212 (354)
T PRK04635        135 YQLPLDYIE-QL-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTL  212 (354)
T ss_pred             CCCCHHHHH-hc-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEech
Confidence               566666 34 5899999999999999999999988888763 69999999986433211     1122456899999


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc-----ccHHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                      ||++ |.+|+|.|++++++ .+.+.+.....  ....+.....++...+     +.+.+.++.+.++++.+.+.|++++.
T Consensus       213 SK~~-~l~GlRlG~~i~~~-~~~~~l~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~  288 (354)
T PRK04635        213 SKAF-ALAGARCGFTLANE-ELIEILMRVIA--PYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGG  288 (354)
T ss_pred             HHHh-hhhHHHHhhhhCCH-HHHHHHHhhcC--CCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999 67789999999875 45555443322  2333433333333333     23445556777778889999988764


Q ss_pred             c
Q 022194          274 V  274 (301)
Q Consensus       274 v  274 (301)
                      +
T Consensus       289 ~  289 (354)
T PRK04635        289 A  289 (354)
T ss_pred             c
Confidence            4

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=4.3e-22  Score=175.86  Aligned_cols=205  Identities=14%  Similarity=0.108  Sum_probs=149.5

Q ss_pred             HHHHHHHHHhhcCCC-ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----C
Q 022194           57 RDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----D  128 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d  128 (301)
                      ..++++.++++++.+ +.+++++| ++++. ++..++++||+|++++|.|..+.    ..++..|++++.++.+     |
T Consensus        62 ~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~d  137 (353)
T PRK05387         62 ADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYP----VYAGLYGIPYEEIPLDDDFSID  137 (353)
T ss_pred             HHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHH----HHHHHcCCEEEEeecCCCCCCC
Confidence            468888888888765 45666666 58886 56667899999999999997775    4456778888888764     5


Q ss_pred             HHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc-CCEEEEeCCcCCccccC----ccCCCCcEEEeccccccc
Q 022194          129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLSR----PLELGADIVMHSATKFIA  203 (301)
Q Consensus       129 ~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~-~~~li~D~~~~~~~~~~----~~~~~~di~~~S~sK~~~  203 (301)
                      +++++    +..++|++++|+||||.+.+.+++.++++.+ ++++|+||+|.......    ......+++++||||.+ 
T Consensus       138 ~~~l~----~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~-  212 (353)
T PRK05387        138 VEDYL----RPNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSR-  212 (353)
T ss_pred             HHHHH----hcCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhh-
Confidence            66665    3467899999999999999999999998876 99999999986322111    11234679999999999 


Q ss_pred             CCCCceeeEEEEcchhHHHHHHHhhhhc-CCCCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          204 GHSDVMAGVLAVKGERLAKELYFLQNAE-GSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      |.+|+|.|+++++ +.+.+.+....... ..+.+...+.++...++   .+.+.++++.++++.+.+.|+++
T Consensus       213 ~~~GlR~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  283 (353)
T PRK05387        213 SLAGLRVGFAIGH-PELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL  283 (353)
T ss_pred             cchhhhceeeecC-HHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            6678999999986 45556555444322 23445555555544443   24556677778888888988875

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.90  E-value=3.9e-22  Score=176.48  Aligned_cols=245  Identities=15%  Similarity=0.155  Sum_probs=164.5

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecchH-HHHHHHHh
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~~~~~   88 (301)
                      ..+++|+...+.++  .+|.+.... .. ...  ....|...   ...++++.++++++.+ +.+++++|+ +++..+..
T Consensus        22 ~~~i~l~~~~n~~~--~~~~~~~a~-~~-~~~--~~~~Y~~~---~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~   92 (360)
T PRK07392         22 DAILDFSASINPLG--PPESVIAAI-QS-ALS--ALRHYPDP---DYRELRLALAQHHQLPPEWILPGNGAAELLTWAGR   92 (360)
T ss_pred             ccEEEeCCcCCCCC--CCHHHHHHH-HH-HHH--HhhcCCCc---CHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHH
Confidence            36788885445555  334443332 11 111  12234432   2457888888887665 556666665 88876555


Q ss_pred             ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----------CHHHHHhhcCCCceEEEEeCCCCCccccccH
Q 022194           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------DLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (301)
Q Consensus        89 ~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l  158 (301)
                      .+.+||.|++++|.|..+.    ..++..|.+++.++.+          +++++++.. .+++++++++||||||.+.+.
T Consensus        93 ~l~~g~~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~  167 (360)
T PRK07392         93 ELAQLRAVYLITPAFGDYR----RALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSR  167 (360)
T ss_pred             HhCCCCeEEEECCCcHHHH----HHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCH
Confidence            5567899999999999986    5666788888888764          244444433 467899999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCccccC--------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh
Q 022194          159 RKIAEMAHAHGALLLVDNSIMSPVLSR--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  230 (301)
Q Consensus       159 ~~l~~l~~~~~~~li~D~~~~~~~~~~--------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~  230 (301)
                      ++|.++++++++ +|+||+|.......        .......+++.||||.| |.+|+|.||++++++ +.+.+....  
T Consensus       168 ~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~~v~~~~-~~~~~~~~~--  242 (360)
T PRK07392        168 EAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFY-SLPGLRLGYAIAHPD-RLQRWQQWR--  242 (360)
T ss_pred             HHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhh-cCCchheeeeeCCHH-HHHHHHhhC--
Confidence            999999999985 66699987543221        11224579999999999 667899999998754 445444332  


Q ss_pred             cCCCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          231 EGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      ..+..+...+.++...++.   ..+..+.+.++++++.+.|++++++
T Consensus       243 ~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  289 (360)
T PRK07392        243 DPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGL  289 (360)
T ss_pred             CCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            2345566666665555543   2333455667777888888877654

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.90  E-value=1e-21  Score=173.50  Aligned_cols=245  Identities=20%  Similarity=0.239  Sum_probs=163.6

Q ss_pred             ccceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCC----ceEEecch-HH
Q 022194            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKAD----RALCFTSG-MA   81 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~----~~i~~~sG-~~   81 (301)
                      ....+++|+.++.+...  +|.+.... ..  ..  ....|... |.+. ++++.+++.+.++.+    +.+++++| ++
T Consensus        19 ~~~~~i~l~~~~p~~~~--~~~~~~~~-~~--~~--~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~   91 (357)
T TIGR03539        19 HPDGIVDLSVGTPVDPV--PPLIRAAL-AA--AA--DAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKE   91 (357)
T ss_pred             CCCCeEEccCCCCCCCC--CHHHHHHH-HH--HH--hhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHH
Confidence            34567999854433321  23332221 11  11  22346554 6655 888888888775532    56666666 58


Q ss_pred             HHHHHHh-c-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccccc--
Q 022194           82 ALAAVTH-L-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD--  157 (301)
Q Consensus        82 ai~~~~~-~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~--  157 (301)
                      ++..+.. + +++||.|++++|+|..+.    ..++..|.+++.++  +.+.+.   ..++++|++++|+||||.+.+  
T Consensus        92 ~i~~~~~~l~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~v~--~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~  162 (357)
T TIGR03539        92 LVAWLPTLLGLGPGDTVVIPELAYPTYE----VGALLAGATPVAAD--DPTELD---PVGPDLIWLNSPGNPTGRVLSVD  162 (357)
T ss_pred             HHHHHHHHHcCCCCCEEEECCCCcHHHH----HHHHhcCCEEeccC--ChhhcC---ccCccEEEEeCCCCCcCccCCHH
Confidence            8865544 5 689999999999998886    33456788887774  444333   357899999999999999985  


Q ss_pred             -HHHHHHHHHHcCCEEEEeCCcCCccccC-------c----cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHH
Q 022194          158 -IRKIAEMAHAHGALLLVDNSIMSPVLSR-------P----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (301)
Q Consensus       158 -l~~l~~l~~~~~~~li~D~~~~~~~~~~-------~----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~  225 (301)
                       +++|+++|+++|+++|+||+|....+..       +    ......+++.||||.+ +.+|+|+|+++++ +.+.+.+.
T Consensus       163 ~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~G~R~G~~i~~-~~~~~~~~  240 (357)
T TIGR03539       163 ELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRS-NLAGYRAGFVAGD-PALVAELL  240 (357)
T ss_pred             HHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEecccccc-CCCceeEEEEecC-HHHHHHHH
Confidence             7779999999999999999986422210       0    1123569999999999 5578999999976 45656555


Q ss_pred             HhhhhcCCCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          226 FLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ......+...+...+.++...++.   +...++.+.++++.+.+.|++.
T Consensus       241 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~  289 (357)
T TIGR03539       241 TVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA  289 (357)
T ss_pred             HHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            555444445555555555555543   3445566677777888888774

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.90  E-value=6.1e-22  Score=178.95  Aligned_cols=215  Identities=24%  Similarity=0.226  Sum_probs=156.7

Q ss_pred             HHHHHHHHHhhcCCC--ceEEe-cchHHHHHHHHh-----ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDKAD--RALCF-TSGMAALAAVTH-----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~-~sG~~ai~~~~~-----~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      .+++++.++++++.+  +.+++ +++|+++..+..     .+++||+|+++++.|++....|...++..|++++.++.+ 
T Consensus        78 ~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~  157 (424)
T PLN02855         78 YELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTP  157 (424)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCC
Confidence            578889999999873  34555 445688865443     468899999999999987777777778889999888753 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          |++++++.+++++++|++++++|+||.+.|+++|+++|+++|+++++|++|+.+... +..+.++|++++|+||++
T Consensus       158 ~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~  237 (424)
T PLN02855        158 DEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMC  237 (424)
T ss_pred             CCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeeccccc
Confidence                789999999889999999999999999999999999999999999999999877654 334567899999999965


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhh---------------------hcCCCCCHHhHHHHHccccc-----HHHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQN---------------------AEGSGLAPFDCWICLRGVKT-----MALRVEK  256 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~-----~~~~~~~  256 (301)
                       ||+|  .|+++.+++. .+.+.....                     ....+.+....+.+..+++.     +++..++
T Consensus       238 -gp~G--~G~l~~~~~~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~  313 (424)
T PLN02855        238 -GPTG--IGFLWGKSDL-LESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEY  313 (424)
T ss_pred             -CCCc--cEEEEEchhh-hhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence             7877  5888887543 333221100                     00111222222223333332     3444556


Q ss_pred             HHHHHHHHHHHHHhCCCcc
Q 022194          257 QQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~v~  275 (301)
                      ..+..+++.+.|+++++++
T Consensus       314 ~~~l~~~l~~~L~~~~g~~  332 (424)
T PLN02855        314 EVELGTYLYEKLSSVPGVR  332 (424)
T ss_pred             HHHHHHHHHHHHhcCCCEE
Confidence            6677778888888777664

>PRK03321 putative aminotransferase; Provisional

Probab=99.90  E-value=1.2e-22  Score=179.29  Aligned_cols=208  Identities=17%  Similarity=0.208  Sum_probs=154.4

Q ss_pred             hHHHHHHHHHhhcCCC-ceEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           56 TRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      ...++++.++++++.+ +.+++++|+ +++. ++..++++||+|+++.|.|..+.    ..++..|.+++.++.+     
T Consensus        58 g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~  133 (352)
T PRK03321         58 GAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYP----ILVQVAGATPVQVPLTPDHTH  133 (352)
T ss_pred             cHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHH----HHHHHcCCEEEEccCCCCCCC
Confidence            4778888888888876 467777886 6665 45567899999999999987765    4456678888888864     


Q ss_pred             CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCccccC--------ccCCCCcEEEec
Q 022194          128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSR--------PLELGADIVMHS  197 (301)
Q Consensus       128 d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~--~~~~li~D~~~~~~~~~~--------~~~~~~di~~~S  197 (301)
                      |++++++.+++++++|++++|+||||.+.+.++|.++|+.  +++++|+||+|.......        .......++++|
T Consensus       134 ~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S  213 (352)
T PRK03321        134 DLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRT  213 (352)
T ss_pred             CHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEec
Confidence            6899999998899999999999999999999999999987  599999999987443321        112245799999


Q ss_pred             ccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       198 ~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +||.| |.+|+|.|+++++ +.+.+.+....  .....+...+.++...+.   .+.+..++..++...+.+.|++.
T Consensus       214 ~SK~~-g~~GlRiG~~v~~-~~~~~~~~~~~--~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~  286 (352)
T PRK03321        214 FSKAY-GLAGLRVGYAVGH-PEVIAALRKVA--VPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAA  286 (352)
T ss_pred             chHHh-hhHHHhhhhhcCC-HHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999 5678999999986 45666555432  334555555554444443   34444555666666788888764

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=2.9e-22  Score=175.56  Aligned_cols=204  Identities=17%  Similarity=0.213  Sum_probs=145.5

Q ss_pred             HHHHHHHHHhhcCCC-ceEEecch-HHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CH
Q 022194           57 RDALESLLAKLDKAD-RALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DL  129 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~  129 (301)
                      ..++++.++++++.+ +.+++++| ++++..+...+ +||+|+++.|.|..+.    ..++..|.+++.++.+     |+
T Consensus        57 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~-~gd~V~v~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~d~  131 (337)
T PRK03967         57 SDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF-EGKHIVITPPTFGMYS----FYAKLNGIPVIDVPLKEDFTIDG  131 (337)
T ss_pred             HHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh-CCCeEEEeCCChHHHH----HHHHHcCCeEEEeecCCCCCcCH
Confidence            567777777777755 56666666 58887665555 7999999999998765    4556788888888764     56


Q ss_pred             HHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC----ccCCCCcEEEecccccccCC
Q 022194          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----PLELGADIVMHSATKFIAGH  205 (301)
Q Consensus       130 ~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~----~~~~~~di~~~S~sK~~~g~  205 (301)
                      +.+++.+ ++++++++++|+||||.+.+.++|.++++ +++++|+||+|.......    .......+++.||||.| |.
T Consensus       132 ~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~-~l  208 (337)
T PRK03967        132 ERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAF-GL  208 (337)
T ss_pred             HHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhh-cc
Confidence            7787765 57789999999999999999999999995 799999999997432111    11224579999999999 66


Q ss_pred             CCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          206 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       206 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +|+|.||+++++ .+.+.+.....  .+..+...+.++...++   .+.+.++...++++.+.+.|.++
T Consensus       209 ~GlRiG~iv~~~-~~i~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  274 (337)
T PRK03967        209 AGIRAGYAIANE-EIIDALYRIKP--PFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY  274 (337)
T ss_pred             hhhhheeeecCH-HHHHHHHhhcC--CCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            789999999874 45565554433  23445555555544443   33444455666666777777653

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.89  E-value=1.2e-21  Score=174.32  Aligned_cols=217  Identities=22%  Similarity=0.209  Sum_probs=158.4

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecchHHHHH-HHHhccC---CCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           57 RDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLG---TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~sG~~ai~-~~~~~~~---~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .+++++.++++++.+   +.++++|+++++. ++.++..   +||+|+++++.|++....+...++..|.+++.++.+  
T Consensus        45 ~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~  124 (373)
T cd06453          45 YEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDD  124 (373)
T ss_pred             HHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCC
Confidence            667889999999876   4555666678875 5556666   899999999999987655556667788999988765  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccccc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (301)
                         |++++++++.+++++|++++++||||.+.|+++|.++|+++|+++++|++++.+... ...+.++|++++|++|+++
T Consensus       125 ~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~  204 (373)
T cd06453         125 GQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLG  204 (373)
T ss_pred             CCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccC
Confidence               789999999889999999999999999999999999999999999999999877654 2335689999999999996


Q ss_pred             CCCCceeeEEEEcchhHHHHHHHhhhh---------------------cCCCCCHHhHHHHHccccc-----HHHHHHHH
Q 022194          204 GHSDVMAGVLAVKGERLAKELYFLQNA---------------------EGSGLAPFDCWICLRGVKT-----MALRVEKQ  257 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~-----~~~~~~~~  257 (301)
                      + +|  .|+++.+++ +.+.+......                     ...+.+.....++..+++.     +++.+++.
T Consensus       205 ~-~g--~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~  280 (373)
T cd06453         205 P-TG--IGVLYGKEE-LLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHE  280 (373)
T ss_pred             C-CC--cEEEEEchH-HhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            5 44  588888754 43433221100                     0011222222222222322     34556667


Q ss_pred             HHHHHHHHHHHHhCCCcceE
Q 022194          258 QDNAQKIAEFLASHPRVKKV  277 (301)
Q Consensus       258 ~~~~~~l~~~l~~~~~v~~v  277 (301)
                      .++++++.+.|++++++..+
T Consensus       281 ~~~~~~l~~~l~~~~~~~~~  300 (373)
T cd06453         281 HELTAYALERLSEIPGVRVY  300 (373)
T ss_pred             HHHHHHHHHHHhcCCCeEEe
Confidence            77788888888887765433

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PLN02397 aspartate transaminase

Probab=99.89  E-value=1.6e-21  Score=175.62  Aligned_cols=220  Identities=15%  Similarity=0.138  Sum_probs=147.6

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC---c-e----EEecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD---R-A----LCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP  115 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~---~-~----i~~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~  115 (301)
                      ..|++. |.+. |+++.+++.+.....   + +    ++.++|+.++ ..++.++.|||+|++++|.|+.+.    ..++
T Consensus        85 ~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~----~~~~  160 (423)
T PLN02397         85 KEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHH----NIFR  160 (423)
T ss_pred             CCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHH----HHHH
Confidence            357766 7766 778888776554321   2 2    2233344333 455666679999999999999997    6667


Q ss_pred             cCCcEEEEecC-------CCHHHHHhhcC---CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcc
Q 022194          116 KTGVVVKRVNT-------CDLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (301)
Q Consensus       116 ~~g~~~~~~~~-------~d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~  182 (301)
                      ..|.+++.++.       .|++.+++.+.   ++++++++++||||||.+.+   +++|+++|++||+++|+||+|....
T Consensus       161 ~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~  240 (423)
T PLN02397        161 DAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFA  240 (423)
T ss_pred             HcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCcc
Confidence            78888888764       16777776664   56788888999999999975   7778999999999999999997654


Q ss_pred             ccC------c---c--CCCCcEEEecccccccCCCCceeeEEE--EcchhHHH----HHHHhhhhcCCCCCHHhHHHHHc
Q 022194          183 LSR------P---L--ELGADIVMHSATKFIAGHSDVMAGVLA--VKGERLAK----ELYFLQNAEGSGLAPFDCWICLR  245 (301)
Q Consensus       183 ~~~------~---~--~~~~di~~~S~sK~~~g~~g~~~g~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  245 (301)
                      +..      .   .  .....++++||||.| +++|+|.||++  ..++.+.+    .+.........+.+...+.++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~-~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  319 (423)
T PLN02397        241 SGDLDADAQSVRMFVEDGHEILVAQSYAKNM-GLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVAT  319 (423)
T ss_pred             CCchhhhhHHHHHHHhcCCcEEEEEECcccC-CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHH
Confidence            421      0   1  112479999999999 67889999985  43443333    22222222222233334444333


Q ss_pred             cccc----------HHHHHHHHHHHHHHHHHHHHhC
Q 022194          246 GVKT----------MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       246 ~l~~----------~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .++.          +.+.++.+.++++.+.+.|+++
T Consensus       320 ~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~  355 (423)
T PLN02397        320 ILGDPELFSEWTKELKGMADRIISMRQKLYDALEAR  355 (423)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3222          3445567888888899998876

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=3.4e-22  Score=176.71  Aligned_cols=242  Identities=19%  Similarity=0.211  Sum_probs=155.5

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecch-HHHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~-~~~   87 (301)
                      ..+++|+...+.++..  |.+.... .. . .. ....|...|   ..++++.+++.++.+ +.+++++| ++++. ++.
T Consensus        30 ~~~i~l~~~~~~~~~~--~~~~~~~-~~-~-~~-~~~~Y~~~~---~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~  100 (357)
T PRK14809         30 DDLVKLSSNENPHGPS--PAAVEAI-RE-A-AE-RVHSYPKAS---HADLTAALADRWDVSPEQVWLANGGDGALDYLAR  100 (357)
T ss_pred             cceeEecCCCCCCCCC--HHHHHHH-HH-H-Hh-hhhcCCCCC---HHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            3688888544556643  3333221 11 1 11 123343323   567778888877755 56666666 58886 556


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRK  160 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~  160 (301)
                      .++++||.|++++|.|..+.    ......|..++.++.+       +.+++++.. +++++|++++|+||||.+.+.++
T Consensus       101 ~~~~~gd~V~v~~P~y~~~~----~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~~  175 (357)
T PRK14809        101 AMLDPGDTVLVPDPGFAYYG----MSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLDE  175 (357)
T ss_pred             HhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHHH
Confidence            67899999999999998664    3344566666666542       355555544 36799999999999999998777


Q ss_pred             HHHHHHHc--CCEEEEeCCcCCccccC-----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCC
Q 022194          161 IAEMAHAH--GALLLVDNSIMSPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  233 (301)
Q Consensus       161 l~~l~~~~--~~~li~D~~~~~~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~  233 (301)
                      +.++++..  +++||+||+|.......     ....+..+++.||||.| |.+|+|.|+++++++ +.+.+.....  ..
T Consensus       176 ~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~~-~~~~~~~~~~--~~  251 (357)
T PRK14809        176 VEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAY-GLAGLRLGYAVVPEE-WADAYARVNT--PF  251 (357)
T ss_pred             HHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHh-cCcchhheeeecCHH-HHHHHHHhCC--CC
Confidence            66666543  78999999997543221     11234679999999999 667899999998754 5555544332  34


Q ss_pred             CCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHh
Q 022194          234 GLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       234 ~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ..+...+.++...+.   .+.+.++.+.++.+.+.+.|..
T Consensus       252 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  291 (357)
T PRK14809        252 AASELACRAGLAALDDDEHVERTVETARWAREYIREELDA  291 (357)
T ss_pred             CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            455555555544443   2444455566666667676653

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=7.1e-22  Score=175.61  Aligned_cols=219  Identities=14%  Similarity=0.199  Sum_probs=146.4

Q ss_pred             cccCCCCch-HHHHHHHHHhhcC----CC-ceEEecchH-HHHH-HHHhccCCCC-eEEEcCCCCccHHHHHhhhcccCC
Q 022194           48 DYTRSGNPT-RDALESLLAKLDK----AD-RALCFTSGM-AALA-AVTHLLGTGE-EIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        48 ~y~~~g~~~-~~~l~~~l~~~~~----~~-~~i~~~sG~-~ai~-~~~~~~~~g~-~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      .|...|.+. ++++.+++.+.++    .+ +.+++++|+ +++. ++..++.+|| +|++++|+|..+.    ..++..|
T Consensus        62 ~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~----~~~~~~g  137 (374)
T PRK02610         62 RYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYG----ILAQTLG  137 (374)
T ss_pred             CCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHH----HHHHHcC
Confidence            354335443 5556655554431    22 456677775 8885 5566677776 8999999999886    6667788


Q ss_pred             cEEEEecCC------CHHHHHhhcC----CCceEEEEeCCCCCccccccHHHHHHHHH-HcCCEEEEeCCcCCccccC--
Q 022194          119 VVVKRVNTC------DLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAH-AHGALLLVDNSIMSPVLSR--  185 (301)
Q Consensus       119 ~~~~~~~~~------d~~~l~~~l~----~~~~~v~i~~~~np~G~~~~l~~l~~l~~-~~~~~li~D~~~~~~~~~~--  185 (301)
                      .+++.++.+      |+++++++++    .++++|++++|+||||.+.+.+++.++++ .+++++|+||+|.......  
T Consensus       138 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~  217 (374)
T PRK02610        138 IPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLV  217 (374)
T ss_pred             CEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchH
Confidence            998888753      6788888876    47999999999999999988666555543 2489999999997532211  


Q ss_pred             --ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc---HHHHHHHHHHH
Q 022194          186 --PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDN  260 (301)
Q Consensus       186 --~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~  260 (301)
                        .......+++.||||.+ |.+|+|.||++++ +.+.+.+.....  .+..+...+.++...++.   +.+..++..++
T Consensus       218 ~~~~~~~~~ivi~SfSK~~-g~~GlRiG~~v~~-~~l~~~l~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~  293 (374)
T PRK02610        218 GELAQHPNWVILRTFSKAF-RLAAHRVGYAIGH-PELIAVLEKVRL--PYNLPSFSQLAAQLALEHRQELLAAIPEILQE  293 (374)
T ss_pred             HHHhcCCCEEEEEecchhc-cCcccceeeeecC-HHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence              11223468899999999 6678999999986 456565544432  233445554444444433   23333444555


Q ss_pred             HHHHHHHHHhCCCc
Q 022194          261 AQKIAEFLASHPRV  274 (301)
Q Consensus       261 ~~~l~~~l~~~~~v  274 (301)
                      +..+.+.|++++++
T Consensus       294 r~~l~~~L~~~~~~  307 (374)
T PRK02610        294 RDRLYQALQELPQL  307 (374)
T ss_pred             HHHHHHHHHhCCCc
Confidence            66677888776554

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.89  E-value=9.2e-22  Score=176.81  Aligned_cols=215  Identities=22%  Similarity=0.227  Sum_probs=156.7

Q ss_pred             HHHHHHHHHhhcCCC--ceEEe-cchHHHHHHH-Hh----ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDKAD--RALCF-TSGMAALAAV-TH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~-~sG~~ai~~~-~~----~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      .+++++.+++++|.+  +.+++ +++++++..+ ..    .+++||+|+++++.|++....+...++..|.+++.++.+ 
T Consensus        64 ~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~  143 (403)
T TIGR01979        64 YEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDD  143 (403)
T ss_pred             HHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCC
Confidence            678889999999976  34544 4456887644 33    357899999999999987766767777889999888754 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          |++++++.+.+++++|++++++|+||...|+++|.++|+++|+++++|++|+.+... +..+.++|+++.|+||++
T Consensus       144 ~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~  223 (403)
T TIGR01979       144 DGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMY  223 (403)
T ss_pred             CCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEeccccc
Confidence                789999999999999999999999999999999999999999999999999887653 334568999999999987


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhh---------------------hcCCCCCHHhHHHHHccccc-----HHHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQN---------------------AEGSGLAPFDCWICLRGVKT-----MALRVEK  256 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~-----~~~~~~~  256 (301)
                       ||+|  .|+++.+++ +.+.+.....                     ....+.+......+..+++.     .+...++
T Consensus       224 -gp~G--~g~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~  299 (403)
T TIGR01979       224 -GPTG--IGVLYGKEE-LLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAH  299 (403)
T ss_pred             -CCCC--ceEEEEchH-HHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence             6777  588888754 3332211100                     00012223333333333333     2344566


Q ss_pred             HHHHHHHHHHHHHhCCCcc
Q 022194          257 QQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~v~  275 (301)
                      ..+.++++.+.|+++++++
T Consensus       300 ~~~l~~~l~~~l~~~~g~~  318 (403)
T TIGR01979       300 EHELTAYALERLGEIPGLR  318 (403)
T ss_pred             HHHHHHHHHHHHhcCCCEE
Confidence            6777777888887776654

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.89  E-value=3.4e-21  Score=170.56  Aligned_cols=210  Identities=19%  Similarity=0.167  Sum_probs=161.4

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+.++++++++++.++.+++++++||++|+. ++..+ ++|||+|++++++|.++.    ..+...|.+++.++.+    
T Consensus        30 g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~----~~~~~~G~~~v~vd~d~~~~  105 (376)
T TIGR02379        30 GPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTA----NAFVLRGAKIVFVDIRPDTM  105 (376)
T ss_pred             cHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHH----HHHHHcCCEEEEEecCCCcC
Confidence            3558999999999999999999999999986 44555 789999999999999886    3345678898888864    


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCC--CcEEEeccc--cc
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KF  201 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~--~di~~~S~s--K~  201 (301)
                        |++++++++++++++|+   |+|++|...++++|.++|+++|+++|+|++++.+........|  .|+.++||+  |.
T Consensus       106 ~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~  182 (376)
T TIGR02379       106 NIDETLIESAITHRTKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKN  182 (376)
T ss_pred             CCCHHHHHHhcCcCceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCCc
Confidence              67889999998999987   5678999999999999999999999999999877532222233  377777775  44


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhhc-------------------C--CCCCHHhHHHHHcccccHHHHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAE-------------------G--SGLAPFDCWICLRGVKTMALRVEKQQDN  260 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~-------------------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~  260 (301)
                      +.  +|..+|+++++++.+.++++......                   +  .-++...++..+..++.+++..++..++
T Consensus       183 l~--~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~  260 (376)
T TIGR02379       183 YT--SGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLAT  260 (376)
T ss_pred             Cc--ccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            53  23357999998888877776554311                   1  1234455666667788888888888888


Q ss_pred             HHHHHHHHHhCC
Q 022194          261 AQKIAEFLASHP  272 (301)
Q Consensus       261 ~~~l~~~l~~~~  272 (301)
                      +++..+.|.+++
T Consensus       261 ~~~y~~~L~~~~  272 (376)
T TIGR02379       261 WQLYQDALKPLE  272 (376)
T ss_pred             HHHHHHHhccCC
Confidence            888888887654

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.89  E-value=4.4e-22  Score=174.76  Aligned_cols=244  Identities=21%  Similarity=0.205  Sum_probs=165.0

Q ss_pred             ecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCC
Q 022194           15 NFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTG   93 (301)
Q Consensus        15 ~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g   93 (301)
                      +|+ +++++|  ++|.+........  .  ....|.  ..+..+++++.+++++|.++.+++++|++++. ++..++++|
T Consensus         1 ~~~-~~~~~~--~~~~v~~a~~~~~--~--~~~~~~--~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~g   71 (338)
T cd06502           1 DFR-SDTVTG--PTPEMLEAMAAAN--V--GDDVYG--EDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQPG   71 (338)
T ss_pred             Ccc-cccCCC--CCHHHHHHHHhcc--c--CCcccC--CCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCCC
Confidence            467 788888  4455554431111  1  111221  23458999999999999668888899998885 666678999


Q ss_pred             CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----CHHHHHhhcCC-------CceEEEEeCCCCCccc--cccHHH
Q 022194           94 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGP-------WTKLVWVESPTNPRQQ--ICDIRK  160 (301)
Q Consensus        94 ~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~-------~~~~v~i~~~~np~G~--~~~l~~  160 (301)
                      |+|+++++.|......+ ......|++++.++.+    |++++++++.+       ++++|++++|+|+.|.  ..++++
T Consensus        72 d~v~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~  150 (338)
T cd06502          72 GSVICHETAHIYTDEAG-APEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKA  150 (338)
T ss_pred             CeEEEecCcceeeecCC-cHHHHcCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHH
Confidence            99999999987653111 1223468888888763    78999998864       6899999999997443  245888


Q ss_pred             HHHHHHHcCCEEEEeCCcCCcc---cc---CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcC--
Q 022194          161 IAEMAHAHGALLLVDNSIMSPV---LS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG--  232 (301)
Q Consensus       161 l~~l~~~~~~~li~D~~~~~~~---~~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~--  232 (301)
                      |+++|+++|+++|+|++|..+.   ..   .....+.|+++.|+||+++.++   +++++.+ +.+.+.+.......+  
T Consensus       151 i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---g~~~~~~-~~~~~~~~~~~~~~~~~  226 (338)
T cd06502         151 ISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPV---GAVVVGN-RDFIARARRRRKQAGGG  226 (338)
T ss_pred             HHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCcc---ceEEECC-HHHHHHHHHHHHHhCCC
Confidence            9999999999999999874321   11   1112467899999999996542   3444444 556665554443322  


Q ss_pred             CCCCHHhHHHHHccccc--HHHHHHHHHHHHHHHHHHHHhCC
Q 022194          233 SGLAPFDCWICLRGVKT--MALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       233 ~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      ...++..++++...++.  +.++.++..++++++.+.|++++
T Consensus       227 ~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~  268 (338)
T cd06502         227 MRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELG  268 (338)
T ss_pred             hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            23344455555555544  45566788888889999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.89  E-value=2.5e-21  Score=170.46  Aligned_cols=213  Identities=22%  Similarity=0.278  Sum_probs=154.9

Q ss_pred             HHHHHHHHHhhcC----CCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           57 RDALESLLAKLDK----ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~----~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ++++++.+...++    .++.+++++|++++. ++..+.++||+|+++++.|+++.    ..++..+..++.++.+    
T Consensus        42 ~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~  117 (350)
T cd00609          42 REAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYE----AAARLAGAEVVPVPLDEEGG  117 (350)
T ss_pred             HHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHCCCEEEEEecccccC
Confidence            5666666666554    335666666678885 55667788999999999999987    4455677888888765    


Q ss_pred             -CH--HHHHhhcCCCceEEEEeCCCCCccccccH---HHHHHHHHHcCCEEEEeCCcCCcccc--------CccCCCCcE
Q 022194          128 -DL--DEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADI  193 (301)
Q Consensus       128 -d~--~~l~~~l~~~~~~v~i~~~~np~G~~~~l---~~l~~l~~~~~~~li~D~~~~~~~~~--------~~~~~~~di  193 (301)
                       +.  +.++....+++++|++++++||+|.+.|+   ++|+++|+++|+++|+|++|+.+...        .....+.|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~  197 (350)
T cd00609         118 FLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVI  197 (350)
T ss_pred             CccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEE
Confidence             11  56666667889999999999999999875   45568999999999999999765432        133456799


Q ss_pred             EEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHH
Q 022194          194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       194 ~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~  269 (301)
                      ++.|++|+++ .+|++.|+++++++.+.+.+.......+...+.....++...++    .+.+..+++.++++++.+.|+
T Consensus       198 ~~~s~~K~~~-~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~  276 (350)
T cd00609         198 VLRSFSKTFG-LPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALK  276 (350)
T ss_pred             EEeecccccC-CcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999995 44667899998875676766665555444555555544444333    345666778888889999998


Q ss_pred             hCCCc
Q 022194          270 SHPRV  274 (301)
Q Consensus       270 ~~~~v  274 (301)
                      +++..
T Consensus       277 ~~~~~  281 (350)
T cd00609         277 ELGPL  281 (350)
T ss_pred             hcCCc
Confidence            86543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK08354 putative aminotransferase; Provisional

Probab=99.89  E-value=1e-21  Score=170.36  Aligned_cols=151  Identities=19%  Similarity=0.259  Sum_probs=120.9

Q ss_pred             hHHHHHHHHHhhcCCCceEEecch-HHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHh
Q 022194           56 TRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS  134 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~~~i~~~sG-~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~  134 (301)
                      ....++++++++++.  .+++++| ++++..+..++.+||+|++++|+|..+.    ..++..|.+++.++ .|++.+++
T Consensus        41 ~~~~l~~~ia~~~~~--~I~vt~G~~~al~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~~~-~d~~~l~~  113 (311)
T PRK08354         41 YYEWLEEEFSKLFGE--PIVITAGITEALYLIGILALRDRKVIIPRHTYGEYE----RVARFFAARIIKGP-NDPEKLEE  113 (311)
T ss_pred             ChHHHHHHHHHHHCC--CEEECCCHHHHHHHHHHhhCCCCeEEEeCCCcHHHH----HHHHHcCCEEeecC-CCHHHHHH
Confidence            356788899999884  3556666 5888755566668999999999999997    56667888887775 46888888


Q ss_pred             hcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-ccCCCCcEEEecccccccCCCCcee
Q 022194          135 AIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIAGHSDVMA  210 (301)
Q Consensus       135 ~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~S~sK~~~g~~g~~~  210 (301)
                      .++ +++++++++|+||||.+.+   +++|+++|+++|+++|+||+|....... .......+++.||||+| +.+|+|.
T Consensus       114 ~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~-~l~GlRi  191 (311)
T PRK08354        114 LVE-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSY-GLPGIRV  191 (311)
T ss_pred             hhc-CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhc-CCcccee
Confidence            876 5678999999999999976   6778888999999999999997654321 12245689999999999 6678999


Q ss_pred             eEEEE
Q 022194          211 GVLAV  215 (301)
Q Consensus       211 g~~~~  215 (301)
                      |++++
T Consensus       192 G~~v~  196 (311)
T PRK08354        192 GYVKG  196 (311)
T ss_pred             eeeee
Confidence            99998

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.89  E-value=4e-21  Score=171.24  Aligned_cols=212  Identities=23%  Similarity=0.271  Sum_probs=164.3

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+..+++++.+++++|.++.+++++|++|+. ++.++ +++||+|+++++.|..+.    ..+...|++++.++.+    
T Consensus        28 g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~  103 (380)
T TIGR03588        28 GPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATA----NCALYCGAKVDFVDIDPDTG  103 (380)
T ss_pred             ChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH----HHHHHcCCEEEEEecCCCcC
Confidence            3568999999999999998999999999986 44556 789999999999998875    4556788999988763    


Q ss_pred             --CHHHHHhhcC----CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCC----cEEEec
Q 022194          128 --DLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA----DIVMHS  197 (301)
Q Consensus       128 --d~~~l~~~l~----~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~----di~~~S  197 (301)
                        |++++++.++    +++++|+++   |++|...++++|+++|+++|+++|+|++|+.+........|.    |+.++|
T Consensus       104 ~~d~~~l~~~i~~~~~~~t~~v~~~---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S  180 (380)
T TIGR03588       104 NIDEDALEKKLAAAKGKLPKAIVPV---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFS  180 (380)
T ss_pred             CcCHHHHHHHhhcccCCCceEEEEe---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEe
Confidence              7899999998    688988854   468999999999999999999999999999875433333344    999999


Q ss_pred             cc--ccccCCCCceeeEEEEcchhHHHHHHHhhhhc-------------------------CCCCCHHhHHHHHcccccH
Q 022194          198 AT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-------------------------GSGLAPFDCWICLRGVKTM  250 (301)
Q Consensus       198 ~s--K~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~l~~~  250 (301)
                      +|  |+++.+   .+|+++.+++.+.++++......                         ...++...++..+..++.+
T Consensus       181 ~~~~K~~~~~---~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l  257 (380)
T TIGR03588       181 FHPVKIITTA---EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL  257 (380)
T ss_pred             cCCCCccccc---CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH
Confidence            87  888544   36888888887777665433211                         0122444445555556777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          251 ALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      .+..++..++++++.+.|.+.+.+.
T Consensus       258 ~~~~~~r~~~~~~~~~~L~~~~~~~  282 (380)
T TIGR03588       258 DRFVAKRREIAARYDRLLKDLPYFT  282 (380)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            8888888999999999998877553

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK04311 selenocysteine synthase; Provisional

Probab=99.89  E-value=7.2e-22  Score=177.60  Aligned_cols=213  Identities=23%  Similarity=0.291  Sum_probs=159.3

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHHHHHHhccCCCCeEEEcCCCCc---cHHHHHhhhcccCCcEEEEecC---CC
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYG---GTDRLLSRVTPKTGVVVKRVNT---CD  128 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~~~~~g~~Vlv~~~~y~---~~~~~~~~~~~~~g~~~~~~~~---~d  128 (301)
                      +..+.+++.+++++|+++++++++|++|+.+++..+.+||+|++++..+.   +..+ +...++..|+++++++.   .+
T Consensus       127 ~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~l~~GdeVIvs~~e~~~~ggs~~-i~~~~~~~G~~l~~v~~~~~t~  205 (464)
T PRK04311        127 SRDRALAALLCALTGAEDALVVNNNAAAVLLALNALAAGKEVIVSRGELVEIGGAFR-IPDVMRQAGARLVEVGTTNRTH  205 (464)
T ss_pred             hHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCEEEEcchhhhhcCcchh-hHHHHHHCCcEEEEECCCCCCC
Confidence            34689999999999999999999999999866677899999999987544   2222 23456778999999886   37


Q ss_pred             HHHHHhhcCCCceEEEEeCCCCC--cc--ccccHHHHHHHHHHcCCEEEEeCCcCCc------------cccCccCCCCc
Q 022194          129 LDEVASAIGPWTKLVWVESPTNP--RQ--QICDIRKIAEMAHAHGALLLVDNSIMSP------------VLSRPLELGAD  192 (301)
Q Consensus       129 ~~~l~~~l~~~~~~v~i~~~~np--~G--~~~~l~~l~~l~~~~~~~li~D~~~~~~------------~~~~~~~~~~d  192 (301)
                      ++++++++++++++|++.+++|+  +|  ...|+++|+++||+||+++++|.+.+..            ....+.+.|+|
T Consensus       206 ~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaD  285 (464)
T PRK04311        206 LRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVD  285 (464)
T ss_pred             HHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCc
Confidence            88999999999999999999997  34  5679999999999999999999954311            11234557999


Q ss_pred             EEEecccccccCCCCceeeEEEEcchhHHHHHHH--h---hhhcCCCCCHHh-----------HHHHHcccccHHHHHHH
Q 022194          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--L---QNAEGSGLAPFD-----------CWICLRGVKTMALRVEK  256 (301)
Q Consensus       193 i~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~  256 (301)
                      ++++|.+|+++||   ++|+++++++ +.++++.  +   ....+.++++..           ++..+..++.+..+.++
T Consensus       286 iv~fSg~K~LgGp---~~G~i~g~~~-li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~  361 (464)
T PRK04311        286 LVTFSGDKLLGGP---QAGIIVGKKE-LIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEE  361 (464)
T ss_pred             EEEecCcccccCC---ceEEEEEcHH-HHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHH
Confidence            9999999999876   4799988754 4454442  1   111122233322           23334444556777789


Q ss_pred             HHHHHHHHHHHHHhCC
Q 022194          257 QQDNAQKIAEFLASHP  272 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~  272 (301)
                      +.++++.+.++|+.++
T Consensus       362 ~~~~A~~la~~L~~~~  377 (464)
T PRK04311        362 LRARAERLAAALKAAL  377 (464)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999999875

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.89  E-value=4.6e-21  Score=169.21  Aligned_cols=212  Identities=22%  Similarity=0.253  Sum_probs=162.2

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+...++++.+++++|.++++++++|++|+. ++..+ +++||+|+++.+.|+++..    .+...|.+++.++.+    
T Consensus        17 ~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~   92 (352)
T cd00616          17 GPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATAN----AILLLGATPVFVDIDPDTY   92 (352)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHH----HHHHcCCeEEEEecCCCcC
Confidence            4668999999999999998999999999986 45555 5799999999999998864    344578888887653    


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCcc--CCCCcEEEeccc--cc
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL--ELGADIVMHSAT--KF  201 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~--~~~~di~~~S~s--K~  201 (301)
                        |++++++++++++++|++++   ++|...|+++|.++|+++|+++|+|++|+.+......  ....|+.+.|++  |+
T Consensus        93 ~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~  169 (352)
T cd00616          93 NIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKN  169 (352)
T ss_pred             CcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCC
Confidence              68999999988899998764   6899999999999999999999999999877654322  222588999977  99


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhhc---------------CCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAE---------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  266 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~  266 (301)
                      ++++   .+|+++.+++.+.+.+.......               ...+++..++..+..++.+.+..++..++.+++.+
T Consensus       170 ~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~  246 (352)
T cd00616         170 LTTG---EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERYKE  246 (352)
T ss_pred             Cccc---CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9543   36888887766666554433211               12344555555555566677777888899999999


Q ss_pred             HHHhCCCcc
Q 022194          267 FLASHPRVK  275 (301)
Q Consensus       267 ~l~~~~~v~  275 (301)
                      .|++++++.
T Consensus       247 ~L~~~~g~~  255 (352)
T cd00616         247 LLADLPGIR  255 (352)
T ss_pred             HhcCCCCcc
Confidence            999877664

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.89  E-value=5.9e-22  Score=170.33  Aligned_cols=206  Identities=20%  Similarity=0.166  Sum_probs=144.6

Q ss_pred             HHHHHHHHHhhcCCCceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC--------
Q 022194           57 RDALESLLAKLDKADRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~--------  126 (301)
                      .+++++.+++++|.++.+++++| ++++. ++.+++++||+|++++++|.++...+    ...|..+++++.        
T Consensus        61 i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~----~~~g~~~~~v~~~~~~~~~~  136 (294)
T cd00615          61 IKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGL----VLSGAVPVYLKPERNPYYGI  136 (294)
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHH----HHCCCEEEEecCccCcccCc
Confidence            88999999999999988876666 57774 77788999999999999998886443    456777777753        


Q ss_pred             ---CCHHHHHhhcC--CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcc-----cc-CccCCCCcEEE
Q 022194          127 ---CDLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LS-RPLELGADIVM  195 (301)
Q Consensus       127 ---~d~~~l~~~l~--~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~-----~~-~~~~~~~di~~  195 (301)
                         .|+++++++++  +++++|++++| |++|.+.|+++|+++|+++|+++|+|++|+...     .. .....++|+++
T Consensus       137 ~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~  215 (294)
T cd00615         137 AGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVV  215 (294)
T ss_pred             CCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEE
Confidence               26899999986  46899999988 689999999999999999999999999997532     11 22345899999


Q ss_pred             ecccccccCCCCceeeEEEEcch-hHHHHHHHhhhhcCC-CCCHHhHHHHHcccccH----HHHHHHHHHHHHHHHHHHH
Q 022194          196 HSATKFIAGHSDVMAGVLAVKGE-RLAKELYFLQNAEGS-GLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       196 ~S~sK~~~g~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~l~  269 (301)
                      .|+||+++|+.  .+|++..+++ ....++......... +.+......+..+.+.+    .++.++..++++.+++.|.
T Consensus       216 ~S~hK~l~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         216 QSTHKTLPALT--QGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELALYARQEIN  293 (294)
T ss_pred             EchhcccchHh--HHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            99999986653  2466655543 222333322222222 22222222333333222    3455667777777777664

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.89  E-value=2.1e-21  Score=173.86  Aligned_cols=211  Identities=16%  Similarity=0.094  Sum_probs=157.2

Q ss_pred             hHHHHHHHHHhhcCCC--c-eEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           56 TRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~-~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .++++++.++++++.+  + ++++++|++++. ++..++++||+|+++++.|++..  |...++..|.+++.++.+    
T Consensus        43 ~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~~~  120 (401)
T PLN02409         43 LTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWGQG  120 (401)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCCCC
Confidence            3888999999999875  2 455666678875 56678899999999998887653  446677888888888754    


Q ss_pred             -CHHHHHhhcCC----CceEEEEeCCCCCccccccHHHHHHH--HHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccc
Q 022194          128 -DLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKIAEM--AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSAT  199 (301)
Q Consensus       128 -d~~~l~~~l~~----~~~~v~i~~~~np~G~~~~l~~l~~l--~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~s  199 (301)
                       |++++++++++    ++++|++++++|+||.+.|+++|.++  |+++|+++|+|++++.+... +....++|+++.|.|
T Consensus       121 ~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~  200 (401)
T PLN02409        121 ADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQ  200 (401)
T ss_pred             CCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCc
Confidence             68999999875    78999999999999999999999999  99999999999999987765 345568999999999


Q ss_pred             ccccCCCCceeeEEEEcchhHHHHHHHhhh--------------hc----CCCCCHHhHHHHHccccc-----HHHHHHH
Q 022194          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQN--------------AE----GSGLAPFDCWICLRGVKT-----MALRVEK  256 (301)
Q Consensus       200 K~~~g~~g~~~g~~~~~~~~~~~~~~~~~~--------------~~----~~~~~~~~~~~~~~~l~~-----~~~~~~~  256 (301)
                      |++++|+|  .|+++.+++. .+++.....              ..    ..+.+....+++..+++.     +++..++
T Consensus       201 K~l~~P~G--~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~  277 (401)
T PLN02409        201 KALSLPTG--LGIVCASPKA-LEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIAR  277 (401)
T ss_pred             cccCcCCC--cceeEECHHH-HHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99988887  5999887654 343321100              01    112333334444444443     3445566


Q ss_pred             HHHHHHHHHHHHHhC
Q 022194          257 QQDNAQKIAEFLASH  271 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~  271 (301)
                      ..+.++++.+.|++.
T Consensus       278 ~~~l~~~l~~~L~~~  292 (401)
T PLN02409        278 HARLGEATRLAVEAW  292 (401)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            777777788877654

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.89  E-value=4e-21  Score=170.79  Aligned_cols=209  Identities=21%  Similarity=0.271  Sum_probs=158.9

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+...++++.+++++|.+.+++++||++|+. ++.++ +++||+|+++++.|.++.    ..+...|++++.++.+    
T Consensus        32 g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~----~~~~~~G~~~v~vd~~~~~~  107 (379)
T PRK11658         32 GPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTL----NMIVLLGATPVMVDVDRDTL  107 (379)
T ss_pred             CHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHH----HHHHHcCCEEEEEecCCCcC
Confidence            4679999999999999999999999999986 55566 789999999999999886    4445678999888753    


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC---ccCCCCcEEEecccccc
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSATKFI  202 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~---~~~~~~di~~~S~sK~~  202 (301)
                        |++++++++.+++++|+   |.|++|...++++|+++|+++|+++|+|++++.+....   ....|.+++.++.+|.+
T Consensus       108 ~~d~~~l~~~i~~~tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l  184 (379)
T PRK11658        108 MVTPEAIEAAITPRTKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNI  184 (379)
T ss_pred             CcCHHHHHHhcccCCeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcC
Confidence              78999999998899887   55679999999999999999999999999998765432   22345555555555777


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhhhc----------------------C--CCCCHHhHHHHHcccccHHHHHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQNAE----------------------G--SGLAPFDCWICLRGVKTMALRVEKQQ  258 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~~~----------------------~--~~~~~~~~~~~~~~l~~~~~~~~~~~  258 (301)
                      .++   .+|+++.+++.+.++++......                      |  ..++...++..+..++.+++..++..
T Consensus       185 ~~g---~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~  261 (379)
T PRK11658        185 TCA---EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRR  261 (379)
T ss_pred             ccc---CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            553   47888888777776665433210                      1  11333445555556667777778888


Q ss_pred             HHHHHHHHHHHhCC
Q 022194          259 DNAQKIAEFLASHP  272 (301)
Q Consensus       259 ~~~~~l~~~l~~~~  272 (301)
                      ++++++.+.|++.+
T Consensus       262 ~~a~~~~~~L~~~~  275 (379)
T PRK11658        262 EIAARYLQALADLP  275 (379)
T ss_pred             HHHHHHHHHhcCCC
Confidence            88888888888765

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.88  E-value=2.4e-21  Score=166.22  Aligned_cols=212  Identities=18%  Similarity=0.154  Sum_probs=159.1

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhc---c---CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHL---L---GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~---~---~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      ..++.++++++++|++  +++++++||++.+ ++...   .   +.|.+|+++.-.|+.+....+.. +..|.++.++++
T Consensus        45 ~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~Vtyl~V  123 (386)
T COG1104          45 AVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVTYLPV  123 (386)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHH-HhcCCeEEEeCC
Confidence            3778889999999986  4555555588875 55542   1   25789999999999998887655 788999999998


Q ss_pred             C-----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-ccCCCCcEEEecccc
Q 022194          127 C-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATK  200 (301)
Q Consensus       127 ~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~S~sK  200 (301)
                      +     |+++|++++++++.+|.+.+.||.+|.++|+++|.++||++++++++|.+++.|..+- ....++|+...|.||
T Consensus       124 ~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK  203 (386)
T COG1104         124 DSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHK  203 (386)
T ss_pred             CCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhh
Confidence            7     8999999999999999999999999999999999999999999999999999998874 445589999999999


Q ss_pred             cccCCCCceeeEEEEcchhHHHH-HHHhhh---hcCCCCCHHhHHHHHccc----ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          201 FIAGHSDVMAGVLAVKGERLAKE-LYFLQN---AEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       201 ~~~g~~g~~~g~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +. ||.|+  |+++.++...... +....+   ....+.+......+-+++    +.+....+++...+.+|.+.|++.
T Consensus       204 ~~-GpkGi--GaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~  279 (386)
T COG1104         204 FG-GPKGI--GALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEI  279 (386)
T ss_pred             cc-CCCce--EEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            87 89985  7777765332221 111111   112333444444433333    345555666777777788877753

>PLN02651 cysteine desulfurase

Probab=99.88  E-value=2.9e-21  Score=171.18  Aligned_cols=214  Identities=18%  Similarity=0.134  Sum_probs=153.4

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHh----ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~----~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .+++++.++++++.+  +.+++++|++++. ++..    +.++||+|++++..|+++...+... +..|++++.++.+  
T Consensus        45 ~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~-~~~g~~v~~v~~~~~  123 (364)
T PLN02651         45 VEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHL-QQEGFEVTYLPVKSD  123 (364)
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHH-HhcCCEEEEEccCCC
Confidence            778889999999876  4455555678764 3222    3578999999999998877666443 4678888888753  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccccc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (301)
                         |++++++++++++++|++++++|+||.+.|+++|.++||++|+++++|++++.+..+ +....++|+++.|.||+ +
T Consensus       124 ~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~-~  202 (364)
T PLN02651        124 GLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKI-Y  202 (364)
T ss_pred             CcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhh-C
Confidence               789999999999999999999999999999999999999999999999999988754 55667899999999997 5


Q ss_pred             CCCCceeeEEEEcchhHHHHHHHhh-------hhcCCCCCHHhHHHHHcccccH----HHHHHHHHHHHHHHHHHHHh-C
Q 022194          204 GHSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLAS-H  271 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~l~~-~  271 (301)
                      ||.|  .|+++.+++.+.+ +....       .....+.+......+..+++.+    +...++..+..+++.+.|++ .
T Consensus       203 gp~G--~g~l~v~~~~~~~-l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~  279 (364)
T PLN02651        203 GPKG--VGALYVRRRPRVR-LEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKL  279 (364)
T ss_pred             CCCc--eEEEEEcCCCCCC-CCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhC
Confidence            8877  4888887653321 11110       0112233434444444444443    23334555556667777664 4


Q ss_pred             CCcc
Q 022194          272 PRVK  275 (301)
Q Consensus       272 ~~v~  275 (301)
                      +++.
T Consensus       280 ~~~~  283 (364)
T PLN02651        280 GGVR  283 (364)
T ss_pred             CCEE
Confidence            5553

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=1.1e-21  Score=171.76  Aligned_cols=240  Identities=10%  Similarity=0.087  Sum_probs=153.5

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCcc-ccCCCCchHHHHHHHHHhhcC---C-CceEEecchH-HHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYD-YTRSGNPTRDALESLLAKLDK---A-DRALCFTSGM-AALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~-y~~~g~~~~~~l~~~l~~~~~---~-~~~i~~~sG~-~ai~   84 (301)
                      ...++|+...++++..  |.+......  ... ...+. |...+   ..++++.+++.++   . ++.+++++|+ +++.
T Consensus        19 ~~~i~l~~~~~~~~~p--~~~~~~~~~--~~~-~~~~~~Y~~~~---~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~   90 (335)
T PRK14808         19 RDRTYLALNENPFPFP--EDLVDEVFR--RLN-SDTLRIYYDSP---DEELIEKILSYLDTDFLSKNNVSVGNGADEIIY   90 (335)
T ss_pred             CceeEecCCCCCCCCC--HHHHHHHHH--Hhh-hhhhhcCCCCC---hHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHH
Confidence            5778887555555533  333322111  111 11122 33333   4455555665554   3 3566677775 8887


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHH-HhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEV-ASAIGPWTKLVWVESPTNPRQQICDIRKIAE  163 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l-~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~  163 (301)
                      .++..+   |.|++++|+|..+.    ..++..|.+++.++.++--.+ +..+ ..++++++++|+||||.+.+.+++.+
T Consensus        91 ~~~~~~---d~v~v~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~-~~~~~i~i~nP~NPTG~~~s~~~l~~  162 (335)
T PRK14808         91 VMMLMF---DRSVFFPPTYSCYR----IFAKAVGAKFLEVPLTKDLRIPEVNV-GEGDVVFIPNPNNPTGHVFEREEIER  162 (335)
T ss_pred             HHHHHh---CcEEECCCCHHHHH----HHHHHcCCeEEEecCCCcCCCChhHc-cCCCEEEEeCCCCCCCCCcCHHHHHH
Confidence            655555   67999999999986    667788999999987521000 1112 35689999999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCccccC----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHh
Q 022194          164 MAHAHGALLLVDNSIMSPVLSR----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  239 (301)
Q Consensus       164 l~~~~~~~li~D~~~~~~~~~~----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (301)
                      ++ ++++++|+||+|.......    .......+++.||||++ +.+|+|.||+++++ .+.+.+.....  ....+...
T Consensus       163 l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~-~l~GlRvG~~v~~~-~~~~~l~~~~~--~~~~~~~~  237 (335)
T PRK14808        163 IL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAF-SLAAQRIGYVVSSE-KFIDAYNRVRL--PFNVSYVS  237 (335)
T ss_pred             HH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhc-cCcccceEEEEeCH-HHHHHHHHhcC--CCCCCHHH
Confidence            88 5899999999987432111    11234679999999999 66789999999875 45565544442  23344444


Q ss_pred             HHHHHcccc---cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          240 CWICLRGVK---TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       240 ~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.++...++   .+.+..+.+.++.+.+.+.|++.
T Consensus       238 q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  272 (335)
T PRK14808        238 QMFAKVALDHREIFEERTKFIVEERERMKSALREM  272 (335)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            444444433   33455566677777788888765

>PRK02948 cysteine desulfurase; Provisional

Probab=99.88  E-value=3.3e-21  Score=171.91  Aligned_cols=212  Identities=17%  Similarity=0.164  Sum_probs=155.0

Q ss_pred             HHHHHHHHHhhcCCC-ceEEecch-HHHHH-HHHhcc----CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           57 RDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~-~~~~~~----~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .+++++.+++++|.+ +.+++++| ++++. ++..++    ++|++|++++..|+++...+ ..++..|++++.++.+  
T Consensus        45 ~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~-~~~~~~g~~v~~v~~~~~  123 (381)
T PRK02948         45 LQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYF-QSLESQGYTVTEIPVDKS  123 (381)
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHH-HHHHhCCCEEEEEeeCCC
Confidence            778889999999864 55666555 68875 444443    57899999998888887665 3456778888888754  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccccc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (301)
                         |++++++.+++++++|++++++||||.+.|+++|.++|+++|+++++|+++..+... +..+.++|+++.|+||++ 
T Consensus       124 ~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~-  202 (381)
T PRK02948        124 GLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIY-  202 (381)
T ss_pred             CCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcC-
Confidence               789999999888999999999999999999999999999999999999998877543 344568999999999987 


Q ss_pred             CCCCceeeEEEEcchhHHHHHHH----hhhhcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHhCC
Q 022194          204 GHSDVMAGVLAVKGERLAKELYF----LQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      ||+|  .|+++.+++........    ......++.+.....++..+++    .+.+.++++.++++++.+.|+++.
T Consensus       203 gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  277 (381)
T PRK02948        203 GPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLP  277 (381)
T ss_pred             CCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6877  47777775531111110    0011223444444444444443    345566777888888888888763

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.88  E-value=3.5e-21  Score=172.85  Aligned_cols=252  Identities=20%  Similarity=0.150  Sum_probs=166.2

Q ss_pred             CccceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC--CCchHHHHHH----HHHhhcCCCceEE-ecchH
Q 022194            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALES----LLAKLDKADRALC-FTSGM   80 (301)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~----~l~~~~~~~~~i~-~~sG~   80 (301)
                      ..+...+++-.++||+    +|.+..............++.+++.  |++..+++++    .+++++|.+.+++ ++||+
T Consensus        25 ~~~~~~~~l~~sen~~----~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~  100 (416)
T PRK13034         25 ERQQDHLELIASENFT----SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGS  100 (416)
T ss_pred             HHHhcCeeecccccCC----CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcH
Confidence            3445677776689997    4555544322111122234456666  7777999998    9999999998866 58999


Q ss_pred             HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhccc--CCcEE--EEecC------CCHHHHHhhcC-CCceEEEEeCC
Q 022194           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK--TGVVV--KRVNT------CDLDEVASAIG-PWTKLVWVESP  148 (301)
Q Consensus        81 ~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~--~g~~~--~~~~~------~d~~~l~~~l~-~~~~~v~i~~~  148 (301)
                      .|+. ++.++++|||+|++.+..|.+...   ..+..  .+..+  ..++.      .|++++++.++ .++++|+++.+
T Consensus       101 ~A~~~~l~al~~~GD~Vl~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~  177 (416)
T PRK13034        101 QANGAVYLALLKPGDTILGMSLSHGGHLT---HGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFS  177 (416)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCccceeeee---cCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCC
Confidence            8874 777889999999999998877321   11110  11111  22222      47888888875 36788887655


Q ss_pred             CCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccC----CCCcEEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          149 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       149 ~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~----~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                      .  .|...|+++|.++|+++|+++++|++|+.|.......    .++|++++|+||+++||.   +|+++++++.+...+
T Consensus       178 ~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~~  252 (416)
T PRK13034        178 A--YPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPR---GGMILTNDEEIAKKI  252 (416)
T ss_pred             c--cccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCC---CeEEEECcHHHHHHH
Confidence            4  4678899999999999999999999998776542211    258999999999997764   588888776665544


Q ss_pred             HHhhhhc--CCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          225 YFLQNAE--GSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       225 ~~~~~~~--~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +......  +...++..++.....++    ...++++++.++++++++.|++.
T Consensus       253 ~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~  305 (416)
T PRK13034        253 NSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER  305 (416)
T ss_pred             HhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc
Confidence            3321111  11222222222222222    12445789999999999999865

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.88  E-value=4.9e-21  Score=171.85  Aligned_cols=215  Identities=19%  Similarity=0.153  Sum_probs=153.8

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEecchHHHHHH-HHhc----cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           56 TRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~~-~~~~----~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      ..+++++.+++++|.+  +++++++|++++.. +..+    .++||+|+++.+.|+++...+. .++..|++++.++.+ 
T Consensus        48 ~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~-~~~~~g~~v~~v~~~~  126 (402)
T TIGR02006        48 AVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCR-YLEREGFEVTYLPPKS  126 (402)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHH-HHHhcCCEEEEEccCC
Confidence            3678889999999975  45555555788753 3332    3689999999999998876653 335568899888764 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          |++.+++++++++++|++++++|+||.+.|+++|.++|+++|+++++|++++.+... +....++|+++.|++|++
T Consensus       127 ~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~  206 (402)
T TIGR02006       127 NGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIY  206 (402)
T ss_pred             CCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhc
Confidence                789999999888999999999999999999999999999999999999999988765 444568999999999977


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhh-------hhcCCCCCHHhHHHHHccccc----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                       ||+|  .|+++.+++.... +....       .....+.+......+..+++.    +....++..+..+++.+.|+++
T Consensus       207 -gp~G--~G~l~~~~~~~~~-~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~  282 (402)
T TIGR02006       207 -GPKG--IGALYVRRKPRVR-LEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSI  282 (402)
T ss_pred             -CCCc--eEEEEEccCCCCC-CCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence             6777  4777776543221 11110       011123333333333333333    3344456666777788888777


Q ss_pred             CCcc
Q 022194          272 PRVK  275 (301)
Q Consensus       272 ~~v~  275 (301)
                      +++.
T Consensus       283 ~~v~  286 (402)
T TIGR02006       283 EEVY  286 (402)
T ss_pred             CCEE
Confidence            7653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.87  E-value=8.3e-21  Score=167.87  Aligned_cols=211  Identities=18%  Similarity=0.161  Sum_probs=153.1

Q ss_pred             hHHHHHHHHHhhcCCC--c-eEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           56 TRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~-~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ..+++++.+++++|.+  + .+++++|++++. ++.+++++||+|++.++.|++..  +...++..|.+++.++.+    
T Consensus        33 ~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~  110 (356)
T cd06451          33 LMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGEA  110 (356)
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHH--HHHHHHHhCCCeEEeecCCCCC
Confidence            3789999999999974  3 445666688885 66678899999999988776531  224556678888887643    


Q ss_pred             -CHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccC
Q 022194          128 -DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       128 -d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (301)
                       |.+++++.+++ ++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+... .....+.|+++.|+||++++
T Consensus       111 ~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~  190 (356)
T cd06451         111 VSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGA  190 (356)
T ss_pred             CCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhccC
Confidence             78999999986 8999999999999999999999999999999999999998866532 33455789999999999988


Q ss_pred             CCCceeeEEEEcchhHHHHHHH----hhh---------------hcCCCCCHHhHHHHHccccc-----HHHHHHHHHHH
Q 022194          205 HSDVMAGVLAVKGERLAKELYF----LQN---------------AEGSGLAPFDCWICLRGVKT-----MALRVEKQQDN  260 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~----~~~---------------~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~  260 (301)
                      |.|  .|+++.+++ +.+.+..    ...               ....+.+....+++..+++.     +++..++..++
T Consensus       191 p~g--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~  267 (356)
T cd06451         191 PPG--LGPIAFSER-ALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRL  267 (356)
T ss_pred             CCC--cceeEECHH-HHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            766  588888765 4444332    000               11122333333333333333     34455666777


Q ss_pred             HHHHHHHHHhC
Q 022194          261 AQKIAEFLASH  271 (301)
Q Consensus       261 ~~~l~~~l~~~  271 (301)
                      ++++.+.|++.
T Consensus       268 ~~~l~~~L~~~  278 (356)
T cd06451         268 AKALREGLEAL  278 (356)
T ss_pred             HHHHHHHHHHc
Confidence            88888888764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PLN02672 methionine S-methyltransferase

Probab=99.87  E-value=8.8e-21  Score=182.57  Aligned_cols=214  Identities=14%  Similarity=0.126  Sum_probs=157.0

Q ss_pred             CCch-HHHHHHHHHhhcCCC----ceEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEec
Q 022194           53 GNPT-RDALESLLAKLDKAD----RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (301)
Q Consensus        53 g~~~-~~~l~~~l~~~~~~~----~~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~  125 (301)
                      |.+. ++++.+++++.+|.+    +.+++++|+ +++. ++..+++|||.|+++.|+|+.+.    ..++..|.+++.++
T Consensus       731 g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~----~~a~~~Ga~vv~Vp  806 (1082)
T PLN02672        731 SETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYV----SAAKFLKANFRRIP  806 (1082)
T ss_pred             CChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCEEEEEe
Confidence            4444 899999999988764    368888886 6675 66778999999999999999997    55667888998888


Q ss_pred             CC-------CHHHHHhhcCC-CceEEEEeCCC-CCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-c-----c
Q 022194          126 TC-------DLDEVASAIGP-WTKLVWVESPT-NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-P-----L  187 (301)
Q Consensus       126 ~~-------d~~~l~~~l~~-~~~~v~i~~~~-np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-~-----~  187 (301)
                      .+       |++.+++++++ +.+.|++++|+ ||||.+.+   +++|+++|++||++||+||+|+...+.. .     .
T Consensus       807 l~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl  886 (1082)
T PLN02672        807 TKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDL  886 (1082)
T ss_pred             cccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccch
Confidence            64       57889998875 45689999997 99999975   7889999999999999999997433211 0     0


Q ss_pred             -----C------CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCC-CCCHHhHHHHHcc--------c
Q 022194          188 -----E------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-GLAPFDCWICLRG--------V  247 (301)
Q Consensus       188 -----~------~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------l  247 (301)
                           .      ....++++||||.+ +.+|+|.||++++++.+.+.+......... ..+...+.+++..        .
T Consensus       887 ~s~l~~~~~~sks~nVIvL~SfSKkf-~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~  965 (1082)
T PLN02672        887 KSILSRLKSSNPSFAVALLGGLSTEL-LSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLL  965 (1082)
T ss_pred             hhHHHHhccccCCceEEEEeCcHHhh-ccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHH
Confidence                 0      12568999999999 668999999999877676766554332222 2222333332221        1


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          248 KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.+.+.++.+.++++++.+.|+++
T Consensus       966 ~~l~e~r~~Lk~rRd~L~e~L~~~  989 (1082)
T PLN02672        966 DGVAEQKKILKSRAERLKETLEAC  989 (1082)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
Confidence            224556667888888999999875

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.87  E-value=1.6e-20  Score=169.41  Aligned_cols=220  Identities=19%  Similarity=0.208  Sum_probs=144.9

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecchH-HHHH-HHHhccC-----CCCeEEE-cCCCCccHHHHHh--
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLG-----TGEEIVA-GDDLYGGTDRLLS--  111 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG~-~ai~-~~~~~~~-----~g~~Vlv-~~~~y~~~~~~~~--  111 (301)
                      ..|.+. |.+. ++++.+++.+.+|..   +.|++++|+ +++. ++..+++     +||.|++ .+|+|+.+.....  
T Consensus        68 ~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~  147 (416)
T PRK09440         68 GNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEE  147 (416)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhcc
Confidence            356655 6655 888888888776542   567777775 8886 4455564     5899999 7999999864221  


Q ss_pred             hhcccCCcEEEEecC------CCHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcc
Q 022194          112 RVTPKTGVVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (301)
Q Consensus       112 ~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~  182 (301)
                      ......+..+..++.      .|++.++  +.++++++++++|+||||.+.+   +++|+++|+++|+++|+||+|+...
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~  225 (416)
T PRK09440        148 DLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPF  225 (416)
T ss_pred             CceeecccccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccC
Confidence            112222333333322      2567776  3567899999999999999986   7789999999999999999997422


Q ss_pred             cc----C--ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc--H----
Q 022194          183 LS----R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT--M----  250 (301)
Q Consensus       183 ~~----~--~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~----  250 (301)
                      ..    .  +...+..++++||||+  +.+|+|.||+++++ .+.+.+.........+.+...+.++...++.  +    
T Consensus       226 ~~~~~~~~~~~~~~~vI~~~SfSK~--~~pGlRiG~~i~~~-~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~  302 (416)
T PRK09440        226 PGIIFSEATPLWNPNIILCMSLSKL--GLPGVRCGIVIADE-EIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLS  302 (416)
T ss_pred             CCcchhhcCccccCCeEEEeccccc--CCCcceEEEEeCCH-HHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHH
Confidence            11    1  1113567999999994  56789999999864 5666666555544444555555555444432  1    


Q ss_pred             HH-HHHHHHHHHHHHHHHHHhC
Q 022194          251 AL-RVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       251 ~~-~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+ .++.+.++.+.+.+.|+++
T Consensus       303 ~~~~~~~~~~r~~~~~~~L~~~  324 (416)
T PRK09440        303 ETVIRPFYRQKVQLAIALLRRY  324 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            12 2344555666677777653

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.87  E-value=1.2e-20  Score=169.16  Aligned_cols=159  Identities=28%  Similarity=0.319  Sum_probs=129.1

Q ss_pred             HHHHHHHHHhhcCCC-ceEEecch-HHHHHH-HHh---ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---
Q 022194           57 RDALESLLAKLDKAD-RALCFTSG-MAALAA-VTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~~-~~~---~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---  127 (301)
                      .+++++.+++++|.+ +.+++++| ++++.. +..   .+++||+|++.++.|.+....+...++..|++++.++.+   
T Consensus        62 ~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~  141 (397)
T TIGR01976        62 VDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEAT  141 (397)
T ss_pred             HHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccC
Confidence            789999999999875 33555444 677653 323   368999999999999888766666677889998888753   


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccccc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (301)
                         |++++++++++++++|++++|+||||.+.|+++|.++|+++|+++++|+++..+... +..+.++|++++|+||++ 
T Consensus       142 ~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~-  220 (397)
T TIGR01976       142 GELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFF-  220 (397)
T ss_pred             CCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhc-
Confidence               689999999888999999999999999999999999999999999999999765433 344568999999999998 


Q ss_pred             CCCCceeeEEEEcchh
Q 022194          204 GHSDVMAGVLAVKGER  219 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~  219 (301)
                      |+   +.|+++++++.
T Consensus       221 g~---~~G~l~~~~~~  233 (397)
T TIGR01976       221 GP---HMGILWGRPEL  233 (397)
T ss_pred             CC---ceEEEEEcHHH
Confidence            54   36888887553

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.87  E-value=9.1e-21  Score=167.39  Aligned_cols=213  Identities=22%  Similarity=0.193  Sum_probs=152.3

Q ss_pred             HHHHHHHHHhhcCCC-ceEEecch-HHHHH-HHHhcc----CCC-CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLL----GTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~-~~~~~~----~~g-~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      .+++++.++++++.+ +.+++++| ++++. ++..+.    ++| +.|++....|+++...+. .++..|++++.++.+ 
T Consensus        44 ~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~~  122 (353)
T TIGR03235        44 VERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIR-ALERNGFTVTYLPVDE  122 (353)
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHH-HHHhcCCEEEEEccCC
Confidence            678999999999876 44555555 68875 444443    355 778888888888776663 345678999988864 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          |++++++++++++++|++++++||||.+.|+++|.++|+++|+++++|++++.+... +....++|+++.|++|++
T Consensus       123 ~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~  202 (353)
T TIGR03235       123 SGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIY  202 (353)
T ss_pred             CCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcC
Confidence                789999999888999999999999999999999999999999999999999988765 334567999999999986


Q ss_pred             cCCCCceeeEEEEcchhHHH-HHHHhh-------hhcCCCCCHHhHHHHHccccc----HHHHHHHHHHHHHHHHHHHHh
Q 022194          203 AGHSDVMAGVLAVKGERLAK-ELYFLQ-------NAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~  270 (301)
                       ||+|  .|+++.+++.... .+....       .....+.+......+..+++.    .+++.+++.++.+.+++.|++
T Consensus       203 -gp~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~  279 (353)
T TIGR03235       203 -GPKG--IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT  279 (353)
T ss_pred             -CCCc--eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence             7877  5888888653211 011100       011123333333333333333    345567777778888888865


Q ss_pred             CCCc
Q 022194          271 HPRV  274 (301)
Q Consensus       271 ~~~v  274 (301)
                       +++
T Consensus       280 -~g~  282 (353)
T TIGR03235       280 -LGV  282 (353)
T ss_pred             -CCe
Confidence             444

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.87  E-value=9.8e-21  Score=172.05  Aligned_cols=168  Identities=18%  Similarity=0.241  Sum_probs=122.0

Q ss_pred             cccCC-CCch-HHHHHHHHHh-hc-C---C--CceEEecch-HHHHH-HHHh-----ccCCCCeEEEcCCCCccHHHHHh
Q 022194           48 DYTRS-GNPT-RDALESLLAK-LD-K---A--DRALCFTSG-MAALA-AVTH-----LLGTGEEIVAGDDLYGGTDRLLS  111 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~-~~-~---~--~~~i~~~sG-~~ai~-~~~~-----~~~~g~~Vlv~~~~y~~~~~~~~  111 (301)
                      .|.+. |.+. ++++.+.+.+ .. +   .  ++.|++++| ++++. ++.+     +++|||+|++++|.|+.+.....
T Consensus       129 ~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~  208 (527)
T PRK09275        129 NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPE  208 (527)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHH
Confidence            36655 6665 7777764433 22 2   1  224555555 68885 4443     68999999999999999873321


Q ss_pred             hhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHH--cCCEEEEeCCcC
Q 022194          112 RVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHA--HGALLLVDNSIM  179 (301)
Q Consensus       112 ~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~--~~~~li~D~~~~  179 (301)
                        ....+..++.++.+       |.+++++++.+++++|++++|+||||.+.+   +++|+++|++  ++++||+||+|.
T Consensus       209 --l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~  286 (527)
T PRK09275        209 --LPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG  286 (527)
T ss_pred             --HcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCCh
Confidence              22345666666531       678999988899999999999999999986   7888999965  599999999997


Q ss_pred             Ccccc--Ccc--CCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          180 SPVLS--RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       180 ~~~~~--~~~--~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      .....  ...  .....+++.||||.| |.+|+|.||++++++
T Consensus       287 ~f~~~~~s~~~~~~~~~I~v~SfSK~f-~mtG~RlG~i~~~~~  328 (527)
T PRK09275        287 TFVDDFRSLFAVLPYNTILVYSFSKYF-GATGWRLGVIALHED  328 (527)
T ss_pred             hhcccccCHHHhCCCCEEEEeehhhhc-cCcHhHHhhhhcCch
Confidence            54321  111  124679999999999 667899999999876

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.87  E-value=8.4e-21  Score=168.70  Aligned_cols=216  Identities=25%  Similarity=0.323  Sum_probs=164.6

Q ss_pred             hHHHHHHHHHhhcCCCc---eEEecchHHHHH-HHHhc---cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           56 TRDALESLLAKLDKADR---ALCFTSGMAALA-AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~~---~i~~~sG~~ai~-~~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      ..+++++.+++++|++.   +++++++++++. ++..+   +++|++|++.+..|++....|....+..|+++..++.+ 
T Consensus        44 ~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~  123 (371)
T PF00266_consen   44 ILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADP  123 (371)
T ss_dssp             HHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGT
T ss_pred             HHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence            37889999999999874   455666678886 44555   68999999999999999888888888899999888753 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          |++++++.+++++++|++++..|.+|...|+++|.++||++|+++++|.+++.+... +....++|++++|.+| +
T Consensus       124 ~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K-l  202 (371)
T PF00266_consen  124 GGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK-L  202 (371)
T ss_dssp             TSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS-T
T ss_pred             cchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEechhccccccccccccccceeeecccc-c
Confidence                789999999999999999999999999999999999999999999999999998875 4556789999999999 8


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhh---------------------hcCCCCCHHhHHHHHcccccH-----HHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQN---------------------AEGSGLAPFDCWICLRGVKTM-----ALRVEK  256 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~-----~~~~~~  256 (301)
                      +||+|+  |+++.+++.+ +++.....                     ....+.+....+.+..+++.+     +...++
T Consensus       203 ~gp~G~--g~l~v~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~  279 (371)
T PF00266_consen  203 GGPPGL--GFLYVRPEAI-ERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRER  279 (371)
T ss_dssp             TSSSTE--EEEEEEHHHH-HHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCch--hhheehhhhh-hccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhh
Confidence            799884  9999887543 33321100                     011233443344444444432     344566


Q ss_pred             HHHHHHHHHHHHHhCCCcc
Q 022194          257 QQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~v~  275 (301)
                      ..+..+++.+.|++.+.+.
T Consensus       280 ~~~l~~~~~~~l~~~~~~~  298 (371)
T PF00266_consen  280 IRELAEYLREALEELPGIE  298 (371)
T ss_dssp             HHHHHHHHHHHHHHTTTEE
T ss_pred             hhhHHHHHHhhhhcCCcee
Confidence            7777888888888877653

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.87  E-value=2.6e-20  Score=160.90  Aligned_cols=211  Identities=19%  Similarity=0.234  Sum_probs=166.9

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEe-cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           56 TRDALESLLAKLDKAD--RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~-~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ...++.+.+...++.+  +++++ +|||.++. ++..+++|||+||+.....++..  |..+++.+|.+++.+...    
T Consensus        39 ~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R--~~~ia~~~g~~v~~~~~~wg~~  116 (383)
T COG0075          39 IMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGER--FAEIAERYGAEVVVLEVEWGEA  116 (383)
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHH--HHHHHHHhCCceEEEeCCCCCC
Confidence            3778888899999877  44444 77788884 78889999999998877666553  568999999999988865    


Q ss_pred             -CHHHHHhhcC--CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccccc
Q 022194          128 -DLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 -d~~~l~~~l~--~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (301)
                       |+++++++++  ++.++|.+++..++||...|+++|+++||+||.++|+|.+-+.|... ...++|+|+++.+.+|+++
T Consensus       117 v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~  196 (383)
T COG0075         117 VDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALG  196 (383)
T ss_pred             CCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhcc
Confidence             8999999998  46889999999999999999999999999999999999999977654 7788999999999999999


Q ss_pred             CCCCceeeEEEEcchhHHHH---------------HHHhhh--hcCCCCCHHhHHHHHccccc-----HHHHHHHHHHHH
Q 022194          204 GHSDVMAGVLAVKGERLAKE---------------LYFLQN--AEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNA  261 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~---------------~~~~~~--~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~  261 (301)
                      +|||+  +++..+++.+...               .+.+..  .+..+.+....+++..+++.     ++.+.+++..++
T Consensus       197 ~PPGl--a~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~  274 (383)
T COG0075         197 APPGL--AFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLA  274 (383)
T ss_pred             CCCcc--ceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99995  8888876544221               111111  22344455555555556554     466788888999


Q ss_pred             HHHHHHHHh
Q 022194          262 QKIAEFLAS  270 (301)
Q Consensus       262 ~~l~~~l~~  270 (301)
                      +.+++.++.
T Consensus       275 ~a~r~~~~a  283 (383)
T COG0075         275 EALRAGLEA  283 (383)
T ss_pred             HHHHHHHHH
Confidence            999999885

>PLN02721 threonine aldolase

Probab=99.87  E-value=1.7e-20  Score=165.68  Aligned_cols=215  Identities=23%  Similarity=0.250  Sum_probs=149.3

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccC-CCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLG-TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~-~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      +...++++.++++++.+..+++++|++++. ++..+++ +||+|++++|+|....... ..+...|.+++.++.+     
T Consensus        40 ~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~  118 (353)
T PLN02721         40 PTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENG-GISTLGGVHPRTVKNNEDGTM  118 (353)
T ss_pred             HHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhccc-chhhhcCceeEecCCCcCCCc
Confidence            458899999999999988899999986654 5555676 9999999999986554210 1456678888888753     


Q ss_pred             CHHHHHhhcC-------CCceEEEEeCC-CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccc---c-Cc--cCCC
Q 022194          128 DLDEVASAIG-------PWTKLVWVESP-TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL---S-RP--LELG  190 (301)
Q Consensus       128 d~~~l~~~l~-------~~~~~v~i~~~-~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~---~-~~--~~~~  190 (301)
                      |++.+++.++       +++++|+++++ +||+|.+.+   +++|.++|+++|+++|+|++|..+..   . .+  ...+
T Consensus       119 d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~  198 (353)
T PLN02721        119 DLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKA  198 (353)
T ss_pred             CHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhh
Confidence            7899999987       57899999875 678898865   78999999999999999999764321   1 11  1236


Q ss_pred             CcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCH--HhHHHHHcccccHHHHHHHHHHHHHHHHHHH
Q 022194          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP--FDCWICLRGVKTMALRVEKQQDNAQKIAEFL  268 (301)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l  268 (301)
                      +|.++.|+||+++++   .+++++.+ +.+.+.+.......+.....  ..+.+...+++...++.++..++++.+.+.|
T Consensus       199 ~d~~~~s~sK~l~~~---~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L  274 (353)
T PLN02721        199 ADSVSVCLSKGLGAP---VGSVIVGS-KSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAEGL  274 (353)
T ss_pred             CCEEEEecccccCCc---eeeEEecC-HHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999654   23445544 55555544444433322221  1222233344443344455567778899999


Q ss_pred             HhCCCc
Q 022194          269 ASHPRV  274 (301)
Q Consensus       269 ~~~~~v  274 (301)
                      ++++++
T Consensus       275 ~~~~~~  280 (353)
T PLN02721        275 NQIKGL  280 (353)
T ss_pred             HhCCCc
Confidence            887665

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.87  E-value=2.5e-20  Score=161.27  Aligned_cols=211  Identities=25%  Similarity=0.278  Sum_probs=172.5

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh--ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTH--LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~--~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+...++++.+++++|++.++.++|||.|+.+.+.  -++|||+|+++..+|-.+.    +.....|.+++.++.+    
T Consensus        33 G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATa----n~i~~~Ga~PVFvDid~~T~  108 (374)
T COG0399          33 GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATA----NAVLLVGAKPVFVDIDPDTL  108 (374)
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHH----HHHHHcCCeEEEEecCCccc
Confidence            46689999999999999999999999999975444  3789999999999998886    6666789999999976    


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCC--CcEEEeccc--cc
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KF  201 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~--~di~~~S~s--K~  201 (301)
                        |++.+|+++.+++++|+   |-.-.|...++++|.++|++||++||+|.+++.|........|  .|+.++||+  |.
T Consensus       109 nid~~~ie~aIt~~tKAIi---pVhl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~  185 (374)
T COG0399         109 NIDPDLIEAAITPRTKAII---PVHLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKN  185 (374)
T ss_pred             CCCHHHHHHHcccCCeEEE---EehhccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCC
Confidence              89999999999999999   4455788899999999999999999999999988765444444  478888875  88


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhhcC----------------CCCCHHhHHHHHcccccHHHHHHHHHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEG----------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIA  265 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~  265 (301)
                      +...   -+|+++++++++.++.+.+....-                .-++..+++..+..|+.+++..++..+.++.+.
T Consensus       186 ittg---EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~  262 (374)
T COG0399         186 LTTG---EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYA  262 (374)
T ss_pred             cccc---CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8543   479999999998887765543211                234556677778888888888889999999999


Q ss_pred             HHHHhCCCc
Q 022194          266 EFLASHPRV  274 (301)
Q Consensus       266 ~~l~~~~~v  274 (301)
                      +.|++.+.+
T Consensus       263 ~~l~~~~~~  271 (374)
T COG0399         263 EALKGLPGI  271 (374)
T ss_pred             HHhhcCCCc
Confidence            999987653

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.87  E-value=7.4e-20  Score=162.57  Aligned_cols=208  Identities=16%  Similarity=0.115  Sum_probs=158.5

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHHHH-HHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~-~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      +.+++++++++++++.+++++++||++|+.+ +..+ +++||+|+++.+.|.++.    ..+...|++++.++.+     
T Consensus        31 ~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~----~~~~~~G~~~v~~d~d~~~~~  106 (375)
T PRK11706         31 GFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTA----NAFVLRGAKIVFVDIRPDTMN  106 (375)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHH----HHHHHcCCEEEEEecCCCcCC
Confidence            4589999999999999999999999999864 4444 789999999999999886    4456778999888753     


Q ss_pred             -CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC--ccCCCCcEEEeccc--ccc
Q 022194          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSAT--KFI  202 (301)
Q Consensus       128 -d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~--~~~~~~di~~~S~s--K~~  202 (301)
                       |++++++++++++++|+++   |++|...++++|.++|+++|+++|+|++|+.+....  +.....|+.++||+  |.+
T Consensus       107 ~d~~~le~~i~~~tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l  183 (375)
T PRK11706        107 IDETLIEAAITPKTRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNY  183 (375)
T ss_pred             cCHHHHHHhcCCCCeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCccc
Confidence             6899999998889999876   468999999999999999999999999998776322  22223578888877  998


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhhh-------------------cC--CCCCHHhHHHHHcccccHHHHHHHHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQNA-------------------EG--SGLAPFDCWICLRGVKTMALRVEKQQDNA  261 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~~-------------------~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (301)
                      +.  |. +|.++.+++.+.+++......                   .+  .-++...++.....++.+++..++..++.
T Consensus       184 ~~--g~-gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~~  260 (375)
T PRK11706        184 TA--GE-GGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLALW  260 (375)
T ss_pred             cc--cC-CeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43  32 466667777777665544421                   11  11244555556666777777778888888


Q ss_pred             HHHHHHHHhCC
Q 022194          262 QKIAEFLASHP  272 (301)
Q Consensus       262 ~~l~~~l~~~~  272 (301)
                      +++.+.|.+.+
T Consensus       261 ~~~~~~L~~~~  271 (375)
T PRK11706        261 QRYYDALAPLA  271 (375)
T ss_pred             HHHHHHhcCCC
Confidence            88888887765

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.87  E-value=2.2e-20  Score=165.59  Aligned_cols=211  Identities=18%  Similarity=0.175  Sum_probs=152.0

Q ss_pred             hHHHHHHHHHhhcCCCc----eEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---
Q 022194           56 TRDALESLLAKLDKADR----ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~~----~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---  127 (301)
                      ..+++++.++++++++.    +++++|||+++. ++.+++.+||++++..+.+++..  +...++..|.+++.++.+   
T Consensus        36 ~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v~~~~~~  113 (363)
T TIGR02326        36 VVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVVDTGEVE  113 (363)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCCC
Confidence            37788999999999852    445566789986 55677788888777666555442  235567788888877754   


Q ss_pred             --CHHHHHhhcCC--CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 --DLDEVASAIGP--WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 --d~~~l~~~l~~--~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                        |+++++++++.  ++++|.+++++||||...|+++|.++||++|+++++|++++.+..+ +....++|++++|+||++
T Consensus       114 ~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l  193 (363)
T TIGR02326       114 PPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCI  193 (363)
T ss_pred             CCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCcccc
Confidence              78999998874  4577889999999999999999999999999999999999877654 344568999999999999


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHH---------------hh---hhcCCCCCHHhHHHHHccccc------HHHHHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYF---------------LQ---NAEGSGLAPFDCWICLRGVKT------MALRVEKQQ  258 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~---------------~~---~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~  258 (301)
                      +||+|+  |+++.+++.+.+ +..               ..   .....+.+.....++.++++.      ++++.+++.
T Consensus       194 ~~p~G~--G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~  270 (363)
T TIGR02326       194 QGVPGF--GFVIARQAELAA-CKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQ  270 (363)
T ss_pred             ccCCcc--eEEEECHHHHHH-hhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            888874  999888664432 211               00   001123344444443333332      345667788


Q ss_pred             HHHHHHHHHHHhC
Q 022194          259 DNAQKIAEFLASH  271 (301)
Q Consensus       259 ~~~~~l~~~l~~~  271 (301)
                      +++.++.+.|+++
T Consensus       271 ~~~~~l~~~L~~~  283 (363)
T TIGR02326       271 QNQKTLVAGMRAL  283 (363)
T ss_pred             HHHHHHHHHHHHc
Confidence            8888899988765

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.87  E-value=1.3e-20  Score=167.93  Aligned_cols=215  Identities=19%  Similarity=0.163  Sum_probs=151.3

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhcc---CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL---GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~---~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---  127 (301)
                      .+++++.+++++|.+  +++++++|++++. ++..++   .++++|+++...|+++...+... +..|++++.++.+   
T Consensus        44 ~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~g  122 (379)
T TIGR03402        44 VEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHL-EKQGYKVTYLPVDEEG  122 (379)
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHH-HHcCCEEEEEccCCCC
Confidence            678889999999976  3555666688875 444432   45789999999998887666433 4578899888753   


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccC
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (301)
                        |++++++.++++++++++++++|+||...|+++|.++|+++|+++++|++++.+... +....++|+++.|.+|+ .|
T Consensus       123 ~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~-~g  201 (379)
T TIGR03402       123 RLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKL-HG  201 (379)
T ss_pred             cCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHc-CC
Confidence              789999999989999999999999999999999999999999999999999988654 34456899999999995 58


Q ss_pred             CCCceeeEEEEcchhHHHHHHH---hh-hhcCCCCCHHhHHHHHccccc----HHHHHHHHHHHHHHHHHHHHh-CCCcc
Q 022194          205 HSDVMAGVLAVKGERLAKELYF---LQ-NAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS-HPRVK  275 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~-~~~v~  275 (301)
                      |+|  .|+++.+++........   .. .....+.+......+..+++.    +++..++..++.+++.+.|++ ++++.
T Consensus       202 p~G--~g~l~v~~~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  279 (379)
T TIGR03402       202 PKG--VGALYIRKGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDAR  279 (379)
T ss_pred             CCc--eEEEEECCCCCCCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence            888  47887775431110000   00 011123333333333333333    333445566666777777764 66553

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.87  E-value=1.3e-20  Score=166.73  Aligned_cols=215  Identities=23%  Similarity=0.252  Sum_probs=165.1

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHHHHHhc--cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~~--~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+..+++++.+++++|.+.++.++|||.|+.+++..  +++||+|+++..++..+.    ..+...|.++++++.+    
T Consensus        24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~----~ai~~~G~~pv~~Di~~~~~   99 (363)
T PF01041_consen   24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATA----SAILWAGAEPVFVDIDPETL   99 (363)
T ss_dssp             SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHH----HHHHHTT-EEEEE-BETTTS
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHH----HHHHHhccEEEEEeccCCcC
Confidence            467999999999999999999999999999755444  569999999999999886    6667889999999965    


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCcc--CCCCcEEEeccc--cc
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL--ELGADIVMHSAT--KF  201 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~--~~~~di~~~S~s--K~  201 (301)
                        |++.+++++.+++++|++.+   ..|...++++|.++|+++|+++|+|.+++.|......  ..-.|+.++||+  |.
T Consensus       100 ~id~~~~~~~i~~~t~ai~~~h---~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~  176 (363)
T PF01041_consen  100 NIDPEALEKAITPKTKAILVVH---LFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKI  176 (363)
T ss_dssp             SB-HHHHHHHHHTTEEEEEEE----GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTSS
T ss_pred             CcCHHHHHHHhccCccEEEEec---CCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCCC
Confidence              89999999999999999654   4577789999999999999999999999988754332  223499999985  88


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhhc-----------------CCCCCHHhHHHHHcccccHHHHHHHHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAE-----------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKI  264 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (301)
                      +..+   -+|+++++++.+.++++.+....                 ..-++...++..+..++.+.+..++..++++.+
T Consensus       177 i~~g---eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y  253 (363)
T PF01041_consen  177 ITTG---EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQRY  253 (363)
T ss_dssp             S-SS---S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CcCC---CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            8543   37999999998888776654321                 123577778888888999999999999999999


Q ss_pred             HHHHHhCCCcceEe
Q 022194          265 AEFLASHPRVKKVN  278 (301)
Q Consensus       265 ~~~l~~~~~v~~v~  278 (301)
                      .+.|.+.+.+..+.
T Consensus       254 ~~~L~~~~~~~~~~  267 (363)
T PF01041_consen  254 REALAGIPGIKPPP  267 (363)
T ss_dssp             HHHHTTGTTEEEEG
T ss_pred             HHHHhcCCCccccc
Confidence            99999988764433

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.87  E-value=4.3e-20  Score=165.92  Aligned_cols=206  Identities=24%  Similarity=0.227  Sum_probs=142.3

Q ss_pred             HHHHHHhhcCCCce-EEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHh-hhcccCCcEEEEecC--C------C
Q 022194           60 LESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVNT--C------D  128 (301)
Q Consensus        60 l~~~l~~~~~~~~~-i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~-~~~~~~g~~~~~~~~--~------d  128 (301)
                      .++.+++++|.+.. +++++|++++. ++..++++||+|++++|.|.++...+. ..++..|.++..++.  +      |
T Consensus        70 ~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id  149 (402)
T cd00378          70 AIERAKKLFGAEYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLID  149 (402)
T ss_pred             HHHHHHHHhCCCceeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcC
Confidence            44567788998754 55578898885 677789999999999999987743211 124556765554432  2      7


Q ss_pred             HHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccc-----cCccCCCCcEEEecccccc
Q 022194          129 LDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFI  202 (301)
Q Consensus       129 ~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~-----~~~~~~~~di~~~S~sK~~  202 (301)
                      ++++++.+. .++++|++++++||  ...++++|+++|+++|+++|+|++|..+..     ..+.. +.|++++|+||++
T Consensus       150 ~~~l~~~i~~~~~~~v~~~~~~~~--~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~dv~~~s~sK~l  226 (402)
T cd00378         150 YDALEKMALEFKPKLIVAGASAYP--RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GADVVTTTTHKTL  226 (402)
T ss_pred             HHHHHHHHHhCCCCEEEecCcccC--CCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CCcEEEeccccCC
Confidence            999999885 67899998888764  567999999999999999999999754432     22233 6799999999998


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhhhcCCC-CCHHhHHH----HHcccc-cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSG-LAPFDCWI----CLRGVK-TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~l~-~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .|+   ++|+++++++.+.+.+.........+ .......+    +..... ...++++++.++++++.+.|+++
T Consensus       227 ~G~---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  298 (402)
T cd00378         227 RGP---RGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER  298 (402)
T ss_pred             CCC---CceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            554   57888887756666554433211111 11112211    122222 34566788888999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.87  E-value=2.7e-20  Score=167.94  Aligned_cols=205  Identities=23%  Similarity=0.190  Sum_probs=142.3

Q ss_pred             HHHHHhhcCCCce-EEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHh-hhcccCCcEEEEecCC------CHHH
Q 022194           61 ESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVNTC------DLDE  131 (301)
Q Consensus        61 ~~~l~~~~~~~~~-i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~-~~~~~~g~~~~~~~~~------d~~~  131 (301)
                      ++.+++++|.+.. +++++|++++. ++..++++||+|+++.+.|.++...+. ......|.+++.++.+      |+++
T Consensus        77 ~~~la~~~g~~~~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~  156 (416)
T PRK00011         77 IDRAKELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDE  156 (416)
T ss_pred             HHHHHHHhCCCceeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHH
Confidence            3488999998855 66678998885 666788999999999999976532111 1123445666666542      7899


Q ss_pred             HHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccc-----cCccCCCCcEEEecccccccCC
Q 022194          132 VASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGH  205 (301)
Q Consensus       132 l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~-----~~~~~~~~di~~~S~sK~~~g~  205 (301)
                      +++++++ ++++|+++.+.+  |...|+++|.++|+++|+++|+|++|..+..     ..... +.|++++|+||+++|+
T Consensus       157 l~~~i~~~~~k~v~~~~~~~--~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~~~S~~K~l~g~  233 (416)
T PRK00011        157 VEKLALEHKPKLIIAGASAY--SRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVVTTTTHKTLRGP  233 (416)
T ss_pred             HHHHHHhcCCCEEEECCCcC--CCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEEEecCCcCCCCC
Confidence            9999864 789888875544  5677999999999999999999999875543     22333 6899999999998655


Q ss_pred             CCceeeEEEEcchhHHHHHHHhhhhcCC-CCCHHhHHH----HHcccc-cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          206 SDVMAGVLAVKGERLAKELYFLQNAEGS-GLAPFDCWI----CLRGVK-TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       206 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~l~-~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                         ++|+++++++.+.+.+......... +.......+    ....++ .+.++.+++.++++++.+.|++.
T Consensus       234 ---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  302 (416)
T PRK00011        234 ---RGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER  302 (416)
T ss_pred             ---CceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence               5789998766666665544332211 111111111    112122 34667788999999999999875

>PRK14012 cysteine desulfurase; Provisional

Probab=99.86  E-value=1.5e-20  Score=168.89  Aligned_cols=215  Identities=18%  Similarity=0.162  Sum_probs=152.1

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEecchHHHHHH-HHhc----cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           56 TRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~~-~~~~----~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      ..+++++.+++++|.+  +++++++|++++.. +..+    .++||+|+++++.|+++...+.. ++..|++++.++.+ 
T Consensus        50 ~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~-~~~~g~~~~~v~~~~  128 (404)
T PRK14012         50 AVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTYLDPQS  128 (404)
T ss_pred             HHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHH-HHhCCCEEEEEccCC
Confidence            3778899999999986  36666777888753 3333    47899999999999888765533 34568888888754 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          |++++++++++++++|++++++|+||.+.|+++|.++|+++|+++|+|++++.+... +....++|++++|++|.+
T Consensus       129 ~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~  208 (404)
T PRK14012        129 NGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIY  208 (404)
T ss_pred             CCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhcc
Confidence                789999999999999999999999999999999999999999999999999988764 444567999999999977


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhh-------hcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQN-------AEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                       ||+|  .|+++.+++...+ +.....       ....+.+.........+++    ...+..++..+.++++.+.|+++
T Consensus       209 -gp~g--~G~l~~~~~~~~~-~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~  284 (404)
T PRK14012        209 -GPKG--IGALYVRRKPRVR-LEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDI  284 (404)
T ss_pred             -CCCc--eEEEEEecCCCCC-CCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence             6665  4776666543221 111000       0011112222111112222    23444566677777888888777


Q ss_pred             CCcc
Q 022194          272 PRVK  275 (301)
Q Consensus       272 ~~v~  275 (301)
                      +++.
T Consensus       285 ~~i~  288 (404)
T PRK14012        285 EEVY  288 (404)
T ss_pred             CCEE
Confidence            7653

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.86  E-value=1.3e-20  Score=168.16  Aligned_cols=215  Identities=18%  Similarity=0.121  Sum_probs=146.8

Q ss_pred             HHHHHHHhhcCC--CceEE-ecchHHHHHHHHh-c-----cCC-CCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           59 ALESLLAKLDKA--DRALC-FTSGMAALAAVTH-L-----LGT-GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        59 ~l~~~l~~~~~~--~~~i~-~~sG~~ai~~~~~-~-----~~~-g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      +.++.+.+.+++  ++.++ ++++++++..++. +     .++ +++|+++...|+++...+. .++..|++++.++.+ 
T Consensus        46 ~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~-~~~~~G~~v~~v~~~~  124 (382)
T TIGR03403        46 EALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCA-FLESLGVEVTYLPINE  124 (382)
T ss_pred             HHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHH-HHHHCCCEEEEEecCC
Confidence            333344444553  24454 4555688864433 3     245 4689999999988876663 456789999998864 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          |+++++++++++++++++++++||||.+.|+++|.++|+++|+++++|++++.+... +....++|+++.|+||++
T Consensus       125 ~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~  204 (382)
T TIGR03403       125 QGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFH  204 (382)
T ss_pred             CCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhC
Confidence                789999999988999999999999999999999999999999999999999877654 444568999999999986


Q ss_pred             cCCCCceeeEEEEcchhHHHH-HHH---hhhhcCCCCCHHhHHHHHccccc----HHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          203 AGHSDVMAGVLAVKGERLAKE-LYF---LQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                       ||+|+  |+++.++...... +..   .......+.+.....++..+++.    ++...++..+.++++.+.|++++++
T Consensus       205 -gp~G~--g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~  281 (382)
T TIGR03403       205 -GPKGV--GGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDV  281 (382)
T ss_pred             -CCCce--EEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence             78874  7777664421110 000   00011233444444344344332    3444456667777888888777766


Q ss_pred             ceE
Q 022194          275 KKV  277 (301)
Q Consensus       275 ~~v  277 (301)
                      ..+
T Consensus       282 ~~~  284 (382)
T TIGR03403       282 FVV  284 (382)
T ss_pred             EEE
Confidence            433

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK07908 hypothetical protein; Provisional

Probab=99.86  E-value=2e-20  Score=164.87  Aligned_cols=200  Identities=16%  Similarity=0.145  Sum_probs=139.8

Q ss_pred             HHHHHHHHHhhcCCC-ceEEecch-HHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CH
Q 022194           57 RDALESLLAKLDKAD-RALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DL  129 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~  129 (301)
                      ..++++.++++++.+ +.+++++| ++++..+.. ++++ .+++..|.|..+.    ..++..|.+++.++.+     |+
T Consensus        60 ~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l~~~-~viv~~P~y~~~~----~~~~~~G~~i~~v~~~~~~~~d~  133 (349)
T PRK07908         60 ERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-LRPR-RAAVVHPSFTEPE----AALRAAGIPVHRVVLDPPFRLDP  133 (349)
T ss_pred             hHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-cCCC-eEEEeCCCChHHH----HHHHHcCCEEEeeccCcccCcCh
Confidence            566777777777755 56666666 588876666 6774 5677889998775    5556788999888765     23


Q ss_pred             HHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc---Cc--cCCCCcEEEecccccccC
Q 022194          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---RP--LELGADIVMHSATKFIAG  204 (301)
Q Consensus       130 ~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~---~~--~~~~~di~~~S~sK~~~g  204 (301)
                      +    .+.++++++++++|+||||.+.+.++|.++|++ +.++|+||+|+.....   ..  ......+++.||||.+ +
T Consensus       134 ~----~l~~~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~-~  207 (349)
T PRK07908        134 A----AVPDDADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTW-S  207 (349)
T ss_pred             h----HhccCCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEeeccccc-C
Confidence            3    345678999999999999999999999999975 7889999998643211   11  1224568999999999 6


Q ss_pred             CCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcc-----cccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          205 HSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG-----VKTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+|+|.|++++++ .+.+.+......  +..++....++...     .+.+.+.++++.++++.+.+.|+++
T Consensus       208 l~GlRiG~~~~~~-~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  276 (349)
T PRK07908        208 LAGLRVGYALGAP-DVLARLTRGRAH--WPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV  276 (349)
T ss_pred             CccceeeeeecCH-HHHHHHHhcCCC--CCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6789999999864 455554443322  33333333332222     2345556677788888888888875

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.86  E-value=5.3e-20  Score=166.40  Aligned_cols=210  Identities=19%  Similarity=0.158  Sum_probs=150.1

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC------
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT------  126 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~------  126 (301)
                      .+...+|++.++++++.++++++++|++|+. ++..+++||| |++++|.|..+.    ......|.+++.++.      
T Consensus        77 ~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~----~~i~~~G~~~v~v~~~~~~~~  151 (460)
T PRK13238         77 SRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTR----AHIELNGATAVDLVIDEALDT  151 (460)
T ss_pred             CCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchH----HHHHHcCCEEEEEeccccccc
Confidence            3457889999999999999988899999985 6677899999 999999888885    444567777777764      


Q ss_pred             ---------CCHHHHHhhcC----CCceEEEEeCCCCCcc-ccc---cHHHHHHHHHHcCCEEEEeCCcCCc-c------
Q 022194          127 ---------CDLDEVASAIG----PWTKLVWVESPTNPRQ-QIC---DIRKIAEMAHAHGALLLVDNSIMSP-V------  182 (301)
Q Consensus       127 ---------~d~~~l~~~l~----~~~~~v~i~~~~np~G-~~~---~l~~l~~l~~~~~~~li~D~~~~~~-~------  182 (301)
                               .|++++++.+.    +++++|++++|+||+| .+.   ++++|+++|++||+++|+|+++... .      
T Consensus       152 ~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~  231 (460)
T PRK13238        152 GSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQR  231 (460)
T ss_pred             cccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhc
Confidence                     26889999987    3699999999999998 555   4789999999999999999987431 1      


Q ss_pred             ----ccCcc-------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh-----cCCCCCHHhHHHHHcc
Q 022194          183 ----LSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-----EGSGLAPFDCWICLRG  246 (301)
Q Consensus       183 ----~~~~~-------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  246 (301)
                          .....       ....|+++.|.+|...+|   .+|+++++++.+.+.++.....     ...+.+...+.++..+
T Consensus       232 e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~---~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~  308 (460)
T PRK13238        232 EPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVN---IGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVG  308 (460)
T ss_pred             cccccCCCHHHHhhhhcccCcEEEEecccCCCCc---ceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhh
Confidence                11110       124789999999987665   3688888876777766554311     1122333323444334


Q ss_pred             ccc-H-HHHHHHHHHHHHHHHHHHHhC
Q 022194          247 VKT-M-ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       247 l~~-~-~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++. + .+..+...+++++|.+.|++.
T Consensus       309 l~e~~~~~~~~~~~~~~~~l~~~L~~~  335 (460)
T PRK13238        309 LYEGMDEDYLAYRIGQVEYLGEGLEEA  335 (460)
T ss_pred             HHHhhChHHHHHHHHHHHHHHHHHHHC
Confidence            332 1 234445555678888988764

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.86  E-value=2.3e-20  Score=166.38  Aligned_cols=253  Identities=18%  Similarity=0.146  Sum_probs=163.0

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      ..++||.++  ++|+|. ++|.+.......-..   .......+..+...+++++++++++.+++++++||++++.+++.
T Consensus        27 ~~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~---~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~  102 (379)
T TIGR00707        27 KEYLDFVAGIAVNSLGH-AHPKLVEALKEQLEK---LVHVSNLYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALK  102 (379)
T ss_pred             CEEEEcCcchhhccCCC-CCHHHHHHHHHHHhh---ccccccccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHH
Confidence            478999844  789998 455555443222111   11111122345699999999999999988899999988864434


Q ss_pred             cc----C----CCCeEEEcCCCCccHHHHHhhhc---------ccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCC
Q 022194           89 LL----G----TGEEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (301)
Q Consensus        89 ~~----~----~g~~Vlv~~~~y~~~~~~~~~~~---------~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np  151 (301)
                      ++    .    ++|+|+++++.||++........         .....++..++..|++.+++.+.+++++|++++++++
T Consensus       103 ~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~  182 (379)
T TIGR00707       103 LARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQGE  182 (379)
T ss_pred             HHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccccC
Confidence            32    2    37999999999988753321111         0111233344445899999999888999999877777


Q ss_pred             ccccc----cHHHHHHHHHHcCCEEEEeCCcCCcccc-C--c-cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          152 RQQIC----DIRKIAEMAHAHGALLLVDNSIMSPVLS-R--P-LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       152 ~G~~~----~l~~l~~l~~~~~~~li~D~~~~~~~~~-~--~-~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                      +|...    ++++|.++|+++|+++|+||+|...... .  + ...+.+..+.++||.++  +|++.|++++++ .+.+.
T Consensus       183 ~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~--~G~riG~~~~~~-~~~~~  259 (379)
T TIGR00707       183 GGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLG--GGVPIGATLAKE-EVAEA  259 (379)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEEccccc--CCcccEEEEEcH-HHHhh
Confidence            77643    3899999999999999999998732121 1  1 11122222347899995  568899999874 45554


Q ss_pred             HHHhhhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHh
Q 022194          224 LYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~  270 (301)
                      +.........+.++..+.++..+++.+  .+..+++.++.+.+++.|++
T Consensus       260 ~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~  308 (379)
T TIGR00707       260 FTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEE  308 (379)
T ss_pred             hcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            443323333445666666666555543  23556667777777777765

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.86  E-value=4.5e-20  Score=167.55  Aligned_cols=167  Identities=20%  Similarity=0.250  Sum_probs=119.7

Q ss_pred             cc-CCCC-chHHHHH-HHHHhhcC----CCc--eEEecch-HHHHH-HHHh-----ccCCCCeEEEcCCCCccHHHHHhh
Q 022194           49 YT-RSGN-PTRDALE-SLLAKLDK----ADR--ALCFTSG-MAALA-AVTH-----LLGTGEEIVAGDDLYGGTDRLLSR  112 (301)
Q Consensus        49 y~-~~g~-~~~~~l~-~~l~~~~~----~~~--~i~~~sG-~~ai~-~~~~-----~~~~g~~Vlv~~~~y~~~~~~~~~  112 (301)
                      |. +.|. +.++++. +++.+..+    .++  .+++++| ++|+. ++.+     +++|||+|++++|.|+.+..... 
T Consensus       124 Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~-  202 (521)
T TIGR03801       124 YPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE-  202 (521)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH-
Confidence            53 3344 4466655 45555432    222  4555555 68885 4444     68999999999999999874321 


Q ss_pred             hcccCCcEEEEecCC------------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHc--CCEEEEe
Q 022194          113 VTPKTGVVVKRVNTC------------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAH--GALLLVD  175 (301)
Q Consensus       113 ~~~~~g~~~~~~~~~------------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~--~~~li~D  175 (301)
                       ....|.+++.++.+            |.+++++++++++++|++++|+||||.+.+   +++|+++|+++  +++||+|
T Consensus       203 -l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~D  281 (521)
T TIGR03801       203 -LPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTD  281 (521)
T ss_pred             -HhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEEC
Confidence             23346666666532            567888888889999999999999999986   78889999986  8999999


Q ss_pred             CCcCCcccc--Ccc--CCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          176 NSIMSPVLS--RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       176 ~~~~~~~~~--~~~--~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      |+|+.....  ...  .....+++.|+||.| |.+|+|.|+++++++
T Consensus       282 EvY~~f~~~~~sl~~~~~~~vI~v~SfSK~f-g~~G~RlG~i~~~~~  327 (521)
T TIGR03801       282 DVYGTFVDDFRSLFAELPYNTIGVYSFSKYF-GATGWRLGTIALHKD  327 (521)
T ss_pred             CCchhhcccccchhhhCCCCEEEEEcchhhc-cCchhhhhhhhcCch
Confidence            999754321  111  123679999999999 667899999999865

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK08637 hypothetical protein; Provisional

Probab=99.86  E-value=1.9e-19  Score=160.84  Aligned_cols=223  Identities=15%  Similarity=0.156  Sum_probs=142.8

Q ss_pred             CCccccCC-CCch-HHHHHHHHHhhc---CCC--ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcc
Q 022194           45 GPYDYTRS-GNPT-RDALESLLAKLD---KAD--RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP  115 (301)
Q Consensus        45 ~~~~y~~~-g~~~-~~~l~~~l~~~~---~~~--~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~  115 (301)
                      ..+.|++. |.+. ++.+.+++.+..   ..+  +.+++++| ++++. ++..++++||+|++++|.|+.+...+   ..
T Consensus        36 ~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~---~~  112 (388)
T PRK08637         36 EIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTF---NT  112 (388)
T ss_pred             cccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHH---HH
Confidence            44567765 7665 677776665543   222  34566666 58886 55667899999999999999996322   23


Q ss_pred             cCCcEEEEecC--C----CHHHHHhhcC----CCceEEEEeCCCCCcccccc---HHHHHHHHHH-----cCCEEEEeCC
Q 022194          116 KTGVVVKRVNT--C----DLDEVASAIG----PWTKLVWVESPTNPRQQICD---IRKIAEMAHA-----HGALLLVDNS  177 (301)
Q Consensus       116 ~~g~~~~~~~~--~----d~~~l~~~l~----~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~-----~~~~li~D~~  177 (301)
                      ..|.+++.++.  +    |++++++.++    +...++++++||||||.+.+   +++|+++|++     ++++||+||+
T Consensus       113 ~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~  192 (388)
T PRK08637        113 RRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDA  192 (388)
T ss_pred             hcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEeccc
Confidence            46788888775  2    6888888876    45566778899999999975   6777887765     8999999999


Q ss_pred             cCCccccC--------c--cCCCCc--EEEecccccccCCCCceeeEEEEcc-----hhHHHHHHHh----hhhcCCCCC
Q 022194          178 IMSPVLSR--------P--LELGAD--IVMHSATKFIAGHSDVMAGVLAVKG-----ERLAKELYFL----QNAEGSGLA  236 (301)
Q Consensus       178 ~~~~~~~~--------~--~~~~~d--i~~~S~sK~~~g~~g~~~g~~~~~~-----~~~~~~~~~~----~~~~~~~~~  236 (301)
                      |....+..        .  ...+..  +++.|+||.+ +.+|+|.||++.+.     +.+.+.+...    ........+
T Consensus       193 Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~-~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s  271 (388)
T PRK08637        193 YFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEE-FVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGP  271 (388)
T ss_pred             chhcccCCccchhhHHHhhcccccceEEEeccccccC-CCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCC
Confidence            87543321        0  111233  3456999998 56789999998653     4555544321    111222344


Q ss_pred             HHhHHHHHccccc--H----HHHHHHHHHHHHHHHHHHHhC
Q 022194          237 PFDCWICLRGVKT--M----ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       237 ~~~~~~~~~~l~~--~----~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ...+.++...+..  +    .+.+..+.++.+.+.+.|+++
T Consensus       272 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~  312 (388)
T PRK08637        272 HPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDG  312 (388)
T ss_pred             cHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4454454444432  2    222334555555666777654

>PRK07505 hypothetical protein; Provisional

Probab=99.86  E-value=4.3e-20  Score=165.74  Aligned_cols=250  Identities=16%  Similarity=0.146  Sum_probs=161.7

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccC--CCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTR--SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~--~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      ..++||+ +++|+|+.++|.+..+...+.+.........++  ...+..+++++.++++++. +.+++++|++|...++.
T Consensus        46 ~~~ld~~-s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~  123 (402)
T PRK07505         46 HTFVNFV-SCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILP  123 (402)
T ss_pred             ceEEEee-cCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHH
Confidence            4799999 689999888888877653332211100111111  2344589999999999988 78889999877753332


Q ss_pred             c-----cCCC-CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHH
Q 022194           89 L-----LGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (301)
Q Consensus        89 ~-----~~~g-~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~  162 (301)
                      +     ..++ ..|++.+..||+.......... .+..++.++..|++++++++.+++++++++.|+||+|.+.++++|.
T Consensus       124 ~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~i~  202 (402)
T PRK07505        124 LLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETIDHNDLDALEDICKTNKTVAYVADGVYSMGGIAPVKELL  202 (402)
T ss_pred             HHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeCCCCHHHHHHHHhcCCCEEEEEecccccCCcCCHHHHH
Confidence            2     2223 2466777777765422222232 3568888888899999999887788999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCcccc------C---cc--CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhc
Q 022194          163 EMAHAHGALLLVDNSIMSPVLS------R---PL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  231 (301)
Q Consensus       163 ~l~~~~~~~li~D~~~~~~~~~------~---~~--~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~  231 (301)
                      ++|+++|+++|+||+|+.+.+.      .   ..  ....++++.|++|.++++    +|+++..++.+.+.+......+
T Consensus       203 ~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~----Gg~~~~~~~~~~~~~~~~~~~~  278 (402)
T PRK07505        203 RLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS----GGVIMLGDAEQIELILRYAGPL  278 (402)
T ss_pred             HHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc----CeEEEeCCHHHHHHHHHhCCCc
Confidence            9999999999999998542211      0   11  123468888999999643    3676665556666554433322


Q ss_pred             C--CCCCHHhHHHHHcccc-----cHHHHHHHHHHHHHHHHHH
Q 022194          232 G--SGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEF  267 (301)
Q Consensus       232 ~--~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~  267 (301)
                      .  ...++..++++...++     .+.++.+++.++.+.+.+.
T Consensus       279 t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~  321 (402)
T PRK07505        279 AFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSL  321 (402)
T ss_pred             eeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence            2  2344445555444433     2334445555555444443

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.86  E-value=1.8e-20  Score=168.17  Aligned_cols=254  Identities=20%  Similarity=0.133  Sum_probs=167.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC---CceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~---~~~i~~~sG~~ai~~   85 (301)
                      ..++||.++  ++++|. ++|.+........+  . .......+..+...++++++++.++.   +++++++||++|+..
T Consensus        43 ~~~lD~~s~~~~~~lG~-~~p~v~~ai~~~~~--~-~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~  118 (398)
T PRK03244         43 KEYLDLLGGIAVNALGH-AHPAVVEAVTRQLA--T-LGHVSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEA  118 (398)
T ss_pred             CEEEECCcCHhhccCCC-CCHHHHHHHHHHHH--h-ccCccCccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHH
Confidence            478999743  778997 45666544322211  1 11111223455578999999999874   367777888999864


Q ss_pred             HHh-ccCCC-CeEEEcCCCCccHHHHHhhhc---------ccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccc
Q 022194           86 VTH-LLGTG-EEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (301)
Q Consensus        86 ~~~-~~~~g-~~Vlv~~~~y~~~~~~~~~~~---------~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~  154 (301)
                      ++. +..+| ++|+..++.||++........         ...+..+..++..|++.+++.+.+++++|+++.++||+|.
T Consensus       119 al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aviiep~~~~~G~  198 (398)
T PRK03244        119 AFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDDDTAAVFLEPIQGEAGV  198 (398)
T ss_pred             HHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcCCeEEEEEecccCCCCC
Confidence            433 33344 567777889998853321111         1112345556666899999999888999999999999999


Q ss_pred             ccc----HHHHHHHHHHcCCEEEEeCCcCCccc-cCc---cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHH
Q 022194          155 ICD----IRKIAEMAHAHGALLLVDNSIMSPVL-SRP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (301)
Q Consensus       155 ~~~----l~~l~~l~~~~~~~li~D~~~~~~~~-~~~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~  226 (301)
                      +.|    +++|.++|++||+++|+||+|+.... ...   ...+.+..+.+++|+++  +|++.|+++++++ +.+.+..
T Consensus       199 ~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~l~--~G~~ig~~~~~~~-~~~~~~~  275 (398)
T PRK03244        199 VPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKGLG--GGLPIGACLAFGP-AADLLTP  275 (398)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchhhh--CCcccEEEEEcHH-HHhhccC
Confidence            986    89999999999999999999863211 111   11233233457899995  3578899998765 5454433


Q ss_pred             hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhC
Q 022194          227 LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .........++..+.++...++.+.  +..++..+..+++++.|++.
T Consensus       276 ~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~  322 (398)
T PRK03244        276 GLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEAL  322 (398)
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            2233445667777777777766442  45567777778888888873

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.86  E-value=5.7e-21  Score=160.88  Aligned_cols=243  Identities=19%  Similarity=0.219  Sum_probs=171.4

Q ss_pred             CCCCCCccccCeeecceeecCCCCCCCCccccCC--CCch-HHHHHHHHHhhcCCCceEEecchHHHH-HHHHhcc--CC
Q 022194           19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPT-RDALESLLAKLDKADRALCFTSGMAAL-AAVTHLL--GT   92 (301)
Q Consensus        19 ~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~~~-~~~l~~~l~~~~~~~~~i~~~sG~~ai-~~~~~~~--~~   92 (301)
                      +|||+|++.+|.+..+.-...+ ....+-+-.+.  |... -.+|+..|+++.+.+.+++|+|+.-|. +++..+.  -|
T Consensus       178 SNDYLgms~Hp~V~~A~~~tl~-~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak~lp  256 (570)
T KOG1360|consen  178 SNDYLGMSRHPEVLDAMHDTLD-RHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAKKLP  256 (570)
T ss_pred             cCccccccCChHHHHHHHHHHH-HcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHHHCC
Confidence            6999999999999877532211 11122233333  5544 789999999999999999999996444 3343332  24


Q ss_pred             CCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC----CCceEEEEeCCCCCccccccHHHHHHHHHHc
Q 022194           93 GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHAH  168 (301)
Q Consensus        93 g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~  168 (301)
                      |-+|.-....|-+..    .-++..++.-...-.+|++.|+++++    .-+++|.++..+.++|.++|++||++++++|
T Consensus       257 gcei~SD~gNHASMI----~GIrns~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~y  332 (570)
T KOG1360|consen  257 GCEIFSDEGNHASMI----QGIRNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKY  332 (570)
T ss_pred             CcEEeccccchHHHH----HHhhhcCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHh
Confidence            555544444444333    33444555555555678888888886    3578999999999999999999999999999


Q ss_pred             CCEEEEeCCcCCccccC---------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh--cCCCCCH
Q 022194          169 GALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLAP  237 (301)
Q Consensus       169 ~~~li~D~~~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~  237 (301)
                      |++.++||+|..|.++.         ......||+.+++.|+||.    .+|++.... .+.+.++.....  ++.+++|
T Consensus       333 GAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc----VGGYIAat~-~LvDmiRSyAaGFIFTTSLPP  407 (570)
T KOG1360|consen  333 GAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC----VGGYIAATR-KLVDMIRSYAAGFIFTTSLPP  407 (570)
T ss_pred             CceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc----ccceehhhh-hHHHHHHHhcCceEEecCCCh
Confidence            99999999998877752         1122469999999999964    478888764 566766665544  3456777


Q ss_pred             HhHHHHHcccccH-----HHHHHHHHHHHHHHHHHHHhC
Q 022194          238 FDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       238 ~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .....++++.+.+     ...+++.+++.+++++.|.++
T Consensus       408 ~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~  446 (570)
T KOG1360|consen  408 MVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL  446 (570)
T ss_pred             HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc
Confidence            7766666665543     345567788888999998874

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.86  E-value=1e-19  Score=163.77  Aligned_cols=209  Identities=22%  Similarity=0.189  Sum_probs=163.5

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc---------cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEe
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL---------LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~---------~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~  124 (301)
                      +...++++.++++++.+.+++++||++++. ++..+         ++|||+|++++++|..+..    .+...|..++.+
T Consensus        63 ~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~----~v~~~G~~pv~v  138 (438)
T PRK15407         63 RFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVN----PIIQNGLVPVFV  138 (438)
T ss_pred             hhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHH----HHHHcCCEEEEE
Confidence            558899999999999999999999998875 44433         5889999999999998863    344568888877


Q ss_pred             cCC------CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCC--CcEEEe
Q 022194          125 NTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMH  196 (301)
Q Consensus       125 ~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~--~di~~~  196 (301)
                      +.+      |++.+++++.+++++|+++++   .|...++++|.++|+++|+++|+|++++.|........|  .|+.++
T Consensus       139 dvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~gd~~~f  215 (438)
T PRK15407        139 DVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFGDIATL  215 (438)
T ss_pred             ecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccCceEEE
Confidence            753      789999999889999998864   577789999999999999999999999988754332222  288899


Q ss_pred             ccc--ccccCCCCceeeEEEEcchhHHHHHHHhhhh-------------------------------------cC--CCC
Q 022194          197 SAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNA-------------------------------------EG--SGL  235 (301)
Q Consensus       197 S~s--K~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~-------------------------------------~~--~~~  235 (301)
                      ||+  |.+...   -+|+++++++.+.++++.....                                     .|  ..+
T Consensus       216 Sf~~~k~~~~g---eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rm  292 (438)
T PRK15407        216 SFYPAHHITMG---EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKI  292 (438)
T ss_pred             eCCCCCCcccc---CceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCc
Confidence            986  556432   2699999998887765544321                                     01  234


Q ss_pred             CHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                      +...++..+..++.+++..++..++++++.+.|.+.++
T Consensus       293 sel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~  330 (438)
T PRK15407        293 TDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLED  330 (438)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            56667777888888999999999999999999987764

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.86  E-value=3e-20  Score=166.10  Aligned_cols=253  Identities=15%  Similarity=0.123  Sum_probs=165.1

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      ..++||.++  +.++|. ++|.+..+...+.+  + .......+..+...++++.|++..+.+++++++||++|+..++.
T Consensus        31 ~~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~--~-~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~  106 (389)
T PRK01278         31 ERYLDFASGIAVNSLGH-AHPHLVEALKEQAE--K-LWHVSNLYRIPEQERLAERLVENSFADKVFFTNSGAEAVECAIK  106 (389)
T ss_pred             CEEEECCccHhhccCCC-CCHHHHHHHHHHHH--h-cCccccccCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHH
Confidence            478999743  679999 55555544322211  1 11111112456688999999998877888999999999864433


Q ss_pred             c-----cCCCC----eEEEcCCCCccHHHHHhhhcccC---------CcEEEEecCCCHHHHHhhcCCCceEEEEeCCCC
Q 022194           89 L-----LGTGE----EIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (301)
Q Consensus        89 ~-----~~~g~----~Vlv~~~~y~~~~~~~~~~~~~~---------g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~n  150 (301)
                      +     ..+||    +|++.++.||++...........         .-.+..++..|++.+++.+.+++++|+++.+++
T Consensus       107 ~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avivep~~~  186 (389)
T PRK01278        107 TARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIEPIQG  186 (389)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEecccC
Confidence            2     34555    89999999998864432111100         011233455689999999988899999998888


Q ss_pred             Cccccc----cHHHHHHHHHHcCCEEEEeCCcCCccc-cC---ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHH
Q 022194          151 PRQQIC----DIRKIAEMAHAHGALLLVDNSIMSPVL-SR---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (301)
Q Consensus       151 p~G~~~----~l~~l~~l~~~~~~~li~D~~~~~~~~-~~---~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~  222 (301)
                      ++|...    .+++|+++|++||+++|+||+|..... ..   ....+.+..+.+++|.++  +|++.|+++++++ +.+
T Consensus       187 ~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~--~G~~ig~~~~~~~-~~~  263 (389)
T PRK01278        187 EGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIG--GGFPLGACLATEE-AAK  263 (389)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhcc--CCcceEEEEEcHH-HHh
Confidence            888443    499999999999999999999873222 11   112244444668999995  4678999988754 445


Q ss_pred             HHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          223 ELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      .+.........+.++..++++...++.+.  +..++..++.+++++.|+.
T Consensus       264 ~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~  313 (389)
T PRK01278        264 GMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEG  313 (389)
T ss_pred             ccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            44333333445567777777767666542  2345555666666666553

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.85  E-value=8.8e-20  Score=162.03  Aligned_cols=211  Identities=17%  Similarity=0.176  Sum_probs=152.7

Q ss_pred             hHHHHHHHHHhhcCCC---c-eEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---
Q 022194           56 TRDALESLLAKLDKAD---R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~---~-~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---  127 (301)
                      ..+++++.+++++|.+   + .+++++|++++. ++.++..+||.|++..+.|++..  +...++..|++++.++.+   
T Consensus        38 ~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~~  115 (368)
T PRK13479         38 LTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGAR--IAQIAEYLGIAHVVLDTGEDE  115 (368)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHH--HHHHHHHcCCcEEEEECCCCC
Confidence            4889999999999875   2 345677788885 67778889999999888776553  235567788888888764   


Q ss_pred             --CHHHHHhhcCC--CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 --DLDEVASAIGP--WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 --d~~~l~~~l~~--~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                        |++++++.+++  ++++|++++++||||...|+++|.++|+++|+++|+|++++.+... +....+.|+++.|++|++
T Consensus       116 ~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l  195 (368)
T PRK13479        116 PPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCI  195 (368)
T ss_pred             CCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCcccc
Confidence              68999988863  4678999999999999999999999999999999999988776543 333457899999999999


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhh-----------------hcCCCCCHHhHHHHHccccc------HHHHHHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQN-----------------AEGSGLAPFDCWICLRGVKT------MALRVEKQQD  259 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~  259 (301)
                      .||+|+  |+++++++.+ +.+.....                 ....+.+....+.+..+++.      +++..+++.+
T Consensus       196 ~g~~G~--G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~  272 (368)
T PRK13479        196 EGVPGF--GFVIARRSEL-EACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYAN  272 (368)
T ss_pred             ccCCCc--eEEEECHHHH-HHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            888884  9998876543 33222110                 00012333332232223222      3455677788


Q ss_pred             HHHHHHHHHHhC
Q 022194          260 NAQKIAEFLASH  271 (301)
Q Consensus       260 ~~~~l~~~l~~~  271 (301)
                      +++.+.+.|+++
T Consensus       273 ~~~~l~~~L~~~  284 (368)
T PRK13479        273 NQRTLVAGMRAL  284 (368)
T ss_pred             HHHHHHHHHHHc
Confidence            888888888775

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.85  E-value=2e-19  Score=152.22  Aligned_cols=218  Identities=16%  Similarity=0.208  Sum_probs=162.9

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcC------CCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDK------ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~------~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      .|.++ |.+. ++++.+.+.+.-+      ++++++++++|.|.. ++.-+..|||.-+++.|.|+++.+   .+.=+.|
T Consensus       116 ~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdr---dl~~rTg  192 (471)
T KOG0256|consen  116 MFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDR---DLRWRTG  192 (471)
T ss_pred             hcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccc---cceeccC
Confidence            46666 8777 8888888876643      346666666688886 556678999999999999999974   4445778


Q ss_pred             cEEEEecCC-------CHHHHHhhcC------CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcc
Q 022194          119 VVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~l~------~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~  182 (301)
                      ++++++...       +++.+|+++.      .+++.|++++|+||.|...+   +..+.+++.++++-+|+||+|+..+
T Consensus       193 veivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sV  272 (471)
T KOG0256|consen  193 VEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSV  272 (471)
T ss_pred             ceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccc
Confidence            888888864       5788887775      58899999999999999976   6667788899999999999998776


Q ss_pred             ccCcc-------------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc--
Q 022194          183 LSRPL-------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV--  247 (301)
Q Consensus       183 ~~~~~-------------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--  247 (301)
                      +....             .....-++.|+||-| |.||+|.|.++..++.+......+......  ++..++.+..-+  
T Consensus       273 F~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~-GlpGfRvGviYS~ne~VvsaA~kmssf~~v--Ss~tQ~~la~LLSD  349 (471)
T KOG0256|consen  273 FDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDF-GLPGFRVGVIYSNNEDVVSAATKMSSFGLV--SSQTQYLLASLLSD  349 (471)
T ss_pred             cCccCceEHHHHhhccccCCCcEEEEEEecccc-CCCceEEEEEEecChHHHHHHHHHhhccCC--cHHHHHHHHHHhch
Confidence            65321             223457889999999 778999999999998887766666554442  333333322221  


Q ss_pred             cc-----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          248 KT-----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       248 ~~-----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++     +.+..+++..+.+++.+.|++.
T Consensus       350 ~~f~~~yl~en~~Rl~~rh~~~~~gLk~l  378 (471)
T KOG0256|consen  350 EEFTREYLRENNKRLRIRHRYIVEGLKAL  378 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence            22     3566677888888888888874

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.85  E-value=6.8e-20  Score=164.46  Aligned_cols=164  Identities=26%  Similarity=0.293  Sum_probs=128.9

Q ss_pred             CCch-HHHHHHHHHhhcCCC--ceEEecchH-HHHHH-HHhccCC--CCeEEEcCCCCccHHHHHhhhcccCCcEEEEec
Q 022194           53 GNPT-RDALESLLAKLDKAD--RALCFTSGM-AALAA-VTHLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (301)
Q Consensus        53 g~~~-~~~l~~~l~~~~~~~--~~i~~~sG~-~ai~~-~~~~~~~--g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~  125 (301)
                      |.+. ++++++++++++|.+  +++++++|+ ++..+ ....+.+  ||+|+++++.|+.+...+....+..|.+++.++
T Consensus        61 g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~  140 (398)
T cd00613          61 GRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVP  140 (398)
T ss_pred             hHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEec
Confidence            5555 889999999999887  666777666 44443 3344555  999999999999998777555556668888887


Q ss_pred             CC-----CHHHHHhhcCCCceEEEEeCCCCCccccccH-HHHHHHHHHcCCEEEEeCCcCCcc-ccCccCCCCcEEEecc
Q 022194          126 TC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI-RKIAEMAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSA  198 (301)
Q Consensus       126 ~~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l-~~l~~l~~~~~~~li~D~~~~~~~-~~~~~~~~~di~~~S~  198 (301)
                      .+     |++++++++.+++++|++++++ ++|.+.++ ++|+++|+++|+++|+|++++.+. ...+...++|++++|+
T Consensus       141 ~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~  219 (398)
T cd00613         141 SDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNL  219 (398)
T ss_pred             cCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeec
Confidence            54     6799999998899999999985 89999885 999999999999999999986543 3344566899999999


Q ss_pred             cccccCC---CCceeeEEEEcch
Q 022194          199 TKFIAGH---SDVMAGVLAVKGE  218 (301)
Q Consensus       199 sK~~~g~---~g~~~g~~~~~~~  218 (301)
                      ||++ +|   +|.++|+++.+++
T Consensus       220 ~K~~-~p~g~Ggp~~g~l~~~~~  241 (398)
T cd00613         220 QKTG-VPHGGGGPGAGFFAVKKE  241 (398)
T ss_pred             cccC-CCCCCCCCceeEEEEhhh
Confidence            9998 54   2356789988754

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.85  E-value=2.2e-19  Score=158.65  Aligned_cols=212  Identities=18%  Similarity=0.199  Sum_probs=150.7

Q ss_pred             chHHHHHHHHHhhcCCCc----eEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           55 PTRDALESLLAKLDKADR----ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~----~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      +..+++++.+++++|.++    .+++++|++++. ++..++.++|+|++..+.+++..  +...++..|.+++.++.+  
T Consensus        31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~~~  108 (355)
T TIGR03301        31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFSEY  108 (355)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhH--HHHHHHHcCCceEEEecCCC
Confidence            448899999999999762    335678888886 56667788888776666554431  235566778888887753  


Q ss_pred             ---CHHHHHhhcCC--CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccc
Q 022194          128 ---DLDEVASAIGP--WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (301)
Q Consensus       128 ---d~~~l~~~l~~--~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~  201 (301)
                         |++++++.+++  +++.+++++++|++|...|+++|+++|+++|+++|+|++++.+... .....+.|++++|++|+
T Consensus       109 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~  188 (355)
T TIGR03301       109 EPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKC  188 (355)
T ss_pred             CCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcc
Confidence               78999998863  4567888899999999999999999999999999999998877543 33455799999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhh-----------------hhcCCCCCHHhHHHHHccccc------HHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQ-----------------NAEGSGLAPFDCWICLRGVKT------MALRVEKQQ  258 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~  258 (301)
                      ++|++|  .|+++.+++.+ +.+....                 .....+.+.....++..+++.      +.+..++..
T Consensus       189 l~~~~G--~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  265 (355)
T TIGR03301       189 LEGVPG--FGFVIARRDLL-EASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYR  265 (355)
T ss_pred             cccCCc--eeEEEECHHHH-HHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            878877  48998886543 3332100                 001123344443443333332      455566778


Q ss_pred             HHHHHHHHHHHhC
Q 022194          259 DNAQKIAEFLASH  271 (301)
Q Consensus       259 ~~~~~l~~~l~~~  271 (301)
                      ++++++.+.|+++
T Consensus       266 ~~~~~~~~~L~~~  278 (355)
T TIGR03301       266 RNRELLVDGLRAL  278 (355)
T ss_pred             HHHHHHHHHHHHc
Confidence            8888888888775

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.85  E-value=1.4e-19  Score=162.47  Aligned_cols=214  Identities=20%  Similarity=0.191  Sum_probs=152.6

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHHHHHhccC----------CC-CeEEEcCCCCccHHHHHhhh---------
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLG----------TG-EEIVAGDDLYGGTDRLLSRV---------  113 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~~~~----------~g-~~Vlv~~~~y~~~~~~~~~~---------  113 (301)
                      .+...++++.++++++.+.+++++||++|+.+++.++.          +| ++|++....||+.......+         
T Consensus        82 ~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~  161 (401)
T PRK00854         82 NDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGG  161 (401)
T ss_pred             CHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcccccc
Confidence            45688999999999998899999999999864444331          23 68998888888864322111         


Q ss_pred             cccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CccccC---
Q 022194          114 TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR---  185 (301)
Q Consensus       114 ~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~-~~~~~~---  185 (301)
                      .......+..++..|++++++.+.+++++|++++++||+|.+.|    +++|+++|++||+++|+||+|+ .+..+.   
T Consensus       162 ~~~~~~~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~  241 (401)
T PRK00854        162 FGPFTPGFRVVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLA  241 (401)
T ss_pred             CCCCCCCeEEeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhH
Confidence            11112345666777999999999889999999999999999986    9999999999999999999997 222211   


Q ss_pred             --ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHH
Q 022194          186 --PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNA  261 (301)
Q Consensus       186 --~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~  261 (301)
                        ......|+++  ++|++++ +.+++|+++++++ +.+.+.........+.++..++++...++.+.+  ..++..++.
T Consensus       242 ~~~~g~~~D~~~--~~K~l~g-g~~~ig~v~~~~~-~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~  317 (401)
T PRK00854        242 EEHEGIEADVTL--IGKALSG-GFYPVSAVLSNSE-VLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMG  317 (401)
T ss_pred             HhhcCCCCCEEE--ecccccC-CccCeEEEEEcHH-HHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence              1122357776  4699965 3357888988754 444333222333344577777777777776543  557777777


Q ss_pred             HHHHHHHHhC
Q 022194          262 QKIAEFLASH  271 (301)
Q Consensus       262 ~~l~~~l~~~  271 (301)
                      +++.+.|++.
T Consensus       318 ~~l~~~L~~~  327 (401)
T PRK00854        318 AYFLEGLRSI  327 (401)
T ss_pred             HHHHHHHHhh
Confidence            8888888774

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.85  E-value=2.2e-20  Score=160.97  Aligned_cols=158  Identities=22%  Similarity=0.211  Sum_probs=133.3

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEecchHHHHHHH-Hhc-cCCCC----eEEEcCCCCccHHHHHhhhcccCCcEEEEecCC
Q 022194           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAV-THL-LGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~~~-~~~-~~~g~----~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~  127 (301)
                      ..++.++.++++++++  +++++.++|++++++ ... ...+|    +|++..-.|++....+ ...+..|+++++++..
T Consensus        86 ~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~-~~l~~~g~~Vt~lpv~  164 (428)
T KOG1549|consen   86 AVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSC-RALQEEGLEVTYLPVE  164 (428)
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHH-HHHHhcCeEEEEeccC
Confidence            3788999999999987  544444447998744 443 22344    8999999999888776 5667778999999975


Q ss_pred             -----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccc
Q 022194          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (301)
Q Consensus       128 -----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~  201 (301)
                           |.+.+++.++++|++|.+.+.+|.+|.++|++||.++|+++++.+++|.+++.|... +..+.++|++..|.||+
T Consensus       165 ~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~  244 (428)
T KOG1549|consen  165 DSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKI  244 (428)
T ss_pred             ccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccc
Confidence                 789999999999999999999999999999999999999999999999999999876 67788999999999999


Q ss_pred             ccCCCCceeeEEEEcc
Q 022194          202 IAGHSDVMAGVLAVKG  217 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~  217 (301)
                      | ||+|  .|++++++
T Consensus       245 y-gp~~--iGaLYvr~  257 (428)
T KOG1549|consen  245 Y-GPPG--IGALYVRR  257 (428)
T ss_pred             c-CCCc--ceEEEEcc
Confidence            9 6776  58888885

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.84  E-value=4.9e-19  Score=158.08  Aligned_cols=211  Identities=18%  Similarity=0.164  Sum_probs=150.6

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-----
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----  126 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-----  126 (301)
                      +.+...+|++.+++++|.++++++.+|++|+. ++..+++|||.| +++|.|..+.    ..+...|..++.++.     
T Consensus        51 ~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~----~~i~~~Ga~pv~v~i~~~~~  125 (431)
T cd00617          51 GSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTR----GHIEANGAVPVDLVIDEAHD  125 (431)
T ss_pred             CCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchH----HHHHhCCCEeEEEecccccc
Confidence            34558899999999999999999999999985 677789999987 6888888775    455567777776654     


Q ss_pred             ----------CCHHHHHhhcCCC----ceEEEEeCCCCCc-ccccc---HHHHHHHHHHcCCEEEEeCCcCCc-------
Q 022194          127 ----------CDLDEVASAIGPW----TKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMSP-------  181 (301)
Q Consensus       127 ----------~d~~~l~~~l~~~----~~~v~i~~~~np~-G~~~~---l~~l~~l~~~~~~~li~D~~~~~~-------  181 (301)
                                .|++++++++.++    +++|+++.|+||+ |...+   +++|.++|++||+++|.|+++...       
T Consensus       126 ~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~  205 (431)
T cd00617         126 AQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKE  205 (431)
T ss_pred             cccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhc
Confidence                      2688999999854    7899999999998 77764   678899999999999999996532       


Q ss_pred             ----cccCcc-------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh-----cCCCCCHHhHHHHHc
Q 022194          182 ----VLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-----EGSGLAPFDCWICLR  245 (301)
Q Consensus       182 ----~~~~~~-------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  245 (301)
                          ......       ....|.+..|++|...++   .+|+++++++.+.++++.....     ...+++.....++..
T Consensus       206 r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~---~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~  282 (431)
T cd00617         206 REEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVN---IGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQ  282 (431)
T ss_pred             ccccccCCCHHHHHHHhhccCCEEEEEeecCCCCc---cceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHH
Confidence                111111       124788899999987654   3689999987777766532211     112334444333332


Q ss_pred             ccccH--HHHHHHHHHHHHHHHHHHHhC
Q 022194          246 GVKTM--ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       246 ~l~~~--~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +++..  .+..++..++++++.+.|++.
T Consensus       283 gL~e~~~~~~l~~~~~~r~~l~~~L~~~  310 (431)
T cd00617         283 GLREAVEEDYLRHRVEQVRYLGDRLDEA  310 (431)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHC
Confidence            43221  234555556678888888875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.84  E-value=1.2e-19  Score=162.60  Aligned_cols=255  Identities=15%  Similarity=0.111  Sum_probs=164.5

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      .+++||.++  +--+|..++.+..+.. .+.+  + ..........+...+++++|+++.+.+.+++++||++|+.+++.
T Consensus        40 ~~~lD~~~g~~~~~lGh~~p~v~~ai~-~~~~--~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk  115 (396)
T PRK04073         40 NRYMDMLSAYSAVNQGHRHPKIIQALK-DQAD--K-VTLTSRAFHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIK  115 (396)
T ss_pred             CEEEEcCCCHHhccCCCCCHHHHHHHH-HHHh--h-ccccccccCCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHHHHH
Confidence            367787522  2236766666554432 2211  1 11111112345578899999999888889999999999864444


Q ss_pred             cc-----------CCCCeEEEcCCCCccHHHHHhhhccc------CC---cEEEEecCCCHHHHHhhcCCCceEEEEeCC
Q 022194           89 LL-----------GTGEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTCDLDEVASAIGPWTKLVWVESP  148 (301)
Q Consensus        89 ~~-----------~~g~~Vlv~~~~y~~~~~~~~~~~~~------~g---~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~  148 (301)
                      +.           ..+++|+..+..||+.......+...      .+   ..+..++..|++++++.+.+++++|+++++
T Consensus       116 ~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~viiep~  195 (396)
T PRK04073        116 AARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAITPNTAAFLVEPI  195 (396)
T ss_pred             HHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCCCHHHHHHhcccCeEEEEEcCc
Confidence            32           12367898888898865322111111      00   123456666899999999888999999999


Q ss_pred             CCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccc-cCc---cCCCCcEEEecccccccCCCCceeeEEEEcchhH
Q 022194          149 TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVL-SRP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (301)
Q Consensus       149 ~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~-~~~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~  220 (301)
                      +||+|.+.+    +++|.++|+++|+++|+||+|..... ...   ...+....+.+++|.++ .++++.|++++++ .+
T Consensus       196 ~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg-~gg~~ig~~~~~~-~i  273 (396)
T PRK04073        196 QGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALG-GGVFPISCVAANR-DI  273 (396)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEeccccc-CCCCcceEEEEcH-HH
Confidence            999999875    89999999999999999999873221 111   11233333455899995 4567889998875 45


Q ss_pred             HHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhC
Q 022194          221 AKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+.+.........+.++..+++++..++.+.  ...++..++.+++.+.|++.
T Consensus       274 ~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~l  326 (396)
T PRK04073        274 LGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEI  326 (396)
T ss_pred             HhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence            5544332333345567777777777776542  33456666677788888764

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.84  E-value=1.2e-19  Score=162.84  Aligned_cols=252  Identities=18%  Similarity=0.188  Sum_probs=166.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~   87 (301)
                      .+++||.++  ++++|. ++|.+......+.+  +..  .++.. ..+...++++.|++..+.+.+++++||++|+.+++
T Consensus        40 ~~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~--~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~  114 (403)
T PRK05093         40 KEYIDFAGGIAVTALGH-CHPALVKALKEQGE--KLW--HISNVFTNEPALRLAKKLIDATFAERVFFANSGAEANEAAF  114 (403)
T ss_pred             CEEEEcCcCHHhccCCC-CCHHHHHHHHHHHH--hcC--cccCccCCHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHH
Confidence            478999744  689999 66655544322211  111  11111 34557799999999888788999999998886444


Q ss_pred             hcc---------CCCCeEEEcCCCCccHHHHHhhh---------cccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCC
Q 022194           88 HLL---------GTGEEIVAGDDLYGGTDRLLSRV---------TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPT  149 (301)
Q Consensus        88 ~~~---------~~g~~Vlv~~~~y~~~~~~~~~~---------~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~  149 (301)
                      .++         ...++|+..+..||+........         .......+..++..|++.+++.+.+++++|+++ |.
T Consensus       115 klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aaiiie-p~  193 (403)
T PRK05093        115 KLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVIDDHTCAVVVE-PI  193 (403)
T ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCHHHHHHHhcCCeEEEEEe-cc
Confidence            433         23467888899999874321111         111123456677779999999998888999999 56


Q ss_pred             CCccccc-c----HHHHHHHHHHcCCEEEEeCCcCCcccc-Cc---cCCCCcEEEecccccccCCCCceeeEEEEcchhH
Q 022194          150 NPRQQIC-D----IRKIAEMAHAHGALLLVDNSIMSPVLS-RP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (301)
Q Consensus       150 np~G~~~-~----l~~l~~l~~~~~~~li~D~~~~~~~~~-~~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~  220 (301)
                      |++|... +    +++|+++|++||+++|+||+|+..... ..   ...+.+..+.|+||.++  +|++.|++++++ .+
T Consensus       194 ~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~--~G~rig~vv~~~-~i  270 (403)
T PRK05093        194 QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALG--GGFPIGAMLTTA-EI  270 (403)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEeccccc--CCcceEEEEEcH-HH
Confidence            6665543 2    999999999999999999998732221 11   12333444678999995  468999999875 45


Q ss_pred             HHHHHHhhhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHhC
Q 022194          221 AKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+.+...........++..++++...++.+  .+..+++.++.+++.+.|+++
T Consensus       271 ~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~  323 (403)
T PRK05093        271 ASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKI  323 (403)
T ss_pred             HhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            454433223334455666666666655443  345577778888888888764

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.84  E-value=1.6e-19  Score=161.63  Aligned_cols=254  Identities=17%  Similarity=0.137  Sum_probs=166.8

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      .+++||.++  ++++|.. +|.+..+...+.+  . .......+..+...++++.|+++++.+.+++++||++|+.+.+.
T Consensus        35 ~~ylD~~~g~~~~~lGh~-~p~v~~a~~~~~~--~-~~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk  110 (397)
T TIGR03246        35 KEYIDFAGGIAVNALGHA-HPELVKALIEQAD--K-LWHIGNGYTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALK  110 (397)
T ss_pred             CEEEECCcCHhhccCCCC-CHHHHHHHHHHHH--h-cccccCccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHH
Confidence            589999744  8999996 5655544322211  1 11111112345688999999999888889999999999864444


Q ss_pred             cc---------CCCCeEEEcCCCCccHHHHHhhhcc---------cCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCC
Q 022194           89 LL---------GTGEEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (301)
Q Consensus        89 ~~---------~~g~~Vlv~~~~y~~~~~~~~~~~~---------~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~n  150 (301)
                      ++         ..+++|+..+..||+.....-....         .....+..++..|++++++.+.+++++|+++.+++
T Consensus       111 ~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epi~~  190 (397)
T TIGR03246       111 LARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISDKTCAVIVEPIQG  190 (397)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHHhccCeEEEEEecccC
Confidence            43         1346788888889987532211111         01123455666799999999988899999997777


Q ss_pred             Cccccc----cHHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHH
Q 022194          151 PRQQIC----DIRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (301)
Q Consensus       151 p~G~~~----~l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~  222 (301)
                      +.|...    .+++|.++|++||+++|+||++... ..+   .....+....+.+++|.++  +|++.|++++++ .+.+
T Consensus       191 ~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~~K~lg--gG~pigav~~~~-~i~~  267 (397)
T TIGR03246       191 EGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALG--GGFPIGAMLTTT-EIAA  267 (397)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEeehhhh--CCcceeEEEEcH-HHHH
Confidence            677553    3999999999999999999998421 111   1122344444557999995  367889998875 4555


Q ss_pred             HHHHhhhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHhC
Q 022194          223 ELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+.......+.+.++..+++++..++.+  .+..++..++.+++.+.|++.
T Consensus       268 ~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l  318 (397)
T TIGR03246       268 HLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKI  318 (397)
T ss_pred             hccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            4432222233445666666666666544  345577777778888877663

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.84  E-value=7e-20  Score=165.14  Aligned_cols=253  Identities=19%  Similarity=0.178  Sum_probs=164.6

Q ss_pred             ceeeecCCCCCC--CCccccCeeecceeecCCCCCCCCccccCC--CCchHHHHHHHHHhhcC--CCceEEecchHHHHH
Q 022194           11 TLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~--~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~   84 (301)
                      ..++||.+++++  +|. ++|.+.........  . . ..|...  ..+...++++.++++++  .+++++++||++|+.
T Consensus        36 ~~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~--~-~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~  110 (413)
T cd00610          36 NRYLDFLSGIGVLNLGH-NHPEVVEALKEQLA--K-L-THFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVE  110 (413)
T ss_pred             CEEEEcCccHHhhccCC-CCHHHHHHHHHHHH--h-C-cCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHH
Confidence            478999866555  665 55655544322211  1 1 122221  23558999999999998  678888899999986


Q ss_pred             HHHhc---cCCCCeEEEcCCCCccHHHHHhhhcc---------cCCcEEEEecCC-----------CHHHHHhhcCC---
Q 022194           85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTC-----------DLDEVASAIGP---  138 (301)
Q Consensus        85 ~~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~---------~~g~~~~~~~~~-----------d~~~l~~~l~~---  138 (301)
                      +++.+   ..++++|++.++.||+..........         .....+..++.+           |++.+++.+++   
T Consensus       111 ~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  190 (413)
T cd00610         111 AALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPE  190 (413)
T ss_pred             HHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCC
Confidence            44443   36789999999999997543322211         122345566665           78889888875   


Q ss_pred             CceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCcc-ccC---ccCCCCcEEEecccccccCCCCcee
Q 022194          139 WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPV-LSR---PLELGADIVMHSATKFIAGHSDVMA  210 (301)
Q Consensus       139 ~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~-~~~---~~~~~~di~~~S~sK~~~g~~g~~~  210 (301)
                      ++++|+++..++++|...+    +++|.++|++||+++|+||+|+... ...   ....+.+..+.|++|++++  |++.
T Consensus       191 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~~--g~~~  268 (413)
T cd00610         191 EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGG--GLPL  268 (413)
T ss_pred             CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeEEEcccccC--cccc
Confidence            5778888877788898876    9999999999999999999987431 111   1122333345688999964  4788


Q ss_pred             eEEEEcchhHHHHH--HHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhC
Q 022194          211 GVLAVKGERLAKEL--YFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       211 g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  271 (301)
                      |+++++ +.+.+.+  .........+.++..+.++...++.+.  +..+++.++.+++.+.|++.
T Consensus       269 g~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~  332 (413)
T cd00610         269 GAVLGR-EEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLREL  332 (413)
T ss_pred             EEEEEc-HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            998886 4555543  222222334556666666655555443  35566677777777777653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.84  E-value=1.1e-20  Score=153.23  Aligned_cols=253  Identities=20%  Similarity=0.221  Sum_probs=175.1

Q ss_pred             CCccceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC--CCch-HHHHHHHHHhhcCCCceEEecchHHHH
Q 022194            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPT-RDALESLLAKLDKADRALCFTSGMAAL   83 (301)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~~~-~~~l~~~l~~~~~~~~~i~~~sG~~ai   83 (301)
                      .+.+..+|+|+ .|||+|++++|.+........+. ...+....++  |... ...|+..++++.+-++.++..+|..|.
T Consensus        63 ~G~~k~ilnFc-aNnYLGLsshPeii~a~~~alee-yGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED~ilypscfdAN  140 (417)
T KOG1359|consen   63 KGSDKKILNFC-ANNYLGLSSHPEIINAGQKALEE-YGAGLSSVRFICGTQDIHKLLESKIAQFHGREDTILYPSCFDAN  140 (417)
T ss_pred             eccccceeeec-ccccccccCChHHHHHHHHHHHH-hCCCccceeEEecchHHHHHHHHHHHHHhCCCceEEeccccccc
Confidence            45677899999 99999999999998764332221 1111122222  5544 789999999999999999999999887


Q ss_pred             H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHH-HHHhhcCCCceEEEEeCCCCCccccccHHHH
Q 022194           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD-EVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (301)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~-~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l  161 (301)
                      . ++.++++|.|.|+-....|-+..... .++++++    .++.-+.+ .+.++.+-+.++|+......+.|.+.|+++|
T Consensus       141 ag~feail~pedAvfSDeLNhASIIdGi-rLckry~----h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei  215 (417)
T KOG1359|consen  141 AGAFEAILTPEDAVFSDELNHASIIDGI-RLCKRYR----HVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEI  215 (417)
T ss_pred             hHHHHHhcChhhhhhccccccchhhhhh-HHHhhhc----cchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHHH
Confidence            4 77778999998888777777766544 4555333    22222222 2233444577888989999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCcCCccccCcc---------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh--hh
Q 022194          162 AEMAHAHGALLLVDNSIMSPVLSRPL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NA  230 (301)
Q Consensus       162 ~~l~~~~~~~li~D~~~~~~~~~~~~---------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~--~~  230 (301)
                      ..++++||.++++||+|+++.++...         .-..|++..+++|+++|.   .+|+..++. .+.+.++...  ..
T Consensus       216 ~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga---~GGyttgp~-~li~llrqr~Rpyl  291 (417)
T KOG1359|consen  216 SQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGA---SGGYTTGPK-PLISLLRQRSRPYL  291 (417)
T ss_pred             HHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCC---CCCCccCCh-hHHHHHHhcCCcee
Confidence            99999999999999999987765211         124689999999999754   468887764 4545444332  23


Q ss_pred             cCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHh
Q 022194          231 EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~  270 (301)
                      +.+.++|.......+.++.+   ...+++...+.+++++.++.
T Consensus       292 FSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~  334 (417)
T KOG1359|consen  292 FSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEA  334 (417)
T ss_pred             ecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            44666665443333333322   34455666777778877764

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.84  E-value=3e-20  Score=163.57  Aligned_cols=193  Identities=19%  Similarity=0.183  Sum_probs=142.3

Q ss_pred             HHHHHHHHHhhcCCC----ceEEecchHHHHH-HHHhccC------------C--CCeEEEcCCCCccHHHHHhhhcccC
Q 022194           57 RDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLG------------T--GEEIVAGDDLYGGTDRLLSRVTPKT  117 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~----~~i~~~sG~~ai~-~~~~~~~------------~--g~~Vlv~~~~y~~~~~~~~~~~~~~  117 (301)
                      ++++.+++++++|.+    +.+++++|++++. ++..+..            +  ++.|+++++.|.++...    +...
T Consensus        40 e~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~----~~~~  115 (345)
T cd06450          40 EAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKA----AAYL  115 (345)
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHH----HHHH
Confidence            777888899998875    5777888888875 4444321            2  34788888898887533    3444


Q ss_pred             CcEEEEecCC-----CHHHHHhhcCC------CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCc
Q 022194          118 GVVVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP  186 (301)
Q Consensus       118 g~~~~~~~~~-----d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~  186 (301)
                      |.+++.++.+     |++++++++.+      ++++|++++++|++|.+.|+++|+++|+++|+++++|++|+.+.....
T Consensus       116 g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~  195 (345)
T cd06450         116 DVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFP  195 (345)
T ss_pred             hcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhCh
Confidence            7777777643     78999999876      788999999999999999999999999999999999999987764321


Q ss_pred             c-------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc--ccHHHHHHHH
Q 022194          187 L-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV--KTMALRVEKQ  257 (301)
Q Consensus       187 ~-------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~  257 (301)
                      .       ..++|++..|+||++++|.|  .|+++.+                    ....++.+..+  ..+.+++++.
T Consensus       196 ~~~~~~~~~~~~d~~~~s~~K~l~~p~g--~g~~~~~--------------------~~~~~~~l~~l~~~g~~~~~~~~  253 (345)
T cd06450         196 EPRHLDFGIERVDSISVDPHKYGLVPLG--CSAVLVR--------------------ALKLWATLRRFGRDGYGEHIDRI  253 (345)
T ss_pred             hhHHHhcCccccCEEEEchhHhhCCCcc--hHHHHHH--------------------HHHHHHHHHHHhHHHHHHHHHHH
Confidence            1       12579999999999877654  4666544                    22223333322  2356677888


Q ss_pred             HHHHHHHHHHHHhCCCcc
Q 022194          258 QDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       258 ~~~~~~l~~~l~~~~~v~  275 (301)
                      .++++++.+.|++++++.
T Consensus       254 ~~~~~~l~~~L~~~~~~~  271 (345)
T cd06450         254 VDLAKYLAELIRADPGFE  271 (345)
T ss_pred             HHHHHHHHHHHhcCCCeE
Confidence            889999999998887654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.83  E-value=3.2e-19  Score=158.92  Aligned_cols=252  Identities=16%  Similarity=0.115  Sum_probs=164.4

Q ss_pred             ceeeecCCCCC---CCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEFD---PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~---~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~   87 (301)
                      .+++||. +++   |+|. ++|.+..+...+-+.   ..........+.+.++.+.+++..+.+.+++++||++|+.+++
T Consensus        29 ~~~lD~~-s~~~~~~lG~-~~p~v~~a~~~~~~~---~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~  103 (377)
T PRK02936         29 KTYLDFT-SGIAVCNLGH-CHPTVTKAVQEQLDD---IWHVSNLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAAL  103 (377)
T ss_pred             CEEEECC-cchhhccCCC-CCHHHHHHHHHHHHh---ccccccccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHH
Confidence            4789998 566   8997 555555432222111   1111111234558888888888877778889999999986444


Q ss_pred             hc---cCCCCeEEEcCCCCccHHHHHhhhcccC---------CcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccc
Q 022194           88 HL---LGTGEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        88 ~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~~---------g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~  155 (301)
                      .+   ...+++|++.++.||+............         ...+..++..|++.+++.+.+++++|+++.++++.|..
T Consensus       104 ~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~  183 (377)
T PRK02936        104 KLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVI  183 (377)
T ss_pred             HHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCCCCc
Confidence            43   2334679999999997643221111110         01234556668999999998889999999999988877


Q ss_pred             cc----HHHHHHHHHHcCCEEEEeCCcCCccc-cCc---cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh
Q 022194          156 CD----IRKIAEMAHAHGALLLVDNSIMSPVL-SRP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (301)
Q Consensus       156 ~~----l~~l~~l~~~~~~~li~D~~~~~~~~-~~~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~  227 (301)
                      .+    +++|.++|++||+++|+||+|..... ..+   ...+.+..+.++||.++  +|++.|++++++ .+.+.+...
T Consensus       184 ~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~--~G~~ig~v~~~~-~~~~~~~~~  260 (377)
T PRK02936        184 PADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLG--NGIPVGAMIGKK-ELGTAFGPG  260 (377)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEccccc--CCCccEEEEEcH-HHHhhccCC
Confidence            42    99999999999999999999863211 111   12233323557999995  467889998874 555544333


Q ss_pred             hhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHh
Q 022194          228 QNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ......+.++..++++...++.+  .+.+++..++.+++++.|++
T Consensus       261 ~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~  305 (377)
T PRK02936        261 SHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQE  305 (377)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            33334456777777777776654  24556777777777777765

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.83  E-value=2.7e-19  Score=160.44  Aligned_cols=253  Identities=16%  Similarity=0.137  Sum_probs=160.2

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      ..++||.++  +.++|.. +|.+........+.   .......+..+.+.++++++++..+.+++++++||++|+.+++.
T Consensus        39 ~~~iD~~~g~~~~~lG~~-~p~v~~a~~~~~~~---~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~  114 (396)
T PRK02627         39 KEYLDFLAGIAVNNLGHC-HPKLVEAIQEQAAK---LIHTSNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIK  114 (396)
T ss_pred             CEEEECCccHHhccCCCC-CHHHHHHHHHHHhh---ccccccccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHH
Confidence            467888633  6678874 34444332222111   11111122356699999999999998888889999999864433


Q ss_pred             -ccCC-------CCeEEEcCCCCccHHHHHhhhccc---------CCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCC
Q 022194           89 -LLGT-------GEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (301)
Q Consensus        89 -~~~~-------g~~Vlv~~~~y~~~~~~~~~~~~~---------~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np  151 (301)
                       +...       .++|++.++.||++..........         ....+..++..|++++++++.+++++|++++++||
T Consensus       115 ~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~  194 (396)
T PRK02627        115 LARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQGE  194 (396)
T ss_pred             HHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEecccCC
Confidence             3222       167999999999875332111100         01123444555899999999888999999999999


Q ss_pred             cccc-c---cHHHHHHHHHHcCCEEEEeCCcCCccc-c---CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          152 RQQI-C---DIRKIAEMAHAHGALLLVDNSIMSPVL-S---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       152 ~G~~-~---~l~~l~~l~~~~~~~li~D~~~~~~~~-~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                      +|.. .   .+++|.++|++||+++|+||+|+.... .   .....+.+..+.++||.++  +|++.|++++++ .+.+.
T Consensus       195 ~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~--~G~rig~~~~~~-~~~~~  271 (396)
T PRK02627        195 GGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLG--GGVPIGAVLAKE-KVADV  271 (396)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhh--CCcccEEEEEcH-HHHhc
Confidence            9843 3   389999999999999999999873211 1   1112233333557999995  468999999875 45554


Q ss_pred             HHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          224 LYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      +.........+.++..++++...++.+.  +..++..++.+++++.|++
T Consensus       272 ~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  320 (396)
T PRK02627        272 FTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRE  320 (396)
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            4333333445567777777666665432  2334555555555555543

>PRK02769 histidine decarboxylase; Provisional

Probab=99.83  E-value=5.6e-19  Score=155.96  Aligned_cols=218  Identities=17%  Similarity=0.211  Sum_probs=153.6

Q ss_pred             HHHHHHHHHhhcCCC--c--eEEecchHHHHH-HHHhc--cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           57 RDALESLLAKLDKAD--R--ALCFTSGMAALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~--~i~~~sG~~ai~-~~~~~--~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .+++.+++++++|.+  +  .+++++||+++. ++...  ..++++|++++-.|++....+    +..|++...++.+  
T Consensus        67 e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~----~~lg~~~~~V~~~~~  142 (380)
T PRK02769         67 ERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIA----RLLRIKSRVITSLPN  142 (380)
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHH----HHcCCCCceeccCCC
Confidence            567888899999875  3  366677788864 33222  456889999999999997554    3334433344432  


Q ss_pred             ---CHHHHHhhcCCC---ceEEEEeCCCCCccccccHHHHHHHHHHcC---CEEEEeCCcCCcccc-------CccCCCC
Q 022194          128 ---DLDEVASAIGPW---TKLVWVESPTNPRQQICDIRKIAEMAHAHG---ALLLVDNSIMSPVLS-------RPLELGA  191 (301)
Q Consensus       128 ---d~~~l~~~l~~~---~~~v~i~~~~np~G~~~~l~~l~~l~~~~~---~~li~D~~~~~~~~~-------~~~~~~~  191 (301)
                         |+++++++++++   +.+|+++.++|++|.+.|+++|+++|+++|   +++++|.+++.+..+       -....++
T Consensus       143 g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~v  222 (380)
T PRK02769        143 GEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGI  222 (380)
T ss_pred             CcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCC
Confidence               889999988765   899999999999999999999999999998   699999999987663       1112389


Q ss_pred             cEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh----h----hcC--CCCCHHhHHHHHccccc--HHHHHHHHHH
Q 022194          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----N----AEG--SGLAPFDCWICLRGVKT--MALRVEKQQD  259 (301)
Q Consensus       192 di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~----~----~~~--~~~~~~~~~~~~~~l~~--~~~~~~~~~~  259 (301)
                      |.++.|.||++++|.|  .|+++.+++.+. .+....    .    ..+  +.......|+.+..+..  +.+..++..+
T Consensus       223 Dsis~s~HK~~~~P~g--~G~l~~r~~~~~-~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~  299 (380)
T PRK02769        223 DSIAISGHKFIGSPMP--CGIVLAKKKYVE-RISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLD  299 (380)
T ss_pred             CEEEECCcccCCCCCC--cEEEEEehhhhh-hcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999977877  588888865432 221100    0    011  12233445555555433  5677788899


Q ss_pred             HHHHHHHHHHhCCCcceEecCCC
Q 022194          260 NAQKIAEFLASHPRVKKVNYAGL  282 (301)
Q Consensus       260 ~~~~l~~~l~~~~~v~~v~~p~~  282 (301)
                      .++++.+.|++. ++..+..|..
T Consensus       300 la~~l~~~L~~~-g~~~~~~p~~  321 (380)
T PRK02769        300 MAQYAVDRLQAN-GIPAWRNPNS  321 (380)
T ss_pred             HHHHHHHHHHhC-CCEEEcCCCc
Confidence            999999999774 4555555544

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.83  E-value=4.3e-19  Score=139.87  Aligned_cols=154  Identities=29%  Similarity=0.335  Sum_probs=124.8

Q ss_pred             HHHHHHHHHhhc--CCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCC-----
Q 022194           57 RDALESLLAKLD--KADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD-----  128 (301)
Q Consensus        57 ~~~l~~~l~~~~--~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d-----  128 (301)
                      .+++++.+++++  +.++++++++|++|+. ++..+.+++++|+++++.|++...   ..+...|.+++.++.++     
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~   78 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW---VAAELAGAKPVPVPVDDAGYGG   78 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh---hHHHhcCCEEEEeccCCCCccc
Confidence            468899999999  7778889998899986 555566779999999999998863   34567788888887641     


Q ss_pred             H--HHHHhhc-CCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC----ccCCCCcEEEeccccc
Q 022194          129 L--DEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----PLELGADIVMHSATKF  201 (301)
Q Consensus       129 ~--~~l~~~l-~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~----~~~~~~di~~~S~sK~  201 (301)
                      .  +.+++.. .++++++++++++|++|...|+++|+++|+++|+++|+|++++.+....    ....++|+++.|++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~  158 (170)
T cd01494          79 LDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKN  158 (170)
T ss_pred             hhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccc
Confidence            1  2444333 4688999999999999999999999999999999999999998776553    5556799999999999


Q ss_pred             ccCCCCceeeEEEEc
Q 022194          202 IAGHSDVMAGVLAVK  216 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~  216 (301)
                      +++ +  +.|+++.+
T Consensus       159 ~~~-~--~~G~l~~~  170 (170)
T cd01494         159 LGG-E--GGGVVIVK  170 (170)
T ss_pred             cCC-C--ceEEEEeC
Confidence            976 3  46888764

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.82  E-value=2.2e-19  Score=157.62  Aligned_cols=208  Identities=22%  Similarity=0.264  Sum_probs=145.6

Q ss_pred             hHHHHHHHHHhhcCCCceEEecchH-HHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------
Q 022194           56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~~~i~~~sG~-~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------  127 (301)
                      ...+.++.+++.||+++..++++|| .++ .++++++++||+|++++++|.++.    ..+...|+.++++++.      
T Consensus        67 ~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~----~alil~ga~Pvyi~p~~~~~gi  142 (417)
T PF01276_consen   67 IIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVY----NALILSGAIPVYIPPEDNEYGI  142 (417)
T ss_dssp             HHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHH----HHHHHHTEEEEEEEEEE-TTS-
T ss_pred             HHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHH----HHHHHcCCeEEEecCCccccCC
Confidence            3889999999999999999999997 666 588899999999999999999887    4556677888887753      


Q ss_pred             ----CH-----HHHHhhcC--CCc---eEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-----CccC
Q 022194          128 ----DL-----DEVASAIG--PWT---KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE  188 (301)
Q Consensus       128 ----d~-----~~l~~~l~--~~~---~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~~~  188 (301)
                          +.     +.++++++  +..   ++|++++|++ .|.+.++++|+++|++++++|++||+|+.-...     ....
T Consensus       143 ~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~  221 (417)
T PF01276_consen  143 IGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALA  221 (417)
T ss_dssp             BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSS
T ss_pred             ccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhh
Confidence                34     78888886  333   4599999999 799999999999999999999999999854322     3445


Q ss_pred             CCCc-------EEEecccccccCCCCceeeEEEEcchh--HHHHHHHhhhhcCCCCCHHhHHH----HHcccc-c-HHHH
Q 022194          189 LGAD-------IVMHSATKFIAGHSDVMAGVLAVKGER--LAKELYFLQNAEGSGLAPFDCWI----CLRGVK-T-MALR  253 (301)
Q Consensus       189 ~~~d-------i~~~S~sK~~~g~~g~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~-~-~~~~  253 (301)
                      .|+|       +++.|.||++++..  +++++..+...  -.+++.........+.+.....+    +.+.++ . =.+.
T Consensus       222 ~gad~~~~~~~~vvqS~HKtL~alt--Qts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l  299 (417)
T PF01276_consen  222 LGADRPNDPGIIVVQSTHKTLPALT--QTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGREL  299 (417)
T ss_dssp             TTSS-CTSBEEEEEEEHHHHSSS-T--T-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHH
T ss_pred             ccCccccccceeeeechhhcccccc--cceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHH
Confidence            6889       99999999997765  58888888764  23444443333333333222211    122221 1 1345


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 022194          254 VEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       254 ~~~~~~~~~~l~~~l~~  270 (301)
                      .++..++++.+++.|++
T Consensus       300 ~~~~i~~a~~~R~~i~~  316 (417)
T PF01276_consen  300 LEEAIELAEEFRKKINR  316 (417)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            57778888889998843

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.82  E-value=7.8e-19  Score=153.86  Aligned_cols=211  Identities=21%  Similarity=0.239  Sum_probs=139.4

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccC-CcEEEEecCC---
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTC---  127 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~-g~~~~~~~~~---  127 (301)
                      .++...+|++.+++++|.+..+++++|++++ ..+..++.+||+|+++.|.|......  ...... +++++.++.+   
T Consensus        32 ~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  109 (333)
T PRK10534         32 DDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYEA--GGAAVLGSIQPQPIDAAADG  109 (333)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhcC--CchHHhcCceEEeecCCCCC
Confidence            3567999999999999999889999998776 46667789999999988777432210  001222 2555655432   


Q ss_pred             --CHHHHHhhcCC------CceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccc---cCc---cCCC
Q 022194          128 --DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL---SRP---LELG  190 (301)
Q Consensus       128 --d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~---~~~---~~~~  190 (301)
                        |++++++++.+      ++++|++++|+  +|.+.+   +++|+++|+++++++++||+|.....   ...   ....
T Consensus       110 ~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~  187 (333)
T PRK10534        110 TLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQY  187 (333)
T ss_pred             CCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhc
Confidence              68999998865      58899999766  599876   45567889999999999999763211   111   0113


Q ss_pred             CcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCC--CHHhHHHHHcccccHHHHHHHHHHHHHHHHHHH
Q 022194          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMALRVEKQQDNAQKIAEFL  268 (301)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l  268 (301)
                      .+.++.||||.++.+   .+|+++++ +.+.+.+.......+...  ....+.+....++...+.+++..++++++.+.|
T Consensus       188 ~~~~~~s~SK~~~~~---~G~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L  263 (333)
T PRK10534        188 CDSFTICLSKGLGTP---VGSLLVGN-RDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAEQL  263 (333)
T ss_pred             CCEEEEEeEcCCCCc---ccceEEcC-HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            465667899998543   24466654 566676665554433222  223344444455543455556666677888888


Q ss_pred             HhC
Q 022194          269 ASH  271 (301)
Q Consensus       269 ~~~  271 (301)
                      +++
T Consensus       264 ~~~  266 (333)
T PRK10534        264 REA  266 (333)
T ss_pred             HhC
Confidence            875

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.82  E-value=7.4e-19  Score=157.74  Aligned_cols=253  Identities=17%  Similarity=0.148  Sum_probs=164.1

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      ..++||.++  +.++|..++. +..+...+..  +... ....+..+...++++.|+++.+.+.+++++||++|+..++.
T Consensus        39 ~~~lD~~~g~~~~~lGh~~p~-v~~A~~~~~~--~~~~-~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk  114 (406)
T PRK12381         39 KEYIDFAGGIAVNALGHAHPA-LREALNEQAS--KFWH-TGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALK  114 (406)
T ss_pred             CEEEEcCcCHhhccCCCCCHH-HHHHHHHHHh--hccc-ccCccCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHH
Confidence            478999743  6799998544 4433222211  1011 11112345578899999998888889999999999864444


Q ss_pred             cc---------CCCCeEEEcCCCCccHHHHHhhhcccC---------CcEEEEecCCCHHHHHhhcCCCceEEEEeCCCC
Q 022194           89 LL---------GTGEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (301)
Q Consensus        89 ~~---------~~g~~Vlv~~~~y~~~~~~~~~~~~~~---------g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~n  150 (301)
                      +.         .++.+|+..+..||+............         -..+..++..|++.+++.+.+++++|+++ |.+
T Consensus       115 ~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aaviiE-Pv~  193 (406)
T PRK12381        115 LARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIVE-PIQ  193 (406)
T ss_pred             HHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEEEEe-CCc
Confidence            32         245789999999999864321111110         01234456668999999998888888886 677


Q ss_pred             Cccccc-----cHHHHHHHHHHcCCEEEEeCCcCCc-cccCc---cCCCCcEEEecccccccCCCCceeeEEEEcchhHH
Q 022194          151 PRQQIC-----DIRKIAEMAHAHGALLLVDNSIMSP-VLSRP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (301)
Q Consensus       151 p~G~~~-----~l~~l~~l~~~~~~~li~D~~~~~~-~~~~~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~  221 (301)
                      ++|.+.     .+++|.++|++||+++|+||+|... ..+..   ...+.+..+.+++|.++  +|++.|++++++ .+.
T Consensus       194 ~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~--gG~~ig~~~~~~-~~~  270 (406)
T PRK12381        194 GEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALG--GGFPIGAMLTTE-KCA  270 (406)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhhhh--CCCceEEEEEcH-HHH
Confidence            777642     3899999999999999999998422 11111   12233344578999995  368899999875 455


Q ss_pred             HHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhC
Q 022194          222 KELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.+...........++..+.++...++.+.  +.++++.++.+++.+.|++.
T Consensus       271 ~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l  322 (406)
T PRK12381        271 SVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTI  322 (406)
T ss_pred             hhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            544333333334557777766666555442  35567777777788877653

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.81  E-value=4.8e-18  Score=151.46  Aligned_cols=209  Identities=15%  Similarity=0.131  Sum_probs=150.1

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecchH-HHHHHHHhccC----CCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC--
Q 022194           57 RDALESLLAKLDKAD---RALCFTSGM-AALAAVTHLLG----TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~sG~-~ai~~~~~~~~----~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~--  126 (301)
                      ..++++++++++|.+   .++++++|| .++.+++..++    +||.|+++...|.+..    +.+...|++++.++.  
T Consensus       107 ~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~----kAi~~~G~~pv~Vd~~~  182 (444)
T TIGR03531       107 TNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCI----KAISTAGFEPRVIETVL  182 (444)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHH----HHHHHcCCeEEEeeeee
Confidence            567888888999988   688899998 57765544444    5899999998887775    667788888888884  


Q ss_pred             C------CHHHHHhhcCC---CceEEEEeCCC-CCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc------CccCCC
Q 022194          127 C------DLDEVASAIGP---WTKLVWVESPT-NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELG  190 (301)
Q Consensus       127 ~------d~~~l~~~l~~---~~~~v~i~~~~-np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~------~~~~~~  190 (301)
                      +      |++++++++.+   +..++++.+|+ ++.|...|+++|+++|++||+|+|+|++|+.+...      .....|
T Consensus       183 d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~G  262 (444)
T TIGR03531       183 DGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVG  262 (444)
T ss_pred             cCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhcccccc
Confidence            1      89999999974   45566666554 45567889999999999999999999999864322      122233


Q ss_pred             -CcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHH--HcccccHHHHHHHHHHHHHHHHHH
Q 022194          191 -ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC--LRGVKTMALRVEKQQDNAQKIAEF  267 (301)
Q Consensus       191 -~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~l~~~  267 (301)
                       +|+++.|+||++..|.+  +|+++.+++.+.+.+...............+++.  ..+.+.+.+.+++..++++++.+.
T Consensus       263 rad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~  340 (444)
T TIGR03531       263 RVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKEL  340 (444)
T ss_pred             CCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence             59999999999976644  6777787777777655432211111112222222  334566788888888888888888


Q ss_pred             HHhC
Q 022194          268 LASH  271 (301)
Q Consensus       268 l~~~  271 (301)
                      |+++
T Consensus       341 L~~l  344 (444)
T TIGR03531       341 LQKL  344 (444)
T ss_pred             HHHH
Confidence            8764

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.81  E-value=1.6e-18  Score=157.80  Aligned_cols=213  Identities=23%  Similarity=0.284  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----C
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----D  128 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----d  128 (301)
                      ..++++++++++|.+  +.+++++|++++. ++.++ .++||+|+++++.|+.+...+...+...|.+++.++.+    |
T Consensus       114 ~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d  193 (447)
T PRK00451        114 IFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTD  193 (447)
T ss_pred             HHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCC
Confidence            445557789999886  3445666677775 44444 47899999999999999877766667788999999875    7


Q ss_pred             HHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEE--eCCcCCccccCccCCCCcEEEeccccc-----
Q 022194          129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV--DNSIMSPVLSRPLELGADIVMHSATKF-----  201 (301)
Q Consensus       129 ~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~--D~~~~~~~~~~~~~~~~di~~~S~sK~-----  201 (301)
                      ++++++++.+++++|++++| |+||.+.|+++|+++||++|+++++  |.. +.+....+.+.++|++++|.+|+     
T Consensus       194 ~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~~~~~~D~~~~s~~k~~~~~~  271 (447)
T PRK00451        194 LEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPPGEYGADIVVGEGQPLGIPLS  271 (447)
T ss_pred             HHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCcccCCCCEEEECCCcCCCCCC
Confidence            89999999989999999998 8899999999999999999999998  544 44554455677999999976664     


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHH-------------------------hhhh--cCCCCC--HH---hHHHHHccc--
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYF-------------------------LQNA--EGSGLA--PF---DCWICLRGV--  247 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~-------------------------~~~~--~~~~~~--~~---~~~~~~~~l--  247 (301)
                      ++||   +.|+++.+++.+ +.+..                         ....  ..+...  ..   .++..+..+  
T Consensus       272 ~~Gp---g~G~l~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~  347 (447)
T PRK00451        272 FGGP---YLGFFATRKKLV-RQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGP  347 (447)
T ss_pred             CCCC---CchHHHhhHHHH-hhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCH
Confidence            4444   468888775433 32100                         0000  111111  11   111112212  


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          248 KTMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      ..+++..+++.++++++.+.|++++++.
T Consensus       348 ~g~~~~~~~~~~~~~~l~~~L~~~~g~~  375 (447)
T PRK00451        348 EGLRELAEQNHQKAHYLAERLAEIGGVE  375 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCEE
Confidence            2356777888999999999999887654

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.81  E-value=5.2e-18  Score=150.85  Aligned_cols=209  Identities=19%  Similarity=0.105  Sum_probs=146.1

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhcc----CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~----~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .+++++++++++|.+  ..+++++|++++. ++..+.    +++++|+++++.|.++.    ..++..|++++.++.+  
T Consensus        61 ~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~~~~  136 (371)
T PRK13520         61 EEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFD----KAADMLGVELRRAPLDDD  136 (371)
T ss_pred             HHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHH----HHHHHcCceEEEecCCCC
Confidence            578999999999976  3567777788875 433332    35789999999988765    4556678888888753  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc--------CccCCCCcEEEe
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADIVMH  196 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~--------~~~~~~~di~~~  196 (301)
                         |++++++++++++++|++.+++|++|.+.|+++|.++|+++|+++++|++|+.+...        .....++|.+..
T Consensus       137 ~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~  216 (371)
T PRK13520        137 YRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITI  216 (371)
T ss_pred             CcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEE
Confidence               799999999888888888888999999999999999999999999999999865421        111246899999


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHHhhhh-c-------CCCCCHHhHHHHHcccc-----cHHHHHHHHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-E-------GSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQK  263 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~  263 (301)
                      |.+|+..+|.  +.|+++.+++.+.+.+...... .       ..+.+......+..+++     .+++++++..+++++
T Consensus       217 s~~K~~~a~~--~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~  294 (371)
T PRK13520        217 DPHKMGLAPI--PAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRW  294 (371)
T ss_pred             CCccccCccC--CceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHH
Confidence            9999864443  3566666555554543211110 0       01112222222222332     245567788888888


Q ss_pred             HHHHHHhC
Q 022194          264 IAEFLASH  271 (301)
Q Consensus       264 l~~~l~~~  271 (301)
                      +.+.|++.
T Consensus       295 l~~~L~~~  302 (371)
T PRK13520        295 LAEELKER  302 (371)
T ss_pred             HHHHHHhC
Confidence            99988875

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.80  E-value=7.2e-19  Score=150.82  Aligned_cols=265  Identities=21%  Similarity=0.229  Sum_probs=183.5

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC-CCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-ADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~-~~~~i~~~sG~~ai~~~~   87 (301)
                      .++|||.++  -.-+|..+|.++.+-. .+.+..-..+..   +-++.+.++.+.|.+..+ .+.+++.+||+||+.+.+
T Consensus        42 ~~YlDf~~Giav~~lGH~hP~iv~al~-~Q~~kl~h~sn~---~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAi  117 (404)
T COG4992          42 REYLDFAAGIAVNNLGHCHPALVEALK-EQAEKLWHVSNL---FYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAAL  117 (404)
T ss_pred             CEeeeeccceeeeccCCCCHHHHHHHH-HHHHHhhhcccc---cCChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHH
Confidence            478888522  2348877666555543 332211111111   235679999999999996 888999999999996544


Q ss_pred             hcc----C-C-CCeEEEcCCCCccHHHH---------HhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCc
Q 022194           88 HLL----G-T-GEEIVAGDDLYGGTDRL---------LSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR  152 (301)
Q Consensus        88 ~~~----~-~-g~~Vlv~~~~y~~~~~~---------~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~  152 (301)
                      .+.    . + ..+|+.....||+-...         +...+.-.--.++.++..|++++++++++++.+|+++..+...
T Consensus       118 KlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~~taAvivEPIQGEg  197 (404)
T COG4992         118 KLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAVIVEPIQGEG  197 (404)
T ss_pred             HHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhccCeEEEEEecccCCC
Confidence            432    2 1 34788888888875311         0111221222566677779999999999999999999999988


Q ss_pred             ccccc----HHHHHHHHHHcCCEEEEeCCcCC----ccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          153 QQICD----IRKIAEMAHAHGALLLVDNSIMS----PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       153 G~~~~----l~~l~~l~~~~~~~li~D~~~~~----~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                      |.+.+    ++++.++|++||+++|.||++..    |.+.....+|....+.++.|.++|  |+..|.++++ +.....+
T Consensus       198 GV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgG--G~PigA~la~-~~~~~~~  274 (404)
T COG4992         198 GVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGG--GFPIGAMLAT-EEIASAF  274 (404)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEeeccccC--CccceeeEEc-hhhhhcC
Confidence            88864    89999999999999999999863    333334455676777779999975  3778888887 5555545


Q ss_pred             HHhhhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHh----CCCcceEecCCC
Q 022194          225 YFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGL  282 (301)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~----~~~v~~v~~p~~  282 (301)
                      ....+.++.+-+|.++++....++.+  +...++..+...++.+.|++    .+.++.|+.-||
T Consensus       275 ~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GL  338 (404)
T COG4992         275 TPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGL  338 (404)
T ss_pred             CCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcCCceeeeeccee
Confidence            55666677778899988888887765  23445556666666666665    344677777776

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.80  E-value=6e-18  Score=150.55  Aligned_cols=210  Identities=16%  Similarity=0.072  Sum_probs=143.0

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhcc------CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL------GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~------~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~  127 (301)
                      .+++++++++++|.+  +.+++++|++++. ++..+.      ++||+|+++++.|.++.    ..++..|++++.++.+
T Consensus        61 ~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~----~~~~~~G~~~~~v~~~  136 (373)
T TIGR03812        61 EEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFE----KAAEMLGLELRYAPLD  136 (373)
T ss_pred             HHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHH----HHHHHcCCeEEEEeeC
Confidence            688999999999986  4567777787764 333332      46789999999998765    5566778888888753


Q ss_pred             -----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-----------CccCCCC
Q 022194          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----------RPLELGA  191 (301)
Q Consensus       128 -----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-----------~~~~~~~  191 (301)
                           |++++++++.+++..+++..++||+|.+.|+++|.++|+++|+++|+|++|+.+...           +....+.
T Consensus       137 ~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~  216 (373)
T TIGR03812       137 EDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGV  216 (373)
T ss_pred             CCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCC
Confidence                 799999998877655555558899999999999999999999999999999754321           1112367


Q ss_pred             cEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh-cC-------CCCCHHhHHHHHccccc-----HHHHHHHHH
Q 022194          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EG-------SGLAPFDCWICLRGVKT-----MALRVEKQQ  258 (301)
Q Consensus       192 di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~l~~-----~~~~~~~~~  258 (301)
                      |.+..|.||+..+|.  +.|+++..++.+.+.+...... ..       .+.+......+...++.     +++..++..
T Consensus       217 d~~~~s~~K~~~~~~--~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~  294 (373)
T TIGR03812       217 QSITIDPHKMGLSPI--PAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECM  294 (373)
T ss_pred             CEEEECccccCCCcC--CceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            899999999654443  3454544444554443211111 01       11222223333333332     345678888


Q ss_pred             HHHHHHHHHHHhCC
Q 022194          259 DNAQKIAEFLASHP  272 (301)
Q Consensus       259 ~~~~~l~~~l~~~~  272 (301)
                      ++++++++.|++++
T Consensus       295 ~~~~~l~~~L~~~g  308 (373)
T TIGR03812       295 ENTRYLVEELKKIG  308 (373)
T ss_pred             HHHHHHHHHHHhCC
Confidence            88999999998864

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.80  E-value=4.1e-18  Score=155.60  Aligned_cols=161  Identities=24%  Similarity=0.345  Sum_probs=124.7

Q ss_pred             CCch-HHHHHHHHHhhcCCCceEEe-cchHHH-HHH---HH-hccCCCC----eEEEcCCCCccHHHHHhhhcccCCcEE
Q 022194           53 GNPT-RDALESLLAKLDKADRALCF-TSGMAA-LAA---VT-HLLGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (301)
Q Consensus        53 g~~~-~~~l~~~l~~~~~~~~~i~~-~sG~~a-i~~---~~-~~~~~g~----~Vlv~~~~y~~~~~~~~~~~~~~g~~~  121 (301)
                      |... +.++++++++++|.+++.+. ++|+.+ +.+   +. .++++||    +|+++++.|+.+..    .++..|+++
T Consensus       110 G~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~----~~~~~G~~v  185 (481)
T PRK04366        110 GALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPA----SAAMAGFKV  185 (481)
T ss_pred             HHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHH----HHHHcCCEE
Confidence            4434 88899999999999865555 556533 332   22 2356666    99999999998874    456688899


Q ss_pred             EEecCC-----CHHHHHhhcCCCceEEEEeCCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCccc--cCccCCCCcE
Q 022194          122 KRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADI  193 (301)
Q Consensus       122 ~~~~~~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~-~~l~~l~~l~~~~~~~li~D~~~~~~~~--~~~~~~~~di  193 (301)
                      +.++.+     |++++++++.+++++|++++|+ ++|.+ .|+++|+++|+++|+++++|+++..+..  ..+.+.|+|+
T Consensus       186 v~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~  264 (481)
T PRK04366        186 VEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDV  264 (481)
T ss_pred             EEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCE
Confidence            888763     7899999999899999999988 89987 5899999999999999999999874422  2567789999


Q ss_pred             EEecccccccCCCCc---eeeEEEEcch
Q 022194          194 VMHSATKFIAGHSDV---MAGVLAVKGE  218 (301)
Q Consensus       194 ~~~S~sK~~~g~~g~---~~g~~~~~~~  218 (301)
                      +++|.||+|++|.|.   -.|+++++++
T Consensus       265 ~~~~~hK~l~~P~g~Ggp~~G~l~~~~~  292 (481)
T PRK04366        265 VHLNLHKTFSTPHGGGGPGSGPVGVKEE  292 (481)
T ss_pred             EEEechhhcCCCCCCCCCCeeeeeehhh
Confidence            999999999766322   3578877754

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.79  E-value=1.4e-17  Score=140.20  Aligned_cols=216  Identities=24%  Similarity=0.314  Sum_probs=143.1

Q ss_pred             chHHHHHHHHHhhcCCCceEE---ecchHHHHH-HHHhccCCCCeEE-EcCCCCccHHHHH------hhhcccCCcEEEE
Q 022194           55 PTRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIV-AGDDLYGGTDRLL------SRVTPKTGVVVKR  123 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~---~~sG~~ai~-~~~~~~~~g~~Vl-v~~~~y~~~~~~~------~~~~~~~g~~~~~  123 (301)
                      ..|+.|++-+++.|+++++++   +.|||+||+ ++..+++|||+++ +...-|.....++      ...++.+|+.+..
T Consensus        54 ~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~  133 (403)
T PF06838_consen   54 IGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYRE  133 (403)
T ss_dssp             HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE
T ss_pred             ccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEE
Confidence            349999999999999999998   589999996 8889999999988 4556787776555      2456788999999


Q ss_pred             ecCC-----CHHHHHhhcCCCceEEEEeC-C---CCCccccccHHHHHHHHHHc--CCEEEEeCCcCCccc-cCccCCCC
Q 022194          124 VNTC-----DLDEVASAIGPWTKLVWVES-P---TNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVL-SRPLELGA  191 (301)
Q Consensus       124 ~~~~-----d~~~l~~~l~~~~~~v~i~~-~---~np~G~~~~l~~l~~l~~~~--~~~li~D~~~~~~~~-~~~~~~~~  191 (301)
                      +++.     |.+.+++++++++++|+++- .   ..|+-.+.+++++++++|+.  +++++||+||+..+. ..|.+.|+
T Consensus       134 v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGA  213 (403)
T PF06838_consen  134 VPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGA  213 (403)
T ss_dssp             --B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-
T ss_pred             EeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCccccch
Confidence            9975     89999999999999999972 2   33444556788888888875  689999999998875 47889999


Q ss_pred             cEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcC----CCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHH
Q 022194          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG----SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF  267 (301)
Q Consensus       192 di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  267 (301)
                      |++.+|+-|..||.-..-+|+++++. ++.++.....+..|    .+.+......+.+++-.....+.+..+-+......
T Consensus       214 Dl~aGSLIKNpGGgiAptGGYIaGr~-~lVe~~a~RLTaPGiG~e~G~t~~~~R~~~QGlFlAP~vV~eAlKgaif~A~~  292 (403)
T PF06838_consen  214 DLMAGSLIKNPGGGIAPTGGYIAGRK-DLVERAAYRLTAPGIGKEVGATLGTNRLMFQGLFLAPHVVGEALKGAIFAAAL  292 (403)
T ss_dssp             SEEEEETTSGGGTTT-SS-EEEEESH-HHHHHHHHHHS-TTTGGGSS--TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hheeccceeCCCCCccCcCCEEechH-HHHHHHHhhhcCCccccccccCcchHHHHHhHHhhchHHHHHHHHHHHHHHHH
Confidence            99999999999876554578998885 55565544444333    22333334455555544455555556666555556


Q ss_pred             HHhC
Q 022194          268 LASH  271 (301)
Q Consensus       268 l~~~  271 (301)
                      ++++
T Consensus       293 fe~l  296 (403)
T PF06838_consen  293 FEKL  296 (403)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            6554

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.79  E-value=5.3e-18  Score=152.30  Aligned_cols=251  Identities=15%  Similarity=0.129  Sum_probs=156.2

Q ss_pred             ceeeecCCCCCCCCcc---ccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEFDPYGAL---STPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~---~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~   87 (301)
                      ..++||.+  +|.+..   ++|.+......+.+   ...+....+..+..+++++.++++++.+.+++++||++|+..++
T Consensus        31 ~~~lD~~~--~~~~~~~Gh~~p~v~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al  105 (400)
T PTZ00125         31 KKYYDFLS--AYSAVNQGHCHPKILAALINQAQ---KLTLTSRAFYNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETAL  105 (400)
T ss_pred             CEEEEccc--CHhhccCCcCCHHHHHHHHHHHH---hcccccccccCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHH
Confidence            46888873  454443   45555544322211   11111111123558889999999998888999999999886443


Q ss_pred             hcc-----------CCCCeEEEcCCCCccHHHHHhhhccc---------CCcEEEEecCCCHHHHHhhcC-CCceEEEEe
Q 022194           88 HLL-----------GTGEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIG-PWTKLVWVE  146 (301)
Q Consensus        88 ~~~-----------~~g~~Vlv~~~~y~~~~~~~~~~~~~---------~g~~~~~~~~~d~~~l~~~l~-~~~~~v~i~  146 (301)
                      .++           ..+++|+..+..||+.....-.....         ....+..++..|++++++.+. +++++|+++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~e  185 (400)
T PTZ00125        106 KFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVE  185 (400)
T ss_pred             HHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEc
Confidence            332           13578999999998875332111111         001234455568999999996 679999999


Q ss_pred             CCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-ccccC---ccCCC--CcEEEecccccccCCCCceeeEEEEc
Q 022194          147 SPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR---PLELG--ADIVMHSATKFIAGHSDVMAGVLAVK  216 (301)
Q Consensus       147 ~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~~---~~~~~--~di~~~S~sK~~~g~~g~~~g~~~~~  216 (301)
                      +++||+|.+.+    +++|.++|++||+++|+||+|+. +....   ....+  .|++  +++|++++ ++.+.|+++++
T Consensus       186 p~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~--~~sK~l~~-g~~~ig~v~~~  262 (400)
T PTZ00125        186 PIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIV--LLGKALSG-GLYPISAVLAN  262 (400)
T ss_pred             CccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEE--EEcccccC-CCcCcEEEEEc
Confidence            99999999987    99999999999999999999863 21111   11123  3554  47899954 33468898887


Q ss_pred             chhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          217 GERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      ++ +.+.+.........+.++..+.++...++.+.  ...++..+..+.+++.|++
T Consensus       263 ~~-~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~  317 (400)
T PTZ00125        263 DD-VMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKE  317 (400)
T ss_pred             HH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            54 44543332223334456666666655555432  2334444555566666654

>PLN03032 serine decarboxylase; Provisional

Probab=99.79  E-value=7.8e-18  Score=147.75  Aligned_cols=217  Identities=16%  Similarity=0.150  Sum_probs=152.3

Q ss_pred             HHHHHHHHHhhcCCC--ce--EEecchHHHHH-HHHhc--cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           57 RDALESLLAKLDKAD--RA--LCFTSGMAALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~--i~~~sG~~ai~-~~~~~--~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .+++.+++++++|.+  +.  +++++||+++. ++...  ..++..|+++.-.|+++.+.    ++..+..++.++.+  
T Consensus        68 e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~ka----a~~lg~~~~~V~~d~~  143 (374)
T PLN03032         68 EVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMEAVKVPTLPS  143 (374)
T ss_pred             HHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHH----HHHcCCCCeEeeeCCC
Confidence            678889999999875  33  77888898874 44332  23456899999999988744    44444555555543  


Q ss_pred             ---CHHHHHhhcCC---CceEEEEeCCCCCccccccHHHHHHHHHHcC-----CEEEEeCCcCCccccC-------ccCC
Q 022194          128 ---DLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAEMAHAHG-----ALLLVDNSIMSPVLSR-------PLEL  189 (301)
Q Consensus       128 ---d~~~l~~~l~~---~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~-----~~li~D~~~~~~~~~~-------~~~~  189 (301)
                         |++++++++++   ++.+|+++..+|++|.+.|+++|+++|+++|     +|+++|.+++.+..+-       ....
T Consensus       144 g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~  223 (374)
T PLN03032        144 GEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRK  223 (374)
T ss_pred             CcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCc
Confidence               89999999975   5778888999999999999999999999996     5999999998765431       1223


Q ss_pred             CCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh--------hcC--CCCCHHhHHHHHcc--cccHHHHHHHH
Q 022194          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--------AEG--SGLAPFDCWICLRG--VKTMALRVEKQ  257 (301)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~--l~~~~~~~~~~  257 (301)
                      ++|.++.|.||+++.|.|  .|+++.+++.+ +.+.....        ..+  .+......|+.+..  .+.+.+..++.
T Consensus       224 ~vDSis~s~HK~~g~P~g--~G~ll~r~~~~-~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~  300 (374)
T PLN03032        224 PIGSVSVSGHKFLGCPMP--CGVALTRKKHV-KALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHC  300 (374)
T ss_pred             CCcEEEECcccccCCCcC--eEEEEEEchhh-HhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            689999999999866877  58888886443 32211000        011  11223445555443  34578888999


Q ss_pred             HHHHHHHHHHHHhCCCcceEecCC
Q 022194          258 QDNAQKIAEFLASHPRVKKVNYAG  281 (301)
Q Consensus       258 ~~~~~~l~~~l~~~~~v~~v~~p~  281 (301)
                      .++++++.+.|++. ++..+..|.
T Consensus       301 ~~~a~~l~~~l~~~-~~~~~~~p~  323 (374)
T PLN03032        301 MRNAHYLKDRLTEA-GLTCRLNEL  323 (374)
T ss_pred             HHHHHHHHHHHHhC-CCcEEECCC
Confidence            99999999999885 344444443

>TIGR01814 kynureninase kynureninase

Probab=99.78  E-value=1.6e-17  Score=149.34  Aligned_cols=149  Identities=16%  Similarity=0.226  Sum_probs=113.5

Q ss_pred             hhcCCC--ceEEecchHHHHHH-HHhccCCC---CeEEEcCCCCccHHHHHhhhcccCCcEE----EEecCC-----CHH
Q 022194           66 KLDKAD--RALCFTSGMAALAA-VTHLLGTG---EEIVAGDDLYGGTDRLLSRVTPKTGVVV----KRVNTC-----DLD  130 (301)
Q Consensus        66 ~~~~~~--~~i~~~sG~~ai~~-~~~~~~~g---~~Vlv~~~~y~~~~~~~~~~~~~~g~~~----~~~~~~-----d~~  130 (301)
                      +++|++  +.++++++|++++. +..+++++   +.|++++..|++....|...++..|+++    +.++.+     +++
T Consensus        80 ~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~  159 (406)
T TIGR01814        80 RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLE  159 (406)
T ss_pred             cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHH
Confidence            778865  45555556788874 45556654   3688888999987665655556667776    445432     677


Q ss_pred             HHHhhc---CCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccCCC
Q 022194          131 EVASAI---GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHS  206 (301)
Q Consensus       131 ~l~~~l---~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g~~  206 (301)
                      ++++.+   .+++++|++++++|.+|.+.|+++|+++||++|+++++|++++.|..+ +....++|++++|.||++.||+
T Consensus       160 ~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~p  239 (406)
T TIGR01814       160 DILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGP  239 (406)
T ss_pred             HHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCC
Confidence            887776   368999999999999999999999999999999999999999999865 3446789999999999997766


Q ss_pred             CceeeEEEEc
Q 022194          207 DVMAGVLAVK  216 (301)
Q Consensus       207 g~~~g~~~~~  216 (301)
                      |  +++++.+
T Consensus       240 G--~~l~v~~  247 (406)
T TIGR01814       240 G--AGAFVHE  247 (406)
T ss_pred             C--eEEEEeh
Confidence            5  4434333

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.77  E-value=1.6e-17  Score=148.05  Aligned_cols=252  Identities=18%  Similarity=0.124  Sum_probs=160.4

Q ss_pred             ceeeecCC--CCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~--~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      .+++||.+  .++++|..+ |.+..+...+.+.   .........++...++.+.+.+..+.+.+++++||++|+.+++.
T Consensus        36 ~~~lD~~sg~~~~~lGh~~-p~v~~a~~~q~~~---~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik  111 (395)
T PRK03715         36 KRYLDFIQGWAVNCLGHCN-PGMVEALAAQAEK---LINPSPAFYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIK  111 (395)
T ss_pred             CEEEECCcChhhccCCCCC-HHHHHHHHHHHHh---cccccccccCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHH
Confidence            48899974  488999996 4444433222111   11111112334567788888877666789999999999864444


Q ss_pred             ccC-------C-CCeEEEcCCCCccHHHHHhhhcccCC---------cEEEEecCCCHHHHHhhcCCCceEEEEeCCCCC
Q 022194           89 LLG-------T-GEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (301)
Q Consensus        89 ~~~-------~-g~~Vlv~~~~y~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np  151 (301)
                      +++       + .++|+..+..||+.....-.......         ..+...+..|++++++.+.+++++|+++...+.
T Consensus       112 ~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epv~~~  191 (395)
T PRK03715        112 LARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLEPVQGE  191 (395)
T ss_pred             HHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEEeCCcCC
Confidence            332       2 36788889999987533212111110         112223345889999999888999999988888


Q ss_pred             cccccc----HHHHHHHHHHcCCEEEEeCCcCC-ccccC---ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          152 RQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       152 ~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~~---~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                      .|...+    +++|.++|++||+++|+||+++. |..+.   ....+....+.+++|.+++  |+..|.++++++. .. 
T Consensus       192 gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK~lg~--G~p~~av~~~~~i-~~-  267 (395)
T PRK03715        192 GGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGG--GVPLAALLAKAEV-AV-  267 (395)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeehhhhhC--CcceEEEEEcccc-cc-
Confidence            888876    99999999999999999999873 11221   1223333345668999975  3557777777553 22 


Q ss_pred             HHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          224 LYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      ........+...++..+++++..++.+.  +..++..++.+++++.|++
T Consensus       268 ~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~  316 (395)
T PRK03715        268 FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLE  316 (395)
T ss_pred             ccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            1111122333456777777777777653  3556777777778777764

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.77  E-value=3e-17  Score=147.02  Aligned_cols=215  Identities=16%  Similarity=0.090  Sum_probs=149.9

Q ss_pred             HHHHHHHHHhhcCCC----ceEE--ecchHHHHH-HHHhcc--------CC-----CCeEEEcCCCCccHHHHHhhhccc
Q 022194           57 RDALESLLAKLDKAD----RALC--FTSGMAALA-AVTHLL--------GT-----GEEIVAGDDLYGGTDRLLSRVTPK  116 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~----~~i~--~~sG~~ai~-~~~~~~--------~~-----g~~Vlv~~~~y~~~~~~~~~~~~~  116 (301)
                      .+++++++++++|.+    +..+  +++||+|+. ++....        +.     +..|++++-.|.++.    +.++.
T Consensus        82 e~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~----ka~~~  157 (431)
T TIGR01788        82 ENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWE----KFARY  157 (431)
T ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHH----HHHHH
Confidence            777889999999876    3443  467788874 443321        11     236889999998886    44455


Q ss_pred             CCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc------CCEEEEeCCcCCccc-
Q 022194          117 TGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH------GALLLVDNSIMSPVL-  183 (301)
Q Consensus       117 ~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~------~~~li~D~~~~~~~~-  183 (301)
                      .|++++.++.+      |++++++++++++.+|+++..+|.+|.+.|+++|+++|+++      |+|+++|.+++.+.. 
T Consensus       158 lg~~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p  237 (431)
T TIGR01788       158 FDVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAP  237 (431)
T ss_pred             cCceeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHH
Confidence            67777776653      78899999998999999999999999999999999999999      999999999984432 


Q ss_pred             ------c-CccCCCCcEEEecccccccCCCCceeeEEEEcchh-HHHHHHH----hhhhc---C--CCC---CHHhHHHH
Q 022194          184 ------S-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYF----LQNAE---G--SGL---APFDCWIC  243 (301)
Q Consensus       184 ------~-~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~-~~~~~~~----~~~~~---~--~~~---~~~~~~~~  243 (301)
                            . +....++|.+..|.||++.+|.|  .|+++.+++. +...+..    .....   +  .+-   .....|..
T Consensus       238 ~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~  315 (431)
T TIGR01788       238 FVYPDLEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYN  315 (431)
T ss_pred             HhCCCchhhcCCCCceEEEECchhccCCCCC--cEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHH
Confidence                  1 12234789999999999878887  4888877653 2222110    00000   0  000   11223444


Q ss_pred             Hccc--ccHHHHHHHHHHHHHHHHHHHHhCCCcceE
Q 022194          244 LRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKV  277 (301)
Q Consensus       244 ~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v  277 (301)
                      +..+  .-+++..++..++++++.+.|++.+.++.+
T Consensus       316 l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~  351 (431)
T TIGR01788       316 FLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEII  351 (431)
T ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEe
Confidence            3333  235777788999999999999988766443

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PLN02271 serine hydroxymethyltransferase

Probab=99.76  E-value=1.6e-16  Score=142.80  Aligned_cols=230  Identities=20%  Similarity=0.243  Sum_probs=151.8

Q ss_pred             CCchHHHHH----HHHHhhcCCCc-----eEEecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHHh-----hhcccC
Q 022194           53 GNPTRDALE----SLLAKLDKADR-----ALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS-----RVTPKT  117 (301)
Q Consensus        53 g~~~~~~l~----~~l~~~~~~~~-----~i~~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~-----~~~~~~  117 (301)
                      |....++++    ++..++|+++.     .+-.-||+.|. .++.++++|||+|+..+..|+++.....     ..+...
T Consensus       188 G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~s  267 (586)
T PLN02271        188 GNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGA  267 (586)
T ss_pred             CChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccc
Confidence            444455554    55667788653     23445898776 5778899999999999998888864321     122344


Q ss_pred             CcEEEEec--CC------CHHHHHh-hcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc----
Q 022194          118 GVVVKRVN--TC------DLDEVAS-AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (301)
Q Consensus       118 g~~~~~~~--~~------d~~~l~~-~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~----  184 (301)
                      |+.+..++  .+      |.+++++ +...++++|++....+|  ...|+++++++|+++|+++++|.+|..|...    
T Consensus       268 G~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~  345 (586)
T PLN02271        268 SIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKEC  345 (586)
T ss_pred             cceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcC
Confidence            55544444  32      8899998 55689999999888887  6789999999999999999999999877653    


Q ss_pred             -CccCCCCcEEEecccccccCCCCceeeEEEEcch-------------------hHHHHHHHhhh--hcCCCCCHHhHHH
Q 022194          185 -RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-------------------RLAKELYFLQN--AEGSGLAPFDCWI  242 (301)
Q Consensus       185 -~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~-------------------~~~~~~~~~~~--~~~~~~~~~~~~~  242 (301)
                       .+.. ++|++++|.||++.||.   +|+++.+++                   .+.+++.....  ..+.... ...++
T Consensus       346 ~sP~~-~aDvvt~TTHKtLrGPr---GG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn-~~IAa  420 (586)
T PLN02271        346 VNPFD-YCDIVTSTTHKSLRGPR---GGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHN-NHIAA  420 (586)
T ss_pred             CCCCc-CCcEEEeCCcccCCCCC---ceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhH-HHHHH
Confidence             3444 59999999999999885   577777643                   12222211111  1111111 11112


Q ss_pred             H---Hc--ccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhh
Q 022194          243 C---LR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  294 (301)
Q Consensus       243 ~---~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~  294 (301)
                      .   ++  ....+.++.++..+|++.|.+.|.+. ++..+.    ..+-+|.+++..
T Consensus       421 lAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~----ggTdnHlvLvDl  472 (586)
T PLN02271        421 LAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVT----GGTDNHLLLWDL  472 (586)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEee----CCCCcceeeecC
Confidence            1   11  23346788899999999999999876 333332    223345555444

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.76  E-value=7.3e-17  Score=144.23  Aligned_cols=206  Identities=19%  Similarity=0.157  Sum_probs=138.8

Q ss_pred             HHHHHhhcCCCce-EEecchHHHH-HHHHhccCC-------------------------------CCeEEEcCCCCccHH
Q 022194           61 ESLLAKLDKADRA-LCFTSGMAAL-AAVTHLLGT-------------------------------GEEIVAGDDLYGGTD  107 (301)
Q Consensus        61 ~~~l~~~~~~~~~-i~~~sG~~ai-~~~~~~~~~-------------------------------g~~Vlv~~~~y~~~~  107 (301)
                      .+++.++|+++.+ +=.-||+.|. .++.++++|                               ||+|+..++.++++.
T Consensus       101 ~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHl  180 (493)
T PRK13580        101 AEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHL  180 (493)
T ss_pred             HHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCee
Confidence            3566678998853 3356788776 577778876                               799998877665553


Q ss_pred             HHH-hhhcccCCcEEEEecC------CCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCC
Q 022194          108 RLL-SRVTPKTGVVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS  180 (301)
Q Consensus       108 ~~~-~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~  180 (301)
                      ..- ...+......+.....      .|.+++++.+++.++.|++++.+|- +...|+++|.++|+++|+++++|++|+.
T Consensus       181 thg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~  259 (493)
T PRK13580        181 THGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFA  259 (493)
T ss_pred             ecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhh
Confidence            110 0000000122222222      2889999999988888888888886 5578999999999999999999999998


Q ss_pred             ccccCcc-------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh-hhhcCCCCCHHhHHHHHcccc----
Q 022194          181 PVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNAEGSGLAPFDCWICLRGVK----  248 (301)
Q Consensus       181 ~~~~~~~-------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~----  248 (301)
                      |.+....       ..++|++++|+||++.||   ++|++++++ .+.+.+... ....++..++..++.+....+    
T Consensus       260 Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP---~GG~I~~~~-~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~  335 (493)
T PRK13580        260 GLVAGKVFTGDEDPVPHADIVTTTTHKTLRGP---RGGLVLAKK-EYADAVDKGCPLVLGGPLPHVMAAKAVALAEARTP  335 (493)
T ss_pred             ceeccccchhhcCCCCCCcEEEeCChhhccCC---CeEEEEecH-HHHHHHhhCCCcccCCCccHHHHHHHHHHHHHhCc
Confidence            7764111       236899999999999776   468888875 454544222 223334445543333322111    


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          249 TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ...++++++.+|+++|++.|++.
T Consensus       336 ef~~y~~~l~~Na~~La~~L~~~  358 (493)
T PRK13580        336 EFQKYAQQVVDNARALAEGFLKR  358 (493)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhc
Confidence            23557899999999999999874

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.75  E-value=2e-16  Score=139.52  Aligned_cols=211  Identities=18%  Similarity=0.169  Sum_probs=150.3

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHHHHH-HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~-~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      |+++..++++.+++++|.+.++.+++|+.|+..+ ...++|||.|  +.+.|.....   ......|..+..++.+    
T Consensus        69 g~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~---ahIe~~Gav~vDi~~dea~~  143 (450)
T TIGR02618        69 GSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTR---YHQEKNGATFVDIIIDEAHD  143 (450)
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHH---HHHHhCCeEEEeeecccccc
Confidence            6788999999999999999999999999997643 4468999977  5566644432   3235566666666221    


Q ss_pred             -----------CHHHHHhhcCC----CceEEEEeCCCCCc-cccc---cHHHHHHHHHHcCCEEEEeCCcCCcc-c----
Q 022194          128 -----------DLDEVASAIGP----WTKLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDNSIMSPV-L----  183 (301)
Q Consensus       128 -----------d~~~l~~~l~~----~~~~v~i~~~~np~-G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~-~----  183 (301)
                                 |++++++++++    ++++|.++.++|.. |...   ++++|.++|++||+.+|.|.++..+- +    
T Consensus       144 ~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~  223 (450)
T TIGR02618       144 AQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKE  223 (450)
T ss_pred             cccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhc
Confidence                       79999999974    45578888888865 6773   58999999999999999999987631 1    


Q ss_pred             ------cCcc-------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcC-----CCCCHHhHHHHHc
Q 022194          184 ------SRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-----SGLAPFDCWICLR  245 (301)
Q Consensus       184 ------~~~~-------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  245 (301)
                            ..+.       ...+|.++.|..|..++|   ++|+++.+++.+.++.+......+     .+++.....++..
T Consensus       224 re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~---~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~  300 (450)
T TIGR02618       224 REQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVN---IGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAI  300 (450)
T ss_pred             ccccccCCCHHHHHHHHhccCcEEEEeeccCCCCC---CceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHH
Confidence                  1111       225899999999999776   469999899999888776654432     2233333333333


Q ss_pred             ccccH-H-HHHHHHHHHHHHHHHHHHhC
Q 022194          246 GVKTM-A-LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       246 ~l~~~-~-~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++++. + ...+....++++|.+.|.+.
T Consensus       301 gL~e~~~~~y~~~r~~~a~~La~~L~~~  328 (450)
T TIGR02618       301 GIREAVDYEYIEHRVKQVRYLGDKLKAA  328 (450)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHC
Confidence            44432 2 34455566788999999875

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK15029 arginine decarboxylase; Provisional

Probab=99.75  E-value=4.3e-17  Score=152.96  Aligned_cols=210  Identities=12%  Similarity=0.090  Sum_probs=151.6

Q ss_pred             HHHHHHHHHhhcCCCceEEecchH-HHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------
Q 022194           57 RDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~~sG~-~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------  127 (301)
                      ..+.++.+++.||+++..++++|| .++ .++++++++||+|++++++|-+..    ..+...|+..+++.+.       
T Consensus       207 I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~----~al~L~ga~Pvyl~P~~~~~Gi~  282 (755)
T PRK15029        207 FGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIE----QGLILTGAKPVYMVPSRNRYGII  282 (755)
T ss_pred             HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeEEEecccccccCCc
Confidence            889999999999999999999996 556 588889999999999999998887    4556778888888643       


Q ss_pred             ---C-----HHHHHhhcCC--Cce--------EEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcc-----cc
Q 022194          128 ---D-----LDEVASAIGP--WTK--------LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LS  184 (301)
Q Consensus       128 ---d-----~~~l~~~l~~--~~~--------~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~-----~~  184 (301)
                         +     .+.+++++..  ..+        ++++++|++ .|.+.++++|+++|++++++|++||+|+...     ++
T Consensus       283 ~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p  361 (755)
T PRK15029        283 GPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYA  361 (755)
T ss_pred             cCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECccccccccCcccc
Confidence               3     7888888752  233        899999999 7999999999999999999999999997532     21


Q ss_pred             --Ccc-----C-CCCc-EEEecccccccCCCCceeeEEEEcch--hH-HHHHHHhhhhcCCCCCHHhHHH----HHcccc
Q 022194          185 --RPL-----E-LGAD-IVMHSATKFIAGHSDVMAGVLAVKGE--RL-AKELYFLQNAEGSGLAPFDCWI----CLRGVK  248 (301)
Q Consensus       185 --~~~-----~-~~~d-i~~~S~sK~~~g~~g~~~g~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~l~  248 (301)
                        ...     . .|+| +++.|.||++++..  +++++..+..  .+ .+++........++.+.....+    +.+.++
T Consensus       362 ~~sa~~~~~~~~~Gad~~vvqStHKtL~alT--QaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~  439 (755)
T PRK15029        362 DHYAMRGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMD  439 (755)
T ss_pred             ccccccccccccCCCceEEEEchhhcccchh--hhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Confidence              112     2 6888 99999999997764  5788887554  12 2334444443333333322211    111121


Q ss_pred             c--HHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          249 T--MALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       249 ~--~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                      .  -.+..++..+.+..+++.+++.+.
T Consensus       440 ~~~G~~l~~~~i~~~~~~r~~l~~~~~  466 (755)
T PRK15029        440 GNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhccc
Confidence            1  133456677778888888877653

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.75  E-value=2e-16  Score=143.74  Aligned_cols=205  Identities=17%  Similarity=0.118  Sum_probs=136.9

Q ss_pred             HHHHHHhhcCCC-ceE-Ee---cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcc------cCCcEEEEecCC
Q 022194           60 LESLLAKLDKAD-RAL-CF---TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP------KTGVVVKRVNTC  127 (301)
Q Consensus        60 l~~~l~~~~~~~-~~i-~~---~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~------~~g~~~~~~~~~  127 (301)
                      .++.++++++++ +.+ +.   +||+++.. ++.+++++||+|++.+..|+++...+....+      ....++..++.+
T Consensus        85 ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~  164 (452)
T PTZ00094         85 CQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN  164 (452)
T ss_pred             HHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC
Confidence            446888999986 233 22   57888875 5788899999999998888887543321111      111333343333


Q ss_pred             -----CHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-----ccCCCCcEEEe
Q 022194          128 -----DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-----PLELGADIVMH  196 (301)
Q Consensus       128 -----d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~di~~~  196 (301)
                           |.+++++.++. ++++|++.  ++.+|...|+++|.++|+++|+++++|++|+.|....     +. .++|++++
T Consensus       165 ~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~-~~~D~l~~  241 (452)
T PTZ00094        165 EKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF-PYADVVTT  241 (452)
T ss_pred             CCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC-CCCcEEEc
Confidence                 89999999853 56777664  3348999999999999999999999999999887632     32 37999999


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHHhh--hh---cCCCCCHHhHHHHHcccccH-----HHHHHHHHHHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NA---EGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAE  266 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~  266 (301)
                      |+|||+.||.   +|+++++++. ...+....  ..   ...+.+....+++..+++.+     .+..++..++++++.+
T Consensus       242 S~hK~l~GP~---Gg~l~~~~~~-~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~  317 (452)
T PTZ00094        242 TTHKSLRGPR---SGLIFYRKKV-KPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAA  317 (452)
T ss_pred             CCccCCCCCC---ceEEEEeccc-chHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence            9999998875   4777776542 22111111  11   11233444444444444433     4566788888999999


Q ss_pred             HHHhC
Q 022194          267 FLASH  271 (301)
Q Consensus       267 ~l~~~  271 (301)
                      .|++.
T Consensus       318 ~L~~~  322 (452)
T PTZ00094        318 ALEKR  322 (452)
T ss_pred             HHHhC
Confidence            98774

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.74  E-value=3.2e-16  Score=126.22  Aligned_cols=214  Identities=19%  Similarity=0.174  Sum_probs=162.7

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------  127 (301)
                      |....+.+.+++++|++.+.++.+..++= ..+.+++++||.|++...+|++..    -.+++.|+.+..++..      
T Consensus        61 PpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYtty----vAAEragl~v~eVp~tg~Pey~  136 (382)
T COG1103          61 PPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTY----VAAERAGLNVAEVPNTGYPEYK  136 (382)
T ss_pred             CcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHH----HHHHhcCCeEEecCCCCCCceE
Confidence            55666777799999999777777777885 577789999999999999988876    6678899999999954      


Q ss_pred             -CHHHHHhhcC-------CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecc
Q 022194          128 -DLDEVASAIG-------PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (301)
Q Consensus       128 -d~~~l~~~l~-------~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~  198 (301)
                       +++...+.+.       +.+.+.+++++...-|.+.|.+.++++|+++|++++...+|..|.++ +..+.|+|++++|.
T Consensus       137 i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSG  216 (382)
T COG1103         137 ITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSG  216 (382)
T ss_pred             ecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecC
Confidence             4544443332       35788999999999999999999999999999999999999999877 45677999999999


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHHhh---------hhcCCCCCHHhHHHHHcccccHHHHHHH---HHHHHHHHHH
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQ---------NAEGSGLAPFDCWICLRGVKTMALRVEK---QQDNAQKIAE  266 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~  266 (301)
                      ||++.+.+  ..|++..+. ++.+.+....         ...|++.-......++.++....+|+++   -.++++++.+
T Consensus       217 HKsmAAs~--PiGvl~~~e-E~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv~  293 (382)
T COG1103         217 HKSMAASA--PIGVLAMSE-EWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFVA  293 (382)
T ss_pred             ccchhccC--CeeEEeehh-HHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99986543  368888874 4444332222         1244555445566677788877666655   4556777888


Q ss_pred             HHHhCCCcc
Q 022194          267 FLASHPRVK  275 (301)
Q Consensus       267 ~l~~~~~v~  275 (301)
                      .|+++.++.
T Consensus       294 elEkigg~~  302 (382)
T COG1103         294 ELEKIGGVK  302 (382)
T ss_pred             HHHHhhhHH
Confidence            888765544

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.74  E-value=1.6e-16  Score=142.69  Aligned_cols=251  Identities=15%  Similarity=0.183  Sum_probs=159.4

Q ss_pred             ceeeecCCCCCCCCcc---ccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEFDPYGAL---STPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~---~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~   87 (301)
                      .+++||. + +|++..   ++|.+........+.   ..........+...++++.++++++.+.+++++||++|+.+++
T Consensus        37 ~~~lD~~-s-~~~~~~~Gh~~p~v~~a~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai  111 (401)
T TIGR01885        37 KRYLDFL-S-AYSAVNQGHCHPKIVKALTEQAQK---LTLSSRAFYNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAI  111 (401)
T ss_pred             CEEEEcc-c-CHhhccCCCCCHHHHHHHHHHHHh---ccccccccCCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHH
Confidence            4688988 3 476655   255555443222111   1111111234568899999999999888999999998885443


Q ss_pred             hcc-----------CCCCeEEEcCCCCccHH-HHHhhhcc------cCC---cEEEEecCCCHHHHHhhcC---CCceEE
Q 022194           88 HLL-----------GTGEEIVAGDDLYGGTD-RLLSRVTP------KTG---VVVKRVNTCDLDEVASAIG---PWTKLV  143 (301)
Q Consensus        88 ~~~-----------~~g~~Vlv~~~~y~~~~-~~~~~~~~------~~g---~~~~~~~~~d~~~l~~~l~---~~~~~v  143 (301)
                      .++           ...+.|+.....||+.. ..+ ....      ..+   ..+..++..|++++++.++   +++.+|
T Consensus       112 ~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~av  190 (401)
T TIGR01885       112 KLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAI-SMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAF  190 (401)
T ss_pred             HHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHH-hCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEE
Confidence            331           22467778888888742 222 1111      111   2345556668888888875   467889


Q ss_pred             EEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-ccccCc-----cCCCCcEEEecccccccCCCCceeeEE
Q 022194          144 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVL  213 (301)
Q Consensus       144 ~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~~~-----~~~~~di~~~S~sK~~~g~~g~~~g~~  213 (301)
                      +++.+++++|...+    +++|.++|++||+++|+||+|.. +.....     .....|+++  ++|.+++ ++.+.|++
T Consensus       191 i~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~--~gK~l~~-g~~~ig~v  267 (401)
T TIGR01885       191 IVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVL--LGKALSG-GVYPVSAV  267 (401)
T ss_pred             EEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEE--eeccccC-CCCCcEEE
Confidence            99999999999986    99999999999999999999852 111111     122356554  7799964 44577888


Q ss_pred             EEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhC
Q 022194          214 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.++ .+.+.+.........+.++..+.++...++.+.  ...++..+..+++++.|+++
T Consensus       268 ~~~~-~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~l  326 (401)
T TIGR01885       268 LADD-DVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKL  326 (401)
T ss_pred             EEcH-HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            8764 455544322222233445666777767766653  24456667778888888875

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PLN02624 ornithine-delta-aminotransferase

Probab=99.74  E-value=1.3e-16  Score=145.30  Aligned_cols=254  Identities=11%  Similarity=0.086  Sum_probs=154.9

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      .+++||.++-  --+|..++.+..+.. .+.+.   ..+....+.++...++++.|+++++.+.+++++||++|+.+.+.
T Consensus        75 ~~ylD~~sg~~~~~~Gh~~p~v~~ai~-~ql~~---~~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk  150 (474)
T PLN02624         75 KKYLDFLSAYSAVNQGHCHPKIIKALT-EQAEK---LTLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIK  150 (474)
T ss_pred             CEEEEcccchhcccCCCCCHHHHHHHH-HHHHh---cCCcccccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHH
Confidence            5788986321  125655555444432 22221   11111123456688899999999988889999999998864433


Q ss_pred             ccC----------CC-CeEEEcCCCCccHHHHHhhhcccC---------CcEEEEecCCCHHHHHhhcC---CCceEEEE
Q 022194           89 LLG----------TG-EEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIG---PWTKLVWV  145 (301)
Q Consensus        89 ~~~----------~g-~~Vlv~~~~y~~~~~~~~~~~~~~---------g~~~~~~~~~d~~~l~~~l~---~~~~~v~i  145 (301)
                      +.+          ++ ..|+.....||+.....-.+....         .-.+..++..|++.+++.++   +++++|++
T Consensus       151 lAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiii  230 (474)
T PLN02624        151 LARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLF  230 (474)
T ss_pred             HHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEE
Confidence            221          12 357777788888743211111000         01234455668899988885   56889999


Q ss_pred             eCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-ccccCc---cCCCCcEEEecccccccCCCCceeeEEEEcc
Q 022194          146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP---LELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (301)
Q Consensus       146 ~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~~~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~  217 (301)
                      +.+++++|.+.|    +++|.++|++||+++|+||+|.. +..+..   ...+....+.+++|.+++ ++++.|+++.+.
T Consensus       231 Epv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lgg-G~~pigav~~~~  309 (474)
T PLN02624        231 EPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGG-GVIPVSAVLADK  309 (474)
T ss_pred             CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccC-CCCcceeeeecH
Confidence            999999999876    99999999999999999999973 211111   112333334447899954 456788888764


Q ss_pred             hhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHHh
Q 022194          218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~  270 (301)
                       .+...+.......+.+.++..+.++...++.+.+  ..++..++.+++++.|++
T Consensus       310 -~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~  363 (474)
T PLN02624        310 -DVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQK  363 (474)
T ss_pred             -HHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence             4444333223333344567777777666665432  333444555555555544

>PLN00144 acetylornithine transaminase

Probab=99.73  E-value=2.2e-16  Score=140.40  Aligned_cols=262  Identities=17%  Similarity=0.129  Sum_probs=161.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      ..++||.++  +.-+|..++.+..+.. .+.+  + ..+....+.++...++.+.|.+..+.+.+.+++||++|+.+.+.
T Consensus        15 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~q~~--~-~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~Alk   90 (382)
T PLN00144         15 KEYLDMAAGIAVNALGHGDPDWVKAVA-EQAG--T-LAHVSNVYHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIK   90 (382)
T ss_pred             CEEEECCcCHHhccCCCCCHHHHHHHH-HHHH--h-cCCccccccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHH
Confidence            578998644  3358887766555432 2211  1 11111112345678888888888777788899999999864433


Q ss_pred             cc----C------C------CCeEEEcCCCCccHHHHHhhhccc---------CCcEEEEecCCCHHHHHhhcC-CCceE
Q 022194           89 LL----G------T------GEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIG-PWTKL  142 (301)
Q Consensus        89 ~~----~------~------g~~Vlv~~~~y~~~~~~~~~~~~~---------~g~~~~~~~~~d~~~l~~~l~-~~~~~  142 (301)
                      +.    .      +      +.+|+.....||+...........         .--.+..++..|++.+++.+. .++++
T Consensus        91 lAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aa  170 (382)
T PLN00144         91 FARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAA  170 (382)
T ss_pred             HHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEE
Confidence            32    1      1      357999899999976432221111         001245566668999998886 57889


Q ss_pred             EEEeCCCCCccccc--c--HHHHHHHHHHcCCEEEEeCCcCCccc-cCc---cCCCCcEEEecccccccCCCCceeeEEE
Q 022194          143 VWVESPTNPRQQIC--D--IRKIAEMAHAHGALLLVDNSIMSPVL-SRP---LELGADIVMHSATKFIAGHSDVMAGVLA  214 (301)
Q Consensus       143 v~i~~~~np~G~~~--~--l~~l~~l~~~~~~~li~D~~~~~~~~-~~~---~~~~~di~~~S~sK~~~g~~g~~~g~~~  214 (301)
                      |+++..+||.|...  .  +++|.++|++||+++|+||+++.... ..+   ...+.+..+.+++|.++ + |++.|+++
T Consensus       171 vi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~-~-G~pig~v~  248 (382)
T PLN00144        171 VFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLA-G-GLPIGAVL  248 (382)
T ss_pred             EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEeccccc-C-CcceEEEE
Confidence            99998889855553  2  89999999999999999999864322 111   12344455888999995 3 57899999


Q ss_pred             EcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHH----HHHhCCCcceEec
Q 022194          215 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAE----FLASHPRVKKVNY  279 (301)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~----~l~~~~~v~~v~~  279 (301)
                      +++ .+.+.+.......+...++..++++...++.+.  +..++..+..+++.+    .++++|.+..+..
T Consensus       249 ~~~-~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg  318 (382)
T PLN00144        249 VTE-KVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRG  318 (382)
T ss_pred             EcH-HHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCCCceeeec
Confidence            874 455544333344455667777777765555442  233334444444444    3444554444443

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.73  E-value=2.1e-16  Score=134.07  Aligned_cols=211  Identities=25%  Similarity=0.244  Sum_probs=149.4

Q ss_pred             CCchHHHHH----HHHHhhcCCCc-eEEecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC--cEEEEe
Q 022194           53 GNPTRDALE----SLLAKLDKADR-ALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRV  124 (301)
Q Consensus        53 g~~~~~~l~----~~l~~~~~~~~-~i~~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g--~~~~~~  124 (301)
                      |....++++    ++.+++||++. .+=..||+.|. .++.++++|||+|+-.+..++++.... .-....|  .++...
T Consensus        66 Gce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg-~~v~~sG~~~~~v~Y  144 (413)
T COG0112          66 GCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHG-SPVNFSGKLFNVVSY  144 (413)
T ss_pred             CCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCC-CCCCccceeEEeEec
Confidence            333455544    55678899984 34467888776 688999999999998888887775322 0111222  233333


Q ss_pred             cCC------CHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CccccCccCCCCc
Q 022194          125 NTC------DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGAD  192 (301)
Q Consensus       125 ~~~------d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~-----~~~~~~~~~~~~d  192 (301)
                      +.+      |.|++++... .++++|+.-...+|  ...|++++.++|++.|++|.+|.+|-     .|.+++|... +|
T Consensus       145 ~vd~et~~IDyD~~~k~a~e~kPK~ii~G~SaY~--r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-Ad  221 (413)
T COG0112         145 GVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAYS--RPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-AD  221 (413)
T ss_pred             ccccccCccCHHHHHHHHHHhCCCEEEECccccc--cccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-cc
Confidence            332      7888887776 58999887666655  46799999999999999999999985     4667788887 99


Q ss_pred             EEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHh------HHHHHcccc-cHHHHHHHHHHHHHHHH
Q 022194          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD------CWICLRGVK-TMALRVEKQQDNAQKIA  265 (301)
Q Consensus       193 i~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~-~~~~~~~~~~~~~~~l~  265 (301)
                      ++++|.||+|.||   |+|++.++++++.+++...... +..-++..      +.++.+.++ .+.++.++..+|++.|.
T Consensus       222 vVTtTTHKTlrGP---rGG~Il~~~eel~kkin~aVFP-g~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLA  297 (413)
T COG0112         222 VVTTTTHKTLRGP---RGGIILTNDEELAKKINSAVFP-GLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALA  297 (413)
T ss_pred             eEeCCcccCCCCC---CceEEEeccHHHHHHhhhhcCC-ccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence            9999999999988   6799999987777755443221 11111111      122233333 45788899999999999


Q ss_pred             HHHHhC
Q 022194          266 EFLASH  271 (301)
Q Consensus       266 ~~l~~~  271 (301)
                      +.|.++
T Consensus       298 e~l~~~  303 (413)
T COG0112         298 EALKER  303 (413)
T ss_pred             HHHHHc
Confidence            999984

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.73  E-value=2.3e-16  Score=136.92  Aligned_cols=248  Identities=18%  Similarity=0.204  Sum_probs=166.5

Q ss_pred             eeeecCCCCCC--CCccccCeeecceeecCCCCCCCCccccCCCCch--HHHHHHHHHhhcCC-CceEEecchHHHHHHH
Q 022194           12 LLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRSGNPT--RDALESLLAKLDKA-DRALCFTSGMAALAAV   86 (301)
Q Consensus        12 ~~~~~~~~~~~--~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~--~~~l~~~l~~~~~~-~~~i~~~sG~~ai~~~   86 (301)
                      .++||..+...  +|..++++..+.. .+.+    .+   ..+|.|+  .-++.+.+.+++.. +.+.+++|||+|....
T Consensus        54 ~YIDy~~~~Gp~ilGH~~p~V~~Av~-~~l~----~G---~~fg~Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsA  125 (432)
T COG0001          54 EYIDYVLGWGPLILGHAHPAVVEAVQ-EQLE----RG---LSFGAPTELEVELAELLIERVPSIEKVRFVNSGTEATMSA  125 (432)
T ss_pred             EeeehhccCcccccCCCCHHHHHHHH-HHHH----hc---CCCCCCCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHH
Confidence            67777644444  6666655444332 2211    11   2234554  44566778888766 7889999999998655


Q ss_pred             Hhc---cCCCCeEEEcCCCCccHHHHHhhh----------------cccCCcEEEEecCCCHHHHHhhcC---CCceEEE
Q 022194           87 THL---LGTGEEIVAGDDLYGGTDRLLSRV----------------TPKTGVVVKRVNTCDLDEVASAIG---PWTKLVW  144 (301)
Q Consensus        87 ~~~---~~~g~~Vlv~~~~y~~~~~~~~~~----------------~~~~g~~~~~~~~~d~~~l~~~l~---~~~~~v~  144 (301)
                      +++   ....|+|+.++.+||++...+---                -...--.+..++.+|++.++++++   +++.+|+
T Consensus       126 iRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVI  205 (432)
T COG0001         126 IRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVI  205 (432)
T ss_pred             HHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEE
Confidence            554   445789999999999987654211                111112455666679999998887   4789999


Q ss_pred             EeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCcccc---CccCCCCcEEEecccccccCCCCceeeEEEEcc
Q 022194          145 VESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (301)
Q Consensus       145 i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~  217 (301)
                      ++......|.+.|    +++|.++|+++|++||.||+....-..   .-..+|....+.++.|.++|  |+..|++.++.
T Consensus       206 vEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlttlGKiIGG--GlP~ga~gGr~  283 (432)
T COG0001         206 VEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLTTLGKIIGG--GLPIGAFGGRA  283 (432)
T ss_pred             eccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchhhhhhhhcC--CcceeeeccHH
Confidence            9987777899876    889999999999999999997643221   22345677777789999965  67788888774


Q ss_pred             hhHHHHHHHhhhh---cCCCCCHHhHHHHHcccccHHH---HHHHHHHHHHHHHHHHHh
Q 022194          218 ERLAKELYFLQNA---EGSGLAPFDCWICLRGVKTMAL---RVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       218 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~l~~  270 (301)
                       ++++.+......   .+..-+|.+..+...+++.+.+   ..+++.+..++|++.|++
T Consensus       284 -eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~  341 (432)
T COG0001         284 -EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRA  341 (432)
T ss_pred             -HHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence             555644333322   2233456666666666666543   578888888888888875

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.72  E-value=1.6e-16  Score=143.63  Aligned_cols=248  Identities=14%  Similarity=0.123  Sum_probs=150.8

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC-CCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-ADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~-~~~~i~~~sG~~ai~~~~   87 (301)
                      .+++||.++-  .-+|..++.+..+.. .+.+  ...  .|. ...+...++.+.|++.+. .+++++++||++|+.+++
T Consensus        48 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~q~~--~~~--~~~-~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Al  121 (423)
T TIGR00713        48 NEYIDYVLSWGPLILGHAHPRVVEAVK-EALE--RGT--SYG-APTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAV  121 (423)
T ss_pred             CEEEEccccccccccCCCCHHHHHHHH-HHHH--hCC--cCC-CCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHH
Confidence            3678886432  236776665555432 2211  111  121 133457888999988774 357888899999986443


Q ss_pred             hc---cCCCCeEEEcCCCCccHHHHHhhh----------------cccCCcEEEEecCCCHHHHHhhcC---CCceEEEE
Q 022194           88 HL---LGTGEEIVAGDDLYGGTDRLLSRV----------------TPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWV  145 (301)
Q Consensus        88 ~~---~~~g~~Vlv~~~~y~~~~~~~~~~----------------~~~~g~~~~~~~~~d~~~l~~~l~---~~~~~v~i  145 (301)
                      .+   ...+++|+..++.||+........                ..........++..|++++++.+.   +++++|++
T Consensus       122 k~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~  201 (423)
T TIGR00713       122 RLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIV  201 (423)
T ss_pred             HHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEE
Confidence            32   335689999999999975322110                000111234455568999998886   57889998


Q ss_pred             e-CCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCcccc---CccCCCCcEEEecccccccCCCCceeeEEEEcc
Q 022194          146 E-SPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (301)
Q Consensus       146 ~-~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~  217 (301)
                      + .++| +|.+.+    +++|.++|++||+++|+||+|.....+   .....+.+..+.+|+|.++  +|++.|++++++
T Consensus       202 ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~t~sK~l~--~G~pig~v~~~~  278 (423)
T TIGR00713       202 EPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLTTLGKIIG--GGLPVGAFGGRR  278 (423)
T ss_pred             eCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchhhhhhhhc--CCCceeeeeEHH
Confidence            7 5555 788865    789999999999999999998643221   1111233333557999995  468899999875


Q ss_pred             hhHHHHHHHh---hhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHH
Q 022194          218 ERLAKELYFL---QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFL  268 (301)
Q Consensus       218 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l  268 (301)
                       .+.+.+...   ....+...++..+++++..++.+.+  ..++..+..+++++.|
T Consensus       279 -~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l  333 (423)
T TIGR00713       279 -EIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGL  333 (423)
T ss_pred             -HHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence             455544321   1223345677777776666654432  3344444444444433

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.72  E-value=3.1e-16  Score=139.56  Aligned_cols=251  Identities=18%  Similarity=0.128  Sum_probs=147.1

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecchHHHHHHHHhc
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGMAALAAVTHL   89 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~~ai~~~~~~   89 (301)
                      .+++||.+...+++..++|.+..+...+.+  +... ..+..-.+.+.++.+.+...  .+ ..++++||++|+.+++.+
T Consensus        29 ~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~--~~~~-~~~~~~~~~~~~la~~l~~~--~~~~~~~~~SGseA~~~Al~~  103 (375)
T PRK04260         29 KKYLDFSSGIGVTNLGFHPQVQQALQKQAG--LIWH-SPNLYLNSLQEEVAQKLIGD--KDYLAFFCNSGAEANEAAIKI  103 (375)
T ss_pred             CEEEECCCCcccccCCCCHHHHHHHHHHHH--hcCc-ccCccCCHHHHHHHHHHhcC--cCCEEEEcCccHHHHHHHHHH
Confidence            478999855466555556766654322211  1111 11111122244444433321  12 256778999988644433


Q ss_pred             ---cCCCCeEEEcCCCCccHHHHHhhhc------ccCCc---EEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           90 ---LGTGEEIVAGDDLYGGTDRLLSRVT------PKTGV---VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        90 ---~~~g~~Vlv~~~~y~~~~~~~~~~~------~~~g~---~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                         ..++++|++.+..||+.........      +..+.   .+...+..|++.+++.+.+++.+|+++.+++++|.+.+
T Consensus       104 ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~  183 (375)
T PRK04260        104 ARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVNKNTAAVMLELVQGESGVLPA  183 (375)
T ss_pred             HHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcCCCeEEEEECCeECCCCCcCC
Confidence               3456789999999997532211111      11111   12223345899999988888899999999999998864


Q ss_pred             ----HHHHHHHHHHcCCEEEEeCCcCCccc-cCcc---CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh
Q 022194          158 ----IRKIAEMAHAHGALLLVDNSIMSPVL-SRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (301)
Q Consensus       158 ----l~~l~~l~~~~~~~li~D~~~~~~~~-~~~~---~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~  229 (301)
                          +++|.++|+++|+++|+||+|..... ....   ..+.+..+.||||.++ + |++.|+++++++ +.+.+.....
T Consensus       184 ~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~-~-G~~ig~~~~~~~-~~~~~~~~~~  260 (375)
T PRK04260        184 DKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLA-N-GVPVGAMLAKSS-LGGAFGYGSH  260 (375)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEeccccc-C-CcceEEEEEcHH-HHhhcCCCCC
Confidence                89999999999999999999863211 1111   2233333558999995 3 578999999854 4443332223


Q ss_pred             hcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHH
Q 022194          230 AEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~  269 (301)
                      ......++..+.++...++.+  .+..++..++.+++++.++
T Consensus       261 ~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~  302 (375)
T PRK04260        261 GSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQ  302 (375)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            333445666666666666543  2334555555555555544

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.72  E-value=2.3e-16  Score=151.93  Aligned_cols=211  Identities=18%  Similarity=0.159  Sum_probs=152.8

Q ss_pred             HHHHHHHHHhhcCCCceEEecchH----HHHH-HHHhccCC-CC----eEEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           57 RDALESLLAKLDKADRALCFTSGM----AALA-AVTHLLGT-GE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~~sG~----~ai~-~~~~~~~~-g~----~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      .+++++++++++|++.+.+..+++    +++. ++..+.++ ||    +|+++...|+++...|.    ..|++++.++.
T Consensus       570 ~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~----~~G~~vv~v~~  645 (993)
T PLN02414        570 FEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA----MCGMKIVVVGT  645 (993)
T ss_pred             HHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH----HCCCEEEEecc
Confidence            678999999999998777766655    5654 66667766 77    89999999999985553    37899999986


Q ss_pred             C-----CHHHHHhhcC---CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcc--ccCccCCCCcEEEe
Q 022194          127 C-----DLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVMH  196 (301)
Q Consensus       127 ~-----d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~--~~~~~~~~~di~~~  196 (301)
                      +     |+++++++++   +++++|++++|+|-+|...|+++|+++||++|+++++|.++..+.  ...+.+.|+|++++
T Consensus       646 d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~  725 (993)
T PLN02414        646 DAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHL  725 (993)
T ss_pred             CCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEe
Confidence            4     8999999998   478999999999999999999999999999999999999997654  34567889999999


Q ss_pred             cccccccCCCC---ceeeEEEEcchhHHHHHHHh------------hhhcCCCCC--HH---h----HHHH--HcccccH
Q 022194          197 SATKFIAGHSD---VMAGVLAVKGERLAKELYFL------------QNAEGSGLA--PF---D----CWIC--LRGVKTM  250 (301)
Q Consensus       197 S~sK~~~g~~g---~~~g~~~~~~~~~~~~~~~~------------~~~~~~~~~--~~---~----~~~~--~~~l~~~  250 (301)
                      |.||+|++|.|   .-.|++.+++ .+...+-..            .....++.+  +.   .    ++..  .-+.+-+
T Consensus       726 s~HK~f~~P~G~GGPg~G~l~~~~-~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl  804 (993)
T PLN02414        726 NLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGL  804 (993)
T ss_pred             cCCccCCcCcccCCCCeeeEEEch-hhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHH
Confidence            99998875532   2258887775 333322110            000011111  11   0    1111  2223335


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCC
Q 022194          251 ALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      .+..+....++.++.+.|++..
T Consensus       805 ~~~a~~a~~nAnYl~~rL~~~~  826 (993)
T PLN02414        805 TDASKIAILNANYMAKRLEGHY  826 (993)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhC
Confidence            5556778889999999997743

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.72  E-value=1e-15  Score=130.83  Aligned_cols=193  Identities=16%  Similarity=0.191  Sum_probs=138.6

Q ss_pred             ceEEecch-HHHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----CHHHHHhhcC--------
Q 022194           72 RALCFTSG-MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIG--------  137 (301)
Q Consensus        72 ~~i~~~sG-~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~--------  137 (301)
                      ..+++++| +.++ .++..++++||.|++...+|.+..    ...+..|+.++.|+.+    ++|.+++.+.        
T Consensus       125 wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL----~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k  200 (472)
T KOG0634|consen  125 WDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSAL----QSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYK  200 (472)
T ss_pred             ceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHH----HhccccCceEEeccccCCCCCHHHHHHHHhcCCccccc
Confidence            35666666 6888 488889999999999999998886    6778899999999987    6777777764        


Q ss_pred             -CCceEEEE-eCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcccc---------------------------C
Q 022194          138 -PWTKLVWV-ESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---------------------------R  185 (301)
Q Consensus       138 -~~~~~v~i-~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~---------------------------~  185 (301)
                       +++++++. ...+||||....   -++|.++||+|++++|+||.|...-+.                           .
T Consensus       201 ~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sfls  280 (472)
T KOG0634|consen  201 KPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLS  280 (472)
T ss_pred             CCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCccc
Confidence             23666665 467899999986   456999999999999999998521111                           1


Q ss_pred             ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh--hhcCCCCCHHhHHHHHc------ccccHHHHHHHH
Q 022194          186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSGLAPFDCWICLR------GVKTMALRVEKQ  257 (301)
Q Consensus       186 ~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~  257 (301)
                      .+..|.++-..||||-+ + +|+|.||+.+++..+.+.+....  .....+.++...+++++      .++++.+.+..+
T Consensus       281 lDtdGrVIr~dSFSKii-a-PGlRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Y  358 (472)
T KOG0634|consen  281 LDTDGRVIRNDSFSKII-A-PGLRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSY  358 (472)
T ss_pred             ccccccEEeccchhhhh-c-CcceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12347789999999999 5 57899999988644433332222  12234445544444432      245667777777


Q ss_pred             HHHHHHHHHHHHh
Q 022194          258 QDNAQKIAEFLAS  270 (301)
Q Consensus       258 ~~~~~~l~~~l~~  270 (301)
                      ..++..+...+.+
T Consensus       359 t~Rrn~~l~Al~k  371 (472)
T KOG0634|consen  359 TERRNALLSALDK  371 (472)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777765

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.72  E-value=6.2e-16  Score=138.35  Aligned_cols=263  Identities=14%  Similarity=0.113  Sum_probs=161.8

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC-CCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-ADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~-~~~~i~~~sG~~ai~~~~   87 (301)
                      ..++||.++  +.-+|..++.+..+.. .+.+   ...+....+.++...++.+.|.+... .+.+.+++||++|+...+
T Consensus        40 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~q~~---~~~~~~~~~~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~Al  115 (408)
T PRK04612         40 REYLDLAAGIAVCGLGHNDPDLVAALT-EQAG---KLWHTSNVFYSAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAI  115 (408)
T ss_pred             CEEEEcCccHhhccCCCCCHHHHHHHH-HHHH---hccccccccCCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHH
Confidence            478888644  3458887666665442 2211   11111112234557788888888763 357888899999986443


Q ss_pred             hccC---------C-CCeEEEcCCCCccHHHHHhhhcc------cC---CcEEEEecCCCHHHHHhhcCC-CceEEEEeC
Q 022194           88 HLLG---------T-GEEIVAGDDLYGGTDRLLSRVTP------KT---GVVVKRVNTCDLDEVASAIGP-WTKLVWVES  147 (301)
Q Consensus        88 ~~~~---------~-g~~Vlv~~~~y~~~~~~~~~~~~------~~---g~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~  147 (301)
                      .+.+         + .++|+.....||+..........      .+   --.+..++..|.+.+++.+.+ ++.+|+++ 
T Consensus       116 klAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~e-  194 (408)
T PRK04612        116 KLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLE-  194 (408)
T ss_pred             HHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEEC-
Confidence            3321         1 34689989999997533211110      00   012345566689999988864 45555555 


Q ss_pred             CCCCcccccc-----HHHHHHHHHHcCCEEEEeCCcCCccc-c---CccCCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          148 PTNPRQQICD-----IRKIAEMAHAHGALLLVDNSIMSPVL-S---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       148 ~~np~G~~~~-----l~~l~~l~~~~~~~li~D~~~~~~~~-~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      |.+++|.+.+     +++|.++|++||+++|+||++..... .   .....+.++.+.+++|.++  +|++.|+++.+++
T Consensus       195 P~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~--~G~piga~~~~~~  272 (408)
T PRK04612        195 PIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALG--GGFPIGAMLAGPK  272 (408)
T ss_pred             CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhc--CCCceEEEEECHH
Confidence            5555655532     89999999999999999999863211 1   1123356788889999995  3578899887754


Q ss_pred             hHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh----CCCcceEecCC
Q 022194          219 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKVNYAG  281 (301)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~----~~~v~~v~~p~  281 (301)
                       +.+.+.........+.++..+.++...++.+.  +..++..++.+++.+.|++    ++.+..++..|
T Consensus       273 -~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~G  340 (408)
T PRK04612        273 -VAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQVRGRG  340 (408)
T ss_pred             -HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccc
Confidence             44544333333445567788888777776653  3456666666677777665    34444455554

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.71  E-value=2.5e-15  Score=136.40  Aligned_cols=215  Identities=20%  Similarity=0.162  Sum_probs=137.0

Q ss_pred             CCchHHHHHH----HHHhhcCCCc-eEEe----cchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHH--hhhc--ccCC
Q 022194           53 GNPTRDALES----LLAKLDKADR-ALCF----TSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLL--SRVT--PKTG  118 (301)
Q Consensus        53 g~~~~~~l~~----~l~~~~~~~~-~i~~----~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~--~~~~--~~~g  118 (301)
                      |....+++++    +..+.|+.++ .+++    .||+.|. .++.++++|||+|+..+...+++....  ....  ...+
T Consensus        74 G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~  153 (475)
T PLN03226         74 GNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATS  153 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccce
Confidence            4445666664    4556677663 4444    8898776 588889999999998664333332211  0111  1122


Q ss_pred             cEEE--EecCC------CHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC----
Q 022194          119 VVVK--RVNTC------DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----  185 (301)
Q Consensus       119 ~~~~--~~~~~------d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~----  185 (301)
                      ..+.  .+..+      |.+++++.+. .++++|++. .++ +|...|+++|.++|+++|+++++|++|+.|....    
T Consensus       154 ~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~-~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~  231 (475)
T PLN03226        154 IYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG-ASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAA  231 (475)
T ss_pred             EEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe-cCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCC
Confidence            2211  22222      8999999886 467766653 233 6778899999999999999999999998876642    


Q ss_pred             -ccCCCCcEEEecccccccCCCCceeeEEEEcchhH----------HHHHHHhhh----hcCCCCCHHhHHHHHccccc-
Q 022194          186 -PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL----------AKELYFLQN----AEGSGLAPFDCWICLRGVKT-  249 (301)
Q Consensus       186 -~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~----------~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~-  249 (301)
                       +.. ++|++++|+||++.||.   +|+++++++..          .+.......    ....++++...+++..+++. 
T Consensus       232 ~p~~-~~Div~~t~hK~L~GP~---Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i  307 (475)
T PLN03226        232 SPFE-YCDVVTTTTHKSLRGPR---GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQA  307 (475)
T ss_pred             CCCC-CCeEEEecCcccccCCC---ceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHH
Confidence             222 68999999999998875   58888765421          011111111    12233444444444444443 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          250 ----MALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       250 ----~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                          +.++.++..++++++++.|++ .++
T Consensus       308 ~~~~~~~~~~~~~~na~~L~~~L~~-~G~  335 (475)
T PLN03226        308 MTPEFKAYQKQVKANAAALANRLMS-KGY  335 (475)
T ss_pred             hCcCHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence                345678899999999999987 344

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.71  E-value=5.4e-16  Score=136.31  Aligned_cols=258  Identities=14%  Similarity=0.088  Sum_probs=165.6

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      ..++||.++  +.-+|..+++++.+.. .+.+  +.. +....+.++...++++.++++.+.+.+++++||++|+.+.+.
T Consensus        24 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~ql~--~~~-~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alk   99 (364)
T PRK04013         24 RRYLDLIAGIGVNVLGHNHPEWVEEMS-EQLE--KLV-VAGPMFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALK   99 (364)
T ss_pred             CEEEEcccChhhccCCCCCHHHHHHHH-HHHH--hcC-CccCCcCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHH
Confidence            478888633  3458887777665432 2211  111 111123456688999999999888889999999999864444


Q ss_pred             cc---CCCCeEEEcCCCCccHHHHHhhh---------cccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           89 LL---GTGEEIVAGDDLYGGTDRLLSRV---------TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        89 ~~---~~g~~Vlv~~~~y~~~~~~~~~~---------~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                      +.   +.+++|+..+.+||+.....-..         ....-..+..++..|.+.+++.+.+++++|+++......|...
T Consensus       100 lar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~aAvivEpi~g~gG~~~  179 (364)
T PRK04013        100 FARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAITKETAAVIFEPIQGEGGIVP  179 (364)
T ss_pred             HHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHhcCCcEEEEEcCCcCCCCCcC
Confidence            32   33488999999999975332111         0111123455666689999999988999999998887667664


Q ss_pred             -c---HHHHHHHHHHcCCEEEEeCCcCC---ccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh
Q 022194          157 -D---IRKIAEMAHAHGALLLVDNSIMS---PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (301)
Q Consensus       157 -~---l~~l~~l~~~~~~~li~D~~~~~---~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~  229 (301)
                       |   +++|.++|++||+++|+||++..   |.+......+....+.+++|.+++  |+..+.++.+.+ + .   ...+
T Consensus       180 ~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~gK~lgg--G~P~~a~~~~~~-~-~---~~~~  252 (364)
T PRK04013        180 AKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMGKGIGN--GVPVSLTLTNFD-V-E---RGKH  252 (364)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEecccccC--CceeEEEEeccc-c-c---CCCc
Confidence             4   99999999999999999999863   222222233444445558999965  366777777644 2 1   1234


Q ss_pred             hcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCC
Q 022194          230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  282 (301)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~  282 (301)
                      .++...++..++++.+.++.+.+  +.+.++++...+.++. +.|..++..|+
T Consensus       253 ~~T~~gnp~~~aaa~a~l~~i~~--~~l~~~~~~~l~~l~~-~~v~~vRG~Gl  302 (364)
T PRK04013        253 GSTFGGNPLACKAVAVTLRILRR--ERLVEKAGEKFIEIKG-ERVVTTRGRGL  302 (364)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHhcc-CcceeeeeCcE
Confidence            44566788888888888777643  2344444333233322 45555665554

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.70  E-value=4.3e-16  Score=140.99  Aligned_cols=254  Identities=17%  Similarity=0.105  Sum_probs=154.2

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-C-CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-K-ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~-~~~~i~~~sG~~ai~~~   86 (301)
                      .+++||.++  +..+|..++.+..+. ..+.+  ...........++...++.+.|++++ + .+.+++.+||++|+.+.
T Consensus        43 ~~ylD~~~g~~~~~lGh~~p~v~~a~-~~q~~--~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~A  119 (433)
T PRK08117         43 KEYLDFTSGIAVANVGHRHPKVVQAI-KEQAD--KLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGA  119 (433)
T ss_pred             CEEEECCcchhhccCCCCCHHHHHHH-HHHHH--hccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHH
Confidence            478898755  557886555544433 22211  11111111224566889999999988 3 34556668999998644


Q ss_pred             Hhc---cCCCCeEEEcCCCCccHHHHHhhhcc-------cCC---cEEEEecC-----------------CCHHHHHhhc
Q 022194           87 THL---LGTGEEIVAGDDLYGGTDRLLSRVTP-------KTG---VVVKRVNT-----------------CDLDEVASAI  136 (301)
Q Consensus        87 ~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~-------~~g---~~~~~~~~-----------------~d~~~l~~~l  136 (301)
                      +++   .....+|+..+..||+.......+..       ...   -.+..++.                 .+++++++.+
T Consensus       120 lklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  199 (433)
T PRK08117        120 LKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLF  199 (433)
T ss_pred             HHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHH
Confidence            443   33456788888999986532111110       000   01111111                 1345566554


Q ss_pred             C-----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccc-cC---ccCCCCcEEEeccccccc
Q 022194          137 G-----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVL-SR---PLELGADIVMHSATKFIA  203 (301)
Q Consensus       137 ~-----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~-~~---~~~~~~di~~~S~sK~~~  203 (301)
                      +     +++.+|+++......|.+.+    +++|.++|++||+++|+||+|+.... +.   ....+.+..+.+++|.++
T Consensus       200 ~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg  279 (433)
T PRK08117        200 KHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIA  279 (433)
T ss_pred             HhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhcc
Confidence            3     46889999988888888877    99999999999999999999973211 11   122355555678999995


Q ss_pred             CCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                        +|++.|+++++++ +.+.+.......+...++..+++++..++.+.  ...++..++.+++++.|++
T Consensus       280 --~G~pigav~~~~~-i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~  345 (433)
T PRK08117        280 --SGLPLSAVVASKE-LMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEV  345 (433)
T ss_pred             --CCCcceeEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence              3577888888754 44443322333334557777777777776552  3445555666666666654

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.70  E-value=1.3e-15  Score=128.39  Aligned_cols=220  Identities=23%  Similarity=0.238  Sum_probs=153.8

Q ss_pred             CCCC-chHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccC--CcEEEEecC
Q 022194           51 RSGN-PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT--GVVVKRVNT  126 (301)
Q Consensus        51 ~~g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~--g~~~~~~~~  126 (301)
                      .||+ +...+++++++++++...+++++|||.|.. ++.+.++|++.|++..-.|-...+.  ...+.+  +.++..++-
T Consensus        30 ~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~~~E~--Ga~~~~~~~~~~~~~~g  107 (342)
T COG2008          30 VYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYTDEC--GAPEFFGGGQKLPIVPG  107 (342)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCCCCeEEEeccccceeccc--CcHHHHcCCceeccCCC
Confidence            4455 559999999999999999999999998875 7888899999999988776544321  112222  234444441


Q ss_pred             C----CHHHHHhhcCC------CceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCc---ccc---Ccc
Q 022194          127 C----DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP---VLS---RPL  187 (301)
Q Consensus       127 ~----d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~---~~~---~~~  187 (301)
                      .    +++++++.+..      .+..+++.+.+|..|++++   +++|.++||++|+.|++|.+.-.-   .++   ...
T Consensus       108 ~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~  187 (342)
T COG2008         108 ADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTI  187 (342)
T ss_pred             CCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHH
Confidence            2    89999997762      3456666666667899986   666888999999999999995321   111   112


Q ss_pred             CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHH--hHHHHHcccccHHHHHHHHHHH--HHH
Q 022194          188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF--DCWICLRGVKTMALRVEKQQDN--AQK  263 (301)
Q Consensus       188 ~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~--~~~  263 (301)
                      ..++|++..++||..+.|    +|.++..+..+.++...++...|..+...  .++..+..++.--++.....+|  +++
T Consensus       188 ~~~~D~v~~~~tK~g~~~----~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~  263 (342)
T COG2008         188 KSYVDSVSFCLTKGGGAP----VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAAR  263 (342)
T ss_pred             HhhCCEEEEecccCCcce----eeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            347899999999998554    56666667788888888888877665442  3334445555433444455555  899


Q ss_pred             HHHHHHhCCCcce
Q 022194          264 IAEFLASHPRVKK  276 (301)
Q Consensus       264 l~~~l~~~~~v~~  276 (301)
                      |.+.+...++++.
T Consensus       264 La~~~~~~~G~~~  276 (342)
T COG2008         264 LAEGLEAKPGVKL  276 (342)
T ss_pred             HHHhhhhcCCcee
Confidence            9999998777643

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.70  E-value=1.5e-15  Score=124.62  Aligned_cols=209  Identities=16%  Similarity=0.155  Sum_probs=154.6

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           57 RDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      .+++.+-++..|...   ..++-++|+.+.. ++..++.|||+|++....-.  ..-+....+++|++|..++.+     
T Consensus        52 m~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~w--g~ra~D~~~r~ga~V~~v~~~~G~~~  129 (385)
T KOG2862|consen   52 MDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTW--GQRAADCARRYGAEVDVVEADIGQAV  129 (385)
T ss_pred             HHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechH--HHHHHHHHHhhCceeeEEecCcccCc
Confidence            677778888888654   3556677888874 77788999999997654322  223458899999999999866     


Q ss_pred             CHHHHHhhcC-CCceEEEEeCCCCCcccccc-HHHHHHHHHHcCCEEEEeCCcCCcc-ccCccCCCCcEEEecccccccC
Q 022194          128 DLDEVASAIG-PWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       128 d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~-l~~l~~l~~~~~~~li~D~~~~~~~-~~~~~~~~~di~~~S~sK~~~g  204 (301)
                      +++++.+++. .++++|++++..+.||..+| ++.+-++||+|++++++|.+-+.+. ....+++|.|+......|.+++
T Consensus       130 ~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~a  209 (385)
T KOG2862|consen  130 PLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGA  209 (385)
T ss_pred             cHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCC
Confidence            7899998887 57899999999999999999 6778899999999999999988665 4578889999999999999999


Q ss_pred             CCCceeeEEEEcchhHHHHHHHhh--------------hhcC---------CCCCHHhHHHHHccccc-----HHHHHHH
Q 022194          205 HSDVMAGVLAVKGERLAKELYFLQ--------------NAEG---------SGLAPFDCWICLRGVKT-----MALRVEK  256 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~~--------------~~~~---------~~~~~~~~~~~~~~l~~-----~~~~~~~  256 (301)
                      |+|+  +.+..+++.+ ++++...              +.++         .+.+....+.+..+++.     +++..++
T Consensus       210 P~GL--siisfS~ka~-~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~r  286 (385)
T KOG2862|consen  210 PAGL--SIISFSDKAL-EAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRR  286 (385)
T ss_pred             CCCc--ceeecCHHHH-HHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9996  6676665544 3222111              1122         12232333333334433     4667788


Q ss_pred             HHHHHHHHHHHHHh
Q 022194          257 QQDNAQKIAEFLAS  270 (301)
Q Consensus       257 ~~~~~~~l~~~l~~  270 (301)
                      +.++++.+...|++
T Consensus       287 H~e~s~~l~~~l~~  300 (385)
T KOG2862|consen  287 HREMSKWLKLSLEA  300 (385)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888888876

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.70  E-value=9.1e-16  Score=137.89  Aligned_cols=220  Identities=21%  Similarity=0.190  Sum_probs=157.4

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecchHHHHH-HHHhc---cC--C---C------CeEEEcCCCCccHHHHHhhhcccCC
Q 022194           57 RDALESLLAKLDKAD---RALCFTSGMAALA-AVTHL---LG--T---G------EEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~sG~~ai~-~~~~~---~~--~---g------~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      .+++-.+++++++.+   ...++++||+|+. ++++.   ..  .   +      -+|+++.-.|.++.    +.+...|
T Consensus       103 E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~----Kaa~~lG  178 (460)
T COG0076         103 EERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFE----KAARYLG  178 (460)
T ss_pred             HHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHH----HHHHHhC
Confidence            556677888888874   4678888898864 44332   11  0   1      15888888888886    7777778


Q ss_pred             cEEEEecCC------CHHHHHhhcCCCceE--EEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-----
Q 022194          119 VVVKRVNTC------DLDEVASAIGPWTKL--VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-----  185 (301)
Q Consensus       119 ~~~~~~~~~------d~~~l~~~l~~~~~~--v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-----  185 (301)
                      +....++.+      |++++++++.+++..  |+.+.+++++|.+.|+++|+++|+++++|++||.+++....+-     
T Consensus       179 ~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~  258 (460)
T COG0076         179 LGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDG  258 (460)
T ss_pred             CCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccc
Confidence            777777654      799999999977766  8888999999999999999999999999999999998765431     


Q ss_pred             ---ccCCCCcEEEecccccccCCCCceeeEEEEcchh-HHHHHHHhhhhcC---------C-C---CCHHhHHHHHccc-
Q 022194          186 ---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYFLQNAEG---------S-G---LAPFDCWICLRGV-  247 (301)
Q Consensus       186 ---~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~-~~~~~~~~~~~~~---------~-~---~~~~~~~~~~~~l-  247 (301)
                         ..-.++|.++.|+||++..|.|  +|+++.++++ +.+.+.......+         . +   -....+|+.+..+ 
T Consensus       259 ~~~f~l~~vdSIt~d~HK~g~aP~~--~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG  336 (460)
T COG0076         259 RWDFGLEGVDSITVDGHKYGLAPIG--CGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLG  336 (460)
T ss_pred             hhhcCCCCceEEEECcccccCCCCC--ceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhC
Confidence               1122679999999999988877  5888888874 4333221111111         0 0   1223344544443 


Q ss_pred             -ccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCC
Q 022194          248 -KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  282 (301)
Q Consensus       248 -~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~  282 (301)
                       +.+.+..++..++++++.+.|++.+....+..|.+
T Consensus       337 ~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l  372 (460)
T COG0076         337 REGYRKLLDRTLELARYLAEELEKLGDFELVNEPEL  372 (460)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCcc
Confidence             55778888899999999999999876655555544

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.69  E-value=6.8e-16  Score=143.68  Aligned_cols=212  Identities=17%  Similarity=0.138  Sum_probs=147.9

Q ss_pred             HHHHHHHHHhhcCCCceEEecchH-HHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------
Q 022194           57 RDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~~sG~-~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------  127 (301)
                      ..+.++.+++.||+++..++++|| .++ .++++++++||.||+.+++|.+...   ..+...|+..+++.+.       
T Consensus       176 i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~h---gaLiLsGa~PVYl~P~~n~~Gi~  252 (720)
T PRK13578        176 AKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHH---GALIQAGATPVYLETARNPFGFI  252 (720)
T ss_pred             HHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHH---HHHHHcCCeEEEeeccccccCCc
Confidence            788999999999999999999996 556 5888899999999999999988762   2345677888887643       


Q ss_pred             ---C-----HHHHHhhcCCC----------ceEEEEeCCCCCccccccHHHHHHH-HHHcCCEEEEeCCcCCcccc----
Q 022194          128 ---D-----LDEVASAIGPW----------TKLVWVESPTNPRQQICDIRKIAEM-AHAHGALLLVDNSIMSPVLS----  184 (301)
Q Consensus       128 ---d-----~~~l~~~l~~~----------~~~v~i~~~~np~G~~~~l~~l~~l-~~~~~~~li~D~~~~~~~~~----  184 (301)
                         +     .+.+++++.+.          .+++++++|++ .|.+.++++|+++ ++.++ +|++||+|+.....    
T Consensus       253 g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~  330 (720)
T PRK13578        253 GGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMM  330 (720)
T ss_pred             CCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeCcchhhhccCccc
Confidence               3     45577777643          58999999998 8999999999998 67888 99999999753321    


Q ss_pred             -----CccCCCCc----EEEecccccccCCCCceeeEEEEcchhH--------HHHHHHhhhhcCCCCCHHhHHHHHcc-
Q 022194          185 -----RPLELGAD----IVMHSATKFIAGHSDVMAGVLAVKGERL--------AKELYFLQNAEGSGLAPFDCWICLRG-  246 (301)
Q Consensus       185 -----~~~~~~~d----i~~~S~sK~~~g~~g~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-  246 (301)
                           ...+.|+|    +++.|.||.+++..  +++++..++..+        .+++........++.+.....+.+.. 
T Consensus       331 ~~~p~~al~~GaD~p~i~v~QStHKtL~alT--QaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmASLDva  408 (720)
T PRK13578        331 ADCSPLLLELNENDPGIFVTQSVHKQQAGFS--QTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFAALDVN  408 (720)
T ss_pred             ccCChhhhhcCCCCCCeEEEEChhhcchhhh--hHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence                 12456888    99999999997764  578887765322        13333333333333332222111111 


Q ss_pred             ---cc--cHHHHHHHHHHHHHHHHHHH-HhCCCcc
Q 022194          247 ---VK--TMALRVEKQQDNAQKIAEFL-ASHPRVK  275 (301)
Q Consensus       247 ---l~--~~~~~~~~~~~~~~~l~~~l-~~~~~v~  275 (301)
                         ++  .-.+..++..+.+..+++.| +..+.+.
T Consensus       409 ~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~  443 (720)
T PRK13578        409 AKMHEGESGRRLWMECVKLGIEARKLILARCKLIR  443 (720)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence               11  11334566777777888877 5555543

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.69  E-value=8.5e-15  Score=129.66  Aligned_cols=211  Identities=19%  Similarity=0.174  Sum_probs=147.6

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHHHHH-HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEec------
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN------  125 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~-~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~------  125 (301)
                      |+|+..++++.+++++|.+.++.+++|+.|+.++ ...++|||.|  +...|.....   ......|..+..+.      
T Consensus        76 gd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~---ahI~~~Ga~fvDi~~d~a~~  150 (460)
T PRK13237         76 GSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTR---YHQELNGGIFVDIIIDEAHD  150 (460)
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhH---HHHHhCCcEEEeeecccccc
Confidence            6678999999999999999999999999888644 3457899965  4444444332   32355565555442      


Q ss_pred             -----C----CCHHHHHhhcCC----CceEEEEeCCCCCcc-ccc---cHHHHHHHHHHcCCEEEEeCCcCCcc------
Q 022194          126 -----T----CDLDEVASAIGP----WTKLVWVESPTNPRQ-QIC---DIRKIAEMAHAHGALLLVDNSIMSPV------  182 (301)
Q Consensus       126 -----~----~d~~~l~~~l~~----~~~~v~i~~~~np~G-~~~---~l~~l~~l~~~~~~~li~D~~~~~~~------  182 (301)
                           +    -|++.+++++++    ++.+|.++.++|..| ...   ++++|.++|++||+.+|+|.++..+.      
T Consensus       151 ~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~  230 (460)
T PRK13237        151 AQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKE  230 (460)
T ss_pred             cccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcc
Confidence                 1    189999999874    345677777888774 443   68999999999999999999987651      


Q ss_pred             -----ccCcc-------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhc-C----CCCCHHhHHHHHc
Q 022194          183 -----LSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G----SGLAPFDCWICLR  245 (301)
Q Consensus       183 -----~~~~~-------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~  245 (301)
                           .....       ....|.+++|++|.+.++.   +|+++++++.+.++++...-.+ |    .+++.....++..
T Consensus       231 re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~---GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAv  307 (460)
T PRK13237        231 REEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI---GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAI  307 (460)
T ss_pred             cccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC---ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHh
Confidence                 11111       1247999999999987653   6999999999999887764333 2    2333323333333


Q ss_pred             cccc-H-HHHHHHHHHHHHHHHHHHHhC
Q 022194          246 GVKT-M-ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       246 ~l~~-~-~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++.+ . .++.+...+++++|.+.|.+.
T Consensus       308 gl~E~~~~~y~~~ri~~~~~l~~~L~~~  335 (460)
T PRK13237        308 GIEESVQYEYIEHRVGQVRYLGEKLLAA  335 (460)
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHHC
Confidence            3332 2 256677778888999998764

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.69  E-value=2.1e-15  Score=145.58  Aligned_cols=161  Identities=17%  Similarity=0.112  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHhhcCCC--c-eEEecch-HHHHHHH-Hhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           56 TRDALESLLAKLDKAD--R-ALCFTSG-MAALAAV-THL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~-~i~~~sG-~~ai~~~-~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      ..++.++.+++++|++  + .+++++| |++++.+ ..+ +++||+|+++...|++....+ ..++..|+++++++.+  
T Consensus        79 ~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~-~~a~~~G~~v~~v~~~~~  157 (805)
T PLN02724         79 TIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIR-EYALEKGAAAIAVDIEEA  157 (805)
T ss_pred             HHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHH-HHHHHcCCeEEeccchhc
Confidence            3788999999999974  3 3566655 6888744 444 678999999888888776444 6667789999888754  


Q ss_pred             -----------C--HHHHHhhc----------CCCceEEEEeCCCCCccccccHHHHHHHHHHc-------C-CEEEEeC
Q 022194          128 -----------D--LDEVASAI----------GPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-------G-ALLLVDN  176 (301)
Q Consensus       128 -----------d--~~~l~~~l----------~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~-------~-~~li~D~  176 (301)
                                 +  .+++++.+          .+++++|.+++.+|.+|.+.|++++..+++..       | +++++|.
T Consensus       158 ~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDa  237 (805)
T PLN02724        158 ANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDA  237 (805)
T ss_pred             cccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeeh
Confidence                       1  14455543          14568999999999999999999775555432       3 5799999


Q ss_pred             CcCCcccc-CccCCCCcEEEecccccccCCCCceeeEEEEcchh
Q 022194          177 SIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (301)
Q Consensus       177 ~~~~~~~~-~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~  219 (301)
                      +++.+..+ +....++|++++|+||++++|.|+  |+++.+++.
T Consensus       238 aQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~--G~L~vr~~~  279 (805)
T PLN02724        238 AKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGL--GALLVRRDA  279 (805)
T ss_pred             hhhcCCCCCChhhcCCCEEEEecceeccCCCCc--eEEEEehhh
Confidence            99998876 444678999999999999779884  888888653

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.69  E-value=1.6e-15  Score=138.75  Aligned_cols=181  Identities=17%  Similarity=0.144  Sum_probs=123.4

Q ss_pred             CeEEEcCCCCccHHHHHhhhcccCCc---EEEEecCC-----CHHHHHhhcC----CCceEEE--EeCCCCCccccccHH
Q 022194           94 EEIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIG----PWTKLVW--VESPTNPRQQICDIR  159 (301)
Q Consensus        94 ~~Vlv~~~~y~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~l~----~~~~~v~--i~~~~np~G~~~~l~  159 (301)
                      ..|++++-.|+++.    +.+...|+   .++.++.+     |+++++++++    ++++.+.  .+..++.+|.+.|++
T Consensus       210 ~~v~~S~~~H~S~~----kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~  285 (522)
T TIGR03799       210 LAILVSERGHYSLG----KAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLD  285 (522)
T ss_pred             eEEEECCCchHHHH----HHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHH
Confidence            46888888998886    34444444   56666654     7899988875    3444443  346677899999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCccccCc------cC-CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh----h
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVLSRP------LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----Q  228 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~~~~------~~-~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~----~  228 (301)
                      +|+++|+++|+|+++|.+|+.+....+      .. .++|.++.|.||++.+|.|  .|+++.+++...+.+...    .
T Consensus       286 eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g--~G~llvr~~~~~~~~~~~~~Yl~  363 (522)
T TIGR03799       286 EMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMG--AGMVLFKDPALMSAIEHHAEYIL  363 (522)
T ss_pred             HHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcc--cEEEEEeCHHHHHHhccCcchhc
Confidence            999999999999999999987654322      12 2689999999999989877  488888766554433221    0


Q ss_pred             h-h--------cCCCCC--HHhHHHHHccc--ccHHHHHHHHHHHHHHHHHHHHhCCCcceEecC
Q 022194          229 N-A--------EGSGLA--PFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  280 (301)
Q Consensus       229 ~-~--------~~~~~~--~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p  280 (301)
                      . .        ...+-.  ....|+.++.+  .-+++.+++..+.++++.+.|++.++++.+..|
T Consensus       364 ~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p  428 (522)
T TIGR03799       364 RKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEP  428 (522)
T ss_pred             CCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCC
Confidence            0 0        001111  12244444443  236777888899999999999988776554443

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.68  E-value=6.1e-15  Score=129.20  Aligned_cols=213  Identities=23%  Similarity=0.191  Sum_probs=130.8

Q ss_pred             CCchHHHHH----HHHHhhcCCC----ceEE-ecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHH-hhhc-----cc
Q 022194           53 GNPTRDALE----SLLAKLDKAD----RALC-FTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLL-SRVT-----PK  116 (301)
Q Consensus        53 g~~~~~~l~----~~l~~~~~~~----~~i~-~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~-~~~~-----~~  116 (301)
                      |....++++    ++++++|+++    .+-+ .-||+.|. .++.++++|||+|+..++.++++...- ..-.     ..
T Consensus        60 G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~  139 (399)
T PF00464_consen   60 GCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASG  139 (399)
T ss_dssp             STHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHH
T ss_pred             CcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhccccccccccccccccccc
Confidence            444455544    5577889988    4333 57888776 588889999999998888776664210 0000     00


Q ss_pred             CCcEEEEecCC------CHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----Ccccc
Q 022194          117 TGVVVKRVNTC------DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLS  184 (301)
Q Consensus       117 ~g~~~~~~~~~------d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~-----~~~~~  184 (301)
                      ...+...++.+      |.|++++.+. .++++|++....+|  ...|++++.++|++.|+++++|.+|.     .+.++
T Consensus       140 ~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~  217 (399)
T PF00464_consen  140 LYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASSYP--RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFP  217 (399)
T ss_dssp             HHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SSTS--S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS-
T ss_pred             ceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchhcc--CccCHHHHHHHHHhcCcEEEecccccccceehheec
Confidence            11234343332      8899988876 58999998877765  46799999999999999999999996     45677


Q ss_pred             CccCCCCcEEEecccccccCCCCceeeEEEEc-------------chhHHHHHHHhhhhcC-CCCCHHhH----HHHHcc
Q 022194          185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVK-------------GERLAKELYFLQNAEG-SGLAPFDC----WICLRG  246 (301)
Q Consensus       185 ~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~  246 (301)
                      +|+.. +|++++|.||+|.||   ++|+|+++             ++.+.+++........ .+......    .++.+.
T Consensus       218 ~P~~~-ADvvt~sThKtl~GP---rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea  293 (399)
T PF00464_consen  218 NPFPY-ADVVTGSTHKTLRGP---RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEA  293 (399)
T ss_dssp             -GCCT-SSEEEEESSGGG-SS---S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHH
T ss_pred             Ccccc-ceEEEeecccccccc---CceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcc
Confidence            88876 999999999999988   57999998             4567665554332211 11111111    112222


Q ss_pred             cc-cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          247 VK-TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       247 l~-~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +. .+.++.++..+|++.|.+.|++.
T Consensus       294 ~~~~fk~Ya~qVv~NAk~La~~L~~~  319 (399)
T PF00464_consen  294 LSPEFKEYAKQVVKNAKALAEALQER  319 (399)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            32 35788899999999999999986

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.68  E-value=1.7e-15  Score=136.68  Aligned_cols=251  Identities=18%  Similarity=0.178  Sum_probs=157.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~~~~~i~~~sG~~ai~~~~   87 (301)
                      ..++||.++  +.++|..+ |.+......+.+  . .. .+ .+..+...++.++|.+.+ +.+.+++++||++|+...+
T Consensus        50 ~~~lD~~~g~~~~~lGh~~-p~i~~a~~~~~~--~-~~-~~-~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Ai  123 (426)
T PRK00062         50 NEYIDYVGSWGPMILGHAH-PEVVEAVIEAAE--K-GL-SF-GAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAI  123 (426)
T ss_pred             CEEEEcccchhhhhcCCCC-HHHHHHHHHHHH--h-CC-cC-CCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHH
Confidence            478888744  36789854 444433222221  1 11 11 113355778889988876 5567888999999986443


Q ss_pred             hc---cCCCCeEEEcCCCCccHHHHHhhhcc----------cCCc------EEEEecCCCHHHHHhhcC---CCceEEEE
Q 022194           88 HL---LGTGEEIVAGDDLYGGTDRLLSRVTP----------KTGV------VVKRVNTCDLDEVASAIG---PWTKLVWV  145 (301)
Q Consensus        88 ~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~----------~~g~------~~~~~~~~d~~~l~~~l~---~~~~~v~i  145 (301)
                      .+   ...+++|+..++.||+..........          ..+.      ....++..|++.+++.+.   +++++|++
T Consensus       124 k~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiiv  203 (426)
T PRK00062        124 RLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIV  203 (426)
T ss_pred             HHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEE
Confidence            33   33467899999999997532211100          0111      123344457888888774   47889999


Q ss_pred             eCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccccC---ccCCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       146 ~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~~---~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      +.....+|.+.+    +++|.++|++||+++|+||+|.......   ....+....+.+++|.+++  |++.|++++++ 
T Consensus       204 Epv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi~~~gK~l~~--G~p~ga~~~~~-  280 (426)
T PRK00062        204 EPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDLTTLGKIIGG--GLPVGAFGGRR-  280 (426)
T ss_pred             eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcchHhhhhHhhC--CCcceeeeEHH-
Confidence            977777898877    9999999999999999999987331111   1122333345789999963  45678887764 


Q ss_pred             hHHHHHHHh---hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          219 RLAKELYFL---QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       219 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      .+.+.+...   ....+.+.++..+++++..++.+.  +..++..++.+++++.|++
T Consensus       281 ~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~  337 (426)
T PRK00062        281 EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKE  337 (426)
T ss_pred             HHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            455544311   122334567777777777776653  2556666666666666653

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.68  E-value=1.2e-15  Score=122.21  Aligned_cols=199  Identities=17%  Similarity=0.191  Sum_probs=147.9

Q ss_pred             ceEEecchH-HHHHHHHh-ccCCC-CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcC--CCce
Q 022194           72 RALCFTSGM-AALAAVTH-LLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--PWTK  141 (301)
Q Consensus        72 ~~i~~~sG~-~ai~~~~~-~~~~g-~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~--~~~~  141 (301)
                      +.++++-|+ +.|.++++ .+.|| ++|+...|.|.-|.    --+...+++++.++..     +.|.+.+.+.  ..++
T Consensus        87 dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~----v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK  162 (375)
T KOG0633|consen   87 DNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYV----VDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIK  162 (375)
T ss_pred             cceEEecCcHHHHHHHHhheecCCccceeecCCcceeEE----EEeecCCceEEEecCCCCccccHHHHHHHHhccccce
Confidence            678888888 77866655 58888 89999999998774    5567788999998875     7788888876  3789


Q ss_pred             EEEEeCCCCCccccccHHHHHHHHHHc-CCEEEEeCCcCC--c---cccCccCCCCcEEEecccccccCCCCceeeEEEE
Q 022194          142 LVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMS--P---VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAV  215 (301)
Q Consensus       142 ~v~i~~~~np~G~~~~l~~l~~l~~~~-~~~li~D~~~~~--~---~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~  215 (301)
                      ++++++|.||||.....+.|.++.+.. |+++++||+|-.  |   .......+..-+++.++||.| |.+|+|.|+-+.
T Consensus       163 ~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsf-GLAGiRvG~~~~  241 (375)
T KOG0633|consen  163 CIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSF-GLAGIRVGYGAF  241 (375)
T ss_pred             EEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhc-CcceeEeecccc
Confidence            999999999999999888888887764 799999999853  2   223344567789999999999 789999999988


Q ss_pred             cchhHHHHHHHhhhhcCC-CCCHHhHHHHHc--ccccHHHHHHHHHHHHHHHHHHHHhCCCcce
Q 022194          216 KGERLAKELYFLQNAEGS-GLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKK  276 (301)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~  276 (301)
                      +. .+.+.+......+.. ......+..++.  ..+.++..++.+.+.+.++...|...+.+..
T Consensus       242 ~~-~ia~iln~~KaPYNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~  304 (375)
T KOG0633|consen  242 PL-SIAEILNRAKAPYNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLND  304 (375)
T ss_pred             cH-HHHHHHHhccCCccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccC
Confidence            74 455544444333221 122222222333  3455777788888888889888888876643

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.67  E-value=5.1e-15  Score=133.80  Aligned_cols=265  Identities=13%  Similarity=0.090  Sum_probs=158.5

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC--CceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~~~   86 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+  ...........++...++.+.|.+....  +.+.+++||++|+.+.
T Consensus        41 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~ql~--~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~A  117 (443)
T PRK08360         41 NEYIDFLSDAAVQNVGHNNPRVVKAIK-EQTD--KLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGA  117 (443)
T ss_pred             CEEEEccccHhhcccCCCCHHHHHHHH-HHHH--hccCccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHH
Confidence            478888644  5568887766655432 2211  1111111111345578888889888753  4678889999998644


Q ss_pred             Hhc---cCCCCeEEEcCCCCccHHHHHhhhcc-------cCC--cEEEEecCC-----------------CHHHHHhhcC
Q 022194           87 THL---LGTGEEIVAGDDLYGGTDRLLSRVTP-------KTG--VVVKRVNTC-----------------DLDEVASAIG  137 (301)
Q Consensus        87 ~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~-------~~g--~~~~~~~~~-----------------d~~~l~~~l~  137 (301)
                      +.+   .....+|+.....||+..........       ..+  ..+..++..                 +++.+++.+.
T Consensus       118 lklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (443)
T PRK08360        118 IKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFE  197 (443)
T ss_pred             HHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHH
Confidence            443   33456788888889887422111100       001  112222211                 2334555552


Q ss_pred             -----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-cccC---ccCCCCcEEEecccccccC
Q 022194          138 -----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLSR---PLELGADIVMHSATKFIAG  204 (301)
Q Consensus       138 -----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~~---~~~~~~di~~~S~sK~~~g  204 (301)
                           +++++|+++..+|++|.+.+    +++|.++|++||+++|+||+|... ....   ....+.+..+.+++|.++ 
T Consensus       198 ~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~-  276 (443)
T PRK08360        198 GEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLG-  276 (443)
T ss_pred             hccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEeccccc-
Confidence                 57899999988899998764    899999999999999999998732 2221   112233223447899995 


Q ss_pred             CCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh----CCCcceEe
Q 022194          205 HSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKVN  278 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~----~~~v~~v~  278 (301)
                       +|++.|++++++ .+.+.+.......+...++..+.++...++.+.  +..++..++.+++++.|++    ++.+..++
T Consensus       277 -~G~pigav~~~~-~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vr  354 (443)
T PRK08360        277 -GGLPISATIGRA-EIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVR  354 (443)
T ss_pred             -CCceeEEEEEcH-HHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeee
Confidence             468899998874 455544333333445567777777777766653  3445666666666666653    44444444


Q ss_pred             cCC
Q 022194          279 YAG  281 (301)
Q Consensus       279 ~p~  281 (301)
                      .-|
T Consensus       355 g~G  357 (443)
T PRK08360        355 GIG  357 (443)
T ss_pred             ccc
Confidence            333

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.67  E-value=3.5e-15  Score=134.66  Aligned_cols=256  Identities=13%  Similarity=0.101  Sum_probs=155.7

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+  .........+.++...++.+.|.+.+.  .+.+.+++||++|+.+.
T Consensus        42 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~q~~--~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A  118 (423)
T PRK05964         42 RELIDAISSWWVATHGHNHPYIDQAIR-EQLD--RLDHVIFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVA  118 (423)
T ss_pred             CEEEEcchhHHhccCCCCCHHHHHHHH-HHHh--hCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHH
Confidence            478888644  4458887666554432 2211  111111112234567888899988873  46788899999998644


Q ss_pred             Hhcc---------CCCCeEEEcCCCCccHHHHHhhhccc-----------CCcEEEEecCCC-----HHHHHhhcC---C
Q 022194           87 THLL---------GTGEEIVAGDDLYGGTDRLLSRVTPK-----------TGVVVKRVNTCD-----LDEVASAIG---P  138 (301)
Q Consensus        87 ~~~~---------~~g~~Vlv~~~~y~~~~~~~~~~~~~-----------~g~~~~~~~~~d-----~~~l~~~l~---~  138 (301)
                      +++.         ..+.+|+.....||+...........           .+......+..|     .+.+++.+.   +
T Consensus       119 ~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~  198 (423)
T PRK05964        119 LKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAG  198 (423)
T ss_pred             HHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCC
Confidence            4432         23468999999999875433221111           122333333334     777787774   5


Q ss_pred             CceEEEEeC-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-cccCc---cCCCCcEEEecccccccCCCCce
Q 022194          139 WTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLSRP---LELGADIVMHSATKFIAGHSDVM  209 (301)
Q Consensus       139 ~~~~v~i~~-~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~~~---~~~~~di~~~S~sK~~~g~~g~~  209 (301)
                      ++.+|+++. .+...|...+    +++|.++|++||+++|+||++... ..+..   ...+....+.+++|+++| +.+.
T Consensus       199 ~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~K~l~g-G~~p  277 (423)
T PRK05964        199 EIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTG-GYLP  277 (423)
T ss_pred             cEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCeeeeehhhhc-Cccc
Confidence            677888887 5776777653    999999999999999999998532 11111   223444445578999954 3355


Q ss_pred             eeEEEEcchhHHHHHHHh------hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhC
Q 022194          210 AGVLAVKGERLAKELYFL------QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       210 ~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .|+++.++ .+.+.+...      ....+...++..++++...++.+.  ...++..+..+++++.|++.
T Consensus       278 ~~av~~~~-~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l  346 (423)
T PRK05964        278 LAATLCTA-EIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPF  346 (423)
T ss_pred             ceEEEEcH-HHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence            77777764 455544321      112223457777777777776543  34566677777777777653

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.67  E-value=2.2e-15  Score=122.95  Aligned_cols=215  Identities=22%  Similarity=0.307  Sum_probs=154.8

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchH-HHHHHHHhcc-CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGM-AALAAVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~-~ai~~~~~~~-~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      |...+|++..++++|.+..+|++||| ..+.+++.-+ ++|.+|++.+.+|--..+. ..+..-.|+.++.+...     
T Consensus        56 ~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~HI~~~E~-gg~s~l~gv~~~tv~~e~dgtm  134 (384)
T KOG1368|consen   56 PTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQ-GGISQLAGVHVRTVKNENDGTM  134 (384)
T ss_pred             ccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceEEeccchheeehhc-cChhhhccceeEeeeeCCCCee
Confidence            56899999999999999999999998 4456777765 4899999988765322221 14455567777777654     


Q ss_pred             CHHHHHhhcC--------CCceEEEEeCCCCCcc-ccccH---HHHHHHHHHcCCEEEEeCCcCCcc---ccCcc---CC
Q 022194          128 DLDEVASAIG--------PWTKLVWVESPTNPRQ-QICDI---RKIAEMAHAHGALLLVDNSIMSPV---LSRPL---EL  189 (301)
Q Consensus       128 d~~~l~~~l~--------~~~~~v~i~~~~np~G-~~~~l---~~l~~l~~~~~~~li~D~~~~~~~---~~~~~---~~  189 (301)
                      |++++|+++.        +.+++|++++.+|.+| .+.|+   .++.++|+++|+.+++|.+.-.-+   ..-+.   ..
T Consensus       135 ~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~  214 (384)
T KOG1368|consen  135 DLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICS  214 (384)
T ss_pred             eHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHH
Confidence            7999999987        3589999999998887 77774   557788999999999999953211   11111   12


Q ss_pred             CCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCC--CHHhHHHHHcccccHHHHHHHHHHHHHHHHHH
Q 022194          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMALRVEKQQDNAQKIAEF  267 (301)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  267 (301)
                      ..|-+-..+||.+++|    .|.++..++.++.+.+..+...|.++  +...+++++-++++--...+.-.++++.+.++
T Consensus       215 ~fDSVsiCLSKglgAP----VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~~~~L~~dHk~A~~lAe~  290 (384)
T KOG1368|consen  215 AFDSVSICLSKGLGAP----VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDENVPLLRADHKRAKELAEY  290 (384)
T ss_pred             hhhhhhhhhhccCCCC----cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            3577777799999876    35555555788888888888877665  33445555666655433556667788888888


Q ss_pred             HHhCCCc
Q 022194          268 LASHPRV  274 (301)
Q Consensus       268 l~~~~~v  274 (301)
                      +...+++
T Consensus       291 ~~~~~~i  297 (384)
T KOG1368|consen  291 INTPEEI  297 (384)
T ss_pred             hccccce
Confidence            8866544

>PLN02263 serine decarboxylase

Probab=99.67  E-value=1.2e-14  Score=129.85  Aligned_cols=216  Identities=15%  Similarity=0.155  Sum_probs=152.9

Q ss_pred             HHHHHHHHHhhcCCC----ceEEecchHHHH-HHHHhc--cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           57 RDALESLLAKLDKAD----RALCFTSGMAAL-AAVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~----~~i~~~sG~~ai-~~~~~~--~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      ..++-+++++++|.+    ..+++++||+++ .++...  ..+...|++++-.|+++.    +.+...|++++.++.+  
T Consensus       135 E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~----KAa~llgi~~~~Vp~d~~  210 (470)
T PLN02263        135 EVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDTLVS  210 (470)
T ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHH----HHHHhcCCcceEeccCCC
Confidence            567778999999874    268888889886 344332  223346888888998886    6667788888888865  


Q ss_pred             ---CHHHHHhhcCCC---ceEEEEeCCCCCccccccHHHHHHHHHHcCC-----EEEEeCCcCCccccC-------ccCC
Q 022194          128 ---DLDEVASAIGPW---TKLVWVESPTNPRQQICDIRKIAEMAHAHGA-----LLLVDNSIMSPVLSR-------PLEL  189 (301)
Q Consensus       128 ---d~~~l~~~l~~~---~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~-----~li~D~~~~~~~~~~-------~~~~  189 (301)
                         |.++|++++.++   +.+|+.+.+++++|.+.|+++|+++|+++|+     |+++|.+++....+.       ....
T Consensus       211 g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~  290 (470)
T PLN02263        211 GEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKK  290 (470)
T ss_pred             CcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCc
Confidence               889999888633   5677778899999999999999999999997     999999998654421       1112


Q ss_pred             CCcEEEecccccccCCCCceeeEEEEcchhHHHHHH----Hhhh----hcC--CCCCHHhHHHHHcc--cccHHHHHHHH
Q 022194          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY----FLQN----AEG--SGLAPFDCWICLRG--VKTMALRVEKQ  257 (301)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~----~~~~----~~~--~~~~~~~~~~~~~~--l~~~~~~~~~~  257 (301)
                      .+|-+..++||+++.|-+  .|+++.+++.+ ..+.    .+..    ..+  .+......|+.++.  .+.+.+++++.
T Consensus       291 ~vDSIsvD~HK~l~~P~~--cgvll~R~~~~-~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~  367 (470)
T PLN02263        291 PIGSVSVSGHKFVGCPMP--CGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKC  367 (470)
T ss_pred             CccEEEECCccccCCCcC--EEEEEEehhhH-hhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            389999999999988765  68888885433 2111    1110    011  11123456665554  34578888999


Q ss_pred             HHHHHHHHHHHHhCCCcceEecC
Q 022194          258 QDNAQKIAEFLASHPRVKKVNYA  280 (301)
Q Consensus       258 ~~~~~~l~~~l~~~~~v~~v~~p  280 (301)
                      .++++++.+.|+++ ++..+..|
T Consensus       368 ~~~A~~l~~~l~~~-g~~~~~~p  389 (470)
T PLN02263        368 LRNAHYLKDRLREA-GISAMLNE  389 (470)
T ss_pred             HHHHHHHHHHHHhC-CCeEEeCC
Confidence            99999999999886 33333333

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.66  E-value=4.2e-15  Score=133.96  Aligned_cols=265  Identities=15%  Similarity=0.164  Sum_probs=155.7

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~~   85 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+  +.....+....++...++.+.|.+...   .+.+.+++||++|+.+
T Consensus        33 ~~ylD~~~g~~~~~lGh~~p~v~~a~~-~ql~--~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~  109 (420)
T TIGR00700        33 NRLIDFASGIAVLNIGHSHPRVVDAVR-TQVA--EFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVEN  109 (420)
T ss_pred             CEEEECccCHHhccCCCCCHHHHHHHH-HHHH--hccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHH
Confidence            478888533  3447887666555432 2211  111112222244557788888888763   2568888999999864


Q ss_pred             HHhc---cCCCCeEEEcCCCCccHHHHHhhhcc-----cCCc-----EEEEecCC----------------CHHHHHhhc
Q 022194           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----KTGV-----VVKRVNTC----------------DLDEVASAI  136 (301)
Q Consensus        86 ~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~-----~~g~-----~~~~~~~~----------------d~~~l~~~l  136 (301)
                      .+.+   ...+.+|+....+||+.......+..     ..+.     .+..++..                +++.+++.+
T Consensus       110 AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (420)
T TIGR00700       110 AVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIF  189 (420)
T ss_pred             HHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHH
Confidence            4443   33456788889999997643222111     0110     11112210                144566554


Q ss_pred             -----CCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCcccc----CccCCCCcEEEeccccccc
Q 022194          137 -----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIA  203 (301)
Q Consensus       137 -----~~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~di~~~S~sK~~~  203 (301)
                           .+++.+|+++.....+|...+    +++|.++|++||+++|+||++......    .....+....+.+++|.++
T Consensus       190 ~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~  269 (420)
T TIGR00700       190 VIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLA  269 (420)
T ss_pred             HhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeecccc
Confidence                 257889999988887888765    899999999999999999998743221    1122344444566999995


Q ss_pred             CCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHH----hCCCcceE
Q 022194          204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA----SHPRVKKV  277 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~----~~~~v~~v  277 (301)
                        +|++.|++++++ .+.+.+.......+.+.++..++++++.++.+.  ...++..+..+++++.|+    +++.+..+
T Consensus       270 --~G~pig~v~~~~-~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v  346 (420)
T TIGR00700       270 --DGLPLSGVTGRA-EIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDV  346 (420)
T ss_pred             --CCcceEEEEecH-HHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEe
Confidence              468999999875 455544333333445567777777766655431  222333333344444443    34444444


Q ss_pred             ecCC
Q 022194          278 NYAG  281 (301)
Q Consensus       278 ~~p~  281 (301)
                      ...|
T Consensus       347 rg~G  350 (420)
T TIGR00700       347 RGLG  350 (420)
T ss_pred             eccc
Confidence            4443

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.66  E-value=2.6e-15  Score=133.56  Aligned_cols=150  Identities=15%  Similarity=0.098  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhhcCCC---ceEEec-chHHHHH-HHHhccCC-CCeEEEcCCCCccHHHHHhh-hcccCCc-EEEEecCC-
Q 022194           57 RDALESLLAKLDKAD---RALCFT-SGMAALA-AVTHLLGT-GEEIVAGDDLYGGTDRLLSR-VTPKTGV-VVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~-sG~~ai~-~~~~~~~~-g~~Vlv~~~~y~~~~~~~~~-~~~~~g~-~~~~~~~~-  127 (301)
                      .++.++.++++++.+   ++++++ |||.++. ++..++++ ++.|++ ...|+.-   |.. ..+..|. +++.+..+ 
T Consensus        50 ~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~---~~~~~~~~~g~~~v~~~~~~~  125 (378)
T PRK03080         50 LKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSK---WATDVVKQLKLEDPRVLEADY  125 (378)
T ss_pred             HHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHH---HHHHHHhhcCCCCceEeccCC
Confidence            788889999999963   466665 7789986 55666764 444444 4454442   223 3356677 77776643 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEeccccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~  203 (301)
                          |++++    +. +++|.+++..|.||...|+++|++  |++|+++++|.+++.|..+-.... .|++++|.+|+++
T Consensus       126 g~~~d~~~i----~~-~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~-iD~~~~s~~K~l~  197 (378)
T PRK03080        126 GSLPDLSAV----DF-DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK-LDVYTFSWQKVLG  197 (378)
T ss_pred             CCCCCHhhc----CC-CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH-CcEEEEehhhhCC
Confidence                44443    22 567899999999999999999999  889999999999999987644433 7999999999999


Q ss_pred             CCCCceeeEEEEcchhH
Q 022194          204 GHSDVMAGVLAVKGERL  220 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~  220 (301)
                      +|+|  .|+++.+++.+
T Consensus       198 ~P~G--~g~l~v~~~~~  212 (378)
T PRK03080        198 GEGG--HGMAILSPRAV  212 (378)
T ss_pred             CCCc--eEEEEECHHHH
Confidence            9888  49998886544

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.66  E-value=6.7e-15  Score=132.44  Aligned_cols=265  Identities=14%  Similarity=0.117  Sum_probs=162.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCC--CceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKA--DRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~~   85 (301)
                      ..+|||.++  +.-+|..++.+..+.. .+.+  ...  ..+.+ ..+...++.+.|.+++..  +.+++++||++|+.+
T Consensus        75 ~~ylD~~~g~~~~~lGh~hp~v~~Av~-~ql~--~l~--~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~  149 (442)
T TIGR03372        75 NEFIDCLGGFGIFNVGHRNPNVIAAVE-NQLA--KQP--LHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEA  149 (442)
T ss_pred             CEEEECCccHHhhhcCCCCHHHHHHHH-HHHH--hCC--CcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHH
Confidence            478998755  5568977777665432 2211  111  11222 456688899999988743  457788999999864


Q ss_pred             HHhccC------CCCeEEEcCCCCccHHHHHhhhcc---------cCCcEEEEecCCCHHHHHhhcC------CCceEEE
Q 022194           86 VTHLLG------TGEEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTCDLDEVASAIG------PWTKLVW  144 (301)
Q Consensus        86 ~~~~~~------~g~~Vlv~~~~y~~~~~~~~~~~~---------~~g~~~~~~~~~d~~~l~~~l~------~~~~~v~  144 (301)
                      .+.+.+      .+.+|+.....||+..........         ...-.+..++..|.+.+++.++      .++.+|+
T Consensus       150 AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavI  229 (442)
T TIGR03372       150 ALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAII  229 (442)
T ss_pred             HHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEE
Confidence            444321      346799999999998533211111         0112245566667877776663      4678999


Q ss_pred             EeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-Ccccc---CccCCCCcEEEecccccccCCCCceeeEEEEc
Q 022194          145 VESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (301)
Q Consensus       145 i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~-~~~~~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~  216 (301)
                      ++......|...|    +++|.++|++||+++|+||++. .|..+   .....+....+.+++|.+++. -+..|.++++
T Consensus       230 vEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G-~~Pigavv~~  308 (442)
T TIGR03372       230 LEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGG-VMPIGATIAT  308 (442)
T ss_pred             EeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCC-cccceEEEec
Confidence            9988887888876    9999999999999999999985 22222   122234333344599999642 1235666666


Q ss_pred             chhHHHHHHHh--hhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHHh----CC-CcceEecCCC
Q 022194          217 GERLAKELYFL--QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HP-RVKKVNYAGL  282 (301)
Q Consensus       217 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~----~~-~v~~v~~p~~  282 (301)
                      + .+.+.+...  .+..+.+-++..++++++.++.+.+  ..++..+..+++++.|++    ++ .+..++..|+
T Consensus       309 ~-~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl  382 (442)
T TIGR03372       309 E-AVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGL  382 (442)
T ss_pred             H-HHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceE
Confidence            4 454544211  2223344478888888888777642  245555555666666654    45 4455555544

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.66  E-value=4.4e-15  Score=133.71  Aligned_cols=263  Identities=12%  Similarity=0.079  Sum_probs=154.9

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~~   85 (301)
                      ..++||.++  +.-+|..++.+..+.. .+.+  ......+....++...++.+.|.+...   .+.+++++||++|+.+
T Consensus        40 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~ql~--~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~  116 (421)
T PRK09792         40 NEYIDFAAGIAVLNTGHRHPDLVAAVE-QQLQ--QFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVEN  116 (421)
T ss_pred             CEEEEccCchhhhcCCCCCHHHHHHHH-HHHH--hccCcccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHH
Confidence            467887533  2347877655554432 2211  111112222245567788888888763   2478888999999864


Q ss_pred             HHhc---cCCCCeEEEcCCCCccHHHHHhhhcc-----c-------CCcEEEEecC--------CCHHHHHhhcC-----
Q 022194           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----K-------TGVVVKRVNT--------CDLDEVASAIG-----  137 (301)
Q Consensus        86 ~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~-----~-------~g~~~~~~~~--------~d~~~l~~~l~-----  137 (301)
                      .+.+   .....+|+.....||+..........     .       .++....++.        ++++.+++.+.     
T Consensus       117 AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~  196 (421)
T PRK09792        117 AVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEA  196 (421)
T ss_pred             HHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCC
Confidence            4443   23446789999999997533211100     1       1112222221        13467777764     


Q ss_pred             CCceEEEEeCCCCCccccc-c---HHHHHHHHHHcCCEEEEeCCcCCccc-cC---ccCCCCcEEEecccccccCCCCce
Q 022194          138 PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIMSPVL-SR---PLELGADIVMHSATKFIAGHSDVM  209 (301)
Q Consensus       138 ~~~~~v~i~~~~np~G~~~-~---l~~l~~l~~~~~~~li~D~~~~~~~~-~~---~~~~~~di~~~S~sK~~~g~~g~~  209 (301)
                      +++++|+++..++++|... |   +++|.++|++||+++|+||+++.... ..   ....+....+.+++|.++  +|++
T Consensus       197 ~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~--~G~p  274 (421)
T PRK09792        197 KQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLA--GGMP  274 (421)
T ss_pred             CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhc--CCCc
Confidence            4688999998899999764 5   89999999999999999999864322 11   112233344678999995  3578


Q ss_pred             eeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHH----hCCCcceEec
Q 022194          210 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA----SHPRVKKVNY  279 (301)
Q Consensus       210 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~----~~~~v~~v~~  279 (301)
                      .|++++++ .+.+.+.......+...++..+++++..++.+.  +..++..+..+++.+.|+    ++|.+..+..
T Consensus       275 igav~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG  349 (421)
T PRK09792        275 LSGVVGNA-NIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPAIAAVRG  349 (421)
T ss_pred             eEEEEEcH-HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCCcceecc
Confidence            89998864 444433322333445567777776655555442  233344444444555443    3555544444

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.65  E-value=8.7e-15  Score=132.57  Aligned_cols=264  Identities=14%  Similarity=0.141  Sum_probs=162.1

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcC--CCceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDK--ADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~   85 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+.  ...  ++.. ..+...++.+.|.+++.  .+.+.+++||++|+.+
T Consensus        82 ~~ylD~~~g~~~~~lGH~~p~v~~Ai~-~ql~~--l~~--~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~  156 (459)
T PRK11522         82 QEFIDCLGGFGIFNVGHRNPVVVSAVQ-NQLAK--QPL--HSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEA  156 (459)
T ss_pred             CEEEECCcCHHhhhcCCCCHHHHHHHH-HHHhh--Ccc--cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHH
Confidence            478898644  4568877766665432 22221  111  1122 35668888999988864  3467888999999864


Q ss_pred             HHhccC-----C-CCeEEEcCCCCccHHHHHhhhcccC---------CcEEEEecCCCHHHHHhhcC------CCceEEE
Q 022194           86 VTHLLG-----T-GEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIG------PWTKLVW  144 (301)
Q Consensus        86 ~~~~~~-----~-g~~Vlv~~~~y~~~~~~~~~~~~~~---------g~~~~~~~~~d~~~l~~~l~------~~~~~v~  144 (301)
                      .+.+.+     + ..+|+.....||+............         .-.+..++..|.+++++.+.      +++.+|+
T Consensus       157 AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavI  236 (459)
T PRK11522        157 ALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVI  236 (459)
T ss_pred             HHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEE
Confidence            444322     1 3468888999999753321111110         11233455557888877764      3578999


Q ss_pred             EeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-cccc---CccCCCCcEEEecccccccCCCCceeeEEEEc
Q 022194          145 VESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (301)
Q Consensus       145 i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~  216 (301)
                      ++......|.+.|    ++++.++|++||+++|+||++.. |..+   .....|....+.+++|.+++. -+..|.++++
T Consensus       237 vEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggG-~~Pigav~~~  315 (459)
T PRK11522        237 LEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGG-VMPIGATIAT  315 (459)
T ss_pred             EecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEechhhhCC-CccceeEEEc
Confidence            9988888888876    99999999999999999999852 2222   122234333344799999652 1235666666


Q ss_pred             chhHHHHHHH--hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh----CC-CcceEecCC
Q 022194          217 GERLAKELYF--LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HP-RVKKVNYAG  281 (301)
Q Consensus       217 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~----~~-~v~~v~~p~  281 (301)
                      ++ +.+.+..  ..+..+.+-+|..+++++..++.+.  +..++..++.+++++.|++    +| .+..|+..|
T Consensus       316 ~~-i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~G  388 (459)
T PRK11522        316 EE-VFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKG  388 (459)
T ss_pred             HH-HHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEece
Confidence            44 4443321  1222333447888888877777653  3456667777777777764    44 344455444

>PLN02880 tyrosine decarboxylase

Probab=99.65  E-value=1.2e-14  Score=132.51  Aligned_cols=215  Identities=18%  Similarity=0.217  Sum_probs=143.6

Q ss_pred             HHHHHHHHHhhcCCCc---------eEEecchHHHH-HHHHhc----cC-------CCCeEEEcCCCCccHHHHHhhhcc
Q 022194           57 RDALESLLAKLDKADR---------ALCFTSGMAAL-AAVTHL----LG-------TGEEIVAGDDLYGGTDRLLSRVTP  115 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~---------~i~~~sG~~ai-~~~~~~----~~-------~g~~Vlv~~~~y~~~~~~~~~~~~  115 (301)
                      ..++.+++++++|.++         .+++++||++. .++...    ++       +.-.|++++-.|++..    +.+.
T Consensus       124 E~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~----Kaa~  199 (490)
T PLN02880        124 EMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQ----KACQ  199 (490)
T ss_pred             HHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHH----HHHH
Confidence            6677799999998764         56777778775 333221    11       1224667888888886    5555


Q ss_pred             cCCcE---EEEecCC-------CHHHHHhhcCC------CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcC
Q 022194          116 KTGVV---VKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM  179 (301)
Q Consensus       116 ~~g~~---~~~~~~~-------d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~  179 (301)
                      ..|+.   ++.++.+       |++.|++++.+      .+.+|+.+..+..+|.+.|+++|+++|++||+|++||.+|+
T Consensus       200 ~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~g  279 (490)
T PLN02880        200 IAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYA  279 (490)
T ss_pred             HcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhH
Confidence            66652   3444432       78888888852      35677778888999999999999999999999999999999


Q ss_pred             CccccCc------cC-CCCcEEEecccccccCCCCceeeEEEEcchhHH-HHHHH----hhhh----------cCCCC--
Q 022194          180 SPVLSRP------LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYF----LQNA----------EGSGL--  235 (301)
Q Consensus       180 ~~~~~~~------~~-~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~-~~~~~----~~~~----------~~~~~--  235 (301)
                      .+....+      .. .++|.++.++|||+..|.+  .|+++.++.... +.+..    +...          ..+++  
T Consensus       280 g~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~--~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~  357 (490)
T PLN02880        280 GSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFD--CSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPL  357 (490)
T ss_pred             HHHHhCHHHHHHhcCchhcCEEEECchhhcCCCcc--EEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCC
Confidence            7754321      11 3589999999999988866  588887754321 21110    0000          00011  


Q ss_pred             ----CHHhHHHHHc--ccccHHHHHHHHHHHHHHHHHHHHhCCCcceE
Q 022194          236 ----APFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKV  277 (301)
Q Consensus       236 ----~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v  277 (301)
                          .....|..++  +.+.+.+++++..+.++++.+.|++.++++.+
T Consensus       358 ~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~  405 (490)
T PLN02880        358 GRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVV  405 (490)
T ss_pred             CCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence                1233443433  44557788888889999999999887765443

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.65  E-value=8.7e-15  Score=129.32  Aligned_cols=265  Identities=15%  Similarity=0.136  Sum_probs=167.3

Q ss_pred             ceeeecCC--CCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEecchHHHHHH
Q 022194           11 TLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~--~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~~   85 (301)
                      ..+|||.+  ..--+|..+|.++.+.. .+.+........|.  -.+...++.+.|.+...   .+.+++.+||++|+.+
T Consensus        56 ~~ylDf~sgi~v~~~GH~hP~Vv~Av~-~q~~~~~h~~~~~~--~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~  132 (447)
T COG0160          56 NEYLDFLSGIAVLNLGHNHPRVVEAVK-RQLAKLNHTHTRDL--YYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEA  132 (447)
T ss_pred             CEEEEcccCcchhccCCCCHHHHHHHH-HHHHHhhcccCCcc--cchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHH
Confidence            47888874  23347876665555432 22221111111111  12557788888888764   3468889999999964


Q ss_pred             HHhc---cCCCCeEEEcCCCCccHHHHHhhh----------cccCCcEEEEecCC-----------------CHHHHHhh
Q 022194           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRV----------TPKTGVVVKRVNTC-----------------DLDEVASA  135 (301)
Q Consensus        86 ~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~----------~~~~g~~~~~~~~~-----------------d~~~l~~~  135 (301)
                      .+.+   ...+..|+.+..+||+.....-.+          .....-.+..++..                 ..+.++..
T Consensus       133 AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~  212 (447)
T COG0160         133 AIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERA  212 (447)
T ss_pred             HHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHH
Confidence            4443   445678999999999875332111          11111124444422                 12334443


Q ss_pred             cC------CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC----CccccCccCCCCcEEEeccccc
Q 022194          136 IG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLSRPLELGADIVMHSATKF  201 (301)
Q Consensus       136 l~------~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~----~~~~~~~~~~~~di~~~S~sK~  201 (301)
                      +.      .++.+++++......|.+.+    ++++.++|++||+++|+||++.    +|.++.....|....+.+++|.
T Consensus       213 i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~  292 (447)
T COG0160         213 LFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKS  292 (447)
T ss_pred             HHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEeccc
Confidence            32      36889999999998888864    8999999999999999999986    3455555566666666669999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHH----hCCCcc
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA----SHPRVK  275 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~----~~~~v~  275 (301)
                      +++  |+..+.++.+++ +.. +.......++.-++.++++++..++.+.  ...++..+.-+++++.|.    ++|.|.
T Consensus       293 ig~--G~Pl~avv~r~e-i~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~Ig  368 (447)
T COG0160         293 LGG--GLPLSAVVGRAE-IMD-WPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIG  368 (447)
T ss_pred             ccC--CCceeEEeccHH-hcc-cCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCcee
Confidence            965  778899988754 444 4444444456678888888888877653  244445555555555554    356666


Q ss_pred             eEecCCC
Q 022194          276 KVNYAGL  282 (301)
Q Consensus       276 ~v~~p~~  282 (301)
                      .|+.-|+
T Consensus       369 dVRG~Gl  375 (447)
T COG0160         369 DVRGLGL  375 (447)
T ss_pred             cccccce
Confidence            6666554

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.65  E-value=6.9e-15  Score=132.34  Aligned_cols=266  Identities=13%  Similarity=0.088  Sum_probs=159.3

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC---CceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~---~~~i~~~sG~~ai~~   85 (301)
                      .+++||.++  +--+|..++.+..+.. .+.+  +........+.++...++.+.|.+.+..   +.+++++||++|+.+
T Consensus        40 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~ql~--~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~  116 (425)
T PRK07495         40 RRYIDFAAGIAVVNTGHRHPRVIAAVK-AQLD--RFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVEN  116 (425)
T ss_pred             CEEEEccccHHhhccCCCCHHHHHHHH-HHHh--hccCcccCccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHH
Confidence            468888533  2247887666555432 2211  1111111122445678888999888742   468888999999864


Q ss_pred             HHhc---cCCCCeEEEcCCCCccHHHHHhhhcc-----cCC-----cEEEEecCC----------CHHHHHhhcC-----
Q 022194           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----KTG-----VVVKRVNTC----------DLDEVASAIG-----  137 (301)
Q Consensus        86 ~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~-----~~g-----~~~~~~~~~----------d~~~l~~~l~-----  137 (301)
                      .+.+   .....+|+.....||+.......+..     ..+     ..+..++..          .++.+++.+.     
T Consensus       117 AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~  196 (425)
T PRK07495        117 AVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDP  196 (425)
T ss_pred             HHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCC
Confidence            4433   33456799889999997533211100     000     122233322          1445566653     


Q ss_pred             CCceEEEEeCCCCCccccc-c---HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCCCCcEEEecccccccCCCCce
Q 022194          138 PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELGADIVMHSATKFIAGHSDVM  209 (301)
Q Consensus       138 ~~~~~v~i~~~~np~G~~~-~---l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~~~di~~~S~sK~~~g~~g~~  209 (301)
                      +++++|+++.....+|... |   +++|.++|++||+++|+||++... ...   .....+....+.+++|.+++  |++
T Consensus       197 ~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~--G~p  274 (425)
T PRK07495        197 QRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAG--GFP  274 (425)
T ss_pred             CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcC--Ccc
Confidence            4688999987776677553 2   899999999999999999998632 111   12234566678889999953  577


Q ss_pred             eeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh----CCCcceEecCCC
Q 022194          210 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGL  282 (301)
Q Consensus       210 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~----~~~v~~v~~p~~  282 (301)
                      .|++++++ .+.+.+.......+...++..++++...++.+.  +..++..+..+++++.|++    +|.+..++..|+
T Consensus       275 igav~~~~-~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl  352 (425)
T PRK07495        275 LAAVTGRA-EIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEIADIRGPGF  352 (425)
T ss_pred             ceEEEEcH-HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCce
Confidence            89998875 454443332333445667777777766666653  2345555555566666553    455555555553

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.65  E-value=1.5e-14  Score=130.64  Aligned_cols=232  Identities=13%  Similarity=0.107  Sum_probs=140.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccC-CCCchHHHHHHHHHhhcCC---CceEEecchHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKA---DRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~~~---~~~i~~~sG~~ai~   84 (301)
                      ..++||.++  +.-+|..++.+..+.. .+.+  . ..+.+.. .+++...++.+.+.+..+.   +.+++++||++|+.
T Consensus        41 ~~~lD~~~g~~~~~lGh~~~~i~~a~~-~~~~--~-~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e  116 (425)
T PRK08088         41 REYLDFAGGIAVLNTGHLHPKVVAAVE-AQLK--K-LSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVE  116 (425)
T ss_pred             CEEEEcCCchhhcCCCCCCHHHHHHHH-HHHh--h-CCCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHH
Confidence            467888532  2237776555554322 1111  1 1122222 2456667888888887653   47889999998774


Q ss_pred             HHHhc---cCCCCeEEEcCCCCccHHHHHhhhccc-----CC-------cEEEEecCC--------CHHHHHhhcC----
Q 022194           85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK-----TG-------VVVKRVNTC--------DLDEVASAIG----  137 (301)
Q Consensus        85 ~~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~-----~g-------~~~~~~~~~--------d~~~l~~~l~----  137 (301)
                      ..+.+   ...+..|+...++||+........-..     .+       +....++.+        +++.+++.+.    
T Consensus       117 ~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~  196 (425)
T PRK08088        117 NAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAA  196 (425)
T ss_pred             HHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccC
Confidence            33222   333456777799999986543222110     01       111111111        1456777764    


Q ss_pred             -CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccc-cC---ccCCCCcEEEecccccccCCCCc
Q 022194          138 -PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVL-SR---PLELGADIVMHSATKFIAGHSDV  208 (301)
Q Consensus       138 -~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~-~~---~~~~~~di~~~S~sK~~~g~~g~  208 (301)
                       +++++|+++......|.+.+    +++|.++|++||+++|+||+|+.... ..   ....+.+..+.||||.++  +|+
T Consensus       197 ~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~--~G~  274 (425)
T PRK08088        197 PEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIA--GGF  274 (425)
T ss_pred             CCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEecccc--CCC
Confidence             46788888877665566654    89999999999999999999874222 11   113355677899999995  468


Q ss_pred             eeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc
Q 022194          209 MAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (301)
Q Consensus       209 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (301)
                      +.|+++++. .+.+.+...........++..+.++...++.
T Consensus       275 rig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~  314 (425)
T PRK08088        275 PLAGVTGRA-EVMDAIAPGGLGGTYAGNPIACAAALAVLKV  314 (425)
T ss_pred             cceeeEecH-HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            999999874 4555444333444455677777776666554

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.64  E-value=8.1e-15  Score=131.99  Aligned_cols=254  Identities=12%  Similarity=0.073  Sum_probs=154.9

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~~   85 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+  +.....+..+.++...++.+.|.++..   .+.+.+++||++|+.+
T Consensus        40 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~ql~--~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~  116 (421)
T PRK06777         40 REYIDFAAGIAVLNTGHRHPKVVAAVR-QQLD--QFTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVEN  116 (421)
T ss_pred             CEEEEcccCHHhhccCCCCHHHHHHHH-HHHh--hcccccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHH
Confidence            478888533  2347877666554432 2211  112122222244567788888888764   3578889999999864


Q ss_pred             HHhc---cCCCCeEEEcCCCCccHHHHHhhhccc---C--C-----cEEEEecCC----------CHHHHHhhcC-----
Q 022194           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK---T--G-----VVVKRVNTC----------DLDEVASAIG-----  137 (301)
Q Consensus        86 ~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~---~--g-----~~~~~~~~~----------d~~~l~~~l~-----  137 (301)
                      .+++   .....+|+.....||+.......+...   .  +     -.+..++..          +++.+++.+.     
T Consensus       117 AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~  196 (421)
T PRK06777        117 AVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAP  196 (421)
T ss_pred             HHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCC
Confidence            4443   334567998999999986442211110   0  0     001111111          2556676663     


Q ss_pred             CCceEEEEeCCCCCcccc-cc---HHHHHHHHHHcCCEEEEeCCcCCccc-c---CccCCCCcEEEecccccccCCCCce
Q 022194          138 PWTKLVWVESPTNPRQQI-CD---IRKIAEMAHAHGALLLVDNSIMSPVL-S---RPLELGADIVMHSATKFIAGHSDVM  209 (301)
Q Consensus       138 ~~~~~v~i~~~~np~G~~-~~---l~~l~~l~~~~~~~li~D~~~~~~~~-~---~~~~~~~di~~~S~sK~~~g~~g~~  209 (301)
                      +++.+|+++...+..|.. .+   +++|.++|++||+++|+||++..... .   .....+....+.+++|.++  +|++
T Consensus       197 ~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~--~G~p  274 (421)
T PRK06777        197 DQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLG--GGMP  274 (421)
T ss_pred             CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhc--CCCc
Confidence            467899999888877864 33   99999999999999999999873211 1   1122333333457999995  4688


Q ss_pred             eeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          210 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       210 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      .|++++++ .+.+.+.......+...++..+++++..++.++  +..++..++.+++.+.|++
T Consensus       275 igav~~~~-~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~  336 (421)
T PRK06777        275 ISAVVGRA-EVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEK  336 (421)
T ss_pred             eEEEEEcH-HHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            99999874 455544333333445567777777777776542  3455666666777777765

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.64  E-value=1.2e-14  Score=131.52  Aligned_cols=266  Identities=14%  Similarity=0.107  Sum_probs=158.1

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC---CceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~---~~~i~~~sG~~ai~~   85 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+  .........+.++...++.+.|++.+..   +.+.+++||++|+.+
T Consensus        42 ~~ylD~~~g~~~~~lGH~~p~v~~Ai~-~ql~--~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~  118 (445)
T PRK08593         42 KTYIDLLASASSQNVGHAPPRVVEAIK-AQAD--KFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDG  118 (445)
T ss_pred             CEEEECCccHHhhcCCCCCHHHHHHHH-HHHH--hccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHH
Confidence            368888533  3458886555444432 2211  1111111112456688899999998742   357777999999864


Q ss_pred             HHhc---cCCCCeEEEcCCCCccHHHHHhhhcc-------cCC---cEEEEecCC----------C-------HHHHHhh
Q 022194           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-------KTG---VVVKRVNTC----------D-------LDEVASA  135 (301)
Q Consensus        86 ~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~-------~~g---~~~~~~~~~----------d-------~~~l~~~  135 (301)
                      .+++   .....+|+..+..||+.......+..       ..+   ..+..++..          +       ++.+++.
T Consensus       119 AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  198 (445)
T PRK08593        119 IIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEM  198 (445)
T ss_pred             HHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHH
Confidence            4443   33356788889999997532211111       000   112222211          1       1334443


Q ss_pred             c-----CCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CccccC---ccCCCCcEEEecccccc
Q 022194          136 I-----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR---PLELGADIVMHSATKFI  202 (301)
Q Consensus       136 l-----~~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~-~~~~~~---~~~~~~di~~~S~sK~~  202 (301)
                      +     .+++.+|+++......|.+.+    +++|.++|++||+++|+||++. .|..+.   ....+....+.+++|.+
T Consensus       199 ~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l  278 (445)
T PRK08593        199 FEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSL  278 (445)
T ss_pred             HHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccc
Confidence            3     257889999988887888765    9999999999999999999984 322221   12234444455799999


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh----CCCcce
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKK  276 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~----~~~v~~  276 (301)
                      ++  |+++|++++++ .+.+.+......++...++..+++++..++.+.  +..++..++.+++++.|++    ++.+..
T Consensus       279 ~~--G~p~gav~~~~-~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~  355 (445)
T PRK08593        279 AG--GMPMSAIVGRK-EIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGD  355 (445)
T ss_pred             cC--CcccEEEEEcH-HHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence            64  46678888874 455544322333455667777777777776653  3445666666667776654    454444


Q ss_pred             EecCCC
Q 022194          277 VNYAGL  282 (301)
Q Consensus       277 v~~p~~  282 (301)
                      ++..|+
T Consensus       356 vrG~Gl  361 (445)
T PRK08593        356 VRGYGL  361 (445)
T ss_pred             Eeccce
Confidence            444433

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.5e-15  Score=130.39  Aligned_cols=252  Identities=18%  Similarity=0.194  Sum_probs=177.1

Q ss_pred             CccceeeecCCCCCCCCccccCeeecceeecCCCCCCCCcc-c-cCC--CCc-hHHHHHHHHHhhcCCCceEEecchHHH
Q 022194            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYD-Y-TRS--GNP-TRDALESLLAKLDKADRALCFTSGMAA   82 (301)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~-y-~~~--g~~-~~~~l~~~l~~~~~~~~~i~~~sG~~a   82 (301)
                      +-...+||++ +=+|+|++...-..+....  +..+.-... . ++.  |.- ...++++..+++.|.+++++++-|-..
T Consensus       133 G~~~~~lNlg-SYNYLGFa~~~g~ca~~~~--~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~T  209 (519)
T KOG1357|consen  133 GTRSRCLNLG-SYNYLGFAQSVGPCAEASL--KSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFAT  209 (519)
T ss_pred             cceeeeeeec-ccccccccccCCcCChHHH--HHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccc
Confidence            4456899999 8899998865544433211  111111111 1 111  443 378999999999999999999999766


Q ss_pred             HH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC-------------CceEEEEeCC
Q 022194           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-------------WTKLVWVESP  148 (301)
Q Consensus        83 i~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~-------------~~~~v~i~~~  148 (301)
                      .+ .+..++.||.-|+-....|.+..    .-++..|+.++....+|+.++|+.+++             +..+|+++..
T Consensus       210 Ns~~~p~l~~~gsLIiSDelNHaSi~----~GaRLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegi  285 (519)
T KOG1357|consen  210 NSMNIPSLLGKGSLIISDELNHASLI----TGARLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGI  285 (519)
T ss_pred             cccCcceeecCCcceeeccccchhee----ccccccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccc
Confidence            64 66778899876666666665553    567777888888888899888888751             2235566777


Q ss_pred             CCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC----------ccCCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          149 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       149 ~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~----------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      ...-|.+.++.++..++|+|..+++.||+|+.|+.+.          ......|+.+++|.|++++.    +|++.++ +
T Consensus       286 ysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~----GGyiags-k  360 (519)
T KOG1357|consen  286 YSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAA----GGYIAGS-K  360 (519)
T ss_pred             eeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcccc----cceecCc-H
Confidence            7788999999999999999999999999999776642          33345789999999999653    5777776 4


Q ss_pred             hHHHHHHHhh--hhcCCCCCHHhHHHHHccccc---------HHHHHHHHHHHHHHHHHHHHhC
Q 022194          219 RLAKELYFLQ--NAEGSGLAPFDCWICLRGVKT---------MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       219 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+.+.++...  ..+...+++..+...+.+++.         -.+..+++.+|.++++..+++.
T Consensus       361 ~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~  424 (519)
T KOG1357|consen  361 ELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM  424 (519)
T ss_pred             HHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC
Confidence            5555443322  223355666666555555443         3567788999999999988864

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.63  E-value=4.3e-16  Score=132.40  Aligned_cols=217  Identities=25%  Similarity=0.265  Sum_probs=149.4

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      +++...++++.+++++|.+.++++.+||.|. .++..+++|++.|++.++.|-...+. .......|.++..++..    
T Consensus        27 ~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~-ga~~~~~G~~~~~l~~~~~G~  105 (290)
T PF01212_consen   27 EDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDET-GAIEELSGAKLIPLPSDDDGK  105 (290)
T ss_dssp             SSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSST-THHHHHTTCEEEEEBECTGTB
T ss_pred             CChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeecc-chhhHhcCcEEEECCCcccCC
Confidence            4567999999999999999999999999776 47777789999999988865433211 12224478888888754    


Q ss_pred             -CHHHHHhhcCC------CceEEEEeCCCCCc-cccc---cHHHHHHHHHHcCCEEEEeCCcCCc------cccCccCCC
Q 022194          128 -DLDEVASAIGP------WTKLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDNSIMSP------VLSRPLELG  190 (301)
Q Consensus       128 -d~~~l~~~l~~------~~~~v~i~~~~np~-G~~~---~l~~l~~l~~~~~~~li~D~~~~~~------~~~~~~~~~  190 (301)
                       |++++++.+..      ++++|++++++|.. |.++   ++++|.++||++|+.++.|.+...-      ........+
T Consensus       106 l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~  185 (290)
T PF01212_consen  106 LTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAG  185 (290)
T ss_dssp             B-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhh
Confidence             68888888863      58899999999964 6665   4788999999999999999995321      111222357


Q ss_pred             CcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCC--CHHhHH------HHHcccccHHHHHHHHHHHHH
Q 022194          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCW------ICLRGVKTMALRVEKQQDNAQ  262 (301)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~l~~~~~~~~~~~~~~~  262 (301)
                      +|.+..|++|.++.+.   +++++++++.+.+. ..+....+..+  ....+.      ..+..++....+..+..++++
T Consensus       186 ~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~-~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~  261 (290)
T PF01212_consen  186 ADSVSFGGTKNGGAPG---GAVLAGNKEFIAKA-RRQRKRLGGGMRQAGVLAAAELYQFAALRALELWLERARHANAMAK  261 (290)
T ss_dssp             SSEEEEETTSTT-SSS---EEEEEESHHHHHHH-HHHHHHHTHHHHHTTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHH
T ss_pred             CCEEEEEEEccccccc---ceEEEechHHHHHH-HHHHHHhccCeeecceeeeechhhHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999986653   57777775534333 22233333211  112222      445555655667788888899


Q ss_pred             HHHHHHHhCCCc
Q 022194          263 KIAEFLASHPRV  274 (301)
Q Consensus       263 ~l~~~l~~~~~v  274 (301)
                      ++.+.|+..+..
T Consensus       262 ~La~~l~~~~~~  273 (290)
T PF01212_consen  262 RLAAGLEALGGV  273 (290)
T ss_dssp             CHHHCHHEECEE
T ss_pred             HHHHHHHHCCCc
Confidence            999999886643

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.63  E-value=1.9e-14  Score=131.68  Aligned_cols=264  Identities=14%  Similarity=0.118  Sum_probs=158.9

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccC--CCCchHHHHHHHHHhhcCC---CceEEecchHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTR--SGNPTRDALESLLAKLDKA---DRALCFTSGMAAL   83 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~--~g~~~~~~l~~~l~~~~~~---~~~i~~~sG~~ai   83 (301)
                      .+++||.++  +.++|.. +|.+..+...+.+  + ..+....  ...+...++.+.|.+.+..   +.+++++||++|+
T Consensus        89 ~~ylD~~sg~~~~~lGh~-hp~v~~Av~~ql~--~-~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~  164 (504)
T PLN02760         89 KKYLDALAGLWCTALGGS-EPRLVAAATEQLN--K-LPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEAN  164 (504)
T ss_pred             CEEEEcCcCHHhcccCCC-CHHHHHHHHHHHh--h-ccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHH
Confidence            488999743  7899954 5555544323221  1 1111111  1335578899998888532   3577889999998


Q ss_pred             HHHHhccC--------C-CCeEEEcCCCCccHHHHHhhhcc------cCCc---EEEEecCC----------C-------
Q 022194           84 AAVTHLLG--------T-GEEIVAGDDLYGGTDRLLSRVTP------KTGV---VVKRVNTC----------D-------  128 (301)
Q Consensus        84 ~~~~~~~~--------~-g~~Vlv~~~~y~~~~~~~~~~~~------~~g~---~~~~~~~~----------d-------  128 (301)
                      .+++.+.+        + .++|+..+..||+.......+..      .++.   .+..++..          +       
T Consensus       165 e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  244 (504)
T PLN02760        165 DTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTR  244 (504)
T ss_pred             HHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHH
Confidence            64444331        2 36789889999988532111111      1110   01122210          1       


Q ss_pred             -HHHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCccccC---ccCCCCcEEE
Q 022194          129 -LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR---PLELGADIVM  195 (301)
Q Consensus       129 -~~~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~-~~~~~~~---~~~~~~di~~  195 (301)
                       .+++++.+.    +++.+|+++......|.+.|    +++|.++|++||+++|+||++ +.|..+.   ....|....+
T Consensus       245 ~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDi  324 (504)
T PLN02760        245 LADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDL  324 (504)
T ss_pred             HHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcE
Confidence             134665552    46789999988887888876    999999999999999999998 4443332   2234444556


Q ss_pred             ecccccccCCCCceeeEEEEcchhHHHHHHHh-------hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHH
Q 022194          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAE  266 (301)
Q Consensus       196 ~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~  266 (301)
                      .+++|.++|. .+..|.+++++ .+.+.+...       .+..+.+.+|..++++++.++.+.  +..++..++.++|++
T Consensus       325 vtlgK~lggG-~~PigAv~~~~-~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~  402 (504)
T PLN02760        325 VSLAKALSSA-YMPIGAVLVSP-EISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQD  402 (504)
T ss_pred             EEecccccCC-ccccceEeecH-HHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            6799999652 12356677664 455544321       233345567888888888887764  345666667777777


Q ss_pred             HHHh---CCCcceEecC
Q 022194          267 FLAS---HPRVKKVNYA  280 (301)
Q Consensus       267 ~l~~---~~~v~~v~~p  280 (301)
                      .|++   ++.+..++.-
T Consensus       403 ~L~~l~~~~~v~~vrG~  419 (504)
T PLN02760        403 GIKAFSGSPIIGEIRGT  419 (504)
T ss_pred             HHHHHhcCCCeeeEEeC
Confidence            7654   4444434433

>PLN02590 probable tyrosine decarboxylase

Probab=99.63  E-value=3.1e-14  Score=130.19  Aligned_cols=218  Identities=17%  Similarity=0.186  Sum_probs=147.1

Q ss_pred             HHHHHHHHHhhcCCCc---------eEEecchHHHH-HHHHhc----cC-------CCCeEEEcCCCCccHHHHHhhhcc
Q 022194           57 RDALESLLAKLDKADR---------ALCFTSGMAAL-AAVTHL----LG-------TGEEIVAGDDLYGGTDRLLSRVTP  115 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~---------~i~~~sG~~ai-~~~~~~----~~-------~g~~Vlv~~~~y~~~~~~~~~~~~  115 (301)
                      ..++.+++++++|.++         .+++++||+|. .++...    .+       +.-.|++++..|+++.    +.+.
T Consensus       172 E~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~----KAa~  247 (539)
T PLN02590        172 EIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFR----KACL  247 (539)
T ss_pred             HHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHH----HHHH
Confidence            5667789999998763         57788888775 333221    11       2224567788888776    4445


Q ss_pred             cCCc---EEEEecCC-------CHHHHHhhcCC------CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcC
Q 022194          116 KTGV---VVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM  179 (301)
Q Consensus       116 ~~g~---~~~~~~~~-------d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~  179 (301)
                      ..|+   .++.++.+       |++.|++++.+      .+.+|+.+..+..+|.+.|+++|+++|++||+|++||.+|+
T Consensus       248 ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~G  327 (539)
T PLN02590        248 IGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYA  327 (539)
T ss_pred             HcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchh
Confidence            5554   34444432       78899888852      35677888888999999999999999999999999999998


Q ss_pred             CccccCcc----C---CCCcEEEecccccccCCCCceeeEEEEcchh-HHHHHH----Hhhhh------------cC---
Q 022194          180 SPVLSRPL----E---LGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELY----FLQNA------------EG---  232 (301)
Q Consensus       180 ~~~~~~~~----~---~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~-~~~~~~----~~~~~------------~~---  232 (301)
                      ......+.    .   ..+|-+..++||++..|.+  .|+++.+++. +.+.+.    .+...            .+   
T Consensus       328 G~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~--cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~l  405 (539)
T PLN02590        328 GNACICPEYRKFIDGIENADSFNMNAHKWLFANQT--CSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISL  405 (539)
T ss_pred             hhhhcChhhHHHhcCCccCCEEEECchhhcCcCcC--EEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCC
Confidence            76643221    1   2479999999999988765  6888887653 222211    11000            00   


Q ss_pred             -CCCCHHhHHHHHcc--cccHHHHHHHHHHHHHHHHHHHHhCCCcceEecC
Q 022194          233 -SGLAPFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  280 (301)
Q Consensus       233 -~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p  280 (301)
                       ........|+.++.  .+-+.+.+++..+.++++.+.|++.+.++.+..|
T Consensus       406 sRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~  456 (539)
T PLN02590        406 SRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTR  456 (539)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence             11122335555443  3457889999999999999999998776544433

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.63  E-value=8.1e-15  Score=139.84  Aligned_cols=207  Identities=20%  Similarity=0.204  Sum_probs=145.8

Q ss_pred             HHHHHHHHHhhcCCCceEEe-cchHHHHH-HHHh--c-c-----CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           57 RDALESLLAKLDKADRALCF-TSGMAALA-AVTH--L-L-----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~-~sG~~ai~-~~~~--~-~-----~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      ..++++++++++|.+.+-+. ++|+.+-. .++.  . .     ...++|+++...|+...    ..+...|++++.++.
T Consensus       532 i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP----asa~~~G~~Vv~V~~  607 (939)
T TIGR00461       532 IAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP----ASAAMAGMQVVPVNC  607 (939)
T ss_pred             HHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH----HHHHHCCCEEEEecc
Confidence            77899999999999965454 44454432 2222  2 1     23467999999998776    446677889999886


Q ss_pred             C-----CHHHHHhhcC---CCceEEEEeCCCCCcccccc-HHHHHHHHHHcCCEEEEeCCcCC--ccccCccCCCCcEEE
Q 022194          127 C-----DLDEVASAIG---PWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMS--PVLSRPLELGADIVM  195 (301)
Q Consensus       127 ~-----d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~-l~~l~~l~~~~~~~li~D~~~~~--~~~~~~~~~~~di~~  195 (301)
                      +     |+++|+++++   +++++|++++|+| +|.+.+ +++|+++||++|.++++|.++..  .....+.+.|+|+++
T Consensus       608 d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~  686 (939)
T TIGR00461       608 DQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCH  686 (939)
T ss_pred             CCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEE
Confidence            4     8999999997   4899999999999 799977 99999999999999999999865  334567788999999


Q ss_pred             eccccccc-----CCCCceeeEEEEcchhHHHHHHH--h-------------hhhcCCCCCH----HhHHHHHc--cccc
Q 022194          196 HSATKFIA-----GHSDVMAGVLAVKGERLAKELYF--L-------------QNAEGSGLAP----FDCWICLR--GVKT  249 (301)
Q Consensus       196 ~S~sK~~~-----g~~g~~~g~~~~~~~~~~~~~~~--~-------------~~~~~~~~~~----~~~~~~~~--~l~~  249 (301)
                      +|.||+|+     |++|  .|++.+++. +...+..  .             ...+......    ...|..+.  +-+-
T Consensus       687 ~s~HKtf~~P~G~GGPg--~G~i~vr~~-L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~G  763 (939)
T TIGR00461       687 LNLHKTFCIPHGGGGPG--MGPIGVKSH-LIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEG  763 (939)
T ss_pred             ecCCccCCCCCCCCCCC--eEEEEEhhh-chhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHH
Confidence            99999888     4444  589988853 3222210  0             0000001111    12222222  3334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC
Q 022194          250 MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       250 ~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.+..+....+++++.+.|++.
T Consensus       764 L~~~a~~ailnAnYl~~rL~~~  785 (939)
T TIGR00461       764 LPKASVVAILNANYMATRLKDH  785 (939)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Confidence            5666778888999999999874

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK07046 aminotransferase; Validated

Probab=99.62  E-value=5.8e-14  Score=127.14  Aligned_cols=248  Identities=16%  Similarity=0.068  Sum_probs=156.1

Q ss_pred             eeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHhc
Q 022194           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL   89 (301)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~~   89 (301)
                      +++||.++  ..-+|..++.+..+.. .+.+  . .. .+ ....+...++.+.|.+.++.+.+.+++||++|....+++
T Consensus        76 ~yiD~~~g~g~~~lGh~~p~i~~Av~-~q~~--~-~~-~~-~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~Alrl  149 (453)
T PRK07046         76 RYDDFCLGDTGAMFGHSPAPVARALA-EQAR--R-GL-TT-MLPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRW  149 (453)
T ss_pred             EEEEecccccccccCCCCHHHHHHHH-HHHH--h-CC-CC-CCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHH
Confidence            57777433  2336776665554432 2211  1 11 11 113455777888888888878899999999998644443


Q ss_pred             ---cCCCCeEEEcCCCCccHHHHHhhhc---------ccCC------cEEEEecCCCHHHHHhhcC-CCceEEEEeCCCC
Q 022194           90 ---LGTGEEIVAGDDLYGGTDRLLSRVT---------PKTG------VVVKRVNTCDLDEVASAIG-PWTKLVWVESPTN  150 (301)
Q Consensus        90 ---~~~g~~Vlv~~~~y~~~~~~~~~~~---------~~~g------~~~~~~~~~d~~~l~~~l~-~~~~~v~i~~~~n  150 (301)
                         ...+++|+.....||+.........         ...+      ..+..++..|++.+++.+. +++.+|+++....
T Consensus       150 AR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g  229 (453)
T PRK07046        150 ARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMT  229 (453)
T ss_pred             HHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCC
Confidence               3346789998999999743211110         0001      1234455668999999885 5788999998877


Q ss_pred             Ccccccc----HHHHHHHHHHcCCEEEEeCCcC----CccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHH
Q 022194          151 PRQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (301)
Q Consensus       151 p~G~~~~----l~~l~~l~~~~~~~li~D~~~~----~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~  222 (301)
                      ..|.+.+    +++|.++|++||+++|+||+++    .+...  ..++....+.+++|.++|  |+..|+++++++ +.+
T Consensus       230 ~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~--~~~gv~PDi~t~gK~lgg--G~Pi~av~g~~~-i~~  304 (453)
T PRK07046        230 NIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT--RAHGLEPDFLVVGKPIAG--GVPCAVYGFSAE-LAE  304 (453)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh--HHhCCCccceeehhhhcC--CCcceeeeehHH-HHH
Confidence            7777764    8999999999999999999985    22221  223444444459999975  466788888754 444


Q ss_pred             HHHHh---------hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          223 ELYFL---------QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       223 ~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      .+...         ....+.+.++..+++.+..++.+.  +..++..+..+++++.|++
T Consensus       305 ~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~  363 (453)
T PRK07046        305 RAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRA  363 (453)
T ss_pred             HHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            43311         111234457777777777776552  3456666666677776653

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.62  E-value=2.9e-15  Score=131.10  Aligned_cols=263  Identities=19%  Similarity=0.149  Sum_probs=160.5

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccc-cCCCCchHHHHHHHHHhhc--CCCceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDY-TRSGNPTRDALESLLAKLD--KADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y-~~~g~~~~~~l~~~l~~~~--~~~~~i~~~sG~~ai~~   85 (301)
                      .+++||.+.  +.-+|..++++..+..-....    ..+.. .....+...++.+.|.+.+  +.+.+.+.+||++|+..
T Consensus        16 ~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~----~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~   91 (339)
T PF00202_consen   16 REYLDFMSGYGSVNLGHNHPEIAEAIAEQANK----LNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEA   91 (339)
T ss_dssp             EEEEESSHHHHTTTT-BT-HHHHHHHHHHHHH----CSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHH
T ss_pred             CEEEECCCCccceecCCCccccchhHHHHhhh----cccccccceeccchhhhhhhhhhccccccceeeeccCchHHHHH
Confidence            468888533  456888877766544211111    11111 2223456889999999999  45678889999999864


Q ss_pred             HHhccC---------CCCeEEEcCCCCccHHHHH---------hhhcccCCcEEEEecCCCHHH----------HH----
Q 022194           86 VTHLLG---------TGEEIVAGDDLYGGTDRLL---------SRVTPKTGVVVKRVNTCDLDE----------VA----  133 (301)
Q Consensus        86 ~~~~~~---------~g~~Vlv~~~~y~~~~~~~---------~~~~~~~g~~~~~~~~~d~~~----------l~----  133 (301)
                      ++.+.+         ...+|+....+||+.....         ..........+..++..+...          ++    
T Consensus        92 Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  171 (339)
T PF00202_consen   92 ALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIA  171 (339)
T ss_dssp             HHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHH
Confidence            443322         4578999999999854321         111222223445666665544          22    


Q ss_pred             hhcCCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCC--CCcEEEeccccccc
Q 022194          134 SAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLEL--GADIVMHSATKFIA  203 (301)
Q Consensus       134 ~~l~~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~--~~di~~~S~sK~~~  203 (301)
                      +.-.+++.+|+++......|...+    +++|.++|++||+++|+||+++.. -.+   .....  ..|+++  ++|.++
T Consensus       172 ~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~--~gK~l~  249 (339)
T PF00202_consen  172 ALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVT--FGKGLG  249 (339)
T ss_dssp             HHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEE--EEGGGG
T ss_pred             hhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccc--cccchh
Confidence            222467899999988877776643    899999999999999999998743 222   11222  356666  679997


Q ss_pred             CCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHHh----CCCcceE
Q 022194          204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKV  277 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~----~~~v~~v  277 (301)
                      +.  +..+.++.++ .+.+........++..-++..+.++.+.++.+.+  ..++..+..+++.+.|++    ++.+..+
T Consensus       250 gG--~p~sav~~~~-~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~~~i~~v  326 (339)
T PF00202_consen  250 GG--LPISAVLGSE-EIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLRELAARYPLIGEV  326 (339)
T ss_dssp             TT--SSEEEEEEEH-HHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred             hh--hhcccccccc-hhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            63  6678888775 4444333333445566678888888777776543  345555555566665553    3666666


Q ss_pred             ecCCC
Q 022194          278 NYAGL  282 (301)
Q Consensus       278 ~~p~~  282 (301)
                      +.-|+
T Consensus       327 rg~Gl  331 (339)
T PF00202_consen  327 RGIGL  331 (339)
T ss_dssp             EEETT
T ss_pred             eeeCe
Confidence            65543

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.61  E-value=8.2e-14  Score=125.75  Aligned_cols=251  Identities=15%  Similarity=0.139  Sum_probs=160.3

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~~~~~i~~~sG~~ai~~~~   87 (301)
                      ..+|||.++  +.-+|..++.+..+.. .+.+  ....  + ...++...++.+.|.+.. +.+.+.+++||++|+.+.+
T Consensus        53 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~q~~--~~~~--~-~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~Al  126 (428)
T PRK12389         53 NKYIDYLAAYGPIITGHAHPHITKAIT-EAAE--NGVL--Y-GTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTI  126 (428)
T ss_pred             CEEEEccccccccccCCCCHHHHHHHH-HHHH--hCCc--c-CCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH
Confidence            467887433  3347877776655432 2211  1111  1 124566788888888776 4567888999999986444


Q ss_pred             hc---cCCCCeEEEcCCCCccHHHHHhhhcc----------cCC------cEEEEecCCCHHHHHhhcC---CCceEEEE
Q 022194           88 HL---LGTGEEIVAGDDLYGGTDRLLSRVTP----------KTG------VVVKRVNTCDLDEVASAIG---PWTKLVWV  145 (301)
Q Consensus        88 ~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~----------~~g------~~~~~~~~~d~~~l~~~l~---~~~~~v~i  145 (301)
                      .+   .....+|+.....||+..........          ..+      -.+..++..|.+.+++.+.   +++.+|++
T Consensus       127 klAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~  206 (428)
T PRK12389        127 RVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLV  206 (428)
T ss_pred             HHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEE
Confidence            43   33457899889999997533211110          011      1344555568888888875   46889999


Q ss_pred             eCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCcccc---CccCCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       146 ~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      +......|.+.|    +++|.++|++||+++|+||++...-..   .....|....+.+++|.++|  |+..|.+++++ 
T Consensus       207 EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt~gK~lgg--G~Pi~av~~~~-  283 (428)
T PRK12389        207 EPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLTALGKIIGG--GLPIGAYGGRK-  283 (428)
T ss_pred             eCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCeeeechhhcC--CCceeEEeEHH-
Confidence            988888888876    999999999999999999998743111   11123444444579999965  35567777764 


Q ss_pred             hHHHHHHH---hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          219 RLAKELYF---LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       219 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      .+.+.+..   .....+...+|..+++++..++.+.  +..++..++.+++++.|++
T Consensus       284 ~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~  340 (428)
T PRK12389        284 DIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILE  340 (428)
T ss_pred             HHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            45554421   1122345567888888877777653  3556677777777777764

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.61  E-value=3.5e-14  Score=128.67  Aligned_cols=254  Identities=16%  Similarity=0.174  Sum_probs=151.0

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC---CceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~---~~~i~~~sG~~ai~~   85 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+  +...+.+.....+...++.+.|.+.+..   +.+++++||++|+.+
T Consensus        56 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~q~~--~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~  132 (443)
T PRK06058         56 NRLIDLGSGIAVTSVGNSAPRVVEAVR-EQVA--RFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVEN  132 (443)
T ss_pred             CEEEEcCcchhhhccCCCCHHHHHHHH-HHHH--hccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHH
Confidence            478888633  3458877766665532 2211  1111122112345578899999888742   467889999999864


Q ss_pred             HHhc---cCCCCeEEEcCCCCccHHHHHhhhcc-----cCC-----cEEEEec----CCC---------------HHHHH
Q 022194           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----KTG-----VVVKRVN----TCD---------------LDEVA  133 (301)
Q Consensus        86 ~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~-----~~g-----~~~~~~~----~~d---------------~~~l~  133 (301)
                      .+.+   ...+++|+...++||+.......+..     ..+     -.+..++    ..+               .+.++
T Consensus       133 AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  212 (443)
T PRK06058        133 AVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIE  212 (443)
T ss_pred             HHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHH
Confidence            4442   33457899999999998643211111     000     0111111    111               22344


Q ss_pred             hhcC-CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCcc-cc---CccCCCCcEEEecccccccC
Q 022194          134 SAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPV-LS---RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       134 ~~l~-~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~-~~---~~~~~~~di~~~S~sK~~~g  204 (301)
                      +.+. +++.+|+++......|.+.+    +++|.++|++||+++|.||++.... ..   .....+....+.+++|.+++
T Consensus       213 ~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~  292 (443)
T PRK06058        213 KQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAG  292 (443)
T ss_pred             HhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccC
Confidence            4443 57888888866655566643    9999999999999999999986321 11   11223333333447899963


Q ss_pred             CCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          205 HSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                        |++.|++++++ .+.+.+.......+.+.++..++++++.++.+.  +..++..+..+++.+.|++
T Consensus       293 --G~Pi~av~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~  357 (443)
T PRK06058        293 --GLPLSAVTGRA-EIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRA  357 (443)
T ss_pred             --CCccEEEEEcH-HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence              57788888875 454544333334455667888888877777653  2345555556666666654

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.61  E-value=1.7e-14  Score=127.30  Aligned_cols=220  Identities=21%  Similarity=0.246  Sum_probs=146.0

Q ss_pred             HHHHHHHHHhhcCCC---------ceEEecchHHHH-HHHHhc----c----CCC-----C-eEEEcCCCCccHHHHHhh
Q 022194           57 RDALESLLAKLDKAD---------RALCFTSGMAAL-AAVTHL----L----GTG-----E-EIVAGDDLYGGTDRLLSR  112 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---------~~i~~~sG~~ai-~~~~~~----~----~~g-----~-~Vlv~~~~y~~~~~~~~~  112 (301)
                      ..++.+++++++|.+         ..+++++||+++ .++...    .    ..|     + .|++++-.|++..    +
T Consensus        81 E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~----K  156 (373)
T PF00282_consen   81 EREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIE----K  156 (373)
T ss_dssp             HHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHH----H
T ss_pred             hHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHH----H
Confidence            455668888888876         367888888776 343322    1    011     2 4677777888775    7


Q ss_pred             hcccCCcEEEEecCC-----CHHHHHhhcC----C--CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCc
Q 022194          113 VTPKTGVVVKRVNTC-----DLDEVASAIG----P--WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP  181 (301)
Q Consensus       113 ~~~~~g~~~~~~~~~-----d~~~l~~~l~----~--~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~  181 (301)
                      .+...|+.++.++.+     |.+++++++.    +  .+-+|+.+..++.+|.+.|+++|+++|+++++|+++|.+|+..
T Consensus       157 aa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~  236 (373)
T PF00282_consen  157 AARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGS  236 (373)
T ss_dssp             HHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGG
T ss_pred             hcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeeccccccc
Confidence            777888888888865     6788887765    2  2446777888899999999999999999999999999999874


Q ss_pred             cccCc----cC---CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHH-----Hhhh----------h--cCCCC--
Q 022194          182 VLSRP----LE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-----FLQN----------A--EGSGL--  235 (301)
Q Consensus       182 ~~~~~----~~---~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~-----~~~~----------~--~~~~~--  235 (301)
                      .+..+    ..   ..+|-+..++||+++.|.+  .|+++.+++.......     .+.+          .  .+...  
T Consensus       237 ~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~--~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR  314 (373)
T PF00282_consen  237 ALLSPEYRHLLFGIERADSITIDPHKWLGVPYG--CGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR  314 (373)
T ss_dssp             GGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS---EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG
T ss_pred             ccccccccccccccccccccccchhhhhcCCcc--ceeEEeecccchHHHhccChhhhcccccccccccccccccccccc
Confidence            43211    11   2479999999999987765  6888888876543211     0110          0  00011  


Q ss_pred             --CHHhHHHHHc--ccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCC
Q 022194          236 --APFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  282 (301)
Q Consensus       236 --~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~  282 (301)
                        .....|..++  +.+.+.+++++..+.++++.+.|++.+.++.+..|.+
T Consensus       315 ~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~  365 (373)
T PF00282_consen  315 RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDL  365 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSS
T ss_pred             cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCc
Confidence              1123444443  3455788999999999999999999998766555543

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.60  E-value=7.3e-14  Score=130.13  Aligned_cols=207  Identities=12%  Similarity=0.086  Sum_probs=143.1

Q ss_pred             HHHHHHHHHhhcCCCceEEecchH-HHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------
Q 022194           57 RDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~~sG~-~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------  127 (301)
                      ..+.++.+++.||+++..++++|| .++ .++++.+++||.|++.+++|.+..    ..+...|+..+++.+.       
T Consensus       197 i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~----~aLilsga~PVYl~P~~n~~Gi~  272 (713)
T PRK15399        197 HLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLA----HLLMMSDVVPIWLKPTRNALGIL  272 (713)
T ss_pred             HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeeEEecccccccCCc
Confidence            788999999999999999999996 556 578889999999999999998886    4556778888888753       


Q ss_pred             ---C-----HHHHHhhcCC-----CceEEEEeCCCCCccccccHHHHHHHHHHcCCEE-EEeCCcCCccc-----c--Cc
Q 022194          128 ---D-----LDEVASAIGP-----WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPVL-----S--RP  186 (301)
Q Consensus       128 ---d-----~~~l~~~l~~-----~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~l-i~D~~~~~~~~-----~--~~  186 (301)
                         +     .+.+++++.+     +++++++++|++ .|.+.++++|+++|   |+.+ ++||+|+....     .  .+
T Consensus       273 g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sa  348 (713)
T PRK15399        273 GGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY-DGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSG  348 (713)
T ss_pred             CCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC-CceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcCh
Confidence               3     3888888863     236899999977 89999999999999   6666 69999974321     1  11


Q ss_pred             cCC--CCcEE---EecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHc----ccc--cHHHHHH
Q 022194          187 LEL--GADIV---MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR----GVK--TMALRVE  255 (301)
Q Consensus       187 ~~~--~~di~---~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~--~~~~~~~  255 (301)
                      ...  ++|.+   +.|.||.+.+..  +++++..+...-.+++........++.+.....+.+.    -++  .=.+..+
T Consensus       349 m~~~~~aD~~i~~tQStHKtL~alT--QaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~  426 (713)
T PRK15399        349 MSGERVPGKVIFETQSTHKMLAAFS--QASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLIN  426 (713)
T ss_pred             hhCCCCCCeeeeeeeehhccccccc--hheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            112  46766   999999997765  5788888654222333333333333333322222111    111  1123446


Q ss_pred             HHHHHHHHHHHHHHhCCC
Q 022194          256 KQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~  273 (301)
                      +..+.+..+++.+.+...
T Consensus       427 ~~i~~a~~fR~~l~~~~~  444 (713)
T PRK15399        427 RSVERALHFRKEVQRLRE  444 (713)
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            667777778888776543

>PRK06541 hypothetical protein; Provisional

Probab=99.60  E-value=4.2e-14  Score=128.36  Aligned_cols=253  Identities=18%  Similarity=0.147  Sum_probs=154.1

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+  +........+.++...++.+.|.+...  .+.+.+++||++|+.+.
T Consensus        52 ~~ylD~~~g~~~~~lGh~~p~v~~Av~-~q~~--~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~A  128 (460)
T PRK06541         52 KRYLDGLAGLFVVQVGHGRAELAEAAA-KQAG--TLAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESA  128 (460)
T ss_pred             CEEEECCccHHhccCCCCCHHHHHHHH-HHHh--hCcCccccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHH
Confidence            478888633  3448888766655532 2211  111111112345667888888988764  35788889999998644


Q ss_pred             HhccC---------CCCeEEEcCCCCccHHHHHhhhccc------CC---cEEEEecC----------CC--------HH
Q 022194           87 THLLG---------TGEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNT----------CD--------LD  130 (301)
Q Consensus        87 ~~~~~---------~g~~Vlv~~~~y~~~~~~~~~~~~~------~g---~~~~~~~~----------~d--------~~  130 (301)
                      +.+.+         ...+|+.....||+...........      .+   ..+..++.          ++        ++
T Consensus       129 lklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (460)
T PRK06541        129 WKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAAD  208 (460)
T ss_pred             HHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHH
Confidence            33311         2468999899999886432111100      00   01111211          11        25


Q ss_pred             HHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCccccC---ccCCC--CcEEEe
Q 022194          131 EVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR---PLELG--ADIVMH  196 (301)
Q Consensus       131 ~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~-~~~~~~~---~~~~~--~di~~~  196 (301)
                      .+++.+.    +++.+|+++...++.|.+.+    +++|.++|++||+++|+||++ +.|....   ....+  .|++  
T Consensus       209 ~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDiv--  286 (460)
T PRK06541        209 RIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDII--  286 (460)
T ss_pred             HHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEE--
Confidence            6676664    45778888887888999877    999999999999999999998 4443322   11233  4555  


Q ss_pred             cccccccCCCCc-eeeEEEEcchhHHHHHHHh----hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHH
Q 022194          197 SATKFIAGHSDV-MAGVLAVKGERLAKELYFL----QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       197 S~sK~~~g~~g~-~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~  269 (301)
                      +++|.+++  |. ..|+++++++. .+.+...    ....+...++..++++++.++.+.  ...++..++.+++.+.|+
T Consensus       287 t~gK~l~~--G~~pigav~~~~~i-~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~  363 (460)
T PRK06541        287 TCAKGITS--GYSPLGAMIASDRL-FEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLE  363 (460)
T ss_pred             EecccccC--CccceeEEEEcHHH-HHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            59999964  33 46777777544 3433211    122344557777777777777652  345677777788888886


Q ss_pred             hC
Q 022194          270 SH  271 (301)
Q Consensus       270 ~~  271 (301)
                      ++
T Consensus       364 ~l  365 (460)
T PRK06541        364 KL  365 (460)
T ss_pred             Hh
Confidence            64

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.60  E-value=4.3e-14  Score=126.92  Aligned_cols=252  Identities=13%  Similarity=0.075  Sum_probs=146.5

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCcccc-CCCCchHHHHHHHHHhhc--C--CC-ceEEe-cchHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLD--K--AD-RALCF-TSGMA   81 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~--~--~~-~~i~~-~sG~~   81 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+  + ..+... ...++...++.+.|.+..  .  .. ...++ +||++
T Consensus        35 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~ql~--~-~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGse  110 (412)
T TIGR02407        35 KEYIDFFAGAGALNYGHNNPKLKQALI-DYLA--D-DGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTN  110 (412)
T ss_pred             CEEEEcccchhhccCCCCCHHHHHHHH-HHHh--h-ccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchH
Confidence            478888533  2347887777665532 2211  1 111111 123455778888888864  1  22 34454 79999


Q ss_pred             HHHHHHhc---cCCCCeEEEcCCCCccHHHHHhhhc------ccCC---cEEEEecC--------CCHHHHHhhcC----
Q 022194           82 ALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVT------PKTG---VVVKRVNT--------CDLDEVASAIG----  137 (301)
Q Consensus        82 ai~~~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~------~~~g---~~~~~~~~--------~d~~~l~~~l~----  137 (301)
                      |+.+.+.+   ...+.+|+.....||+.........      ...+   ..+..++.        ++++.+++.+.    
T Consensus       111 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~  190 (412)
T TIGR02407       111 AVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSS  190 (412)
T ss_pred             HHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccC
Confidence            98644443   3345689999999999864432211      1111   12333443        23666777775    


Q ss_pred             --CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-Ccc---ccCccCCCCcEEEecccccccCCCC
Q 022194          138 --PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPV---LSRPLELGADIVMHSATKFIAGHSD  207 (301)
Q Consensus       138 --~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~-~~~---~~~~~~~~~di~~~S~sK~~~g~~g  207 (301)
                        +++.+|+++...++.|.+.+    +++|.++|++||+++|+||+++ .|.   .......+.+..+.+++|+++ +.|
T Consensus       191 ~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~lg-~~G  269 (412)
T TIGR02407       191 GVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSIS-GYG  269 (412)
T ss_pred             CCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhcc-CCc
Confidence              35789999988888888642    8999999999999999999986 222   111122333333445889994 435


Q ss_pred             ceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc-H--HHHHHHHHHHHHHHHHHHH
Q 022194          208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-M--ALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       208 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~~~~~l~~~l~  269 (301)
                      ++.|+++.+++ + ..+.......+.+.++..+.++...++. +  .+..++..+..+++++.|+
T Consensus       270 ~pigav~~~~~-~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~  332 (412)
T TIGR02407       270 LPLALTLIKPE-L-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLD  332 (412)
T ss_pred             cceeEEEEchh-h-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            78899998754 3 3222222333344556655555555553 2  2233444455555555554

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.60  E-value=3.4e-14  Score=128.87  Aligned_cols=250  Identities=14%  Similarity=0.135  Sum_probs=155.0

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~~~~~i~~~sG~~ai~~~~   87 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+  ...  .+. ...+...++.+.|.+.. +.+.+.+++||++|+...+
T Consensus        99 ~~yiD~~~g~g~~~lGh~~p~v~~av~-~ql~--~~~--~~~-~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~Al  172 (474)
T PLN02482         99 NEYIDYVGSWGPAIIGHADDEVLAALA-ETMK--KGT--SFG-APCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVL  172 (474)
T ss_pred             CEEEEecccccccccCCCCHHHHHHHH-HHHh--hCC--CCC-CCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHH
Confidence            467887533  2337877666554432 2211  111  111 12344677888888776 4567888999999986544


Q ss_pred             hc---cCCCCeEEEcCCCCccHHHHHhhh----------cccCCc------EEEEecCCCHHHHHhhcC---CCceEEEE
Q 022194           88 HL---LGTGEEIVAGDDLYGGTDRLLSRV----------TPKTGV------VVKRVNTCDLDEVASAIG---PWTKLVWV  145 (301)
Q Consensus        88 ~~---~~~g~~Vlv~~~~y~~~~~~~~~~----------~~~~g~------~~~~~~~~d~~~l~~~l~---~~~~~v~i  145 (301)
                      ++   ...+++|+.....||+....+...          ....++      .+..++.+|++.+++.+.   +++.+|++
T Consensus       173 klAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~  252 (474)
T PLN02482        173 RLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVIL  252 (474)
T ss_pred             HHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEE
Confidence            43   334578898899999975321100          001111      234455568888888875   46889999


Q ss_pred             eCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCcccc----CccCCCCcEEEecccccccCCCCceeeEEEEcc
Q 022194          146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (301)
Q Consensus       146 ~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~  217 (301)
                      +......|.+.|    +++|.++|++||+++|+||++. |...    ....+|....+.+++|.++|  |+..|.+++++
T Consensus       253 Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g~~ga~~~~gv~PDi~t~gK~lgg--G~Pigav~g~~  329 (474)
T PLN02482        253 EPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIAYGGAQEYFGITPDLTTLGKVIGG--GLPVGAYGGRR  329 (474)
T ss_pred             CCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecCcchHhHHhCCCCCEEEecchhhC--CCceEEEEEcH
Confidence            988887888765    7789999999999999999985 3221    11123444445678999964  35567777664


Q ss_pred             hhHHHHHHHhh---hhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          218 ERLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       218 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                       ++++.+....   ...+...++..+++.+..++.+.  +..++..++.+++++.|++
T Consensus       330 -ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~  386 (474)
T PLN02482        330 -EIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILE  386 (474)
T ss_pred             -HHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence             5555443211   12223346666777766666553  3556777777777777764

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.59  E-value=3.7e-14  Score=125.22  Aligned_cols=209  Identities=11%  Similarity=0.062  Sum_probs=133.4

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEe-cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHH
Q 022194           56 TRDALESLLAKLDKAD---RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD  130 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~---~~i~~-~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~  130 (301)
                      ..++.++.++++++.+   +++++ +|||.++. ++..++.+ +.+++....|..-...+.......+ ++..++.+.-+
T Consensus        42 ~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~~  119 (361)
T TIGR01366        42 LVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPGS  119 (361)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccC-CceEEecCCCC
Confidence            3788899999999973   34554 44788886 55566643 3444545555444333223222223 44555433233


Q ss_pred             HHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCcee
Q 022194          131 EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA  210 (301)
Q Consensus       131 ~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~  210 (301)
                      .++..+.+++++|.+++..|.||...|+++|   +|++|+++++|.+.+.+...-..+. +|++++|.+|++++|+|  .
T Consensus       120 ~~~~~~~~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~-~D~~~~s~~K~lg~~~G--l  193 (361)
T TIGR01366       120 APEPQADPGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE-TDVYYFAPQKNFASDGG--L  193 (361)
T ss_pred             CCCCccCCCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHHH-CCEEEEEchhhcCCCCc--e
Confidence            4444566789999999999999999999988   5899999999999999887644443 89999999999977766  4


Q ss_pred             eEEEEcchhHHHHHHHh-------------h----h----hcCCCCCHHhHHHHHccccc------HHHHHHHHHHHHHH
Q 022194          211 GVLAVKGERLAKELYFL-------------Q----N----AEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQK  263 (301)
Q Consensus       211 g~~~~~~~~~~~~~~~~-------------~----~----~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~  263 (301)
                      ++++.+++.+ +++...             .    .    ...++.+....+.+.++++.      ++.+.++..+.+++
T Consensus       194 ~~~~~s~~~~-~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~  272 (361)
T TIGR01366       194 WLAIMSPAAL-ERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSR  272 (361)
T ss_pred             EEEEECHHHH-hhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            6666665544 222210             0    0    11233333333333344433      34445677777888


Q ss_pred             HHHHHHhCCC
Q 022194          264 IAEFLASHPR  273 (301)
Q Consensus       264 l~~~l~~~~~  273 (301)
                      +.+.+++.+.
T Consensus       273 l~~~l~~~~~  282 (361)
T TIGR01366       273 LYSWAQERPY  282 (361)
T ss_pred             HHHHHHhCCC
Confidence            8888887664

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.59  E-value=4.3e-14  Score=127.88  Aligned_cols=265  Identities=15%  Similarity=0.138  Sum_probs=155.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+  +........+.++...++.+.|.+.+.  .+.+.+++||++|+.+.
T Consensus        49 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~ql~--~l~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~A  125 (445)
T PRK09221         49 RKILDGTAGLWCCNAGHGRPEIVEAVA-RQAA--TLDYAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTA  125 (445)
T ss_pred             CEEEEccccHhhccCCCCCHHHHHHHH-HHHH--hccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHH
Confidence            367887533  2347876666555432 2211  111111111245667788889988873  45788899999998644


Q ss_pred             HhccC---------CCCeEEEcCCCCccHHHHHhhhc---------ccCCcEEEEecCC------------------CHH
Q 022194           87 THLLG---------TGEEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNTC------------------DLD  130 (301)
Q Consensus        87 ~~~~~---------~g~~Vlv~~~~y~~~~~~~~~~~---------~~~g~~~~~~~~~------------------d~~  130 (301)
                      +.+.+         ...+|+.....||+.....-...         ......+..++..                  ..+
T Consensus       126 lklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (445)
T PRK09221        126 LKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELAD  205 (445)
T ss_pred             HHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHH
Confidence            33211         23579988999998742211110         0000111122211                  124


Q ss_pred             HHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CccccC---ccCCCCcEEEecc
Q 022194          131 EVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR---PLELGADIVMHSA  198 (301)
Q Consensus       131 ~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~-~~~~~~---~~~~~~di~~~S~  198 (301)
                      ++++.+.    +++.+|+++......|.+.+    +++|.++|++||+++|+||+++ .|..+.   ....+.+..+.++
T Consensus       206 ~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~  285 (445)
T PRK09221        206 DLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITF  285 (445)
T ss_pred             HHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEe
Confidence            5666553    56889999988888888877    9999999999999999999984 332221   1223443334569


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHH-------hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHH
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~  269 (301)
                      +|.+++. .+..|.+++++ .+.+.+..       ..+.++.+.++..+++++..++.+.  ...++..+..+++++.|+
T Consensus       286 gK~l~gG-~~Pi~av~~~~-~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~  363 (445)
T PRK09221        286 AKGLTNG-AIPMGAVIASD-EIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVH  363 (445)
T ss_pred             ccccccC-cccceeeEEcH-HHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            9999642 23356676664 44443321       1122345567777777777777653  345667777777777776


Q ss_pred             hC---CCcceEecC
Q 022194          270 SH---PRVKKVNYA  280 (301)
Q Consensus       270 ~~---~~v~~v~~p  280 (301)
                      ++   +.+..++..
T Consensus       364 ~l~~~~~v~~vrg~  377 (445)
T PRK09221        364 SLKGLPHVIDIRNI  377 (445)
T ss_pred             hhccCCCEEEEecC
Confidence            54   444444433

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.59  E-value=5.3e-14  Score=127.70  Aligned_cols=263  Identities=19%  Similarity=0.184  Sum_probs=155.9

Q ss_pred             ceeeecCCCCCC--CCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC--CceEEecchHHHHHHH
Q 022194           11 TLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~~~~--~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~~~   86 (301)
                      .++|||. ++.+  +|..++. +..+...+.+  . ..+....+.++...++.+.|++++..  +.+.+.+||++|+.++
T Consensus        72 ~~ylD~~-g~~~~~lGh~~p~-v~~Ai~~ql~--~-~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~A  146 (459)
T PRK06082         72 KKYMDFH-GNNVHQLGYGHPH-VIEKVKEQMA--K-LPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMA  146 (459)
T ss_pred             CEEEEcc-cHhhcccCCCCHH-HHHHHHHHHH--h-CCCccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHH
Confidence            4789987 4455  7875544 4443322221  1 11222233556688999999998853  4677889999998655


Q ss_pred             Hhcc---CCCCeEEEcCCCCccHHHHHhhhccc------CC---cEEEEec--------CCC--------HHHHHhhcC-
Q 022194           87 THLL---GTGEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVN--------TCD--------LDEVASAIG-  137 (301)
Q Consensus        87 ~~~~---~~g~~Vlv~~~~y~~~~~~~~~~~~~------~g---~~~~~~~--------~~d--------~~~l~~~l~-  137 (301)
                      +.+.   ..+.+|+.....||+.....-.+...      ++   -.+..++        ..+        ++.+++.+. 
T Consensus       147 lklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  226 (459)
T PRK06082        147 LKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK  226 (459)
T ss_pred             HHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc
Confidence            5543   34578888888898875221111100      00   0111222        111        245666664 


Q ss_pred             -CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCCC--CcEEEecccccccCCCC
Q 022194          138 -PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELG--ADIVMHSATKFIAGHSD  207 (301)
Q Consensus       138 -~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~~--~di~~~S~sK~~~g~~g  207 (301)
                       +++.+|+++...+..+...|   +++|.++|++||+++|+||+++.. ..+   .....|  .|+++  ++|.++| +.
T Consensus       227 ~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~g-G~  303 (459)
T PRK06082        227 EGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGG-GL  303 (459)
T ss_pred             CCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEE--ecccccC-CC
Confidence             46788999887765333444   899999999999999999997632 222   112234  46555  9999965 22


Q ss_pred             ceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh----CCCcceEecCC
Q 022194          208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKVNYAG  281 (301)
Q Consensus       208 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~----~~~v~~v~~p~  281 (301)
                      +..|.++.+++ +..........++...++..++++++.++.+.  +..++..++.+++.+.|++    ++.+..++..|
T Consensus       304 ~P~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~G  382 (459)
T PRK06082        304 VPIAAMITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIG  382 (459)
T ss_pred             CcceEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeecc
Confidence            34677777644 43322111111345567888888777777653  3456666777777777754    45555555554


Q ss_pred             C
Q 022194          282 L  282 (301)
Q Consensus       282 ~  282 (301)
                      +
T Consensus       383 l  383 (459)
T PRK06082        383 L  383 (459)
T ss_pred             c
Confidence            4

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.59  E-value=7.7e-14  Score=126.36  Aligned_cols=262  Identities=17%  Similarity=0.126  Sum_probs=153.8

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCcccc-CCCCchHHHHHHHHHhhcCC----CceEEe-cchHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDKA----DRALCF-TSGMAA   82 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~~~----~~~i~~-~sG~~a   82 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+   ...+... .+.++...++.+.|.+++..    ...+++ +||++|
T Consensus        39 ~~ylD~~~g~~~~~lGh~~p~i~~ai~-~q~~---~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA  114 (442)
T TIGR00709        39 KEYLDFLAGAGTLALGHNHPNMKQKIL-DYLQ---SGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADA  114 (442)
T ss_pred             CEEEEccccHhhhcCCCCCHHHHHHHH-HHHH---hccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHH
Confidence            468888533  3347877666555432 2211   1111111 12456688899999988742    244454 799999


Q ss_pred             HHHHHhc---cCCCCeEEEcCCCCccHHHHHhhhccc----CC-----cEEEEecCCC-------------H----HHHH
Q 022194           83 LAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK----TG-----VVVKRVNTCD-------------L----DEVA  133 (301)
Q Consensus        83 i~~~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~----~g-----~~~~~~~~~d-------------~----~~l~  133 (301)
                      +.+.+++   ...+.+|+.....||+...........    .+     ..+..++..+             .    +.++
T Consensus       115 ~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (442)
T TIGR00709       115 VEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFE  194 (442)
T ss_pred             HHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHH
Confidence            8644443   334567999999999986443222210    00     1122222211             1    1123


Q ss_pred             hhcC------CCceEEEEeCCCCCccccc-c---HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCCC--CcEEEec
Q 022194          134 SAIG------PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELG--ADIVMHS  197 (301)
Q Consensus       134 ~~l~------~~~~~v~i~~~~np~G~~~-~---l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~~--~di~~~S  197 (301)
                      +.+.      +++.+|+++...+..|.+. |   +++|.++|++||+++|.||++... ...   .....+  .|+++  
T Consensus       195 ~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--  272 (442)
T TIGR00709       195 NFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--  272 (442)
T ss_pred             HHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--
Confidence            3332      4688999998887777764 2   899999999999999999998632 222   112234  45555  


Q ss_pred             ccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh----C
Q 022194          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----H  271 (301)
Q Consensus       198 ~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~----~  271 (301)
                      ++|.+++  |++.|+++.+++ + ..........+.+.++..+++++..++.+.  +..++..++.+++.+.|++    +
T Consensus       273 ~gK~l~~--G~Pigav~~~~~-~-~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~  348 (442)
T TIGR00709       273 MSKAVGG--GLPLAVLLIAPE-F-DAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEH  348 (442)
T ss_pred             EcccccC--CcccEEEEEchH-H-hccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999965  578899988765 4 322222233445567777777777776643  3345555556666666653    5


Q ss_pred             CCcceEecCCC
Q 022194          272 PRVKKVNYAGL  282 (301)
Q Consensus       272 ~~v~~v~~p~~  282 (301)
                      +.+..++..|+
T Consensus       349 ~~v~~vrG~Gl  359 (442)
T TIGR00709       349 PCIGNVRGRGL  359 (442)
T ss_pred             CCeeeeeccce
Confidence            55555555443

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.58  E-value=7.3e-14  Score=135.34  Aligned_cols=209  Identities=25%  Similarity=0.283  Sum_probs=141.1

Q ss_pred             HHHHHHHHHhhcCCCceEEecchH-HHH-HHHHhc----cCCCC----eEEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           57 RDALESLLAKLDKADRALCFTSGM-AAL-AAVTHL----LGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~~sG~-~ai-~~~~~~----~~~g~----~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      ..++++++++++|.+++-+..+|+ .+. ..++.+    .++|+    +|++++..|++..    ..+...|++++.++.
T Consensus       544 i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp----~sa~~~G~~vv~v~~  619 (954)
T PRK05367        544 IDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNP----ASAVMAGMKVVVVAC  619 (954)
T ss_pred             HHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhH----HHHHHCCCEEEEECC
Confidence            678889999999999877776554 443 222222    24554    6999999998886    345667899999886


Q ss_pred             C-----CHHHHHhhcCC---CceEEEEeCCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCc--cccCccCCCCcEEE
Q 022194          127 C-----DLDEVASAIGP---WTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSP--VLSRPLELGADIVM  195 (301)
Q Consensus       127 ~-----d~~~l~~~l~~---~~~~v~i~~~~np~G~~-~~l~~l~~l~~~~~~~li~D~~~~~~--~~~~~~~~~~di~~  195 (301)
                      +     |++++++++.+   ++.+|++++|++. |.+ .|+++|+++||++|+++++|.++..+  .+..+.+.|+|+++
T Consensus       620 d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~-G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~  698 (954)
T PRK05367        620 DENGNIDLDDLRAKAEEHADNLAAIMITYPSTH-GVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSH  698 (954)
T ss_pred             CCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCC-eeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEE
Confidence            4     78999998864   5788888998885 554 78999999999999999999999744  23456678999999


Q ss_pred             ecccccccCCCCc---eeeEEEEcchhHHHHHHHhh-----h--hcCCCC-CHH-h------HHH--HHcccccHHHHHH
Q 022194          196 HSATKFIAGHSDV---MAGVLAVKGERLAKELYFLQ-----N--AEGSGL-APF-D------CWI--CLRGVKTMALRVE  255 (301)
Q Consensus       196 ~S~sK~~~g~~g~---~~g~~~~~~~~~~~~~~~~~-----~--~~~~~~-~~~-~------~~~--~~~~l~~~~~~~~  255 (301)
                      .|+||+|+.|-|.   -.|++.+++ .+...+....     .  ..+... ++. +      ++.  ...+.+-+.+..+
T Consensus       699 ~s~HK~f~~P~G~GGPg~G~l~vr~-~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~  777 (954)
T PRK05367        699 LNLHKTFCIPHGGGGPGVGPIGVKA-HLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATE  777 (954)
T ss_pred             ecCcccCCCCcCCCCCceEEEeecc-cccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence            9999998644321   147777763 3322211110     0  001111 111 0      111  1223334566667


Q ss_pred             HHHHHHHHHHHHHHhC
Q 022194          256 KQQDNAQKIAEFLASH  271 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~  271 (301)
                      ....+++++.+.|++.
T Consensus       778 ~~~~~A~Yl~~~L~~~  793 (954)
T PRK05367        778 VAILNANYIAKRLKDH  793 (954)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            7778899999999775

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.58  E-value=5.3e-14  Score=126.92  Aligned_cols=253  Identities=15%  Similarity=0.070  Sum_probs=145.5

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCcccc-CCCCchHHHHHHHHHhhc----CCC-ceEEe-cchHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLD----KAD-RALCF-TSGMA   81 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~----~~~-~~i~~-~sG~~   81 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+  . ..+... ...++...++.+.|.+.+    +.+ ...++ +||++
T Consensus        39 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~ql~--~-~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGse  114 (425)
T PRK09264         39 KEYIDFFAGAGALNYGHNNPVLKQALI-DYLQ--R-DGITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTN  114 (425)
T ss_pred             CEeeecccchhhccCCCCCHHHHHHHH-HHHH--h-cccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHH
Confidence            468888533  2348887666554432 2211  1 111111 123455778888888764    233 34454 69999


Q ss_pred             HHHHHHhc---cCCCCeEEEcCCCCccHHHHHhhhc------ccCC---cEEEEecC--------CCHHHHHhhcC----
Q 022194           82 ALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVT------PKTG---VVVKRVNT--------CDLDEVASAIG----  137 (301)
Q Consensus        82 ai~~~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~------~~~g---~~~~~~~~--------~d~~~l~~~l~----  137 (301)
                      |+.+.+.+   .....+|+.....||+.....-...      ...+   ..+..++.        +|++++++.+.    
T Consensus       115 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~  194 (425)
T PRK09264        115 AVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSS  194 (425)
T ss_pred             HHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccC
Confidence            98644443   3345678988999999753321110      0111   12333443        36677787774    


Q ss_pred             --CCceEEEEeCCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcCCc----cccCccCCCCcEEEecccccccCCCC
Q 022194          138 --PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMSP----VLSRPLELGADIVMHSATKFIAGHSD  207 (301)
Q Consensus       138 --~~~~~v~i~~~~np~G~~~----~l~~l~~l~~~~~~~li~D~~~~~~----~~~~~~~~~~di~~~S~sK~~~g~~g  207 (301)
                        +++.+|+++......|...    .+++|.++|++||+++|+||+++..    ........+.+..+.+++|.++ ++|
T Consensus       195 ~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l~-~~G  273 (425)
T PRK09264        195 GVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSIS-GYG  273 (425)
T ss_pred             CCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEeccccC-CCc
Confidence              2578899998887777654    3999999999999999999998632    1111112233333456889994 446


Q ss_pred             ceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc-cH--HHHHHHHHHHHHHHHHHHHh
Q 022194          208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-TM--ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       208 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~--~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ++.|+++++++ + ..+.......+...++....+.+..++ .+  .+..++..++.+++++.|++
T Consensus       274 ~pigav~~~~~-i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~  337 (425)
T PRK09264        274 LPMALVLIKPE-L-DVWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEE  337 (425)
T ss_pred             cceEEEEEchh-h-hccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            78899988754 3 222211222233445555555555552 22  13445556666666666654

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.58  E-value=4.2e-14  Score=131.71  Aligned_cols=208  Identities=13%  Similarity=0.075  Sum_probs=144.1

Q ss_pred             HHHHHHHHHhhcCCCceEEecchH-HHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------
Q 022194           57 RDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~~sG~-~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------  127 (301)
                      ..+.++.+++.||+++..++++|| .++ .++++++++||.|++.+++|-+..    ..+...|+..+++.+.       
T Consensus       197 i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~----haLilsga~PVYl~P~rn~~Gi~  272 (714)
T PRK15400        197 HKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLT----HLMMMSDVTPIYFRPTRNAYGIL  272 (714)
T ss_pred             HHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeEEEecccccccCCc
Confidence            788999999999999999999996 556 577889999999999999998876    4556778888887643       


Q ss_pred             ---C-----HHHHHhhcCC--Cce---EEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-------Ccc
Q 022194          128 ---D-----LDEVASAIGP--WTK---LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-------RPL  187 (301)
Q Consensus       128 ---d-----~~~l~~~l~~--~~~---~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-------~~~  187 (301)
                         +     .+.+++++.+  +.+   .+++++|++ .|.+.++++|+++|+.++  +++||+|+.....       .+.
T Consensus       273 g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam  349 (714)
T PRK15400        273 GGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY-DGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGM  349 (714)
T ss_pred             cCCCccccCHHHHHHHHHhCccccCccEEEEECCCC-ccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChh
Confidence               3     7888888863  223   789999977 899999999999999887  6999999753211       122


Q ss_pred             CCCC---c--EEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHc----ccc--cHHHHHHH
Q 022194          188 ELGA---D--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR----GVK--TMALRVEK  256 (301)
Q Consensus       188 ~~~~---d--i~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~--~~~~~~~~  256 (301)
                      ..|+   |  +++.|.||.+.+..  +++++..+...-.+++........++.+.....+.+.    -++  .=.+..++
T Consensus       350 ~~ga~~~~~i~vtQStHKtL~alT--QaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~  427 (714)
T PRK15400        350 SGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLING  427 (714)
T ss_pred             hcCCCCCCceEEEEchhhcccchh--HHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            3345   4  99999999987654  4666666543212333333333333333222211111    111  11334566


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 022194          257 QQDNAQKIAEFLASHPR  273 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~  273 (301)
                      ..+.+..+++.|.+.+.
T Consensus       428 ~i~~a~~~R~~l~~~~~  444 (714)
T PRK15400        428 SIERAIKFRKEIKRLRT  444 (714)
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            77777788888877654

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.58  E-value=1.4e-13  Score=124.36  Aligned_cols=254  Identities=15%  Similarity=0.149  Sum_probs=150.3

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCcccc-CCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~   85 (301)
                      ..++||.++  +.-+|..++.+..+.. .+.+  + -.+... ...++...++.+.|.+++.  .+.+.+++||++|+.+
T Consensus        46 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~ql~--~-l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~  121 (442)
T PRK13360         46 RRVLDGTAGLWCVNAGHGRPEIVEAVR-AQAG--E-LDYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDT  121 (442)
T ss_pred             CEEEECchhHHHhccCCCCHHHHHHHH-HHHH--h-CCCcccCCcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHH
Confidence            367777422  1236776666555432 1111  1 111111 1235667788888888763  4578889999999864


Q ss_pred             HHhccC---------CCCeEEEcCCCCccHHHHHhhhc---------ccCCcEEEEecCC------------------CH
Q 022194           86 VTHLLG---------TGEEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNTC------------------DL  129 (301)
Q Consensus        86 ~~~~~~---------~g~~Vlv~~~~y~~~~~~~~~~~---------~~~g~~~~~~~~~------------------d~  129 (301)
                      .+.+.+         .+.+|+.....||+.....-.+.         ......+..++..                  ..
T Consensus       122 AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  201 (442)
T PRK13360        122 ALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELA  201 (442)
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHH
Confidence            433311         23579999999999742210000         0000111222211                  13


Q ss_pred             HHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCccccCc---cCCCCcEEEec
Q 022194          130 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSRP---LELGADIVMHS  197 (301)
Q Consensus       130 ~~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~-~~~~~~~~---~~~~~di~~~S  197 (301)
                      +++++.+.    +++.+|+++......|...+    +++|.++|++||+++|+||++ +.|..+..   ...+....+.+
T Consensus       202 ~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt  281 (442)
T PRK13360        202 DELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLT  281 (442)
T ss_pred             HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceee
Confidence            46666664    56789999988888888877    999999999999999999998 44433322   22344344457


Q ss_pred             ccccccCCCCceeeEEEEcchhHHHHHHH-------hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHH
Q 022194          198 ATKFIAGHSDVMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFL  268 (301)
Q Consensus       198 ~sK~~~g~~g~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l  268 (301)
                      ++|.+++ +.+..|.+++++ .+.+.+..       ..+.++.+.++..+++++..++.+.  ...++..++.+++++.|
T Consensus       282 ~gK~l~g-G~~P~gav~~~~-~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l  359 (442)
T PRK13360        282 CAKGLTN-GAIPMGAVFVSS-EIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDAL  359 (442)
T ss_pred             eeecccc-CccceEEEEEcH-HHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            9999964 223356666664 44443321       1123345567778888777777653  34466666667777777


Q ss_pred             Hh
Q 022194          269 AS  270 (301)
Q Consensus       269 ~~  270 (301)
                      ++
T Consensus       360 ~~  361 (442)
T PRK13360        360 HS  361 (442)
T ss_pred             HH
Confidence            64

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.58  E-value=3.1e-13  Score=115.94  Aligned_cols=252  Identities=23%  Similarity=0.248  Sum_probs=180.7

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCc-------hHHHHHHHHHhhcCCC--ceEEecchHHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNP-------TRDALESLLAKLDKAD--RALCFTSGMAA   82 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~-------~~~~l~~~l~~~~~~~--~~i~~~sG~~a   82 (301)
                      .+.+|- +..|++..-||++.+.....++    +...|.||..+       ..-+++..++++.|.+  ++-+.-.+|++
T Consensus        75 ~~~sfi-G~GyY~~~~P~vI~rnile~pe----wyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAa  149 (450)
T COG0403          75 VFTSFI-GAGYYDTYTPPVILRNILENPE----WYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAA  149 (450)
T ss_pred             hhhhhc-cCcccCCcCcHHHHHHhhcCcc----ccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHH
Confidence            445555 6789999999999988877777    45567777321       2345667788999988  66677777743


Q ss_pred             ---HHHHHhccCC-CCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcc-cccc
Q 022194           83 ---LAAVTHLLGT-GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ-QICD  157 (301)
Q Consensus        83 ---i~~~~~~~~~-g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G-~~~~  157 (301)
                         +.+..+..+. .++++++...|+.+...+...++..|++++..+.+|.++++++...++.++++++|+. .| ...+
T Consensus       150 AEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~~~~~~~gv~vQyP~~-~G~~~~d  228 (450)
T COG0403         150 AEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESADDGDVFGVLVQYPNT-FGIVEED  228 (450)
T ss_pred             HHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhhhhccccCeEEEEEecCCC-CCccchh
Confidence               3344445443 5899999999999999999999999999999999999999999435889999999997 67 6677


Q ss_pred             HHHHHHHHHHcCCEEEEeC-CcCCccccCccCCCCcEEEecccc-----cccCCCCceeeEEEEcchhHHHH--------
Q 022194          158 IRKIAEMAHAHGALLLVDN-SIMSPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGERLAKE--------  223 (301)
Q Consensus       158 l~~l~~l~~~~~~~li~D~-~~~~~~~~~~~~~~~di~~~S~sK-----~~~g~~g~~~g~~~~~~~~~~~~--------  223 (301)
                      +++|.+.+|++|.++++=. -.+.+.+..|.++|+||++++.+.     .||||   ..|++.++++..++.        
T Consensus       229 ~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGP---hag~fA~~~~~~R~mPGRlVG~S  305 (450)
T COG0403         229 LRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGP---HAGYFAVKDEFKRQMPGRLVGVS  305 (450)
T ss_pred             HHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCc---ceeeeeEhHhHhhcCCCceeeee
Confidence            9999999999998776643 356677888999999999999887     46555   479998876533220        


Q ss_pred             ------------H----HHhhh--hcCCCCCHHh-------HHHHHcccccHHHHHHHHHHHHHHHHHHHHhCC
Q 022194          224 ------------L----YFLQN--AEGSGLAPFD-------CWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       224 ------------~----~~~~~--~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                                  +    ..++.  ...+.++..+       .++...+-+-+.+.-++..+.+.++.+.|++..
T Consensus       306 ~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~  379 (450)
T COG0403         306 VDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIG  379 (450)
T ss_pred             ecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence                        0    00110  1112222211       122223334456666788888999999998654

>PRK12403 putative aminotransferase; Provisional

Probab=99.58  E-value=1.4e-13  Score=125.11  Aligned_cols=264  Identities=18%  Similarity=0.132  Sum_probs=152.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccC--CCCchHHHHHHHHHhhcC--CCceEEecchHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTR--SGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~--~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~   84 (301)
                      .+++||.++  +.-+|..+ |.+..+...+.+  + ..+....  ...+...+++++|++++.  .+.+++++||++|+.
T Consensus        54 ~~ylD~~~g~~~~~lGh~h-p~v~~A~~~q~~--~-~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e  129 (460)
T PRK12403         54 KRYLDGMSGLWCTNLGYGR-KDLAAAAARQME--Q-LPYYNMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANE  129 (460)
T ss_pred             CEEEECchhHHhhcCCCCC-HHHHHHHHHHHH--h-CCCeecccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHH
Confidence            368887432  23489855 555544322221  1 1111111  134558899999999886  457889999999986


Q ss_pred             HHHhcc--------CCCC-eEEEcCCCCccHHHHHhhhccc-----CC---cEEEEecCC-----------------CHH
Q 022194           85 AVTHLL--------GTGE-EIVAGDDLYGGTDRLLSRVTPK-----TG---VVVKRVNTC-----------------DLD  130 (301)
Q Consensus        85 ~~~~~~--------~~g~-~Vlv~~~~y~~~~~~~~~~~~~-----~g---~~~~~~~~~-----------------d~~  130 (301)
                      +.+.+.        ++++ .|+.....||+.....-.+...     .+   -.+..++..                 +.+
T Consensus       130 ~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  209 (460)
T PRK12403        130 VLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAAL  209 (460)
T ss_pred             HHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHH
Confidence            444432        2333 4556667888874321111100     00   012222211                 124


Q ss_pred             HHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-cccc---CccCCC--CcEEEe
Q 022194          131 EVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELG--ADIVMH  196 (301)
Q Consensus       131 ~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~---~~~~~~--~di~~~  196 (301)
                      ++++.+.    +++.+|+++......|.+.+    +++|.++|++||+++|+||+++. |-.+   .....|  .|+++ 
T Consensus       210 ~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~-  288 (460)
T PRK12403        210 QLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS-  288 (460)
T ss_pred             HHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEE-
Confidence            4555542    46788999988887788776    99999999999999999999853 2222   112233  46665 


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHHh----hhhcCCCCCHHhHHHHHcccccHHH--HHHHHH-HHHHHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFL----QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQ-DNAQKIAEFLA  269 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~-~~~~~l~~~l~  269 (301)
                       ++|.++|.- +..|.+++++ .+.+.+...    .+..+.+.+|..++++++.++.+.+  ..++.. ++.+++++.|+
T Consensus       289 -~gK~lggG~-~Piga~v~~~-~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~  365 (460)
T PRK12403        289 -IAKGLTSGY-VPMGGLVLSK-RIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLR  365 (460)
T ss_pred             -Ecccccccc-cceEEEEECH-HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence             999996531 2356666664 455543211    1223455788888888888877642  345554 56666766665


Q ss_pred             ----hCCCcceEecCCC
Q 022194          270 ----SHPRVKKVNYAGL  282 (301)
Q Consensus       270 ----~~~~v~~v~~p~~  282 (301)
                          +++.+..++..|+
T Consensus       366 ~l~~~~~~i~~vrG~Gl  382 (460)
T PRK12403        366 EVFGDHPLVGEVQGAGL  382 (460)
T ss_pred             HHHhcCCCEEeEeecce
Confidence                3555555554443

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.58  E-value=1e-13  Score=126.06  Aligned_cols=253  Identities=13%  Similarity=0.102  Sum_probs=143.6

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC---CceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~---~~~i~~~sG~~ai~~   85 (301)
                      .++|||.++  +--+|..++.+..+.. .+.+  .........+.++...++.+.|.+++..   +.+.+++||++|+.+
T Consensus        54 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~q~~--~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~  130 (451)
T PRK06918         54 NQYIDFAGAIGTINVGHSHPKVKEALH-KQVD--QYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVEN  130 (451)
T ss_pred             CEEEEcCCchhhcCCCCCCHHHHHHHH-HHHH--hccCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHH
Confidence            367888533  2347877665554432 2211  1111111112346688899999988742   467888999999864


Q ss_pred             HHhc---cCCCCeEEEcCCCCccHHHHHhhhccc---C----C---cEEEEecCCC-----------------HHHHHhh
Q 022194           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK---T----G---VVVKRVNTCD-----------------LDEVASA  135 (301)
Q Consensus        86 ~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~---~----g---~~~~~~~~~d-----------------~~~l~~~  135 (301)
                      .+.+   .....+|+.....||+.......+...   .    +   -.+..++..+                 .+.++..
T Consensus       131 AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (451)
T PRK06918        131 AVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNF  210 (451)
T ss_pred             HHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHH
Confidence            4443   334567998899999986432221110   0    0   0112221110                 1223332


Q ss_pred             c----C-CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccc-c---CccCCCCcEEEecccccc
Q 022194          136 I----G-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVL-S---RPLELGADIVMHSATKFI  202 (301)
Q Consensus       136 l----~-~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~-~---~~~~~~~di~~~S~sK~~  202 (301)
                      +    . +++.+|+++......|.+.+    +++|.++|++||+++|+||++..... .   .....+....+.|++|.+
T Consensus       211 ~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l  290 (451)
T PRK06918        211 FISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSL  290 (451)
T ss_pred             HHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhh
Confidence            2    2 46788888876655566543    89999999999999999999864322 1   112234333466899999


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~  269 (301)
                      +  +|++.|++++++ .+.+.+.......+...++..+.++...++.+.  ...++..+..+++.+.|+
T Consensus       291 ~--~G~pig~v~~~~-~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~  356 (451)
T PRK06918        291 G--AGVPISGVIGRK-EIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFE  356 (451)
T ss_pred             c--CCCccEEEEEcH-HHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence            5  468999999875 454544333333445567777777655555431  122333333444444443

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.58  E-value=1.1e-13  Score=125.58  Aligned_cols=251  Identities=14%  Similarity=0.075  Sum_probs=150.1

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC--CceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~~~   86 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+  +.......-...+...++.+.|.+....  +.+.+++||++|+.+.
T Consensus        53 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~-~ql~--~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~A  129 (457)
T PRK05639         53 NVFIDFLAGAAAASTGYSHPKLVKAVQ-EQVA--LIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMA  129 (457)
T ss_pred             CEEEECCcCHHhhccCCCCHHHHHHHH-HHHH--hccccccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHH
Confidence            478888633  3458887777655432 2211  1111111111235577899999888743  4688889999998644


Q ss_pred             Hhc---cCCCCeEEEcCCCCccHHHHHhhhcc-----cCC-----cEEEEecCC-------------CH--------HHH
Q 022194           87 THL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----KTG-----VVVKRVNTC-------------DL--------DEV  132 (301)
Q Consensus        87 ~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~-----~~g-----~~~~~~~~~-------------d~--------~~l  132 (301)
                      +.+   ...+.+|+.....||+.......+..     ..+     -.+..++..             +.        +.+
T Consensus       130 lklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (457)
T PRK05639        130 IKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYL  209 (457)
T ss_pred             HHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHH
Confidence            443   33456788889999997543211111     011     012233321             12        234


Q ss_pred             Hhhc------CCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-cccC---ccCCC--CcEEEe
Q 022194          133 ASAI------GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLSR---PLELG--ADIVMH  196 (301)
Q Consensus       133 ~~~l------~~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~~---~~~~~--~di~~~  196 (301)
                      ++.+      .+++.+|+++......|.+.|    +++|.++|++||+++|+||++... ..+.   ....+  .|+++ 
T Consensus       210 e~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~-  288 (457)
T PRK05639        210 ENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII-  288 (457)
T ss_pred             HHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEE-
Confidence            4443      357899999988877777654    899999999999999999998631 1111   11233  45555 


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                       ++|.+++  |+..|+++++++ +.+ ........+...++..+++++..++.+.  ...++..++.++|++.|++
T Consensus       289 -~gK~l~g--G~pi~av~~~~~-i~~-~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~  359 (457)
T PRK05639        289 -FGKGVAS--GMGLSGVIGRKE-LMD-LTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLE  359 (457)
T ss_pred             -echhhcC--CCcceeEEehHH-HHh-hcCCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence             9999965  344678877754 444 2211223345567777778777777653  3345555566667776654

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.57  E-value=1.9e-13  Score=111.87  Aligned_cols=164  Identities=27%  Similarity=0.373  Sum_probs=130.4

Q ss_pred             HHHHHHHHHhhcCCCceEE---ecchHHHHH-HHHhccCCCCeEE-EcCCCCccHHHHH------hhhcccCCcEEEEec
Q 022194           57 RDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIV-AGDDLYGGTDRLL------SRVTPKTGVVVKRVN  125 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~---~~sG~~ai~-~~~~~~~~g~~Vl-v~~~~y~~~~~~~------~~~~~~~g~~~~~~~  125 (301)
                      |+.|+.-.++.|+++.+++   +-|||+||. ++..+++|||+.+ +....|....+..      ...+..+|+.++-++
T Consensus        67 RdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~  146 (416)
T COG4100          67 RDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVP  146 (416)
T ss_pred             hhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeecc
Confidence            8899999999999997765   579999996 8889999999987 4444566554443      245677888888888


Q ss_pred             CC-----CHHHHHhhcCCCceEEEEe----CCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCccc-cCccCCCCcE
Q 022194          126 TC-----DLDEVASAIGPWTKLVWVE----SPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVL-SRPLELGADI  193 (301)
Q Consensus       126 ~~-----d~~~l~~~l~~~~~~v~i~----~~~np~G~~~~l~~l~~l~~~~--~~~li~D~~~~~~~~-~~~~~~~~di  193 (301)
                      +.     |.+.++..+++++++|.+.    ....|+-.+.++++++++.|+.  ++++++|+||+..+. ..|.+.|+|+
T Consensus       147 Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt~vGaDl  226 (416)
T COG4100         147 LTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPTHVGADL  226 (416)
T ss_pred             cccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCccccchhh
Confidence            75     8899999999999999986    2344666667899999999875  699999999998874 4688889999


Q ss_pred             EEecccccccCCCCceeeEEEEcchhH
Q 022194          194 VMHSATKFIAGHSDVMAGVLAVKGERL  220 (301)
Q Consensus       194 ~~~S~sK~~~g~~g~~~g~~~~~~~~~  220 (301)
                      +.+|+-|..+|.-.--+|+++++.+.+
T Consensus       227 iAGSLIKNpGGgiaktGGYiaGk~~~v  253 (416)
T COG4100         227 IAGSLIKNPGGGIAKTGGYIAGKAELV  253 (416)
T ss_pred             hccceeeCCCCceeeccceeechHHHH
Confidence            999999998765333468888875433

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.57  E-value=5.6e-15  Score=125.99  Aligned_cols=210  Identities=24%  Similarity=0.311  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhhcCCCceEEecchHHHHHHHHhccCCCCeEEEcCC---CCccHHHHHhhhcccCCcEEEEecCC---CHH
Q 022194           57 RDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDD---LYGGTDRLLSRVTPKTGVVVKRVNTC---DLD  130 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~~~~~g~~Vlv~~~---~y~~~~~~~~~~~~~~g~~~~~~~~~---d~~  130 (301)
                      ...+++.++++.|+++++++++..+|+.+++.-+.+|.+|+++..   .+++.++ +..+++..|.+++++-..   .++
T Consensus        49 ~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la~~~EvIvsRGelVeiGgsFR-ip~vm~~sGa~lvEVGttN~t~~~  127 (367)
T PF03841_consen   49 YAHVEELLCELTGAEAALVVNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFR-IPDVMRQSGARLVEVGTTNRTHLS  127 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            567788899999999999999999998766665567888998876   3343332 246778888888888765   588


Q ss_pred             HHHhhcCCCceEEEEeCCCCCc--ccc--ccHHHHHHHHHHcCCEEEEeCCcCC------------ccccCccCCCCcEE
Q 022194          131 EVASAIGPWTKLVWVESPTNPR--QQI--CDIRKIAEMAHAHGALLLVDNSIMS------------PVLSRPLELGADIV  194 (301)
Q Consensus       131 ~l~~~l~~~~~~v~i~~~~np~--G~~--~~l~~l~~l~~~~~~~li~D~~~~~------------~~~~~~~~~~~di~  194 (301)
                      ++++++.+++.+++-.+++|..  |..  .+++++++++|+|++++++|-..+.            +........|+|++
T Consensus       128 Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV  207 (367)
T PF03841_consen  128 DYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLV  207 (367)
T ss_dssp             ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEE
T ss_pred             cccccccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEE
Confidence            9999999999999888777753  323  4799999999999999999998631            11224456799999


Q ss_pred             EecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc----------------cHHHHHHHHH
Q 022194          195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----------------TMALRVEKQQ  258 (301)
Q Consensus       195 ~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------~~~~~~~~~~  258 (301)
                      ++|..|.++||   ++|+++++. .++++++...-....-......+++...++                .+.+..+.+.
T Consensus       208 ~fSGdKlLGGP---QaGiI~Gkk-~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~  283 (367)
T PF03841_consen  208 TFSGDKLLGGP---QAGIIVGKK-ELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELR  283 (367)
T ss_dssp             EEETTSSSSS----S-EEEEEEH-HHHHHHHHHHHTTT-B--HHHHHHHHHHHHH-------------------------
T ss_pred             EEECCCcCCCC---CeEEEEeCH-HHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhcccccccccccccccccccc
Confidence            99999999887   579999885 566666544333333333333333322222                2334445666


Q ss_pred             HHHHHHHHHHHhC
Q 022194          259 DNAQKIAEFLASH  271 (301)
Q Consensus       259 ~~~~~l~~~l~~~  271 (301)
                      ++++++...|+..
T Consensus       284 ~rA~~l~~~l~~~  296 (367)
T PF03841_consen  284 ARAERLAAQLKAA  296 (367)
T ss_dssp             -------------
T ss_pred             ccccccccccccc
Confidence            6677777766653

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK06105 aminotransferase; Provisional

Probab=99.56  E-value=2.5e-13  Score=123.47  Aligned_cols=266  Identities=14%  Similarity=0.104  Sum_probs=160.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCc--cccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPY--DYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~--~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~   84 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+   ...+  ..+.+.++...++.+.|.+.+.  .+.+.+.+||++|+.
T Consensus        48 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~-~q~~---~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve  123 (460)
T PRK06105         48 KRYIEGMAGLWSVALGFSEQRLVEAAA-RQMK---KLPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEAND  123 (460)
T ss_pred             CEEEEcchhHHhccCCCCCHHHHHHHH-HHHH---hCCCeecccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHH
Confidence            478888633  3458887666555432 2211   1111  1122234567889999998874  346788899999986


Q ss_pred             HHHhcc---------CCCCeEEEcCCCCccHHHHHhhhcc------cCC---cEEEEecCC------------------C
Q 022194           85 AVTHLL---------GTGEEIVAGDDLYGGTDRLLSRVTP------KTG---VVVKRVNTC------------------D  128 (301)
Q Consensus        85 ~~~~~~---------~~g~~Vlv~~~~y~~~~~~~~~~~~------~~g---~~~~~~~~~------------------d  128 (301)
                      +.+++.         ....+|+.....||+.......+..      .++   ..+..++..                  .
T Consensus       124 ~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  203 (460)
T PRK06105        124 TVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRL  203 (460)
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHH
Confidence            544442         1245788888999987532111110      011   011222211                  1


Q ss_pred             HHHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-Ccccc---CccCCCCcEEEe
Q 022194          129 LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELGADIVMH  196 (301)
Q Consensus       129 ~~~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~-~~~~~---~~~~~~~di~~~  196 (301)
                      .+++++.+.    +++.+|+++......|...+    +++|.++|++||+++|+||++. .|..+   .....+....+.
T Consensus       204 ~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~  283 (460)
T PRK06105        204 ANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDIL  283 (460)
T ss_pred             HHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCee
Confidence            355666662    46889999988877787765    9999999999999999999984 44332   222334444455


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHHh-------hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEF  267 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~  267 (301)
                      +++|.++|. .+..|.+++++ .+.+.+...       .+.++...+|..++++++.++.+.  +..++..+..+++.+.
T Consensus       284 ~~gK~lggG-~~P~~av~~~~-~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~  361 (460)
T PRK06105        284 VMSKQLSSS-YQPLSAVLMNE-KVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQAR  361 (460)
T ss_pred             eeecccccC-cccceEEEEcH-HHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            699999652 23467777764 454543321       123445677888888877777663  3456666666666666


Q ss_pred             HHh---CCCcceEecCCC
Q 022194          268 LAS---HPRVKKVNYAGL  282 (301)
Q Consensus       268 l~~---~~~v~~v~~p~~  282 (301)
                      |++   ++.|..++.-|+
T Consensus       362 L~~l~~~~~v~~vrG~Gl  379 (460)
T PRK06105        362 LRALADHPLVGEVRGVGL  379 (460)
T ss_pred             HHHhhcCCCeEEEEecce
Confidence            654   454555554444

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.56  E-value=1.3e-13  Score=120.93  Aligned_cols=203  Identities=17%  Similarity=0.085  Sum_probs=140.3

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecc-hHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-----
Q 022194           57 RDALESLLAKLDKAD---RALCFTS-GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~s-G~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-----  126 (301)
                      .+++++.++++++.+   +++++++ ||.|+. ++..++++|+++++......+..  |..+++..|. +..+..     
T Consensus        39 ~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r--~~~~a~~~g~-~~~~~~~~~~~  115 (349)
T TIGR01364        39 ANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKK--AAKEAKKYGV-VNVVASGKEGN  115 (349)
T ss_pred             HHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhCC-cEEEeccccCC
Confidence            778889999999863   3666645 789996 66778889999887765554443  4577888887 554442     


Q ss_pred             ----CCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccc
Q 022194          127 ----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFI  202 (301)
Q Consensus       127 ----~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~  202 (301)
                          .++++++  +++++++|.+++..|+||...+     ++++.+++++++|.+.+.+..+-..+ +.|++++|.+|++
T Consensus       116 ~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~-~~d~~~~ssqK~l  187 (349)
T TIGR01364       116 YTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVS-KFGLIYAGAQKNI  187 (349)
T ss_pred             CCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCCHH-HccEEEEeccccc
Confidence                2445444  3468999999999999999876     66777899999999999888763332 2469999999999


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHH--------h--h--hhcCCCCCHHhHHHHHccccc------HHHHHHHHHHHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYF--------L--Q--NAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKI  264 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~--------~--~--~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l  264 (301)
                       ||+|+  |+++.+++.+.+ +..        .  .  .....+.+....+++..+++.      ++.+.++..+.++++
T Consensus       188 -gP~Gl--g~l~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l  263 (349)
T TIGR01364       188 -GPAGL--TVVIVRKDLLGR-ASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLL  263 (349)
T ss_pred             -CCCce--EEEEECHHHHhh-cccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             58884  888888765432 211        0  0  111123344444444444433      455667777888888


Q ss_pred             HHHHHhCCCc
Q 022194          265 AEFLASHPRV  274 (301)
Q Consensus       265 ~~~l~~~~~v  274 (301)
                      ++.|++.+++
T Consensus       264 ~~~l~~~~gl  273 (349)
T TIGR01364       264 YDTIDNSNGF  273 (349)
T ss_pred             HHHHHhCCCe
Confidence            8888888653

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK07678 aminotransferase; Validated

Probab=99.56  E-value=2.6e-13  Score=123.10  Aligned_cols=260  Identities=17%  Similarity=0.153  Sum_probs=153.9

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~~ai~~~~   87 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+  . ..+....+.++...++.+.|.+.++.. .+.+++||++|+.+.+
T Consensus        47 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~q~~--~-~~~~~~~~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~Al  122 (451)
T PRK07678         47 NRYLDGMSGLWCVNVGYGRKELAEAAY-EQLK--T-LSYFPLTQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAF  122 (451)
T ss_pred             CEEEEccccHHhhcCCCCCHHHHHHHH-HHHH--h-cCccccccCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHH
Confidence            367787532  2347877666554432 2211  1 111111234566788889998887544 5677799999986443


Q ss_pred             hccC---------CCCeEEEcCCCCccHHHHHhhhcc-----------cCCcEEEEecCC--------------C---HH
Q 022194           88 HLLG---------TGEEIVAGDDLYGGTDRLLSRVTP-----------KTGVVVKRVNTC--------------D---LD  130 (301)
Q Consensus        88 ~~~~---------~g~~Vlv~~~~y~~~~~~~~~~~~-----------~~g~~~~~~~~~--------------d---~~  130 (301)
                      .+.+         ...+|+.....||+..........           ..++  ..++..              +   ++
T Consensus       123 klAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (451)
T PRK07678        123 KIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGF--LHVPPPDCYRMPGIESEDIYDLECVK  200 (451)
T ss_pred             HHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCC--EEeCCCccccccccCChHHHHHHHHH
Confidence            3321         236789889999997533211110           0111  112211              1   22


Q ss_pred             HHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-Ccccc---CccCCCCcEEEecc
Q 022194          131 EVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELGADIVMHSA  198 (301)
Q Consensus       131 ~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~-~~~~~---~~~~~~~di~~~S~  198 (301)
                      .+++.+.    +++.+|+++......|.+.+    +++|.++|++||+++|+||++. .|..+   .....|....+.++
T Consensus       201 ~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~  280 (451)
T PRK07678        201 EIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITM  280 (451)
T ss_pred             HHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEe
Confidence            3455553    57899999988776777754    8999999999999999999984 33322   22234544444468


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHH------hhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHH-
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYF------LQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA-  269 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~-  269 (301)
                      +|.++|. .+..|.++++++ +.+.+..      ..+..+.+.++..++++++.++.+.+  ..++..+..+++.+.|+ 
T Consensus       281 gK~lggG-~~Pi~av~~~~~-i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~  358 (451)
T PRK07678        281 AKGITSA-YLPLSATAVKKE-IYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKE  358 (451)
T ss_pred             ecccccC-CcceeEEEEcHH-HHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            9999653 245788877754 4443332      12344566788888888888777642  34555556566666664 


Q ss_pred             ---hCCCcceEe
Q 022194          270 ---SHPRVKKVN  278 (301)
Q Consensus       270 ---~~~~v~~v~  278 (301)
                         +++.+..++
T Consensus       359 ~~~~~~~v~~vr  370 (451)
T PRK07678        359 ELGEHPLVGDIR  370 (451)
T ss_pred             HHhcCCCEEEEE
Confidence               345444443

>PRK05965 hypothetical protein; Provisional

Probab=99.56  E-value=2.1e-13  Score=123.85  Aligned_cols=266  Identities=15%  Similarity=0.126  Sum_probs=157.7

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCcccc--CCCCchHHHHHHHHHhhcC--CCceEEecchHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT--RSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~--~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~   84 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+   ...+...  .+..+...++.+.|.+.+.  .+.+++.+||++|+.
T Consensus        46 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~-~q~~---~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve  121 (459)
T PRK05965         46 HQLLDAFAGLWCVNVGYGQESIVEAAA-EQMR---ELPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVD  121 (459)
T ss_pred             CEEEECcccHHhccCCCCCHHHHHHHH-HHHH---hcCCcccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHH
Confidence            478888533  3347777655444432 2211   1111111  1234557788999988863  456777889999986


Q ss_pred             HHHhccC--------C-CCeEEEcCCCCccHHHHHhhhc------ccCC-----cEEEEecC-------CC--------H
Q 022194           85 AVTHLLG--------T-GEEIVAGDDLYGGTDRLLSRVT------PKTG-----VVVKRVNT-------CD--------L  129 (301)
Q Consensus        85 ~~~~~~~--------~-g~~Vlv~~~~y~~~~~~~~~~~------~~~g-----~~~~~~~~-------~d--------~  129 (301)
                      +.+.+.+        + ..+|+....+||+.......+.      ..++     ......+.       +|        +
T Consensus       122 ~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (459)
T PRK05965        122 SAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASV  201 (459)
T ss_pred             HHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHH
Confidence            4433311        2 4579999999999753211110      0111     11111111       12        2


Q ss_pred             HHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc----cccCccCCCCcEEEec
Q 022194          130 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP----VLSRPLELGADIVMHS  197 (301)
Q Consensus       130 ~~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~----~~~~~~~~~~di~~~S  197 (301)
                      +.+++.+.    +++.+|+++......|.+.+    +++|.++|++||+++|.||++...    .+......|....+.+
T Consensus       202 ~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~  281 (459)
T PRK05965        202 AALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMT  281 (459)
T ss_pred             HHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEE
Confidence            45666664    56889999988877777653    899999999999999999997632    2222333455455555


Q ss_pred             ccccccCCCCceeeEEEEcchhHHHHHHH-------hhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHH
Q 022194          198 ATKFIAGHSDVMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFL  268 (301)
Q Consensus       198 ~sK~~~g~~g~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l  268 (301)
                      ++|.++|. -+..|.++++++ +.+.+..       ..+..+.+-++..++++++.++.+++  ..++..+...++.+.|
T Consensus       282 ~gKgl~gG-~~Pi~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l  359 (459)
T PRK05965        282 VAKGLTSG-YVPMGAVLMSDH-VYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGL  359 (459)
T ss_pred             echhhccC-CcceeEEEEcHH-HHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            89999653 135677777754 4443321       12334456688888888888777632  3455555666666666


Q ss_pred             Hh---CCCcceEecCCC
Q 022194          269 AS---HPRVKKVNYAGL  282 (301)
Q Consensus       269 ~~---~~~v~~v~~p~~  282 (301)
                      ++   ++.|..++..|+
T Consensus       360 ~~l~~~~~v~~vrG~Gl  376 (459)
T PRK05965        360 DALRAHPLVGDVRGRGL  376 (459)
T ss_pred             HhhccCCCEEEEeecce
Confidence            54   455555555544

>PRK06062 hypothetical protein; Provisional

Probab=99.56  E-value=2.6e-13  Score=122.97  Aligned_cols=266  Identities=16%  Similarity=0.153  Sum_probs=159.0

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+  . ..+....+.++...++.+.|.++..  .+.+.+++||++|+.+.
T Consensus        53 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~q~~--~-~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~A  128 (451)
T PRK06062         53 RRYLDFSSQLVNTNIGHQHPKVVAAIQ-EQAA--R-LCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHA  128 (451)
T ss_pred             CEEEEcccCHHhhcCCCCCHHHHHHHH-HHHH--h-cCCcCCccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHH
Confidence            478888533  3447877766655432 2211  1 1111123345668889999988874  45788889999998644


Q ss_pred             Hhc---cCCCCeEEEcCCCCccHHHHHhhhcc----------cCCcEEEEecC---------CC-------HHHHHhhcC
Q 022194           87 THL---LGTGEEIVAGDDLYGGTDRLLSRVTP----------KTGVVVKRVNT---------CD-------LDEVASAIG  137 (301)
Q Consensus        87 ~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~----------~~g~~~~~~~~---------~d-------~~~l~~~l~  137 (301)
                      +.+   ...+.+|+.....||+.....-....          ..++.....+.         .|       ++.+++.++
T Consensus       129 lklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~  208 (451)
T PRK06062        129 VRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIE  208 (451)
T ss_pred             HHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHH
Confidence            443   33456799889999998533211111          01111111110         12       566677664


Q ss_pred             ----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCCCCcEEEecccccccCC
Q 022194          138 ----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELGADIVMHSATKFIAGH  205 (301)
Q Consensus       138 ----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~~~di~~~S~sK~~~g~  205 (301)
                          +++.+|+++......|.+.|    +++|.++|++||+++|+||+++.. -..   .....|....+.+++|.+++.
T Consensus       209 ~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~gK~lggG  288 (451)
T PRK06062        209 LEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSG  288 (451)
T ss_pred             hcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeeechhhhcC
Confidence                46789999988877788876    999999999999999999998732 221   122334444556699999752


Q ss_pred             CCceeeEEEEcchhHHHHHHHh--hhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHH-HHHHHHHHh----CCCcce
Q 022194          206 SDVMAGVLAVKGERLAKELYFL--QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNA-QKIAEFLAS----HPRVKK  276 (301)
Q Consensus       206 ~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~-~~l~~~l~~----~~~v~~  276 (301)
                       -+..|.+++++ .+.+.+...  .+.++.+.++..++++++.++.+.+  ..++..+.. +++.+.|++    ++.+..
T Consensus       289 -~~Pigav~~~~-~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~  366 (451)
T PRK06062        289 -YVPLGGVAISE-AIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGE  366 (451)
T ss_pred             -CcCcEEEEEcH-HHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEe
Confidence             12356666665 455544321  1223445578888888888776632  334443343 345455543    555555


Q ss_pred             EecCCC
Q 022194          277 VNYAGL  282 (301)
Q Consensus       277 v~~p~~  282 (301)
                      ++..|+
T Consensus       367 vrG~Gl  372 (451)
T PRK06062        367 VRGLGV  372 (451)
T ss_pred             Eecccc
Confidence            665555

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.56  E-value=1.8e-13  Score=122.95  Aligned_cols=267  Identities=13%  Similarity=0.082  Sum_probs=155.3

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+  ......+..+.++...++.+.|.+...  .+.+.+++||++|+.+.
T Consensus        40 ~~ylD~~~g~~~~~lGh~~p~i~~ai~-~q~~--~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~A  116 (422)
T PRK05630         40 STVIDAMSSWWSAAHGHGHPRLKAAAH-KQID--TMSHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVA  116 (422)
T ss_pred             CEEEEcchhHHHhcCCCCCHHHHHHHH-HHHH--hCCCcccCCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHH
Confidence            478888533  4457877766665543 2211  111111111234567888999988863  45788899999998644


Q ss_pred             HhccC---------CCCeEEEcCCCCccHHHHHhhhccc-------CC---cEEEEecCC-----C-------HHHHHhh
Q 022194           87 THLLG---------TGEEIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVNTC-----D-------LDEVASA  135 (301)
Q Consensus        87 ~~~~~---------~g~~Vlv~~~~y~~~~~~~~~~~~~-------~g---~~~~~~~~~-----d-------~~~l~~~  135 (301)
                      +.+.+         .+.+|+.....||+.......+...       ++   -.+..++..     +       .+.+++.
T Consensus       117 lklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  196 (422)
T PRK05630        117 IKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELL  196 (422)
T ss_pred             HHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHH
Confidence            33311         2357999999999864322111110       00   011112111     1       2345555


Q ss_pred             cCCCceEEEEeCC-CCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-ccccC---ccCCCCcEEEecccccccCCC
Q 022194          136 IGPWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR---PLELGADIVMHSATKFIAGHS  206 (301)
Q Consensus       136 l~~~~~~v~i~~~-~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~~---~~~~~~di~~~S~sK~~~g~~  206 (301)
                      +.+++.+|+++.. ....|...+    +++|.++|++||+++|+||++.. |..+.   ....+.+..+.+++|.++|. 
T Consensus       197 ~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~gK~l~gG-  275 (422)
T PRK05630        197 IDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGG-  275 (422)
T ss_pred             HhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeeeechhhcC-
Confidence            6678999999974 666676543    89999999999999999999842 22111   12234443444799999552 


Q ss_pred             CceeeEEEEcchhHHHHHHHh------hhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHHh---CCCcc
Q 022194          207 DVMAGVLAVKGERLAKELYFL------QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS---HPRVK  275 (301)
Q Consensus       207 g~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~---~~~v~  275 (301)
                      -..+|++++++ .+.+.+...      .+..+...++..++++...++.+.+  ..++..++.+++++.|+.   ++.|.
T Consensus       276 ~~p~~av~~~~-~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~  354 (422)
T PRK05630        276 FMSFAATLCTD-KVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGLSPLAHLPGVA  354 (422)
T ss_pred             ccccceeeccH-HHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhcCCCee
Confidence            12357777764 444543211      2234456778888888777776642  445666666667766653   44454


Q ss_pred             eEecCCC
Q 022194          276 KVNYAGL  282 (301)
Q Consensus       276 ~v~~p~~  282 (301)
                      .++.-|+
T Consensus       355 ~vRg~Gl  361 (422)
T PRK05630        355 DVRVLGA  361 (422)
T ss_pred             eeecccc
Confidence            4544443

>PRK07482 hypothetical protein; Provisional

Probab=99.56  E-value=2.4e-13  Score=123.55  Aligned_cols=265  Identities=14%  Similarity=0.059  Sum_probs=155.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCcc--ccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYD--YTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~--y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~   84 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+   ...+.  +..+.++...++.+.|.+...  .+.+.+++||++|+.
T Consensus        50 ~~ylD~~sg~~~~~lGh~~p~v~~Av~-~q~~---~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve  125 (461)
T PRK07482         50 RRYIDAFAGLYCVNVGYGRTEVAEAIA-EQAK---ELAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANE  125 (461)
T ss_pred             CEEEEcccchhhhcCCCCCHHHHHHHH-HHHH---hcCccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHH
Confidence            478888643  3357877666555432 2211   11111  112245668889999988873  457888899999986


Q ss_pred             HHHhccC---------CCCeEEEcCCCCccHHHHHhhhc---------c--cCCcEEEEecC----------------CC
Q 022194           85 AVTHLLG---------TGEEIVAGDDLYGGTDRLLSRVT---------P--KTGVVVKRVNT----------------CD  128 (301)
Q Consensus        85 ~~~~~~~---------~g~~Vlv~~~~y~~~~~~~~~~~---------~--~~g~~~~~~~~----------------~d  128 (301)
                      +.+.+.+         .+.+|+.....||+.......+.         .  ..+......+.                .+
T Consensus       126 ~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  205 (461)
T PRK07482        126 TQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYC  205 (461)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHH
Confidence            4444331         24678988999999642211110         0  01111111111                02


Q ss_pred             HHHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-cc---cCccCCCCcEEEe
Q 022194          129 LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VL---SRPLELGADIVMH  196 (301)
Q Consensus       129 ~~~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~---~~~~~~~~di~~~  196 (301)
                      ++.+++.+.    +++.+|+++......|.+.+    +++|.++|++||+++|+||++... -.   ......|....+.
T Consensus       206 ~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv  285 (461)
T PRK07482        206 ADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLI  285 (461)
T ss_pred             HHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEE
Confidence            466676663    46889999988777777753    899999999999999999997632 22   2222334444444


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHH-------hhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEF  267 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~  267 (301)
                      +++|.++|. -+..|.++++++ +.+.+..       ..+..+.+-++..+++++..++.+.+  ..++..+..+++.+.
T Consensus       286 ~~gKgl~gG-~~Pi~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~  363 (461)
T PRK07482        286 TVAKGLTSA-YAPLSGSIVGEK-VWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRAR  363 (461)
T ss_pred             EEccccccC-ccccceeeecHH-HHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            489999653 123566666644 4443321       11333455678888888888776532  335555555566666


Q ss_pred             HH----hCCCcceEecCC
Q 022194          268 LA----SHPRVKKVNYAG  281 (301)
Q Consensus       268 l~----~~~~v~~v~~p~  281 (301)
                      |+    +++.+..++..|
T Consensus       364 L~~l~~~~~~v~~vrG~G  381 (461)
T PRK07482        364 LRAAFGDHPLVGEVRGVG  381 (461)
T ss_pred             HHHHHhcCCCEEEEeece
Confidence            54    456555555443

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.56  E-value=1.4e-13  Score=123.81  Aligned_cols=266  Identities=13%  Similarity=0.061  Sum_probs=154.8

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      .+++||.++  +..+|..++.+..+.. .+.+  .........+.++...++.+.|.++..  .+.+.+++||++|+.+.
T Consensus        43 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~-~q~~--~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~A  119 (428)
T PRK07986         43 RRLVDGMSSWWAAIHGYNHPQLNAAMK-SQID--AMSHVMFGGITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA  119 (428)
T ss_pred             CEEEEcchhHHhhcCCCCCHHHHHHHH-HHHh--hcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHH
Confidence            367787532  3457877655554432 2211  111111112245668888899988874  35788889999998644


Q ss_pred             Hhcc--------CCCCeEEEcCCCCccHHHHHhhhccc-------CC---cEEEEec-----------CCCHHHHHhhcC
Q 022194           87 THLL--------GTGEEIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVN-----------TCDLDEVASAIG  137 (301)
Q Consensus        87 ~~~~--------~~g~~Vlv~~~~y~~~~~~~~~~~~~-------~g---~~~~~~~-----------~~d~~~l~~~l~  137 (301)
                      +.+.        ....+|+....+||+.....-.+...       +.   -.+..++           ..|.+++++.++
T Consensus       120 lklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~  199 (428)
T PRK07986        120 MKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMA  199 (428)
T ss_pred             HHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHH
Confidence            3332        23468999999999864221111000       00   0111121           124567777774


Q ss_pred             ---CCceEEEEeCC-CCCccccc----cHHHHHHHHHHcCCEEEEeCCcCC-ccccC---ccCCCCcEEEecccccccCC
Q 022194          138 ---PWTKLVWVESP-TNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS-PVLSR---PLELGADIVMHSATKFIAGH  205 (301)
Q Consensus       138 ---~~~~~v~i~~~-~np~G~~~----~l~~l~~l~~~~~~~li~D~~~~~-~~~~~---~~~~~~di~~~S~sK~~~g~  205 (301)
                         +++.+|+++.. ....|...    .+++|.++|++||+++|+||++.. |..+.   ....|.+..+.+++|.++| 
T Consensus       200 ~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t~gK~l~g-  278 (428)
T PRK07986        200 AHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILCLGKALTG-  278 (428)
T ss_pred             hCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCCEEEechhhhC-
Confidence               46778888874 55455543    289999999999999999999842 22221   1223433333359999954 


Q ss_pred             CC-ceeeEEEEcchhHHHHHHHh-----hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh---CCCc
Q 022194          206 SD-VMAGVLAVKGERLAKELYFL-----QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS---HPRV  274 (301)
Q Consensus       206 ~g-~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~---~~~v  274 (301)
                       | +..+.+++++ .+.+.+...     .+..+.+.++..+++++..++.+.  +..++..++.+++++.|++   ++.|
T Consensus       279 -G~~p~~av~~~~-~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~i  356 (428)
T PRK07986        279 -GTMTLSATLTTR-EVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLREELAPLRDAPMV  356 (428)
T ss_pred             -CcccCcchhchH-HHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence             4 3456666664 455544321     133345567888888888877664  3456677777777777765   4545


Q ss_pred             ceEecCCC
Q 022194          275 KKVNYAGL  282 (301)
Q Consensus       275 ~~v~~p~~  282 (301)
                      ..++..|+
T Consensus       357 ~~vRg~Gl  364 (428)
T PRK07986        357 ADVRVLGA  364 (428)
T ss_pred             EeEeccce
Confidence            44554443

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.56  E-value=1.5e-13  Score=123.58  Aligned_cols=249  Identities=12%  Similarity=0.052  Sum_probs=152.3

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC--CceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~~~   86 (301)
                      ..++||.++  +.-+|..++.+..+.. .+.+  ...  .+ ...++...++.+.|.+.+..  +.+.+++||++|+...
T Consensus        53 ~~yiD~~~g~~~~~lGh~~p~v~~ai~-~q~~--~~~--~~-~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~A  126 (433)
T PRK00615         53 KTFIDFCGSWGSLIHGHSHPKICDAIQ-QGAE--RGT--SY-GLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTA  126 (433)
T ss_pred             CEEEEcccchhccccCCCCHHHHHHHH-HHHH--hCC--CC-CCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHH
Confidence            468888643  3347887766665532 1211  111  11 12345578888888888754  4788889999998644


Q ss_pred             Hhcc---CCCCeEEEcCCCCccHHHH-Hhhh--c--------ccC-----CcEEEEecCCCHHHHHhhcC---CCceEEE
Q 022194           87 THLL---GTGEEIVAGDDLYGGTDRL-LSRV--T--------PKT-----GVVVKRVNTCDLDEVASAIG---PWTKLVW  144 (301)
Q Consensus        87 ~~~~---~~g~~Vlv~~~~y~~~~~~-~~~~--~--------~~~-----g~~~~~~~~~d~~~l~~~l~---~~~~~v~  144 (301)
                      +++.   ..+.+|+.....||+.... +...  .        ...     ......++..|.+++++.+.   +++.+|+
T Consensus       127 iklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI  206 (433)
T PRK00615        127 VRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVI  206 (433)
T ss_pred             HHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEE
Confidence            4433   3346788888899996421 1000  0        000     01122234457888888774   4678889


Q ss_pred             EeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc---cccCccCCC--CcEEEecccccccCCCCceeeEEEE
Q 022194          145 VESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP---VLSRPLELG--ADIVMHSATKFIAGHSDVMAGVLAV  215 (301)
Q Consensus       145 i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~---~~~~~~~~~--~di~~~S~sK~~~g~~g~~~g~~~~  215 (301)
                      ++......|.+.|    +++|.++|++||+++|+||++...   ........+  .|++  +++|.++|  |+.+|++++
T Consensus       207 ~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~gv~PDi~--~~gK~lgg--G~p~~av~~  282 (433)
T PRK00615        207 FEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYHVKPDIT--VYGKILGG--GLPAAAVVA  282 (433)
T ss_pred             ECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcCCCCCeE--EEcccccC--Ccceeeeee
Confidence            9988887788766    679999999999999999998421   111111223  4554  59999964  345788887


Q ss_pred             cchhHHHHHHHhh---hhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          216 KGERLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       216 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      ++ .+.+.+....   ...+...++..++++++.++.+.  ..+++..++.+++.+.|++
T Consensus       283 ~~-~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~  341 (433)
T PRK00615        283 HK-SIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEE  341 (433)
T ss_pred             cH-HHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            65 4545432111   12234457788888877777653  3456666666677555554

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.55  E-value=2.1e-13  Score=123.61  Aligned_cols=267  Identities=15%  Similarity=0.147  Sum_probs=156.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC--CceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~~~   86 (301)
                      ..+|||.++  +.-+|..++.+..+.. .+.+  .........+..+...++.+.|.+..+.  +.+.+++||++|+.+.
T Consensus        54 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~ql~--~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~A  130 (453)
T PRK06943         54 RRYLDAISSWWVNLFGHANPRINAALK-DQLD--TLEHAMLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIA  130 (453)
T ss_pred             CEEEEcchHHHHhcCCCCCHHHHHHHH-HHHH--hcCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHH
Confidence            367787544  4457877766665432 2211  1111111122445677888888888753  4678889999998644


Q ss_pred             Hhcc---------CCCCeEEEcCCCCccHHHHHhhhccc-----------CCcEEEEecC---------------CCHHH
Q 022194           87 THLL---------GTGEEIVAGDDLYGGTDRLLSRVTPK-----------TGVVVKRVNT---------------CDLDE  131 (301)
Q Consensus        87 ~~~~---------~~g~~Vlv~~~~y~~~~~~~~~~~~~-----------~g~~~~~~~~---------------~d~~~  131 (301)
                      +.+.         ..+.+|+.....||+.......+...           .+......+.               .+++.
T Consensus       131 lKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  210 (453)
T PRK06943        131 LKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALAD  210 (453)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHH
Confidence            4432         12467999999999975221111100           0111111110               12466


Q ss_pred             HHhhcC---CCceEEEEeC-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-cccc---CccCCCCcEEEeccc
Q 022194          132 VASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELGADIVMHSAT  199 (301)
Q Consensus       132 l~~~l~---~~~~~v~i~~-~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~---~~~~~~~di~~~S~s  199 (301)
                      +++.+.   +++.+|+++. .....|.+.+    +++|.++|++||+++|+||++.. |-.+   .....|....+.+++
T Consensus       211 l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~g  290 (453)
T PRK06943        211 VRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLS  290 (453)
T ss_pred             HHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeee
Confidence            666664   5788999998 4676777653    89999999999999999999753 2222   222345444445589


Q ss_pred             ccccCCCCceeeEEEEcchhHHHHHHH------hhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHHh-
Q 022194          200 KFIAGHSDVMAGVLAVKGERLAKELYF------LQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS-  270 (301)
Q Consensus       200 K~~~g~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~-  270 (301)
                      |.++|. -+..|.++++++ +.+.+..      ..+..+.+-++..++++++.++.+.+  ..++..+..+++.+.|++ 
T Consensus       291 Kgl~gG-~~Pi~av~~~~e-i~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l  368 (453)
T PRK06943        291 KGISGG-YLPLSLVLSRDA-IFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPL  368 (453)
T ss_pred             hhhccC-cccceEEEEcHH-HHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            999652 134677777754 4443321      11233444577788887777776632  345555566666666654 


Q ss_pred             --CCCcceEecCCC
Q 022194          271 --HPRVKKVNYAGL  282 (301)
Q Consensus       271 --~~~v~~v~~p~~  282 (301)
                        ++.|..++.-|+
T Consensus       369 ~~~~~v~~vrG~Gl  382 (453)
T PRK06943        369 AAHPQVRHLRQRGT  382 (453)
T ss_pred             hcCCCEEeEecccc
Confidence              455555554443

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.55  E-value=9e-14  Score=122.71  Aligned_cols=203  Identities=19%  Similarity=0.166  Sum_probs=131.7

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecc-hHHHHH-HHHhccC---CCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDKAD---RALCFTS-GMAALA-AVTHLLG---TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~s-G~~ai~-~~~~~~~---~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      .++.++.++++++.+   +++++++ ||+++. ++..++.   +++.|++     ..+...+..+++..|++++.++.+ 
T Consensus        46 ~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~-----g~~~~~~~~~a~~~g~~~~~~~~~~  120 (355)
T cd00611          46 VNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT-----GAWSAKAAKEAKRYGGVVVIVAAKE  120 (355)
T ss_pred             HHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC-----CHHHHHHHHHHHhcCCCcEEEeccc
Confidence            778899999999963   3555555 789986 5566666   4455544     222222235667778888877743 


Q ss_pred             -----C-HHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEeccccc
Q 022194          128 -----D-LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF  201 (301)
Q Consensus       128 -----d-~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~  201 (301)
                           + .+..+..+++++++|.+++..|.||...+     ++++.+|+++++|.+++.|..+-..+ ..++++.|.+|+
T Consensus       121 ~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~-~~~~~~ss~~K~  194 (355)
T cd00611         121 EGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVS-KFGVIYAGAQKN  194 (355)
T ss_pred             ccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCCCCCHH-HhCEEEeecccc
Confidence                 3 33344456678999999999999999832     34556999999999999988763332 134677779999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHh-----------hhhc-CCCCCHHhHHHHHccccc------HHHHHHHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFL-----------QNAE-GSGLAPFDCWICLRGVKT------MALRVEKQQDNAQK  263 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~  263 (301)
                      + ||+|+  |+++.+++.+.+ +...           .... ..+.+....+.+.++++.      ++.+.++..+.+++
T Consensus       195 l-GP~G~--g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~  270 (355)
T cd00611         195 L-GPAGV--TVVIVRKDLLGK-ARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQL  270 (355)
T ss_pred             c-CCCce--EEEEECHHHHhh-cccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8 68884  888888654422 1110           0111 123333344444444443      34455677778888


Q ss_pred             HHHHHHhCCCc
Q 022194          264 IAEFLASHPRV  274 (301)
Q Consensus       264 l~~~l~~~~~v  274 (301)
                      +.+.|++++++
T Consensus       271 l~~~l~~~~gl  281 (355)
T cd00611         271 LYDTIDNSNGF  281 (355)
T ss_pred             HHHHHHhCccc
Confidence            88888888764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.55  E-value=4.4e-13  Score=121.28  Aligned_cols=251  Identities=17%  Similarity=0.133  Sum_probs=151.8

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~~   85 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+  .........+.++...++.+.|.+...   .+.+.+++||++|+.+
T Consensus        54 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~ql~--~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~  130 (441)
T PRK05769         54 NVYLDFNAGIAVTNVGHAHPKVVKAVK-EQAE--KFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEA  130 (441)
T ss_pred             CEEEECCCchhhcccCCCCHHHHHHHH-HHHH--hccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHH
Confidence            478888644  3358877766555432 2211  111111112245667889999988874   3578888999999864


Q ss_pred             HHhc---cCCCCeEEEcCCCCccHHHHHhhhccc----------CCcEEEEecCC----------C--------HHHHHh
Q 022194           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK----------TGVVVKRVNTC----------D--------LDEVAS  134 (301)
Q Consensus        86 ~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~----------~g~~~~~~~~~----------d--------~~~l~~  134 (301)
                      .+++   ...+++|+.....||+.....-.+...          ..-.+..++..          +        ++.+++
T Consensus       131 AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  210 (441)
T PRK05769        131 AIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIED  210 (441)
T ss_pred             HHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHH
Confidence            4433   234567888899999986432121100          00112222211          1        233554


Q ss_pred             -hc-----CCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-cccc---CccCCC--CcEEEecc
Q 022194          135 -AI-----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELG--ADIVMHSA  198 (301)
Q Consensus       135 -~l-----~~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~---~~~~~~--~di~~~S~  198 (301)
                       .+     .+++.+|+++......|.+.+    +++|.++|++||+++|+||++.. +...   .....+  .|++  ++
T Consensus       211 ~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDiv--t~  288 (441)
T PRK05769        211 YLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDII--TL  288 (441)
T ss_pred             HHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEE--EE
Confidence             22     256889999988888888877    99999999999999999999873 2211   111223  4655  58


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH-HHHHHHHHHHHHHHHHHHh
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA-LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~l~~~l~~  270 (301)
                      +|.+++  |++.|+++++++ +.... ......+.+.++..+++++..++.+. +..++..++.++|++.|++
T Consensus       289 ~K~l~~--G~p~gav~~~~~-i~~~~-~~~~~~T~~g~p~~~aaa~a~L~~l~~~~~~~~~~~g~~l~~~L~~  357 (441)
T PRK05769        289 AKAIAG--GLPLGAVIGRAE-LMFLP-PGSHANTFGGNPVAAAAALATLEELEEGLLENAQKLGEYLRKELKE  357 (441)
T ss_pred             cccccC--CcccEEEEEehh-hhhcC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999964  466788887754 33321 11222334457777777777777654 3446666667777777754

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.54  E-value=9.4e-14  Score=134.60  Aligned_cols=187  Identities=22%  Similarity=0.281  Sum_probs=140.8

Q ss_pred             CCCCCCccccCeeecceeecCCCCCCCCccccCCCC-------chHHHHHHHHHhhcCCC--ceEEecchHHHHHH-HHh
Q 022194           19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-------PTRDALESLLAKLDKAD--RALCFTSGMAALAA-VTH   88 (301)
Q Consensus        19 ~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~-------~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~~-~~~   88 (301)
                      +..|++...|+++.+.....+.    +...|.+|..       ....+++..++++.|++  ++-++.++|++..+ +++
T Consensus        82 g~G~y~~~~P~vi~~~i~~~~~----~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a  157 (954)
T PRK05367         82 GQGYYGTHTPPVILRNILENPA----WYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALA  157 (954)
T ss_pred             CCCCCCCcCcHHHHHHHHhCcc----hhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHh
Confidence            4567777777777666655555    2334566521       22566778899999988  56777788766643 333


Q ss_pred             c-cCC--CCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 022194           89 L-LGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (301)
Q Consensus        89 ~-~~~--g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~  165 (301)
                      + +++  +++|++++..|+.+...|+..++..|++++.++.++  ++.   .+++.++++..|++ +|.+.|+++|+++|
T Consensus       158 ~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~--d~~---~~~~~~vlvq~p~~-~G~i~d~~~i~~~a  231 (954)
T PRK05367        158 KRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK--ALD---HDDVFGVLLQYPGT-SGEVRDYTALIAAA  231 (954)
T ss_pred             hhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc--CCC---cccEEEEEEecCCC-CeeeccHHHHHHHH
Confidence            2 344  489999999999999888888899999999999653  111   24566677777655 99999999999999


Q ss_pred             HHcCCEEEEeCCc-CCccccCccCCCCcEEEeccccc-----ccCCCCceeeEEEEcch
Q 022194          166 HAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       166 ~~~~~~li~D~~~-~~~~~~~~~~~~~di~~~S~sK~-----~~g~~g~~~g~~~~~~~  218 (301)
                      |++|+++++|..+ +.+....+.+.|+|++++|.+||     +||| +  .|+++++++
T Consensus       232 h~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP-~--aGflavr~~  287 (954)
T PRK05367        232 HARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGP-H--AAYFAVRDA  287 (954)
T ss_pred             HHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCC-C--EEEEEECHH
Confidence            9999999999977 45556678899999999999999     7665 3  799999864

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.54  E-value=2.3e-13  Score=123.60  Aligned_cols=265  Identities=14%  Similarity=0.075  Sum_probs=155.3

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-----ceEEe-cchHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-----RALCF-TSGMAA   82 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-----~~i~~-~sG~~a   82 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+  +...+....+.++...++.+.|.+....+     ..+++ +||++|
T Consensus        63 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~ql~--~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEA  139 (464)
T PRK06938         63 RQFIDCLAGAGTLALGHNHPVVIEAIQ-QVLA--DELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDA  139 (464)
T ss_pred             CEEEEccCCccccccCCCCHHHHHHHH-HHHH--hhhcccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHH
Confidence            478888533  3447877666555432 2211  11111111224566778888888765321     34455 699999


Q ss_pred             HHHHHhcc---CCCCeEEEcCCCCccHHHHHhhhccc------CC---cEEEEecCC-----------------CHHHHH
Q 022194           83 LAAVTHLL---GTGEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTC-----------------DLDEVA  133 (301)
Q Consensus        83 i~~~~~~~---~~g~~Vlv~~~~y~~~~~~~~~~~~~------~g---~~~~~~~~~-----------------d~~~l~  133 (301)
                      +.+.+++.   ..+.+|+.....||+...........      .+   -.+..++..                 +++.++
T Consensus       140 ve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~  219 (464)
T PRK06938        140 VEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLE  219 (464)
T ss_pred             HHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHH
Confidence            86544442   34568898899999975432211110      00   012222211                 245667


Q ss_pred             hhcCC------CceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc----cccCccCCCCcEEEeccc
Q 022194          134 SAIGP------WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP----VLSRPLELGADIVMHSAT  199 (301)
Q Consensus       134 ~~l~~------~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~----~~~~~~~~~~di~~~S~s  199 (301)
                      +.+.+      ++.+|+++......|.+.+    +++|.++|++||+++|.||++...    .+......|....+.+++
T Consensus       220 ~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~g  299 (464)
T PRK06938        220 NLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLS  299 (464)
T ss_pred             HHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEee
Confidence            76652      5789999987776677653    899999999999999999997532    222222345544455589


Q ss_pred             ccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHHh----CCC
Q 022194          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPR  273 (301)
Q Consensus       200 K~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~----~~~  273 (301)
                      |.++|  |+..|.++++++ + +.+....+..+.+-++..++++++.++.+.+  ..++..+..+++.+.|++    ++.
T Consensus       300 Kglgg--G~PlsAv~~~~~-~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~  375 (464)
T PRK06938        300 KAIGG--SLPLAVVVYREW-L-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQ  375 (464)
T ss_pred             ccccC--CCceEEEeehhH-h-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99965  466788887754 3 3222222334455677888888888776532  334555555566666543    555


Q ss_pred             cceEecCCC
Q 022194          274 VKKVNYAGL  282 (301)
Q Consensus       274 v~~v~~p~~  282 (301)
                      +..|+..|+
T Consensus       376 i~~VrG~Gl  384 (464)
T PRK06938        376 LGDVRGRGL  384 (464)
T ss_pred             eeeeeccce
Confidence            555555544

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.54  E-value=3e-13  Score=121.45  Aligned_cols=154  Identities=25%  Similarity=0.326  Sum_probs=123.8

Q ss_pred             HHHHHHHHHhhcCCCceEEecchH-HHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------
Q 022194           57 RDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~~sG~-~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------  127 (301)
                      ..+.++..++.||++...++.+|| .++ .++++++++||.|++++++|.+....    +-..|+..+++.+.       
T Consensus        72 i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~g----lilaGa~Pvyl~p~~np~~gi  147 (557)
T COG1982          72 IKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHG----LILAGATPVYLEPSRNPLYGI  147 (557)
T ss_pred             HHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHH----HHHcCCceEEecCCCCccccc
Confidence            789999999999999999999997 666 58899999999999999999888632    44566666666643       


Q ss_pred             ----CHHHHHhhcC--CCc-eEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCc-----cccC-ccCCCCcEE
Q 022194          128 ----DLDEVASAIG--PWT-KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-----VLSR-PLELGADIV  194 (301)
Q Consensus       128 ----d~~~l~~~l~--~~~-~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~-----~~~~-~~~~~~di~  194 (301)
                          +.+.+++.+.  +.. +++++++|++ .|.+.++++|.+.++++++|+.+|++|+..     ..+. ....++|++
T Consensus       148 ~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~  226 (557)
T COG1982         148 IGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFV  226 (557)
T ss_pred             cCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEE
Confidence                6777877665  234 7889999988 899999999999999999999999998742     2222 223688999


Q ss_pred             EecccccccCCCCceeeEEEEcc
Q 022194          195 MHSATKFIAGHSDVMAGVLAVKG  217 (301)
Q Consensus       195 ~~S~sK~~~g~~g~~~g~~~~~~  217 (301)
                      +-|.||.+++..  +++.+..++
T Consensus       227 tqS~HK~l~alS--QaS~iHv~~  247 (557)
T COG1982         227 TQSTHKLLAALS--QASMIHVKD  247 (557)
T ss_pred             Eechhhhhhhhh--hhHHHhhCC
Confidence            999999987653  678887775

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.54  E-value=2.7e-13  Score=122.02  Aligned_cols=252  Identities=13%  Similarity=0.093  Sum_probs=149.8

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      .++|||.++  +..+|..++.+..+.. .+.+  +........+.++...++.+.|.+...  .+.+.+++||++|+.+.
T Consensus        44 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~q~~--~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~A  120 (429)
T PRK06173         44 RRLIDGMSSWWAALHGYNHPRLNAAAT-NQLA--KMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVA  120 (429)
T ss_pred             CEEEEccchHHhccCCCCCHHHHHHHH-HHHH--hcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHH
Confidence            467887532  4567877766555432 2211  111111111234567888888888763  45788889999998644


Q ss_pred             HhccC--------C-CCeEEEcCCCCccHHHHHhhhcc-------cCC---cEEEEecCC-----------CHHHHHhhc
Q 022194           87 THLLG--------T-GEEIVAGDDLYGGTDRLLSRVTP-------KTG---VVVKRVNTC-----------DLDEVASAI  136 (301)
Q Consensus        87 ~~~~~--------~-g~~Vlv~~~~y~~~~~~~~~~~~-------~~g---~~~~~~~~~-----------d~~~l~~~l  136 (301)
                      +.+.+        + +.+|+.....||+.......+..       .++   ..+..++..           +++.+++.+
T Consensus       121 lklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i  200 (429)
T PRK06173        121 MKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLL  200 (429)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHH
Confidence            33321        2 45788889999985321111100       000   011122211           355566666


Q ss_pred             C---CCceEEEEeCC-CCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-ccccCc---cCCC--CcEEEecccccc
Q 022194          137 G---PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP---LELG--ADIVMHSATKFI  202 (301)
Q Consensus       137 ~---~~~~~v~i~~~-~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~~~---~~~~--~di~~~S~sK~~  202 (301)
                      .   +++.+|+++.. ....|...+    +++|.++|++||+++|+||++.. |..+..   ...+  .|+++  ++|.+
T Consensus       201 ~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l  278 (429)
T PRK06173        201 EQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMC--IGKAL  278 (429)
T ss_pred             HhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCEEE--eehhh
Confidence            4   57889999975 676677643    89999999999999999999842 111111   1233  45554  99999


Q ss_pred             cCCCCc-eeeEEEEcchhHHHHHHH-----hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          203 AGHSDV-MAGVLAVKGERLAKELYF-----LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       203 ~g~~g~-~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      +|  |+ ..+.++.++ .+.+.+..     ..+..+...++..++++++.++.+.  ...++..++.+++++.|++
T Consensus       279 ~g--G~~p~~a~~~~~-~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  351 (429)
T PRK06173        279 TG--GYLTLSATITTE-AIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQELAP  351 (429)
T ss_pred             hC--CccccceEEecH-HHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            54  42 356666664 44444321     1222334567888888888877764  3457777777888888764

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.53  E-value=2.5e-13  Score=129.11  Aligned_cols=149  Identities=21%  Similarity=0.258  Sum_probs=115.8

Q ss_pred             chHHHHHHHHHhhcCCCceEEec-chHHHH-HHHHhc----c----CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEe
Q 022194           55 PTRDALESLLAKLDKADRALCFT-SGMAAL-AAVTHL----L----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~-sG~~ai-~~~~~~----~----~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~  124 (301)
                      ....++++++++++|.+.+-+.. +|+.+- ..++++    .    ...++|+++...|+...    ..+...|++++.+
T Consensus       543 q~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNp----asa~~~GieVv~V  618 (954)
T PRK12566        543 AMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNP----ASAQMAGMRVVIV  618 (954)
T ss_pred             HHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCH----HHHHHCCCEEEEe
Confidence            34788999999999999766655 566443 233222    1    12467889998887775    3355679999999


Q ss_pred             cCC-----CHHHHHhhcC---CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCc--cccCccCCCCcEE
Q 022194          125 NTC-----DLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP--VLSRPLELGADIV  194 (301)
Q Consensus       125 ~~~-----d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~--~~~~~~~~~~di~  194 (301)
                      +.+     |+++|+++++   +++++|++++|++-.+...++++|+++||++|+++++|.++..+  ....+.+.|+|++
T Consensus       619 p~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~  698 (954)
T PRK12566        619 ECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVS  698 (954)
T ss_pred             ccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEE
Confidence            874     8999999987   68888999999886555567999999999999999999998743  3445678999999


Q ss_pred             EecccccccCCCC
Q 022194          195 MHSATKFIAGHSD  207 (301)
Q Consensus       195 ~~S~sK~~~g~~g  207 (301)
                      ++++||+|++|.|
T Consensus       699 ~~s~HKtf~~P~G  711 (954)
T PRK12566        699 HMNLHKTFCIPHG  711 (954)
T ss_pred             EecCCcccCcCcc
Confidence            9999999987654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.53  E-value=5.2e-13  Score=129.11  Aligned_cols=193  Identities=20%  Similarity=0.220  Sum_probs=137.3

Q ss_pred             eeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCC-------chHHHHHHHHHhhcCCC--ceEEecchHHHH
Q 022194           13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-------PTRDALESLLAKLDKAD--RALCFTSGMAAL   83 (301)
Q Consensus        13 ~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~-------~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai   83 (301)
                      +.+|. +..|++...++++.......++    ....|.+|..       ....+++..++++.|++  ++-++.++|++.
T Consensus       104 ~~~fi-G~G~y~~~~P~~v~~~i~~~~~----~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaa  178 (993)
T PLN02414        104 FKSYI-GMGYYNTHVPPVILRNILENPG----WYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAA  178 (993)
T ss_pred             ccccc-CCCCCCccCCHHHHHHHHhChH----HHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHH
Confidence            45555 5566666556666455444443    2234555522       22567778899999987  677777778766


Q ss_pred             H-HHHhc-cCC--CCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 022194           84 A-AVTHL-LGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (301)
Q Consensus        84 ~-~~~~~-~~~--g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~  159 (301)
                      . ++++. +++  +++|++++..|+.+...++..++..|++++.++.++.+    ...+.+..+++..|++ +|.+.|++
T Consensus       179 ea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~----~~~~~v~~vlvq~P~~-~G~v~dv~  253 (993)
T PLN02414        179 EAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD----YSSGDVCGVLVQYPAT-DGEVLDYA  253 (993)
T ss_pred             HHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc----cccCceEEEEEecCCC-CeEEcCHH
Confidence            4 33333 343  47899999999999999988899999999999865422    1233455666666655 89999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCc--cccCccCCCCcEEEecccccc-----cCCCCceeeEEEEcchh
Q 022194          160 KIAEMAHAHGALLLVDNSIMSP--VLSRPLELGADIVMHSATKFI-----AGHSDVMAGVLAVKGER  219 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~--~~~~~~~~~~di~~~S~sK~~-----~g~~g~~~g~~~~~~~~  219 (301)
                      +|+++||++|+++++ .+...+  ....+.+.|+|+++++.+||.     +||   ..|+++++++.
T Consensus       254 ~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP---~aGflavr~~~  316 (993)
T PLN02414        254 EFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGP---HAAFLATSQEY  316 (993)
T ss_pred             HHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCC---CeeEEEECHHH
Confidence            999999999999999 555433  333577889999999999996     443   37999998653

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.53  E-value=5.5e-13  Score=121.24  Aligned_cols=266  Identities=14%  Similarity=0.147  Sum_probs=154.0

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+  +........+..+...++.+.|.++..  .+.+.+++||++|+.+.
T Consensus        47 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~ql~--~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~A  123 (466)
T PRK07030         47 KRYLDAVSSWWVNVFGHANPRINQRIK-DQVD--QLEHVILAGFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVA  123 (466)
T ss_pred             CEEEEcchhHHhhcCCCCCHHHHHHHH-HHHH--hcCCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHH
Confidence            367787533  3447877666555432 2211  111111112234567888899888763  45788889999998644


Q ss_pred             Hhcc---------CCCCeEEEcCCCCccHHHHHhhhccc------CC---cEEEEecCC-----------------CHHH
Q 022194           87 THLL---------GTGEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTC-----------------DLDE  131 (301)
Q Consensus        87 ~~~~---------~~g~~Vlv~~~~y~~~~~~~~~~~~~------~g---~~~~~~~~~-----------------d~~~  131 (301)
                      +.+.         ..+.+|+.....||+.......+...      ++   ..+..++..                 +++.
T Consensus       124 lKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~  203 (466)
T PRK07030        124 LKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAH  203 (466)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHH
Confidence            4432         12457888899999875332111110      00   011112111                 2455


Q ss_pred             HHhhcC---CCceEEEEeC-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-c---cccCccCCCCcEEEeccc
Q 022194          132 VASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-P---VLSRPLELGADIVMHSAT  199 (301)
Q Consensus       132 l~~~l~---~~~~~v~i~~-~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~---~~~~~~~~~~di~~~S~s  199 (301)
                      +++.+.   +++.+|+++. .....|.+.+    +++|.++|++||+++|+||++.. |   .+......+....+.+++
T Consensus       204 le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~g  283 (466)
T PRK07030        204 MEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLS  283 (466)
T ss_pred             HHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEeee
Confidence            666664   5788999997 4666677653    89999999999999999999753 2   222222345444444589


Q ss_pred             ccccCCCCceeeEEEEcchhHHHHHHH-------hhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHHh
Q 022194          200 KFIAGHSDVMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       200 K~~~g~~g~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~  270 (301)
                      |.++|. -+..|.++++++ +.+.+..       ..+..+.+.++..++++...++.+.+  ..++..+..+++.+.|++
T Consensus       284 Kgl~gG-~~Pi~av~~~~e-i~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~  361 (466)
T PRK07030        284 KALTGG-YLPLAAVLTTDT-VYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAH  361 (466)
T ss_pred             hhccCC-cccceEEEecHH-HHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            999652 124677777654 4443321       12333445678888888777776632  345555555666666654


Q ss_pred             ---CCCcceEecCC
Q 022194          271 ---HPRVKKVNYAG  281 (301)
Q Consensus       271 ---~~~v~~v~~p~  281 (301)
                         ++.+..++..|
T Consensus       362 l~~~~~v~~vrG~G  375 (466)
T PRK07030        362 LADHPHVAEVRQTG  375 (466)
T ss_pred             HhcCCCEEEeEece
Confidence               45554454443

>PRK07481 hypothetical protein; Provisional

Probab=99.52  E-value=9.1e-13  Score=119.50  Aligned_cols=266  Identities=16%  Similarity=0.103  Sum_probs=154.6

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCcccc-CCCCchHHHHHHHHHhhcC---CCceEEecchHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK---ADRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~   84 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+  ........ ...++...++.+.|.++++   .+.+.+++||++|+.
T Consensus        42 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~ql~--~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve  118 (449)
T PRK07481         42 KKLLDGVGGLWNVNVGHNREEVKEAIV-RQLD--ELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVE  118 (449)
T ss_pred             CEEEECchhHHhhcCCCCCHHHHHHHH-HHHH--hccceecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHH
Confidence            468888532  3458887766654432 2211  11111111 1245668889999998873   456788899999986


Q ss_pred             HHHhccC--------C-CCeEEEcCCCCccHHHHHhhhcc-----------cCCcEEEEec------C--CCHHH-----
Q 022194           85 AVTHLLG--------T-GEEIVAGDDLYGGTDRLLSRVTP-----------KTGVVVKRVN------T--CDLDE-----  131 (301)
Q Consensus        85 ~~~~~~~--------~-g~~Vlv~~~~y~~~~~~~~~~~~-----------~~g~~~~~~~------~--~d~~~-----  131 (301)
                      +.+++.+        + ..+|+.....||+.......+..           ..|+.....+      .  .|.+.     
T Consensus       119 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~  198 (449)
T PRK07481        119 TALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARIC  198 (449)
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHH
Confidence            4444321        2 35799999999996532111110           0122211111      1  13333     


Q ss_pred             ---HHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCCCCcEEEe
Q 022194          132 ---VASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELGADIVMH  196 (301)
Q Consensus       132 ---l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~~~di~~~  196 (301)
                         +++.+.    +++.+|+++......|.+.+    +++|.++|++||+++|.||++... ...   .....+....+.
T Consensus       199 ~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv  278 (449)
T PRK07481        199 ARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIM  278 (449)
T ss_pred             HHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEE
Confidence               333332    57899999988877777654    899999999999999999997532 221   222344444445


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHH-------hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEF  267 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~  267 (301)
                      +++|.++|. -+..|.++++++ +.+.+..       ..+..+.+-++..++++++.++.+.  ...++..+..+++.+.
T Consensus       279 ~~gKgl~gG-~~Pi~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~  356 (449)
T PRK07481        279 CLAKGITSG-YVPLGATMVNAR-IADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEG  356 (449)
T ss_pred             EEeecccCC-CcCceEEEEcHH-HHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            589999652 124677777654 5454332       1223344557888888877777653  2345555666666666


Q ss_pred             HHh----CCCcceEecCC
Q 022194          268 LAS----HPRVKKVNYAG  281 (301)
Q Consensus       268 l~~----~~~v~~v~~p~  281 (301)
                      |++    ++.+..++..|
T Consensus       357 L~~l~~~~~~i~~vrG~G  374 (449)
T PRK07481        357 LQPLKERFELVGDVRGKG  374 (449)
T ss_pred             HHHHhhcCCCeEEEeecc
Confidence            654    45455555444

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.52  E-value=2.9e-13  Score=119.35  Aligned_cols=202  Identities=15%  Similarity=0.115  Sum_probs=137.5

Q ss_pred             HHHHHHHHHhhcCC-C--ceEEe-cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           57 RDALESLLAKLDKA-D--RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~-~--~~i~~-~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+++++.++++++. +  +++++ ++|+.++. ++..++.+|+++++......+..  |..+++..|.. ..+..+    
T Consensus        50 ~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r--~~~~a~~~g~~-~~~~~~~~~g  126 (360)
T PRK05355         50 AEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKK--AIKEAKKYGEV-NVAASSEDDG  126 (360)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhCCc-eEEecccccC
Confidence            78888999999996 3  34555 44467785 77889999999887665544443  34677777754 333221    


Q ss_pred             --CHHHHHh-hcCCCceEEEEeCCCCCccccc-cHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEeccccccc
Q 022194          128 --DLDEVAS-AIGPWTKLVWVESPTNPRQQIC-DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 --d~~~l~~-~l~~~~~~v~i~~~~np~G~~~-~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~  203 (301)
                        +..++++ .+++++++|.+++..++||... |+++|      +|+++++|.+.+.+...-..+ ..|++++|.+|++ 
T Consensus       127 ~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~-~~d~~~~ssqK~l-  198 (360)
T PRK05355        127 FTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVS-KFGLIYAGAQKNI-  198 (360)
T ss_pred             CCCCCChhhccCCCCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHH-HccEEEEeccccc-
Confidence              2334444 7777899999999999999998 77776      899999999999887653322 2469999999999 


Q ss_pred             CCCCceeeEEEEcchhHHHHHHH-----------hh-hhcCCCCCHHhHHHHHccccc------HHHHHHHHHHHHHHHH
Q 022194          204 GHSDVMAGVLAVKGERLAKELYF-----------LQ-NAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIA  265 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~  265 (301)
                      ||+|+  |+++.+++.+.+ +..           .. .....+.+....+++.++++.      ++.+.++..+.+++++
T Consensus       199 gP~Gl--g~l~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~  275 (360)
T PRK05355        199 GPAGL--TIVIVREDLLGR-ALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLY  275 (360)
T ss_pred             cCCce--EEEEECHHHHhh-cccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            59884  888888765422 211           01 111234444444444444443      4556677777888888


Q ss_pred             HHHHhCC
Q 022194          266 EFLASHP  272 (301)
Q Consensus       266 ~~l~~~~  272 (301)
                      +.|++++
T Consensus       276 ~~l~~~~  282 (360)
T PRK05355        276 DAIDSSD  282 (360)
T ss_pred             HHHHhCC
Confidence            8888765

>PRK07483 hypothetical protein; Provisional

Probab=99.52  E-value=4.6e-13  Score=121.12  Aligned_cols=266  Identities=14%  Similarity=0.112  Sum_probs=156.2

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      ..++||.++  +.-+|..++.+..+.. .+.+  .........+.++...++.+.|.+...  .+.+.+++||++|+.+.
T Consensus        30 ~~ylD~~~g~~~~~lGh~~p~v~~av~-~ql~--~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~A  106 (443)
T PRK07483         30 KRYLDASGGAAVSCLGHSHPRVIAAIH-AQID--RLAYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAA  106 (443)
T ss_pred             CEEEEcCccHhhhccCCCCHHHHHHHH-HHHH--hccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHH
Confidence            478898644  5558887766665432 2211  111111112345667889999988763  46788889999998543


Q ss_pred             Hhc---c------CCCCeEEEcCCCCccHHHHHhhhcc------cCC---cEEEEecC----CC--------------HH
Q 022194           87 THL---L------GTGEEIVAGDDLYGGTDRLLSRVTP------KTG---VVVKRVNT----CD--------------LD  130 (301)
Q Consensus        87 ~~~---~------~~g~~Vlv~~~~y~~~~~~~~~~~~------~~g---~~~~~~~~----~d--------------~~  130 (301)
                      +.+   .      ....+|+.....||+.......+..      ..+   ..+..++.    .+              ++
T Consensus       107 lklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (443)
T PRK07483        107 LKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLAD  186 (443)
T ss_pred             HHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHH
Confidence            332   2      1235788889999988532211110      000   01112221    11              24


Q ss_pred             HHHhhcC----CCceEEEEeCCCCC-cccccc----HHHHHHHHHHcCCEEEEeCCcCC-ccc---cCccCCCCcEEEec
Q 022194          131 EVASAIG----PWTKLVWVESPTNP-RQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVL---SRPLELGADIVMHS  197 (301)
Q Consensus       131 ~l~~~l~----~~~~~v~i~~~~np-~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~---~~~~~~~~di~~~S  197 (301)
                      ++++.+.    +++.+|+++..... .|.+.+    +++|.++|++||+++|+||++.. |..   ......+....+.+
T Consensus       187 ~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~  266 (443)
T PRK07483        187 ELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVT  266 (443)
T ss_pred             HHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeee
Confidence            5665553    57889999987653 466653    89999999999999999999753 222   22223344444555


Q ss_pred             ccccccCCCCc-eeeEEEEcchhHHHHHHHh----hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHH-
Q 022194          198 ATKFIAGHSDV-MAGVLAVKGERLAKELYFL----QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA-  269 (301)
Q Consensus       198 ~sK~~~g~~g~-~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~-  269 (301)
                      ++|.++|  |+ ..|.++.+++ +.+.+...    .+.++.+-++..++++++.++.+.  ...++..+..+++++.|+ 
T Consensus       267 ~gK~l~g--G~~Pi~av~~~~~-i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~  343 (443)
T PRK07483        267 IAKGLGA--GYQPIGAVLASDR-IYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRE  343 (443)
T ss_pred             ehhhhcc--CccccEEEEEcHH-HHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            8999965  33 4677777654 44443321    233445567777777777777653  234555555566666664 


Q ss_pred             ---hCCCcceEecCCC
Q 022194          270 ---SHPRVKKVNYAGL  282 (301)
Q Consensus       270 ---~~~~v~~v~~p~~  282 (301)
                         +++.+..++.-|+
T Consensus       344 l~~~~~~i~~vRG~Gl  359 (443)
T PRK07483        344 RLGQHPHVGDIRGRGL  359 (443)
T ss_pred             HHhcCCCeeeEeeccc
Confidence               3565656666554

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.51  E-value=9.3e-13  Score=119.73  Aligned_cols=267  Identities=14%  Similarity=0.135  Sum_probs=151.2

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC-------CCceEEecchHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-------ADRALCFTSGMA   81 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~-------~~~~i~~~sG~~   81 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+..  .......+.++...++.+.|.+.+.       .+.+.+.+||++
T Consensus        64 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~-~q~~~l--~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSE  140 (472)
T PRK08742         64 RRYLDAVSSWWTNLFGHAEPRIGAAIA-AQAGEL--EQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSA  140 (472)
T ss_pred             CEEEEcCccHHhccCCCCCHHHHHHHH-HHHHhC--CCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchH
Confidence            368888644  4457887666554432 221100  1111111245567888888888763       347888899999


Q ss_pred             HHHHHHhcc---------CCCCeEEEcCCCCccHHHHHhhhcccC------C---cEEEEecCC----------------
Q 022194           82 ALAAVTHLL---------GTGEEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTC----------------  127 (301)
Q Consensus        82 ai~~~~~~~---------~~g~~Vlv~~~~y~~~~~~~~~~~~~~------g---~~~~~~~~~----------------  127 (301)
                      |+.+.+.+.         ....+|+.....||+............      +   ..+..++..                
T Consensus       141 AvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~  220 (472)
T PRK08742        141 GVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYAL  220 (472)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHH
Confidence            986443332         124679999999999753321111000      0   011122211                


Q ss_pred             -CHHHHHhhcC---CCceEEEEeC-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-c---cccCccCCCCcEE
Q 022194          128 -DLDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-P---VLSRPLELGADIV  194 (301)
Q Consensus       128 -d~~~l~~~l~---~~~~~v~i~~-~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~---~~~~~~~~~~di~  194 (301)
                       +++.+++.+.   +++.+|+++. .....|.+.+    +++|.++|++||+++|.||++.. |   .+......|....
T Consensus       221 ~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PD  300 (472)
T PRK08742        221 QAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPD  300 (472)
T ss_pred             HHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCC
Confidence             1455666663   5788999987 4666676643    89999999999999999999753 2   2222233455555


Q ss_pred             EecccccccCCCCceeeEEEEcchhHHHHHHH------hhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHH
Q 022194          195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYF------LQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAE  266 (301)
Q Consensus       195 ~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~  266 (301)
                      +.+++|.++|. -+..+.++++++ +.+.+..      ..+..+.+-++..++++++.++.+.+  ..++..+..+++.+
T Consensus       301 iv~~gKgl~gG-~~Plaav~~~~e-i~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~  378 (472)
T PRK08742        301 LLCLSKGLTGG-FLPLSAVLATQQ-LYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQ  378 (472)
T ss_pred             EEEEcccccCC-CCCcceeeccHH-HHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            55589999653 124577776644 4443321      11223344577778787777766532  22333333333333


Q ss_pred             ---HHHhCCCcceEecCCC
Q 022194          267 ---FLASHPRVKKVNYAGL  282 (301)
Q Consensus       267 ---~l~~~~~v~~v~~p~~  282 (301)
                         .+++++.|..++.-|+
T Consensus       379 ~~~~~~~~~~i~dvRG~Gl  397 (472)
T PRK08742        379 LAAQIGEHPHVADVRQAGM  397 (472)
T ss_pred             HHHHHhcCCCeeeEeccce
Confidence               3344665656655544

>PRK06917 hypothetical protein; Provisional

Probab=99.50  E-value=2e-12  Score=117.12  Aligned_cols=264  Identities=13%  Similarity=0.092  Sum_probs=155.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCcccc-CCCCchHHHHHHHHHhhcCC--CceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~~   85 (301)
                      ..+|||.++  +.-+|..++.+..+.. .+.+  . ..+.+. .+..+...++.+.|.+.+..  +.+++++||++|+.+
T Consensus        31 ~~ylD~~~g~~~~~lGh~hp~v~~Ai~-~ql~--~-~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~  106 (447)
T PRK06917         31 NKYFDGSSGAVTAGIGHGVKEIADAIK-EQAE--E-VSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANET  106 (447)
T ss_pred             CEEEECchhHHhccCCCCCHHHHHHHH-HHHh--h-CcCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHH
Confidence            478888633  3448887766665532 2211  1 122221 23456688899999988743  467788999999865


Q ss_pred             HHhcc---------CCCCeEEEcCCCCccHHHHHhhhcccC-----------CcEEEEecC---------------CCHH
Q 022194           86 VTHLL---------GTGEEIVAGDDLYGGTDRLLSRVTPKT-----------GVVVKRVNT---------------CDLD  130 (301)
Q Consensus        86 ~~~~~---------~~g~~Vlv~~~~y~~~~~~~~~~~~~~-----------g~~~~~~~~---------------~d~~  130 (301)
                      .+++.         ..+.+|+.....||+............           +......+.               .+++
T Consensus       107 AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  186 (447)
T PRK06917        107 AMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACAT  186 (447)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHH
Confidence            44443         224679999999999764322211100           111111110               0235


Q ss_pred             HHHhhcC----CCceEEEEeCCCCCc-ccccc----HHHHHHHHHHcCCEEEEeCCcCCc-cccC---ccCCCCcEEEec
Q 022194          131 EVASAIG----PWTKLVWVESPTNPR-QQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLSR---PLELGADIVMHS  197 (301)
Q Consensus       131 ~l~~~l~----~~~~~v~i~~~~np~-G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~~---~~~~~~di~~~S  197 (301)
                      .+++.++    +++.+|+++...... |.+.+    +++|.++|++||+++|+||++... ....   ....+....+.+
T Consensus       187 ~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~  266 (447)
T PRK06917        187 ELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMT  266 (447)
T ss_pred             HHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEE
Confidence            5666664    468899999776544 45443    899999999999999999997632 2211   122344444456


Q ss_pred             ccccccCCCCc-eeeEEEEcchhHHHHHHHh----hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          198 ATKFIAGHSDV-MAGVLAVKGERLAKELYFL----QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       198 ~sK~~~g~~g~-~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      ++|.+++  |+ ..+.+++++ .+.+.+...    .+..+...++..++++++.++.+.  +..++..+..++|++.|++
T Consensus       267 ~gK~l~~--G~~Pi~a~~~~~-~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~  343 (447)
T PRK06917        267 LGKGLGA--GYTPIAATVVSD-RVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQK  343 (447)
T ss_pred             eeehhcc--CCcceEEEEEcH-HHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            8999965  32 467777764 454543321    122344567888888877777653  3445666666666666654


Q ss_pred             ----CCCcceEecCC
Q 022194          271 ----HPRVKKVNYAG  281 (301)
Q Consensus       271 ----~~~v~~v~~p~  281 (301)
                          ++.+..++..|
T Consensus       344 l~~~~~~i~~vrG~G  358 (447)
T PRK06917        344 VQQQSTIIGDVRGKG  358 (447)
T ss_pred             HHhcCCCEEEEeecc
Confidence                44444444433

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.50  E-value=3.6e-12  Score=104.51  Aligned_cols=180  Identities=21%  Similarity=0.303  Sum_probs=118.3

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecchH-HHH-HHHHhcc---CCCC--eEEE-cCCCCccHHHHHhhhcccCCcEEE---
Q 022194           57 RDALESLLAKLDKAD---RALCFTSGM-AAL-AAVTHLL---GTGE--EIVA-GDDLYGGTDRLLSRVTPKTGVVVK---  122 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~sG~-~ai-~~~~~~~---~~g~--~Vlv-~~~~y~~~~~~~~~~~~~~g~~~~---  122 (301)
                      .+.+.+.+.+.+|.+   +.+.+|+|+ .+. +++-.+.   ..|+  +|+. -.|.|-+|-    .+.-...+-|.   
T Consensus        80 i~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~----d~~l~~d~fVs~kP  155 (417)
T COG3977          80 IDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYA----DAGLEEDLFVSAKP  155 (417)
T ss_pred             HHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhcccc----ccccCccceeeccC
Confidence            777888888888764   678888887 444 3433332   2232  4544 357777774    22111111111   


Q ss_pred             ---EecC------CCHHHHHhhcCCCceEEEEeCCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCcccc------
Q 022194          123 ---RVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS------  184 (301)
Q Consensus       123 ---~~~~------~d~~~l~~~l~~~~~~v~i~~~~np~G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~~~------  184 (301)
                         .++.      .|++++.  +.+++.+|+++-|.||||.+.   ++.+|..+|++||+++++|.+|+.+...      
T Consensus       156 ~iel~~~g~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~  233 (417)
T COG3977         156 NIELLPAGQFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDA  233 (417)
T ss_pred             CcccccccceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccc
Confidence               1111      1566553  347899999999999999995   5888999999999999999999975432      


Q ss_pred             CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh---hcCCCCCHHhHHHHHc
Q 022194          185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---AEGSGLAPFDCWICLR  245 (301)
Q Consensus       185 ~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  245 (301)
                      .+....+.+.|.|+||.  |.+|.|.|++++++ .+.+.+.....   .......+..+..+++
T Consensus       234 ~~~w~~NiilC~SLSK~--GLPG~R~GIiIane-~viqaitnmn~iisLap~~~G~Aia~~mie  294 (417)
T COG3977         234 TPLWNENIILCMSLSKL--GLPGSRCGIIIANE-KVIQAITNMNGIISLAPGRMGPAIAAEMIE  294 (417)
T ss_pred             cccCCCCEEEEeehhhc--CCCCcceeEEEccH-HHHHHHHhccceeeecCCCccHHHHHHHhh
Confidence            24455678999999997  77889999999875 55565554432   3334455554444433

>PRK06149 hypothetical protein; Provisional

Probab=99.50  E-value=1.1e-12  Score=129.19  Aligned_cols=264  Identities=17%  Similarity=0.135  Sum_probs=156.7

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc--CCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD--KADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~--~~~~~i~~~sG~~ai~~~~~   88 (301)
                      .+++||.++..-+|..++.+..+. ..+..  ...  ..+++..+...++.+.|++.+  +.+.+++++||++|+.+.++
T Consensus       585 ~~ylD~~~~~~~lGh~hp~v~~Ai-~~q~~--~l~--~~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~Alk  659 (972)
T PRK06149        585 RSYLDMVNNVTVLGHGHPRLAAAA-ARQWS--LLN--TNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIR  659 (972)
T ss_pred             CEEEECCCCccccCCCCHHHHHHH-HHHHH--hcc--ccccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHH
Confidence            578999743333676655544433 22211  111  122334566888999999987  45688899999999864444


Q ss_pred             c---cCCCCeEEEcCCCCccHHHHHhhhcc----c--------CCcEEEEec------C--CC-----HHHHHhhc----
Q 022194           89 L---LGTGEEIVAGDDLYGGTDRLLSRVTP----K--------TGVVVKRVN------T--CD-----LDEVASAI----  136 (301)
Q Consensus        89 ~---~~~g~~Vlv~~~~y~~~~~~~~~~~~----~--------~g~~~~~~~------~--~d-----~~~l~~~l----  136 (301)
                      +   ...+++|+..+..||+.......+..    .        .++.....+      .  ++     .+++++.+    
T Consensus       660 lAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~  739 (972)
T PRK06149        660 LAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELD  739 (972)
T ss_pred             HHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHh
Confidence            2   33456788889999976422101100    0        011111111      0  11     23333332    


Q ss_pred             --CCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCccccC----ccCCCCcEEEecccccccCC
Q 022194          137 --GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR----PLELGADIVMHSATKFIAGH  205 (301)
Q Consensus       137 --~~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~-~~~~~~~----~~~~~~di~~~S~sK~~~g~  205 (301)
                        .+++.+|+++......|.+.+    +++|.++|++||+++|+||++ +.|..+.    ....|....+.+++|.+++ 
T Consensus       740 ~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~-  818 (972)
T PRK06149        740 ASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGN-  818 (972)
T ss_pred             hcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccC-
Confidence              146889999988877788876    999999999999999999998 4444332    1123444444479999965 


Q ss_pred             CCceeeEEEEcchhHHHHHHH-hhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHHh----CCCcceEe
Q 022194          206 SDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVN  278 (301)
Q Consensus       206 ~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~----~~~v~~v~  278 (301)
                       |+..|++++++ .+.+.+.. ....++.+.++..++++++.++.+.+  ..++..+..+++++.|++    ++.+..++
T Consensus       819 -G~Pl~av~~~~-~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vr  896 (972)
T PRK06149        819 -GHPLGAVITRR-EIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVH  896 (972)
T ss_pred             -CeeeEEEEEcH-HHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence             35678888875 44444332 11223456688888888888877642  234444444666666653    56555565


Q ss_pred             cCCC
Q 022194          279 YAGL  282 (301)
Q Consensus       279 ~p~~  282 (301)
                      .-|+
T Consensus       897 G~Gl  900 (972)
T PRK06149        897 GMGL  900 (972)
T ss_pred             ecce
Confidence            4444

>PRK07480 putative aminotransferase; Validated

Probab=99.49  E-value=1.6e-12  Score=117.95  Aligned_cols=267  Identities=16%  Similarity=0.156  Sum_probs=153.2

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCc-cccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPY-DYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~-~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~   85 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+  ..... .+..+.++...++.+.|.+.+.  .+.+.+++||++|+.+
T Consensus        50 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~q~~--~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~  126 (456)
T PRK07480         50 NKILDGMAGLWCVNVGYGRKELADAAA-RQMR--ELPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDT  126 (456)
T ss_pred             CEEEEccchHHHhcCCCCCHHHHHHHH-HHHH--hcCCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHH
Confidence            367787532  2337777666555432 2211  11111 1111245668889999998874  3578889999999864


Q ss_pred             HHhccC--------C-CCeEEEcCCCCccHHHHHhhhc------ccCCc---EEEEecCC---------------C--HH
Q 022194           86 VTHLLG--------T-GEEIVAGDDLYGGTDRLLSRVT------PKTGV---VVKRVNTC---------------D--LD  130 (301)
Q Consensus        86 ~~~~~~--------~-g~~Vlv~~~~y~~~~~~~~~~~------~~~g~---~~~~~~~~---------------d--~~  130 (301)
                      .+.+.+        + ..+|+.....||+.........      ...+.   .+..++..               +  .+
T Consensus       127 AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  206 (456)
T PRK07480        127 VLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAAR  206 (456)
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHH
Confidence            433221        2 3578888889998642210110      00010   11112210               1  24


Q ss_pred             HHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-Ccccc---CccCCCCcEEEecc
Q 022194          131 EVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELGADIVMHSA  198 (301)
Q Consensus       131 ~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~-~~~~~---~~~~~~~di~~~S~  198 (301)
                      .+++.+.    +++.+|+++......|.+.+    +++|.++|++||+++|+||++. .|-.+   .....|....+.++
T Consensus       207 ~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~  286 (456)
T PRK07480        207 QLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTI  286 (456)
T ss_pred             HHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeee
Confidence            5554442    57889999988877777754    9999999999999999999985 32222   22234554455669


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHH----hhhhcCCCCCHHhHHHHHcccccHHH--HHHHH-HHHHHHHHHHHHh-
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYF----LQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQ-QDNAQKIAEFLAS-  270 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~-~~~~~~l~~~l~~-  270 (301)
                      +|.++|. -+..|.+++++ .+.+.+..    ..+..+.+.++..++++++.++.+.+  ..++. .+..+++.+.|++ 
T Consensus       287 gK~l~gG-~~Pi~av~~~~-~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l  364 (456)
T PRK07480        287 AKGLTSG-YIPMGAVGVGD-RVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLREL  364 (456)
T ss_pred             ehhhccC-CccceEEEEcH-HHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999652 12356666664 45454321    12334556678888888888776632  33444 2445555555543 


Q ss_pred             --CCCcceEecCCC
Q 022194          271 --HPRVKKVNYAGL  282 (301)
Q Consensus       271 --~~~v~~v~~p~~  282 (301)
                        ++.+..++..|+
T Consensus       365 ~~~~~i~~vrG~Gl  378 (456)
T PRK07480        365 ADHPLVGEVRGVGL  378 (456)
T ss_pred             hcCCCeeeEEeecc
Confidence              555555554443

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.49  E-value=6.1e-13  Score=120.90  Aligned_cols=267  Identities=13%  Similarity=0.100  Sum_probs=153.8

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC--CceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~~~   86 (301)
                      ..++||.++  +.-+|..++.+..+.. .+.+  .........+.++...++.+.|.+++..  +.+.+++||++|+.+.
T Consensus        56 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~ql~--~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~A  132 (460)
T PRK06916         56 NEYYDGVSSIWLNVHGHQVPELDEAIR-EQLN--KIAHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIA  132 (460)
T ss_pred             CEEEEcchhHHHhhcCCCCHHHHHHHH-HHHH--hCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHH
Confidence            367777533  3346766655544332 2211  1010111112455678888999888743  5788889999998644


Q ss_pred             HhccC--------C-CCeEEEcCCCCccHHHHHhhhccc-----------CCcEEEEecC---------------CCHHH
Q 022194           87 THLLG--------T-GEEIVAGDDLYGGTDRLLSRVTPK-----------TGVVVKRVNT---------------CDLDE  131 (301)
Q Consensus        87 ~~~~~--------~-g~~Vlv~~~~y~~~~~~~~~~~~~-----------~g~~~~~~~~---------------~d~~~  131 (301)
                      +.+.+        + +.+|+.....||+.......+...           .+......+.               .+++.
T Consensus       133 lklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~  212 (460)
T PRK06916        133 IKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEE  212 (460)
T ss_pred             HHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHH
Confidence            44321        2 468999999999975332111110           1111111110               12455


Q ss_pred             HHhhcC---CCceEEEEeC-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-cccc---CccCCCCcEEEeccc
Q 022194          132 VASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELGADIVMHSAT  199 (301)
Q Consensus       132 l~~~l~---~~~~~v~i~~-~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~---~~~~~~~di~~~S~s  199 (301)
                      +++.++   +++.+|+++. +....|.+.+    +++|.++|++||+++|+||++.. |..+   .....+....+.+++
T Consensus       213 l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~g  292 (460)
T PRK06916        213 LEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAG  292 (460)
T ss_pred             HHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeee
Confidence            666664   5789999998 5776677643    89999999999999999999753 2222   122234434444589


Q ss_pred             ccccCCCCceeeEEEEcchhHHHHHHH-------hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          200 KFIAGHSDVMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       200 K~~~g~~g~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      |.++|. -+..|.++++++ +.+.+..       ..+..+.+.++..+++++..++.+.  ...++..++.+++.+.|++
T Consensus       293 K~l~gG-~~Pi~av~~~~e-i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~  370 (460)
T PRK06916        293 KGLTGG-YLPIAITVTTDE-IYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLED  370 (460)
T ss_pred             hhhhcC-ccccceeeecHH-HHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            999652 134677777754 4443321       1122334457777777777776653  3456666666677777664


Q ss_pred             ---CCCcceEecCCC
Q 022194          271 ---HPRVKKVNYAGL  282 (301)
Q Consensus       271 ---~~~v~~v~~p~~  282 (301)
                         ++.+..++.-|+
T Consensus       371 l~~~~~v~~vrG~Gl  385 (460)
T PRK06916        371 LFALKHVGDIRQLGL  385 (460)
T ss_pred             hhcCCCeEEeecCCc
Confidence               444444554443

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.49  E-value=2.1e-12  Score=107.12  Aligned_cols=214  Identities=19%  Similarity=0.200  Sum_probs=145.7

Q ss_pred             HHHHHHHHHhhcCCC-ceEEecchH-HHHH-HHHhccC--CCCeEEEcCCCCccHHH-HHhhhcccCCcEEEEecCCCHH
Q 022194           57 RDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLG--TGEEIVAGDDLYGGTDR-LLSRVTPKTGVVVKRVNTCDLD  130 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~-~~~~~~~--~g~~Vlv~~~~y~~~~~-~~~~~~~~~g~~~~~~~~~d~~  130 (301)
                      -+.+-++++.+.|+. +.++++.++ -.+. .+.+.++  +|+.|++++..-.++.. ..+..+...+.....--.+.++
T Consensus        78 p~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~  157 (407)
T COG3844          78 PERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPR  157 (407)
T ss_pred             hhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChH
Confidence            467788899999886 445555554 4453 5555544  48899998875544432 2344555554432222234678


Q ss_pred             HHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCcc-CCCCcEEEecccccccCCCCce
Q 022194          131 EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL-ELGADIVMHSATKFIAGHSDVM  209 (301)
Q Consensus       131 ~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~-~~~~di~~~S~sK~~~g~~g~~  209 (301)
                      ++++++.+++.+|++++.++-||...++.+|..++|++|++++.|=+|+.|..+-.+ ..|+|+.+.+..|++.|.||-.
T Consensus       158 ~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGap  237 (407)
T COG3844         158 ALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAP  237 (407)
T ss_pred             HHHHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCc
Confidence            999999999999999999999999999999999999999999999999999987544 5589999999999999988875


Q ss_pred             eeEEEEcchhHHHHHHHhh----------------hhcC-----CCCCH-HhHHHHHccccc-----HHHHHHHHHHHHH
Q 022194          210 AGVLAVKGERLAKELYFLQ----------------NAEG-----SGLAP-FDCWICLRGVKT-----MALRVEKQQDNAQ  262 (301)
Q Consensus       210 ~g~~~~~~~~~~~~~~~~~----------------~~~~-----~~~~~-~~~~~~~~~l~~-----~~~~~~~~~~~~~  262 (301)
                      ++..+. ++..........                ...+     ++..+ .+..++..+++.     +.+.+++......
T Consensus       238 a~l~v~-~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd  316 (407)
T COG3844         238 AGLFVA-PRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTD  316 (407)
T ss_pred             eeEEec-cccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHH
Confidence            555444 332211110000                0011     22222 223333334443     5777788888888


Q ss_pred             HHHHHHHhC
Q 022194          263 KIAEFLASH  271 (301)
Q Consensus       263 ~l~~~l~~~  271 (301)
                      ++.+.++.+
T Consensus       317 ~fieLvEa~  325 (407)
T COG3844         317 YFIELVEAR  325 (407)
T ss_pred             HHHHHHHhc
Confidence            888888764

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.48  E-value=1.2e-12  Score=115.08  Aligned_cols=202  Identities=14%  Similarity=0.075  Sum_probs=137.9

Q ss_pred             HHHHHHHHHhhcCCC---ceEE-ecchHHHHH-HHHhcc-CCCCeEEEcCCCCccHHHHHh-hhcccCCc-EEEEecCC-
Q 022194           57 RDALESLLAKLDKAD---RALC-FTSGMAALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLS-RVTPKTGV-VVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~-~~sG~~ai~-~~~~~~-~~g~~Vlv~~~~y~~~~~~~~-~~~~~~g~-~~~~~~~~-  127 (301)
                      ..++.+.|.++++.+   ++++ .+|||.++. ++..++ ++|++|++.. .|   -.-|. .+++..|+ ++..+... 
T Consensus        41 ~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~F---G~r~~~eia~~~g~~~v~~l~~~~  116 (374)
T TIGR01365        41 LAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SF---GKGWVTDVTKQLKLPDVRVLEAEY  116 (374)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HH---HHHHHHHHHHhcCCCCcEEEcCCC
Confidence            678888999999864   2344 567788885 677788 5888898753 22   22233 77777887 35555533 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEeccccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~  203 (301)
                          ++++++.  +   +.|++++..++||...|++++++..  +++++|+|.+.+.+...-..+ ++|+++.|.+|+++
T Consensus       117 g~~~~~~~ve~--~---~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d-~iDv~~tgsQK~L~  188 (374)
T TIGR01365       117 GKLPDLKKVDF--K---NDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH-KLDVVTFSWQKVLG  188 (374)
T ss_pred             CCCCCHHHcCC--C---CCEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh-HCcEEEEechhccC
Confidence                6777763  1   2367888999999999998766432  589999999999887664444 59999999999999


Q ss_pred             CCCCceeeEEEEcchhHHHHHH--------H-h------------h-hhcCCCCCHHhHHHHHcccc------cHHHHHH
Q 022194          204 GHSDVMAGVLAVKGERLAKELY--------F-L------------Q-NAEGSGLAPFDCWICLRGVK------TMALRVE  255 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~--------~-~------------~-~~~~~~~~~~~~~~~~~~l~------~~~~~~~  255 (301)
                      +|||+  ++++.+++.+.+.-.        . .            . ....++.+....+++...++      -++.+.+
T Consensus       189 ~ppGl--s~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~  266 (374)
T TIGR01365       189 GEGAH--GMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIA  266 (374)
T ss_pred             CCCce--EEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            99985  888888766533110        0 0            0 01112233333444444442      2677888


Q ss_pred             HHHHHHHHHHHHHHhCC
Q 022194          256 KQQDNAQKIAEFLASHP  272 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~~  272 (301)
                      ++.++++.+++++++..
T Consensus       267 Rh~~~a~~l~~~l~~lg  283 (374)
T TIGR01365       267 RADDNLAVLEAFVAKNN  283 (374)
T ss_pred             HHHHHHHHHHHHHHHCC
Confidence            89999999999998764

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK07036 hypothetical protein; Provisional

Probab=99.48  E-value=2.6e-12  Score=116.88  Aligned_cols=265  Identities=17%  Similarity=0.168  Sum_probs=153.1

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCcc--ccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYD--YTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~--y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~   84 (301)
                      .+++||.++  +.-+|..++.+..+.. .+..  . ..+.  +....++...++.+.|.+...  .+.+.+++||++|+.
T Consensus        51 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~q~~--~-~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve  126 (466)
T PRK07036         51 RRYLDGIGGMWCVNVGYGREEMADAIA-DQAR--R-LPYYTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVD  126 (466)
T ss_pred             CEEEECcccHHhhcCCCCCHHHHHHHH-HHHH--h-CcccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHH
Confidence            367777532  2337776555544432 2211  1 1111  111234557888888888763  356788899999986


Q ss_pred             HHHhcc---------CCCCeEEEcCCCCccHHHHHhhhcccC---------CcEEEEecCCC-----------------H
Q 022194           85 AVTHLL---------GTGEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCD-----------------L  129 (301)
Q Consensus        85 ~~~~~~---------~~g~~Vlv~~~~y~~~~~~~~~~~~~~---------g~~~~~~~~~d-----------------~  129 (301)
                      +.+++.         ....+|+.....||+.......+....         ...+..++..+                 .
T Consensus       127 ~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  206 (466)
T PRK07036        127 SALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLV  206 (466)
T ss_pred             HHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHH
Confidence            444432         113678988999999753221111110         00112221111                 2


Q ss_pred             HHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-Ccccc---Ccc-CCCCcEEEe
Q 022194          130 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPL-ELGADIVMH  196 (301)
Q Consensus       130 ~~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~-~~~~~---~~~-~~~~di~~~  196 (301)
                      +.+++.+.    +++.+|+++......|...+    +++|.++|++||+++|+||++. .|..+   ... ..|....+.
T Consensus       207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDiv  286 (466)
T PRK07036        207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDII  286 (466)
T ss_pred             HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEE
Confidence            33444442    57889999988877788765    9999999999999999999985 33322   222 235444455


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHH-------hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEF  267 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~  267 (301)
                      +++|.++|. -+..|.+++++ .+.+.+..       ..+..+.+.++..+++++..++.+.  +..++..+..+++++.
T Consensus       287 t~gK~l~gG-~~Pi~av~~~~-~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~  364 (466)
T PRK07036        287 TFAKGLTSG-YQPLGAVIISE-RLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEER  364 (466)
T ss_pred             EEccccccC-ccccEEEEEcH-HHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            689999652 12357777764 45454331       1222344567888888888777663  3445666666666666


Q ss_pred             HHh---CCCcceEecCC
Q 022194          268 LAS---HPRVKKVNYAG  281 (301)
Q Consensus       268 l~~---~~~v~~v~~p~  281 (301)
                      |+.   ++.+..++..|
T Consensus       365 L~~l~~~~~v~~vrG~G  381 (466)
T PRK07036        365 LASLRELPLVGDVRGDH  381 (466)
T ss_pred             HHHhccCCCEEEEEeec
Confidence            654   45454454443

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.48  E-value=2.2e-12  Score=116.37  Aligned_cols=252  Identities=12%  Similarity=0.039  Sum_probs=144.4

Q ss_pred             ceeeecCC--CCCCCCccccCeeecceeecCCCCCCCCccc-cCCCCchHHHHHHHHHhhcCC--CceEEecchHHHHHH
Q 022194           11 TLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDY-TRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~--~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y-~~~g~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~~   85 (301)
                      .+++||.+  .+.++|..++. +..+...+.+   ...+.. ....++...++.+.+.+++..  +.+.+++||++|+..
T Consensus        45 ~~ylD~~~g~~~~~lGh~~p~-v~~ai~~~~~---~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~  120 (427)
T TIGR00508        45 RRLIDGMSSWWAAIHGYNHPR-LNAAAQKQID---KMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEV  120 (427)
T ss_pred             CEEEEccchHHHhcCCCCCHH-HHHHHHHHHH---hcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHH
Confidence            46888862  23378855444 4433222211   111111 112345577788888887743  478888999998853


Q ss_pred             HHhccC--------C-CCeEEEcCCCCccHHHHHhhhccc------------CCcEEEEec---------CCCHHHHHhh
Q 022194           86 VTHLLG--------T-GEEIVAGDDLYGGTDRLLSRVTPK------------TGVVVKRVN---------TCDLDEVASA  135 (301)
Q Consensus        86 ~~~~~~--------~-g~~Vlv~~~~y~~~~~~~~~~~~~------------~g~~~~~~~---------~~d~~~l~~~  135 (301)
                      .+.+.+        + ..+|+.....||+...........            .+......+         ..|.+++++.
T Consensus       121 AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~  200 (427)
T TIGR00508       121 ALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKL  200 (427)
T ss_pred             HHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHH
Confidence            333211        2 367999999999875322111110            000011111         1145566666


Q ss_pred             cC---CCceEEEEeCC-CCCccccc----cHHHHHHHHHHcCCEEEEeCCcCC-cccc---CccCC--CCcEEEeccccc
Q 022194          136 IG---PWTKLVWVESP-TNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLEL--GADIVMHSATKF  201 (301)
Q Consensus       136 l~---~~~~~v~i~~~-~np~G~~~----~l~~l~~l~~~~~~~li~D~~~~~-~~~~---~~~~~--~~di~~~S~sK~  201 (301)
                      +.   +++.+|+++.. ....|...    .+++|.++|++||+++|+||++.. |..+   .....  ..|+++  ++|.
T Consensus       201 l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~  278 (427)
T TIGR00508       201 MELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILC--VGKA  278 (427)
T ss_pred             HHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEE--echh
Confidence            64   46778888875 55445433    499999999999999999999842 2211   11122  356555  8999


Q ss_pred             ccCCCCc-eeeEEEEcchhHHHHHHHhh-----hhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhC
Q 022194          202 IAGHSDV-MAGVLAVKGERLAKELYFLQ-----NAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       202 ~~g~~g~-~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++|  |+ ..+.++.+ +.+.+.+....     ...+...++..++++++.++.+.  +..++..++.+++++.|+++
T Consensus       279 l~g--G~~p~~a~~~~-~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l  353 (427)
T TIGR00508       279 LTG--GYMTLSATVTT-DKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKRELSPL  353 (427)
T ss_pred             hhc--CcccceEEEEc-HHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence            954  43 35666665 44555443211     22334457777777777777553  34567777777888877654

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.47  E-value=3e-12  Score=116.33  Aligned_cols=265  Identities=17%  Similarity=0.119  Sum_probs=152.7

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC----ceEEe-cchHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD----RALCF-TSGMAAL   83 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~----~~i~~-~sG~~ai   83 (301)
                      .++|||.++  +--+|..++.+..+.. .+.+  +...+....+.++...++.+.|.+.+...    ..+++ +||++|+
T Consensus        58 ~~ylD~~~g~~~~~lGH~~p~v~~Ai~-~q~~--~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAv  134 (459)
T PRK06931         58 NQYLDCLAGAGTLALGHNHPDVLQSIQ-DVLT--SGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAV  134 (459)
T ss_pred             CEEEEcccchhhccCCCCCHHHHHHHH-HHHh--hhccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHH
Confidence            478888643  3347877666555432 2211  11111111224566788899998887422    24455 7999998


Q ss_pred             HHHHhc---cCCCCeEEEcCCCCccHHHHHhhhcccC---------CcEEEEecCC-------------CHHHH----Hh
Q 022194           84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTC-------------DLDEV----AS  134 (301)
Q Consensus        84 ~~~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~~---------g~~~~~~~~~-------------d~~~l----~~  134 (301)
                      .+.+++   ...+++|+.....||+.......+....         ...+..++..             +.+.+    ++
T Consensus       135 e~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (459)
T PRK06931        135 EAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFEN  214 (459)
T ss_pred             HHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHH
Confidence            644443   3345689999999999864432211100         0112222211             12222    22


Q ss_pred             hcC------CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-c---cccCccCCCCcEEEecccc
Q 022194          135 AIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-P---VLSRPLELGADIVMHSATK  200 (301)
Q Consensus       135 ~l~------~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~---~~~~~~~~~~di~~~S~sK  200 (301)
                      .+.      +++.+|+++......|.+.+    +++|.++|++||+++|.||++.. |   .+......+....+.+++|
T Consensus       215 ~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK  294 (459)
T PRK06931        215 FIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSK  294 (459)
T ss_pred             HHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEecc
Confidence            322      35889999988776777653    89999999999999999999753 2   2222223454445555899


Q ss_pred             cccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHH----hCCCc
Q 022194          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRV  274 (301)
Q Consensus       201 ~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~----~~~~v  274 (301)
                      .++|  |+..|.++.+++ + +.+....+..+.+-++..++++++.++.+.+  ..++..+..+++.+.|+    ++|.+
T Consensus       295 ~l~g--G~Pi~av~~~~~-~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i  370 (459)
T PRK06931        295 AVGG--GLPLAVLGIKKE-F-DAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCI  370 (459)
T ss_pred             cccC--CcceeeeeeHHH-H-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            9965  356777776643 3 3322222333455677888887777776532  33444555555555554    35655


Q ss_pred             ceEecCCC
Q 022194          275 KKVNYAGL  282 (301)
Q Consensus       275 ~~v~~p~~  282 (301)
                      ..++..|+
T Consensus       371 ~~vrG~Gl  378 (459)
T PRK06931        371 GNVRGRGL  378 (459)
T ss_pred             EeEecCce
Confidence            55655554

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.2e-13  Score=116.72  Aligned_cols=247  Identities=16%  Similarity=0.188  Sum_probs=174.7

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC------CCch-HHHHHHHHHhhcCCCceEEecchHHHH-
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNPT-RDALESLLAKLDKADRALCFTSGMAAL-   83 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~------g~~~-~~~l~~~l~~~~~~~~~i~~~sG~~ai-   83 (301)
                      .++||+ +++|+|+...+.+...+-..-     ..|+.+.+      |.-. .-.+++.|++++|.++.++.+-|-+++ 
T Consensus        95 ~~~N~a-S~NfL~l~~~~~ike~a~~~l-----rkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~aivYs~gF~ti~  168 (467)
T KOG1358|consen   95 DVLNFA-SANFLGLIENEEIKEEASFTL-----RKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTEDAIVYSYGFSTIE  168 (467)
T ss_pred             eeeccc-chhhhhhcccHHHHHHHHHHH-----HHhCCCCcCCCcccccceeecccHHHHHHhhCCcceeeeccccchhh
Confidence            788999 899999998887765432211     12222222      3333 668999999999999999999998777 


Q ss_pred             HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCC-------------ceEEEEeCCCC
Q 022194           84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW-------------TKLVWVESPTN  150 (301)
Q Consensus        84 ~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~-------------~~~v~i~~~~n  150 (301)
                      +++.++.+.||.|.+..-......    ..++...-.+.+...+|+++++..+.+.             -+.|+++....
T Consensus       169 S~ipafsKrGDIi~~de~~nfaIq----~GlqlSRS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~  244 (467)
T KOG1358|consen  169 SAIPAFSKRGDIIFVDEAVNFAIQ----KGLQLSRSTISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYA  244 (467)
T ss_pred             hcchhhhccCcEEEEehhhhHHHH----HHHhhhhheeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeecc
Confidence            588999999999888766655553    4445556677778888888888777532             35777888888


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCCcCCccccCc----------cCCCCcEEEecccccccCCCCceeeEEEEcchh-
Q 022194          151 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGER-  219 (301)
Q Consensus       151 p~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~----------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~-  219 (301)
                      ++|.+.|+.+|.++..+|...+|.||.++.|..+..          .....|++++|+.-+++..    +|+.+++.-. 
T Consensus       245 N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~----GgFc~G~~~i~  320 (467)
T KOG1358|consen  245 NTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASG----GGFCAGKSFIA  320 (467)
T ss_pred             CCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccccccccc----CceeecceeeE
Confidence            899999999999999999999999999987766531          1224689999999888543    4666664322 


Q ss_pred             HHHHHHHhhhhcCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhCC
Q 022194          220 LAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      ..+++......+...+++..+.++...+..+   .+..+.+......+...|+...
T Consensus       321 ~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~s  376 (467)
T KOG1358|consen  321 DHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNS  376 (467)
T ss_pred             eeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhhcCC
Confidence            2333333444444566776666666665544   3345566676677777777654

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.44  E-value=1.1e-11  Score=105.46  Aligned_cols=274  Identities=16%  Similarity=0.152  Sum_probs=160.3

Q ss_pred             ceeeecC--CCCCCCCccccCeeecceeecCCCC-CCCCccccCC-CCch-HHHHHHHHHhhcCCC---------ceEEe
Q 022194           11 TLLMNFS--NEFDPYGALSTPLYQTATFKQPSAT-ENGPYDYTRS-GNPT-RDALESLLAKLDKAD---------RALCF   76 (301)
Q Consensus        11 ~~~~~~~--~~~~~~g~~~~p~~~~~~~~~~~~~-~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~---------~~i~~   76 (301)
                      ...+|++  ...|-.|  ..|++++......... +.....|-+. |.+. .+++.+.   +||.+         ..+=+
T Consensus        26 ~~KVNLgIGvY~de~G--k~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~l---lFG~d~~~l~~~Rv~t~Qt  100 (396)
T COG1448          26 PNKVNLGIGVYKDEDG--KTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKL---LFGADSPALAEDRVATVQT  100 (396)
T ss_pred             cCeeeeeeeeeeCCCC--CcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHH---hcCCCcHHHHhhhHhheec
Confidence            3455554  3444455  5687776532222221 2233344443 6555 3333333   35543         23446


Q ss_pred             cchHHHHHHH---HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcC---CCceEE
Q 022194           77 TSGMAALAAV---THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLV  143 (301)
Q Consensus        77 ~sG~~ai~~~---~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~---~~~~~v  143 (301)
                      .+||.|+...   +.-..+...|++++|.|+.+.    .+++..|.++...+.-       |++.+.+.++   ++..++
T Consensus       101 ~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~----~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvL  176 (396)
T COG1448         101 LGGTGALRVAADFLARFFPDATVWISDPTWPNHK----AIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVL  176 (396)
T ss_pred             CCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHH----HHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEE
Confidence            7889888533   333456678999999999997    6777889888777743       6777777665   344444


Q ss_pred             EEeCCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCcccc---C------ccCCCC-cEEEecccccccCCCCcee
Q 022194          144 WVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS---R------PLELGA-DIVMHSATKFIAGHSDVMA  210 (301)
Q Consensus       144 ~i~~~~np~G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~~~---~------~~~~~~-di~~~S~sK~~~g~~g~~~  210 (301)
                      +-..+|||||.-.   ..++|+++.++.+.+-++|-+|-...-+   +      ....+. -+++.|+||.| |.-|=|.
T Consensus       177 LH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnf-gLYgERV  255 (396)
T COG1448         177 LHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNF-GLYGERV  255 (396)
T ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhh-hhhhhcc
Confidence            5568899999986   4788999999999999999997432211   1      111122 68999999999 4555566


Q ss_pred             eEEEE--cchhHHHHH----HHhhhhcCCCCCHHhHHHH---H-------cccccHHHHHHHHHHHHHHHHHHHHhCC--
Q 022194          211 GVLAV--KGERLAKEL----YFLQNAEGSGLAPFDCWIC---L-------RGVKTMALRVEKQQDNAQKIAEFLASHP--  272 (301)
Q Consensus       211 g~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~-------~~l~~~~~~~~~~~~~~~~l~~~l~~~~--  272 (301)
                      |.+..  .+++...+.    +......-..++...+...   +       .+.+++.+.++++.++++.|.+.|+.+.  
T Consensus       256 Ga~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~  335 (396)
T COG1448         256 GALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAP  335 (396)
T ss_pred             ceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            65533  333333322    2222222222222222221   1       1223456677888888888888888621  


Q ss_pred             ----Cc----ceEecCCCCCCcchHHHHhh
Q 022194          273 ----RV----KKVNYAGLPEHPGHELHYSQ  294 (301)
Q Consensus       273 ----~v----~~v~~p~~~~~~~~~~~~~~  294 (301)
                          .+    .-..++|+.......++++.
T Consensus       336 ~~f~~i~~Q~GMFsy~Gls~~QV~rLree~  365 (396)
T COG1448         336 RNFDFIISQRGMFSYTGLSPEQVDRLREEF  365 (396)
T ss_pred             cccchHhhcCceeecCCCCHHHHHHHHHhc
Confidence                11    11446666666666666554

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.43  E-value=5.3e-12  Score=108.80  Aligned_cols=184  Identities=23%  Similarity=0.213  Sum_probs=132.0

Q ss_pred             HHHHHHHHHhhcCCCceEEecchHHHHHHHHhccCCCCeEEEcC-----CCCccHHHHHhhhcccCCcEEEEecCC---C
Q 022194           57 RDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGD-----DLYGGTDRLLSRVTPKTGVVVKRVNTC---D  128 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~~~~~g~~Vlv~~-----~~y~~~~~~~~~~~~~~g~~~~~~~~~---d  128 (301)
                      ...+...++..++++.+.++++.+.|+..+...+.++.+|+++.     +.+...    +.+++..|.+++++...   +
T Consensus        70 ~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~~~EvVis~g~lV~gg~~~v----~d~~~~aG~~l~EvG~tn~t~  145 (395)
T COG1921          70 LTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVEGGAFRV----PDIIRLAGAKLVEVGTTNRTH  145 (395)
T ss_pred             HHHHHHHHhcccchhheeeECCcHHHHHHHHhhhccCCeEEEEccccccCCCCCh----hHHHHHcCCEEEEecccCcCC
Confidence            44666777777888899999998888865444444455555443     244444    37788899999888864   7


Q ss_pred             HHHHHhhcCCCceEEEEeCCCCCcccc--ccHHHHHHHHHHcCCEEEEeCCcCCccc-----cCccCCCCcEEEeccccc
Q 022194          129 LDEVASAIGPWTKLVWVESPTNPRQQI--CDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKF  201 (301)
Q Consensus       129 ~~~l~~~l~~~~~~v~i~~~~np~G~~--~~l~~l~~l~~~~~~~li~D~~~~~~~~-----~~~~~~~~di~~~S~sK~  201 (301)
                      ..+++.++.+++++++-.+.+|- |..  .++++++++||++|+++++|.+.+..+.     ......|+|++++|..|.
T Consensus       146 ~~d~~~AIne~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKl  224 (395)
T COG1921         146 LKDYELAINENTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKL  224 (395)
T ss_pred             HHHHHHHhccCCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchh
Confidence            89999999999988876655553 444  4688899999999999999999875432     234467999999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (301)
                      |+||   ++|++++++ +++.+++...-..+.-......+++..+++.
T Consensus       225 lgGP---qaGii~GkK-elI~~lq~~~l~Ralrv~K~tla~l~~aLe~  268 (395)
T COG1921         225 LGGP---QAGIIVGKK-ELIEKLQSHPLKRALRVDKETLAALEAALEL  268 (395)
T ss_pred             cCCC---ccceEechH-HHHHHHHhhhhhhhhhcCcHhHHHHHHHHHH
Confidence            9887   579999885 5556555555445555555555555444443

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.43  E-value=7.7e-12  Score=105.97  Aligned_cols=223  Identities=17%  Similarity=0.145  Sum_probs=142.8

Q ss_pred             ccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHHHHHhc--cCCCCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           49 YTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALAAVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        49 y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~~~~~~--~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      |+.. |.+. |+.+.+.|.++-|.+   +.|++|+| +.|+..++.+  ..+++-|+++-|-|+-|.    ..+...|..
T Consensus       109 YS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYs----Ati~l~~~~  184 (475)
T KOG0258|consen  109 YSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYS----ATISLLGGT  184 (475)
T ss_pred             cccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhH----HHHHHhCCc
Confidence            5555 7676 888999998887742   56666666 6888766664  346788999999999886    333445555


Q ss_pred             EEEecCC-------CHHHHHhhcC-----CCceEEEEeCCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCccccC
Q 022194          121 VKRVNTC-------DLDEVASAIG-----PWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSR  185 (301)
Q Consensus       121 ~~~~~~~-------d~~~l~~~l~-----~~~~~v~i~~~~np~G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~~~~  185 (301)
                      .+...++       |.++++..++     -+++++++.+|.||||.+.   .+++|.++|+++++.++.||+|-.-++..
T Consensus       185 ~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~  264 (475)
T KOG0258|consen  185 QVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTT  264 (475)
T ss_pred             ccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCC
Confidence            4444443       7788876665     2789999999999999996   59999999999999999999975333221


Q ss_pred             c-------------cCCCC----cEEEecccccccCCCCceeeEEEEc--chhHHHHHHHhhhhcCCC--CCHHhHHH--
Q 022194          186 P-------------LELGA----DIVMHSATKFIAGHSDVMAGVLAVK--GERLAKELYFLQNAEGSG--LAPFDCWI--  242 (301)
Q Consensus       186 ~-------------~~~~~----di~~~S~sK~~~g~~g~~~g~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~--  242 (301)
                      .             .....    -+.+.|.||.+.|-.|.|+|++=.-  +....+.+.......-+.  ......-.  
T Consensus       265 ~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~V  344 (475)
T KOG0258|consen  265 GSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVV  344 (475)
T ss_pred             CcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceec
Confidence            0             11111    3677788999988889999998432  222323222222111110  00000000  


Q ss_pred             ---------HHcccccHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          243 ---------CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       243 ---------~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                               .......-+...+.+..+++.+.+.+++.++|.
T Consensus       345 nPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~  386 (475)
T KOG0258|consen  345 NPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGIS  386 (475)
T ss_pred             CCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCcee
Confidence                     000111123344667778888888888877653

>PRK06148 hypothetical protein; Provisional

Probab=99.43  E-value=5.6e-12  Score=124.33  Aligned_cols=263  Identities=18%  Similarity=0.118  Sum_probs=158.6

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC--CceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~~~~~   88 (301)
                      .++|||.++..-+|..++.+..+.. .+.+.  ..  ....+..+...++.+.|.+.+..  +.+.+++||++|+.+.++
T Consensus       624 ~~ylD~~~g~~~lGH~hp~v~~Ai~-~q~~~--l~--~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~Alk  698 (1013)
T PRK06148        624 RAYLDCFNNVCHVGHAHPRVVAAAA-RQAAR--LN--TNTRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALR  698 (1013)
T ss_pred             CEEEEcccChhhcCCCCHHHHHHHH-HHHhh--cC--CcCCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHH
Confidence            4788987554458877665554432 22221  11  11233556688899999988743  567889999999865444


Q ss_pred             cc---CCCCeEEEcCCCCccHHHHHhhhc-----cc------CCcEEEEe------cCC--C-------HHHHHhhcC--
Q 022194           89 LL---GTGEEIVAGDDLYGGTDRLLSRVT-----PK------TGVVVKRV------NTC--D-------LDEVASAIG--  137 (301)
Q Consensus        89 ~~---~~g~~Vlv~~~~y~~~~~~~~~~~-----~~------~g~~~~~~------~~~--d-------~~~l~~~l~--  137 (301)
                      +.   ..+.+|+.....||+.......+.     ..      .++.....      +..  +       .+.+++.+.  
T Consensus       699 lAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  778 (1013)
T PRK06148        699 LARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAM  778 (1013)
T ss_pred             HHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhh
Confidence            42   345679998999998753211110     00      01111111      111  1       133444432  


Q ss_pred             ----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-Ccccc----CccCCCCcEEEecccccccC
Q 022194          138 ----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS----RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       138 ----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~-~~~~~----~~~~~~~di~~~S~sK~~~g  204 (301)
                          +++.+|+++......|.+.+    +++|.++|+++|+++|+||++. .|-.+    .....|....+.+++|.++|
T Consensus       779 ~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lgg  858 (1013)
T PRK06148        779 AAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGN  858 (1013)
T ss_pred             hccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccC
Confidence                46889999988777777765    9999999999999999999985 33222    22234555555668999965


Q ss_pred             CCCceeeEEEEcchhHHHHHHHh-hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh----CCCcceE
Q 022194          205 HSDVMAGVLAVKGERLAKELYFL-QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKV  277 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~----~~~v~~v  277 (301)
                        |+..|.+++++ .+.+.+... ....+.+-++.++++++..++.+.  +..++..+..++|++.|++    ++.+..|
T Consensus       859 --G~Plgav~~~~-ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~V  935 (1013)
T PRK06148        859 --GHPMGAVVTTR-EIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDV  935 (1013)
T ss_pred             --CcceEEEEEcH-HHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence              45678888874 454533221 123445567888888888777663  2345556666666666654    4544444


Q ss_pred             ecCC
Q 022194          278 NYAG  281 (301)
Q Consensus       278 ~~p~  281 (301)
                      +..|
T Consensus       936 rG~G  939 (1013)
T PRK06148        936 RGMG  939 (1013)
T ss_pred             eeec
Confidence            4433

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.42  E-value=2e-11  Score=101.42  Aligned_cols=222  Identities=18%  Similarity=0.242  Sum_probs=143.2

Q ss_pred             HHHHHHHHHhhcCCCceEEecchHHHHHHHHhccC---------C-CC-eEEEcCCCCccHH----------HHHhhhcc
Q 022194           57 RDALESLLAKLDKADRALCFTSGMAALAAVTHLLG---------T-GE-EIVAGDDLYGGTD----------RLLSRVTP  115 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~~~~---------~-g~-~Vlv~~~~y~~~~----------~~~~~~~~  115 (301)
                      .-++++.+.++|+.+.++-.++|.+|...+..+.+         | .. +|+.....|++-.          ..|.....
T Consensus       103 ~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp  182 (427)
T KOG1402|consen  103 LGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGP  182 (427)
T ss_pred             HHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCC
Confidence            44566777788888888889999988864444332         2 22 3444444444421          11112111


Q ss_pred             cCCcEEEEecCCCHHHHHhhcC-CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccc-cC----
Q 022194          116 KTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVL-SR----  185 (301)
Q Consensus       116 ~~g~~~~~~~~~d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~-~~----  185 (301)
                      -.--.+..++..|.++++.+++ ++.++++++..+...|.+.|    +++..++|++||+++|.||++..-.. +.    
T Consensus       183 ~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~  262 (427)
T KOG1402|consen  183 FLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLAC  262 (427)
T ss_pred             CCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEe
Confidence            1111266677779999999998 57889999999999999865    99999999999999999999864322 21    


Q ss_pred             -ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHH
Q 022194          186 -PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQ  262 (301)
Q Consensus       186 -~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~  262 (301)
                       ......|+++  +.|+++|. -+..+.+++. ++++..++...+.++.+-++..++.++.+++.+.+  ..++....-.
T Consensus       263 d~env~PDivi--lgKalSGG-~~Pvsavl~~-~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~  338 (427)
T KOG1402|consen  263 DYENVRPDIVI--LGKALSGG-VYPVSAVLAD-DDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGE  338 (427)
T ss_pred             ehhhcCCCeEE--EeccccCC-eeeeEEEEec-HHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1222457777  89999763 2334555554 45555566667777777788888888888887643  2333334444


Q ss_pred             HHHHHHHhCC----C-cceEecCCC
Q 022194          263 KIAEFLASHP----R-VKKVNYAGL  282 (301)
Q Consensus       263 ~l~~~l~~~~----~-v~~v~~p~~  282 (301)
                      .++..|.+++    + ++.|+..|+
T Consensus       339 ~l~~~L~~l~~~~p~~v~~VRGrGl  363 (427)
T KOG1402|consen  339 ILRDQLNKLQKKFPHVVKEVRGRGL  363 (427)
T ss_pred             HHHHHHHhccccccchhheeeccce
Confidence            5555555542    2 355666665

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.41  E-value=3.9e-12  Score=107.87  Aligned_cols=227  Identities=18%  Similarity=0.131  Sum_probs=139.3

Q ss_pred             CCchHHHHHHHHHhhcCC--CceEEecchHHHHHHHHhc---cCCCCeEEEcCCCCccHHHHHhhhcc--cCCc------
Q 022194           53 GNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP--KTGV------  119 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~~~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~--~~g~------  119 (301)
                      -++...++.+.|.+.+-.  ..+.+++||++|..+.+.+   ....-.++....+||+.......+-.  ....      
T Consensus        90 ~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~  169 (442)
T KOG1404|consen   90 LNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVA  169 (442)
T ss_pred             cCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCC
Confidence            456677788888777633  3577889999998543332   23334677778888887532211100  0000      


Q ss_pred             --EEEEecCC--------C---------HHHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEE
Q 022194          120 --VVKRVNTC--------D---------LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALL  172 (301)
Q Consensus       120 --~~~~~~~~--------d---------~~~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~l  172 (301)
                        ....++++        +         .+++++.+.    .++.+.+.+....-.|.+.+    +++..++|+++|.++
T Consensus       170 ~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~  249 (442)
T KOG1404|consen  170 SGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLF  249 (442)
T ss_pred             CcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEE
Confidence              01111111        1         133443432    46777888888887777753    999999999999999


Q ss_pred             EEeCCcCC----ccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh-hhcCCCCCHHhHHHHHccc
Q 022194          173 LVDNSIMS----PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEGSGLAPFDCWICLRGV  247 (301)
Q Consensus       173 i~D~~~~~----~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l  247 (301)
                      |.||+++.    |.+......++...+.++.|.+++.  +..|.++..+ ++.+.+.... ...+.+-+|.+++..+..+
T Consensus       250 IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG--~Pl~AVvtt~-EIa~v~~~~~~~fnTyggnP~a~avg~aVL  326 (442)
T KOG1404|consen  250 IADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNG--FPLGAVVTTP-EIADVLNQKSSHFNTYGGNPVACAVGLAVL  326 (442)
T ss_pred             EehhhhhccccccccccccccCCCccHHHHHhhccCC--CcceeeecCH-HHHHHHHhccccccccCCCchhHHHHHHHH
Confidence            99999863    4555566677888888999999653  5678887775 4545444433 4444556777777777777


Q ss_pred             ccHHH--HHHHHHHHHHHHHHHHHh----CCCcceEecCCC
Q 022194          248 KTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGL  282 (301)
Q Consensus       248 ~~~~~--~~~~~~~~~~~l~~~l~~----~~~v~~v~~p~~  282 (301)
                      +.+++  ..++..+...+|.+.|.+    +|.|..|+..||
T Consensus       327 ~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GL  367 (442)
T KOG1404|consen  327 KVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGL  367 (442)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceeeccccee
Confidence            66542  223333334455555543    566666666555

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.40  E-value=1.3e-11  Score=108.48  Aligned_cols=216  Identities=15%  Similarity=0.062  Sum_probs=141.8

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHH-HHHHhccC-CCCeEEEcCC----CCccHHHHHhhhcccCCcEEEEec-
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLG-TGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVN-  125 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai-~~~~~~~~-~g~~Vlv~~~----~y~~~~~~~~~~~~~~g~~~~~~~-  125 (301)
                      ++|+..+|++..++++|.+.++.+.+|+.+- .++..+++ ||+++++..+    .|..+.......+...|+.++.+. 
T Consensus        72 gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~  151 (467)
T TIGR02617        72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYT  151 (467)
T ss_pred             cCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccc
Confidence            6788999999999999999999999998664 45566777 6777775443    222211111134455666655542 


Q ss_pred             -----------C---CCHHHHHhhcCC----CceEEEEeCCCCCccc-cc---cHHHHHHHHHHcCCEEEEeCCcCC---
Q 022194          126 -----------T---CDLDEVASAIGP----WTKLVWVESPTNPRQQ-IC---DIRKIAEMAHAHGALLLVDNSIMS---  180 (301)
Q Consensus       126 -----------~---~d~~~l~~~l~~----~~~~v~i~~~~np~G~-~~---~l~~l~~l~~~~~~~li~D~~~~~---  180 (301)
                                 .   -|++++++.+++    ++..+.++-.+|..|. ..   .++++.++|++||+.++.|.+...   
T Consensus       152 ~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA  231 (467)
T TIGR02617       152 KEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENA  231 (467)
T ss_pred             hhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHh
Confidence                       1   188999999973    4555555544565444 44   488899999999999999998532   


Q ss_pred             --------ccccCcc-------CCCCcEEEecccccccCCCCceeeEEEEcch---hHHHHHHHhhhh-----cCCCCCH
Q 022194          181 --------PVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGE---RLAKELYFLQNA-----EGSGLAP  237 (301)
Q Consensus       181 --------~~~~~~~-------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~---~~~~~~~~~~~~-----~~~~~~~  237 (301)
                              +....+.       ...+|.+..|++|.++.|   ++|+++++++   .+.++.+...-.     +-.+++.
T Consensus       232 ~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgAp---vGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlag  308 (467)
T TIGR02617       232 YFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEG  308 (467)
T ss_pred             hhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCc---ccceEEecchhHHHHHHHHHhhcccccCCcCcCchhH
Confidence                    1111111       145899999999999776   5799999988   555544432221     1135666


Q ss_pred             HhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHhC
Q 022194          238 FDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       238 ~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ....++..++++.  .++.+......++|.+.|.+.
T Consensus       309 rd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~  344 (467)
T TIGR02617       309 GAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEI  344 (467)
T ss_pred             HHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhC
Confidence            6666665566542  445566667777888888764

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.39  E-value=1.4e-11  Score=108.51  Aligned_cols=227  Identities=16%  Similarity=0.150  Sum_probs=142.2

Q ss_pred             CCchHHHHHHHHHhhcC---CCceEEecchHHHHHHHHhcc--------CC-CCeEEEcCCCCccHHHHHhhhcc-----
Q 022194           53 GNPTRDALESLLAKLDK---ADRALCFTSGMAALAAVTHLL--------GT-GEEIVAGDDLYGGTDRLLSRVTP-----  115 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~~~~~~~--------~~-g~~Vlv~~~~y~~~~~~~~~~~~-----  115 (301)
                      +.| -.+|.+.|+++..   .+.+++.+||++|+.+.+.+.        +| ..+++.-...||+..-..-.+..     
T Consensus        86 ~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~  164 (449)
T COG0161          86 HEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALR  164 (449)
T ss_pred             Cch-HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhh
Confidence            335 7888899998876   568888999999986444431        23 33477777888886321101111     


Q ss_pred             -----cCCcEEEEecC-----------------CCHHHHHhhcC----CCceEEEEeCCCCC-cccccc----HHHHHHH
Q 022194          116 -----KTGVVVKRVNT-----------------CDLDEVASAIG----PWTKLVWVESPTNP-RQQICD----IRKIAEM  164 (301)
Q Consensus       116 -----~~g~~~~~~~~-----------------~d~~~l~~~l~----~~~~~v~i~~~~np-~G~~~~----l~~l~~l  164 (301)
                           ..-..+..++.                 ...+++++.+.    +++.+++++..... .|...|    ++++.++
T Consensus       165 ~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~i  244 (449)
T COG0161         165 HAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREI  244 (449)
T ss_pred             hhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHH
Confidence                 00011111111                 11455666654    57888899988776 666653    9999999


Q ss_pred             HHHcCCEEEEeCCcCC----ccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHH-----hhhhcCCCC
Q 022194          165 AHAHGALLLVDNSIMS----PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-----LQNAEGSGL  235 (301)
Q Consensus       165 ~~~~~~~li~D~~~~~----~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~  235 (301)
                      |++||+++|.||+-..    |.+..-...|+...+.+++|.+++. -+..|.++++++ +.+.+..     +.+.++.+-
T Consensus       245 C~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~G-Y~Pl~a~l~~~~-I~~~~~~~~~~~f~HG~TYsg  322 (449)
T COG0161         245 CDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGG-YLPLSAVLTSDR-IYEAFSDGDAGAFMHGHTYSG  322 (449)
T ss_pred             HHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeeccccccc-chhhHhHhhhHH-HHHHHhcccCCeeccCCcccc
Confidence            9999999999999642    3333334445555556699999664 344566666644 4443322     234455667


Q ss_pred             CHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh----CCCcceEecCCC
Q 022194          236 APFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGL  282 (301)
Q Consensus       236 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~----~~~v~~v~~p~~  282 (301)
                      +|.+++++++.++.+.  ..+++..+...++.+.|++    +|.|..|+.-|+
T Consensus       323 hPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gl  375 (449)
T COG0161         323 NPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGL  375 (449)
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccce
Confidence            8999999999888763  3445555666666666664    457767776665

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.39  E-value=4.8e-11  Score=110.55  Aligned_cols=171  Identities=17%  Similarity=0.152  Sum_probs=116.8

Q ss_pred             eEEEcCCCCccHHHHHhhhcccCCc---EEEEecCC-----CHHHHHhhcC----C--CceEEEEeCCCCCccccccHHH
Q 022194           95 EIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIG----P--WTKLVWVESPTNPRQQICDIRK  160 (301)
Q Consensus        95 ~Vlv~~~~y~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~l~----~--~~~~v~i~~~~np~G~~~~l~~  160 (301)
                      +|+++.-.|+++.    +.+...|+   .++.++.+     |++.|++.+.    +  .+-+|+.+..++.+|.+.|+++
T Consensus       224 ~vl~s~~aHyS~~----KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~e  299 (608)
T TIGR03811       224 KWLVPQTKHYSWL----KAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDK  299 (608)
T ss_pred             EEEECCCccHHHH----HHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHH
Confidence            4777777788876    55555666   46666654     7888887775    2  2456677788889999999999


Q ss_pred             HHHHH---HHcCC--EEEEeCCcCCcc---ccC------c------------------------------cCCCCcEEEe
Q 022194          161 IAEMA---HAHGA--LLLVDNSIMSPV---LSR------P------------------------------LELGADIVMH  196 (301)
Q Consensus       161 l~~l~---~~~~~--~li~D~~~~~~~---~~~------~------------------------------~~~~~di~~~  196 (301)
                      |+++|   +++|+  |+++|.+|+...   +..      +                              .-..+|-++.
T Consensus       300 I~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItv  379 (608)
T TIGR03811       300 IVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTI  379 (608)
T ss_pred             HHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEe
Confidence            99998   67887  699999998643   111      0                              0125799999


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHHhhh-----h------------cCC--CCCHHhHHHHHccc----ccHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-----A------------EGS--GLAPFDCWICLRGV----KTMALR  253 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~-----~------------~~~--~~~~~~~~~~~~~l----~~~~~~  253 (301)
                      ++||++..|-+  +|+++.++..+.+.+.....     .            .+.  +......|+.++.+    +-+.+.
T Consensus       380 DpHK~g~~Py~--~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~  457 (608)
T TIGR03811       380 DPHKMGYIPYS--AGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKL  457 (608)
T ss_pred             CcccccccCCC--eEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999877754  68888887765443321000     0            001  11134455555544    347888


Q ss_pred             HHHHHHHHHHHHHHHHhC
Q 022194          254 VEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~  271 (301)
                      +++..+.++++.+.|+..
T Consensus       458 i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       458 IGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            899999999999999873

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.38  E-value=2.7e-11  Score=116.13  Aligned_cols=190  Identities=23%  Similarity=0.325  Sum_probs=139.8

Q ss_pred             ecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCC-------chHHHHHHHHHhhcCCC--ceEEecchHHHHH-
Q 022194           15 NFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-------PTRDALESLLAKLDKAD--RALCFTSGMAALA-   84 (301)
Q Consensus        15 ~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~-------~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-   84 (301)
                      +|- +..|++...+|++.+.....++    +...|.||..       ...-+++..++++.|.+  ++-+...+|++.. 
T Consensus        67 ~fi-g~G~y~~~~p~~i~r~v~~~p~----~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa  141 (939)
T TIGR00461        67 SYI-GMGYYGTILPPVIQRNLLENPG----WYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEA  141 (939)
T ss_pred             ccC-CCCcCCCcCChHHHHHHHhCch----hhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHH
Confidence            443 4567777778888877655555    2334555521       22556778899999998  5577777775443 


Q ss_pred             HHHh--cc-CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHH
Q 022194           85 AVTH--LL-GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (301)
Q Consensus        85 ~~~~--~~-~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l  161 (301)
                      ++++  .- +++++|++++..|+.+...++..++..|++++.++   .+++++.+  ++.++++++|++ .|.+.++++|
T Consensus       142 ~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~---~~~l~~~~--~~~~v~~q~Pn~-~G~ied~~~i  215 (939)
T TIGR00461       142 MALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD---CSDIKKAV--DVFGCLLQYPAT-DGSILDYKQL  215 (939)
T ss_pred             HHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc---HHHHhhcC--CEEEEEEECCCC-CeEEecHHHH
Confidence            2222  22 23479999999999999888888899999999886   45666665  578888999987 8999999999


Q ss_pred             HHHHHHcCCEEEEeCCcC-CccccCccCCCCcEEEeccccc-----ccCCCCceeeEEEEcch
Q 022194          162 AEMAHAHGALLLVDNSIM-SPVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       162 ~~l~~~~~~~li~D~~~~-~~~~~~~~~~~~di~~~S~sK~-----~~g~~g~~~g~~~~~~~  218 (301)
                      ++++|++|.+++++.-.. ......|.++|+||++++..++     ||||   -+|++.++++
T Consensus       216 ~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP---~aG~~a~~~~  275 (939)
T TIGR00461       216 IDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGP---HAAFFAVKDE  275 (939)
T ss_pred             HHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCC---ceeeeeecHh
Confidence            999999999999966543 4556688899999998876664     4344   3788888754

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.38  E-value=8.3e-12  Score=112.80  Aligned_cols=251  Identities=14%  Similarity=0.122  Sum_probs=141.1

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~~~~~i~~~sG~~ai~~~~   87 (301)
                      ..+|||.++  +.-+|..++.+..+.. .+.+  ...  .++ ...+...++.+.|.+++ +.+.+.+++||++|+.+.+
T Consensus        48 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~q~~--~~~--~~~-~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~Al  121 (431)
T PRK06209         48 NEYIEYGMGLRAVGLGHAYPPVVEAVR-EALQ--DGC--NFT-RPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAV  121 (431)
T ss_pred             CEEEEccccccchhcCCCCHHHHHHHH-HHHH--hCc--CCC-CCCHHHHHHHHHHHHhCCccceEEEecCHHHHHHHHH
Confidence            368888533  2348887766655432 2211  111  111 11122457788888876 3467888999999986444


Q ss_pred             hcc---CCCCeEEEc-CCCCccHHHHHhhh-cccCC------cEEEEecCCCHHHHHhhcC---CCceEEEEeCCCCCcc
Q 022194           88 HLL---GTGEEIVAG-DDLYGGTDRLLSRV-TPKTG------VVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQ  153 (301)
Q Consensus        88 ~~~---~~g~~Vlv~-~~~y~~~~~~~~~~-~~~~g------~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~~~np~G  153 (301)
                      ++.   ....+|+.. ...||+........ ....+      ..+..++..|++++++.+.   +++.+|+++......+
T Consensus       122 klAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~  201 (431)
T PRK06209        122 RLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATADEP  201 (431)
T ss_pred             HHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCCCCHHHHHHHHHhCCCCEEEEEEccccCCCC
Confidence            432   223456554 34444321110000 00011      1123444558888988875   4577888876554323


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCCcCCccccC--cc-CCCCcEEEecccccccCCCCceeeEEEEcchhHHHH--HHHh-
Q 022194          154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSR--PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE--LYFL-  227 (301)
Q Consensus       154 ~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~--~~-~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~--~~~~-  227 (301)
                      ....+++|.++|++||+++|+||++.......  .. ..+....+.+++|.+++  |+.+|++++++ .+.+.  +... 
T Consensus       202 ~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PDi~t~gK~lgg--G~p~~av~~~~-~i~~~~~~~~~~  278 (431)
T PRK06209        202 QDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPDLSCFGKALGN--GFAVSALAGKR-EYMELGGLEHTD  278 (431)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcceeeehhhhcC--CcccEEEEEHH-HHHhhhcccccC
Confidence            33349999999999999999999984221111  11 13444455779999965  35578888774 44443  1111 


Q ss_pred             -h----hhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          228 -Q----NAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       228 -~----~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                       .    ...+.+.++..++++++.++.+.  ...++..++.+++++.|++
T Consensus       279 ~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  328 (431)
T PRK06209        279 RERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNE  328 (431)
T ss_pred             CCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence             1    12223345577777777766653  2356666666777776654

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.38  E-value=2.9e-11  Score=106.69  Aligned_cols=208  Identities=22%  Similarity=0.235  Sum_probs=130.8

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchH---HHHHHHHhccCC-CCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHH
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGM---AALAAVTHLLGT-GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD  130 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~---~ai~~~~~~~~~-g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~  130 (301)
                      ..+++..++++.|.+  ++-+..+++   +|+.++.+..+. +++|+++...|+.+...++..+...|++++.++.++..
T Consensus       112 lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~  191 (429)
T PF02347_consen  112 LFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDG  191 (429)
T ss_dssp             HHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTC
T ss_pred             HHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccC
Confidence            567889999999998  344555554   444333444333 46999999999999988888899999999999865321


Q ss_pred             HHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCc--CCccccCccCCCCcEEEecccccccCCC--
Q 022194          131 EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI--MSPVLSRPLELGADIVMHSATKFIAGHS--  206 (301)
Q Consensus       131 ~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~--~~~~~~~~~~~~~di~~~S~sK~~~g~~--  206 (301)
                      ...   ++++.+|++++|++ .|.+.++++|++++|++|+++++ .+-  +.+.+..|.++|+||++++ +|.|+-|.  
T Consensus       192 ~~d---~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~  265 (429)
T PF02347_consen  192 TTD---DDDTAAVMVQNPNT-FGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGF  265 (429)
T ss_dssp             SB----STTEEEEEEESS-T-TSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CC
T ss_pred             Ccc---ccCeEEEEeecCCC-CceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCC
Confidence            111   68899999999998 89999999999999999999988 553  4566778999999999887 77654331  


Q ss_pred             -CceeeEEEEcchhHHHHHH-------------------------Hhhh--hcCCCC-CHHh------HHHHHcccccHH
Q 022194          207 -DVMAGVLAVKGERLAKELY-------------------------FLQN--AEGSGL-APFD------CWICLRGVKTMA  251 (301)
Q Consensus       207 -g~~~g~~~~~~~~~~~~~~-------------------------~~~~--~~~~~~-~~~~------~~~~~~~l~~~~  251 (301)
                       |.-.|++.++++.. +.+-                         .++.  ...+.. +...      .++...+-+-+.
T Consensus       266 GGP~~G~~a~~~~l~-r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~  344 (429)
T PF02347_consen  266 GGPGAGFFAVREDLV-RQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLR  344 (429)
T ss_dssp             C-S--EEEEE-GGGG-GGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeeEEEhhhhh-hhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHH
Confidence             22368888886532 2110                         0111  011111 1111      222233344466


Q ss_pred             HHHHHHHHHHHHHHHHHHhC
Q 022194          252 LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       252 ~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.-++...++.++.+.|++.
T Consensus       345 ~iA~~~~~~A~yl~~~L~~~  364 (429)
T PF02347_consen  345 EIAERIHLNAHYLAERLKKI  364 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            77788999999999999886

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.37  E-value=2e-11  Score=104.24  Aligned_cols=211  Identities=16%  Similarity=0.174  Sum_probs=137.8

Q ss_pred             HHHHHHHHHhhc---CCCceEEecchHHHHHHHHhccC-------CC--CeEEEcCCCCccHHHHHhhh--cccCCc---
Q 022194           57 RDALESLLAKLD---KADRALCFTSGMAALAAVTHLLG-------TG--EEIVAGDDLYGGTDRLLSRV--TPKTGV---  119 (301)
Q Consensus        57 ~~~l~~~l~~~~---~~~~~i~~~sG~~ai~~~~~~~~-------~g--~~Vlv~~~~y~~~~~~~~~~--~~~~g~---  119 (301)
                      .-++++.+.+..   +++.+.+.+|||+|+.+++.+.+       +-  .+++....+||+-...+-..  ...++.   
T Consensus       100 av~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~  179 (433)
T KOG1401|consen  100 AVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFD  179 (433)
T ss_pred             HHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCC
Confidence            445556666666   56688899999999864443321       11  24898899999875432221  122222   


Q ss_pred             ----EEEEecCCCHHHHHhhcC---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCcc-cc---
Q 022194          120 ----VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPV-LS---  184 (301)
Q Consensus       120 ----~~~~~~~~d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~-~~---  184 (301)
                          ++......|..++++.++   .++.+|+++......|.++.    +..|.++|+++|+++|.||++.... ..   
T Consensus       180 p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~  259 (433)
T KOG1401|consen  180 PIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGW  259 (433)
T ss_pred             CCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHH
Confidence                344444558888988887   35799999988877777642    7889999999999999999987422 21   


Q ss_pred             CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh---hcCCCCCHHhHHHHHcccccH--HHHHHHHHH
Q 022194          185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---AEGSGLAPFDCWICLRGVKTM--ALRVEKQQD  259 (301)
Q Consensus       185 ~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~  259 (301)
                      .....++...+.++.|.++|  |+..|+..++++ +...+..-.+   ..+..-++.++.+....++++  .+..++..+
T Consensus       260 a~e~~~~~PDI~t~aK~L~g--GlPigA~~v~~k-V~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~  336 (433)
T KOG1401|consen  260 AQEYFGVTPDITTVAKPLGG--GLPIGATGVRDK-VAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSK  336 (433)
T ss_pred             HHHHhCcCCcceeehhhccC--CceeEEEeehHH-HHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHH
Confidence            12223566666779999965  478899888854 4454433333   444556777777777777765  344555555


Q ss_pred             HHHHHHHHHHh
Q 022194          260 NAQKIAEFLAS  270 (301)
Q Consensus       260 ~~~~l~~~l~~  270 (301)
                      ..+.|++.|.+
T Consensus       337 ~~k~L~~~l~e  347 (433)
T KOG1401|consen  337 IGKELRKLLDE  347 (433)
T ss_pred             HHHHHHHHHHH
Confidence            55555555543

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.32  E-value=4.1e-11  Score=108.50  Aligned_cols=250  Identities=12%  Similarity=0.069  Sum_probs=141.2

Q ss_pred             ceeeecCCC--CCCCCccccCeee--cceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc---CCCceEEecchHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQ--TATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD---KADRALCFTSGMAAL   83 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~--~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~---~~~~~i~~~sG~~ai   83 (301)
                      .+++||.++  +.-+|..++.+..  +.. .+.............+..+...++.+.|.++.   +.+.+.+++||++|+
T Consensus        45 ~~ylD~~~g~~~~~lGh~~p~v~~~~ai~-~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAv  123 (443)
T PRK08297         45 RRYLDMFTFFASSALGMNHPALADDPEFR-AELGRAALNKPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAV  123 (443)
T ss_pred             CEeeecccCHhhhcCCCCChHHhhHHHHH-HHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHH
Confidence            468888544  4458888777665  322 11110000000111123455777888888876   235788899999998


Q ss_pred             HHHHhccC---------C------CCeEEEcCCCCccHHHHHhhhccc-------CC------cEEEEe--cC-------
Q 022194           84 AAVTHLLG---------T------GEEIVAGDDLYGGTDRLLSRVTPK-------TG------VVVKRV--NT-------  126 (301)
Q Consensus        84 ~~~~~~~~---------~------g~~Vlv~~~~y~~~~~~~~~~~~~-------~g------~~~~~~--~~-------  126 (301)
                      .+.+.+.+         .      +.+|+....+||+...........       ..      +....+  +.       
T Consensus       124 e~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (443)
T PRK08297        124 ENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEE  203 (443)
T ss_pred             HHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccch
Confidence            64444331         1      367999999999985332111100       00      000000  00       


Q ss_pred             ------CCHHHHHhhcC---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-ccccCc---cCC
Q 022194          127 ------CDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP---LEL  189 (301)
Q Consensus       127 ------~d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~~~---~~~  189 (301)
                            .+++++++.+.   +++.+|+++......|.+.+    +++|.++|++||+++|+||++.. |..+..   ...
T Consensus       204 ~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~  283 (443)
T PRK08297        204 VEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQL  283 (443)
T ss_pred             hhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhc
Confidence                  02344555553   67899999988777777642    99999999999999999999853 232211   122


Q ss_pred             C--CcEEEecccccccCCCCceeeEEEEcchhHHHHHH-H----hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHH
Q 022194          190 G--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-F----LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDN  260 (301)
Q Consensus       190 ~--~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~  260 (301)
                      +  .|++  +++|.+.     .+|++..+ + +..... .    .....+.+.++..+++++..++.+.  +..++..+.
T Consensus       284 gv~PDiv--~~gK~l~-----~~a~l~~~-~-i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~  354 (443)
T PRK08297        284 GVRPDIV--AFGKKTQ-----VCGIMAGR-R-VDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQ  354 (443)
T ss_pred             CCCCCEE--Eeccccc-----ccceecch-H-HHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3  4555  4899872     24555443 2 211110 1    1123344567777777777776553  344556666


Q ss_pred             HHHHHHHHHh
Q 022194          261 AQKIAEFLAS  270 (301)
Q Consensus       261 ~~~l~~~l~~  270 (301)
                      .+++.+.|++
T Consensus       355 g~~l~~~L~~  364 (443)
T PRK08297        355 GEYLLARLEE  364 (443)
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.31  E-value=4.7e-11  Score=114.22  Aligned_cols=267  Identities=13%  Similarity=0.102  Sum_probs=150.3

Q ss_pred             eeeecCCCCCC--CCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEecchHHHHHHH
Q 022194           12 LLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAAV   86 (301)
Q Consensus        12 ~~~~~~~~~~~--~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~~~   86 (301)
                      .++|+.++-..  +|..++|.+..+...+..  +...+....+.++...+|.+.|.+..+   .+.+++.++|++|+.+.
T Consensus       366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~--rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~A  443 (817)
T PLN02974        366 QQFDACASWWTQGPDPTLQPELARAVAYAAG--RYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVA  443 (817)
T ss_pred             eEEEcchhHHHhCCCcCCCHHHHHHHHHHHh--hCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHH
Confidence            67777644333  443346666655433222  112222212245667888888888664   34688889999888533


Q ss_pred             Hhcc--------C--------------CCCeEEEcCCCCccHHHHHhhhcc----------c----CCcEEE--------
Q 022194           87 THLL--------G--------------TGEEIVAGDDLYGGTDRLLSRVTP----------K----TGVVVK--------  122 (301)
Q Consensus        87 ~~~~--------~--------------~g~~Vlv~~~~y~~~~~~~~~~~~----------~----~g~~~~--------  122 (301)
                      +.+.        .              ...+|+....+||+.......+..          .    .+..+.        
T Consensus       444 lKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~  523 (817)
T PLN02974        444 LKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRN  523 (817)
T ss_pred             HHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCcccccc
Confidence            2221        1              134689889999986432211111          0    000000        


Q ss_pred             -----EecCC-------------------------------CHHHHHhhcC--------CCceEEEEeCC-CCCcccccc
Q 022194          123 -----RVNTC-------------------------------DLDEVASAIG--------PWTKLVWVESP-TNPRQQICD  157 (301)
Q Consensus       123 -----~~~~~-------------------------------d~~~l~~~l~--------~~~~~v~i~~~-~np~G~~~~  157 (301)
                           .++..                               ..+.+++.+.        +++.+|+++.. ....|.+.+
T Consensus       524 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~  603 (817)
T PLN02974        524 GRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLI  603 (817)
T ss_pred             ccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccC
Confidence                 00000                               0134555543        46889999985 566677753


Q ss_pred             ----HHHHHHHHHHcCCEEEEeCCcCCc----cccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHH---
Q 022194          158 ----IRKIAEMAHAHGALLLVDNSIMSP----VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---  226 (301)
Q Consensus       158 ----l~~l~~l~~~~~~~li~D~~~~~~----~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~---  226 (301)
                          +++|.++|++||+++|.||++...    .+......|+...+.+++|.++|+ -+..|.++++++ +.+.+..   
T Consensus       604 ~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG-~~Plaa~l~~~~-I~~~f~~~~~  681 (817)
T PLN02974        604 DPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYAKLLTGG-LVPLAATLATEE-VFEAFRGPSK  681 (817)
T ss_pred             CHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeecccccCC-CCccEEEEEcHH-HHHhhccccc
Confidence                899999999999999999998632    222233345555555599999653 134677777644 4443321   


Q ss_pred             ---hhhhcCCCCCHHhHHHHHcccccHHHH--HHHHHHHH----H----HHHHHHHhCCCcceEecCCC
Q 022194          227 ---LQNAEGSGLAPFDCWICLRGVKTMALR--VEKQQDNA----Q----KIAEFLASHPRVKKVNYAGL  282 (301)
Q Consensus       227 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~----~----~l~~~l~~~~~v~~v~~p~~  282 (301)
                         ..+.++.+.++..++++++.++.+.+.  .+.+.++.    .    .+.+.++++|.|..|+.-|+
T Consensus       682 ~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl  750 (817)
T PLN02974        682 LDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGT  750 (817)
T ss_pred             cCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeee
Confidence               123445667888888888877765431  12222222    2    23234456777777766554

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.31  E-value=5.8e-11  Score=107.34  Aligned_cols=252  Identities=13%  Similarity=0.070  Sum_probs=137.9

Q ss_pred             ceeeecCCC--CCCCCccccCee--ecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc---CCCceEEecchHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLY--QTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD---KADRALCFTSGMAAL   83 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~--~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~---~~~~~i~~~sG~~ai   83 (301)
                      ..+|||.++  +.-+|..++.+.  .+.. .+................+...++.+.|++..   +.+.+.+.+||++|+
T Consensus        38 ~~ylD~~~g~~~~~lGh~~p~v~~~~ai~-~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAv  116 (431)
T TIGR03251        38 RRYLDMFSFFASMALGMNHPALVDDLAFR-ARLGAAAVNKPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAV  116 (431)
T ss_pred             CChhhcccChhhcCCCCCChhhhHHHHHH-HHHHHhhhcccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHH
Confidence            357777433  445888777776  3321 11110000001111123455677777777764   345788899999998


Q ss_pred             HHHHhccC---------------CCCeEEEcCCCCccHHHHHhhhcccC------C-------cEEE--EecC-------
Q 022194           84 AAVTHLLG---------------TGEEIVAGDDLYGGTDRLLSRVTPKT------G-------VVVK--RVNT-------  126 (301)
Q Consensus        84 ~~~~~~~~---------------~g~~Vlv~~~~y~~~~~~~~~~~~~~------g-------~~~~--~~~~-------  126 (301)
                      .+.+.+.+               .+.+|+....+||+.....-......      .       +...  ..+.       
T Consensus       117 e~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  196 (431)
T TIGR03251       117 ENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQ  196 (431)
T ss_pred             HHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccccch
Confidence            64444321               13679999999998853321111100      0       0000  0000       


Q ss_pred             ------CCHHHHHhhc---CCCceEEEEeCCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CccccC---ccCC
Q 022194          127 ------CDLDEVASAI---GPWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR---PLEL  189 (301)
Q Consensus       127 ------~d~~~l~~~l---~~~~~~v~i~~~~np~G~~~----~l~~l~~l~~~~~~~li~D~~~~-~~~~~~---~~~~  189 (301)
                            .+++++++.+   .+++.+|+++......|.+.    .+++|.++|++||+++|+||+++ .+..+.   ....
T Consensus       197 ~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~  276 (431)
T TIGR03251       197 VIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQL  276 (431)
T ss_pred             hhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhc
Confidence                  1234445555   36789999998888778775    39999999999999999999987 332221   1122


Q ss_pred             C--CcEEEecccccccCCCCceeeEEEEcch-hHHHHHHH--hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHH
Q 022194          190 G--ADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKELYF--LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQ  262 (301)
Q Consensus       190 ~--~di~~~S~sK~~~g~~g~~~g~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~  262 (301)
                      +  .|+++  ++|.+  |   .+|++....- .+......  .....+.+.++..++++...++.+.  ...++..+..+
T Consensus       277 gv~PDi~~--~gK~~--~---~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~  349 (431)
T TIGR03251       277 GVQPDIVA--FGKKT--Q---VCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGA  349 (431)
T ss_pred             CCCCCEEE--ecccC--c---cceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3  45554  88986  2   2455544320 11111110  1122334456777777777776653  23345555566


Q ss_pred             HHHHHHHh
Q 022194          263 KIAEFLAS  270 (301)
Q Consensus       263 ~l~~~l~~  270 (301)
                      ++.+.|++
T Consensus       350 ~l~~~L~~  357 (431)
T TIGR03251       350 HLLARLHE  357 (431)
T ss_pred             HHHHHHHH
Confidence            66655543

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.29  E-value=3.7e-11  Score=108.66  Aligned_cols=250  Identities=14%  Similarity=0.050  Sum_probs=137.6

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHh----hc--CCCceEEecchHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAK----LD--KADRALCFTSGMAA   82 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~----~~--~~~~~i~~~sG~~a   82 (301)
                      .+++||.++  +.-+|..++.+..+....+..  . .......+.++...++.+.|.+    +.  +.+.+.+++||++|
T Consensus        58 ~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~--~-~l~~~~~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEA  134 (464)
T TIGR00699        58 NRLLDLYSQISSIPIGYNNPALLKAAQSPEMA--T-TLINRPALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDA  134 (464)
T ss_pred             CEEEEccCCHhhhcCCCCCHHHHHHHHHHHHH--H-hhcccccCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHH
Confidence            478888533  334787766666654321101  0 0001112345556667777644    44  23577888999999


Q ss_pred             HHHHHhccC---------------------------C---CCeEEEcCCCCccHHHHHhhhcc-----cCCc---EEEEe
Q 022194           83 LAAVTHLLG---------------------------T---GEEIVAGDDLYGGTDRLLSRVTP-----KTGV---VVKRV  124 (301)
Q Consensus        83 i~~~~~~~~---------------------------~---g~~Vlv~~~~y~~~~~~~~~~~~-----~~g~---~~~~~  124 (301)
                      +.+++.+.+                           +   ..+|+....+||+..........     ..+.   .+..+
T Consensus       135 vE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~  214 (464)
T TIGR00699       135 NELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQA  214 (464)
T ss_pred             HHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceec
Confidence            864444321                           1   23799999999998543211111     1011   00111


Q ss_pred             cC-------------------CCHHHHHhhcC---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc
Q 022194          125 NT-------------------CDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI  178 (301)
Q Consensus       125 ~~-------------------~d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~  178 (301)
                      +.                   .+++.+++.+.   +++.+|+++......|.+.+    +++|.++|++||+++|+||++
T Consensus       215 p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~  294 (464)
T TIGR00699       215 PFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQ  294 (464)
T ss_pred             CCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeee
Confidence            10                   13455666664   46899999988887888876    999999999999999999997


Q ss_pred             CC-ccccC---ccCCCCc--EEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH-
Q 022194          179 MS-PVLSR---PLELGAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA-  251 (301)
Q Consensus       179 ~~-~~~~~---~~~~~~d--i~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  251 (301)
                      .. +..+.   ....|..  ..+.+++|.+++.     |+++.+ +.+ ..........+...++..++++...++.+. 
T Consensus       295 tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~g-----G~~~~~-~~~-~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~  367 (464)
T TIGR00699       295 TGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTA-----GYFFHD-PAF-RPNKPYRQFNTWMGDPSRALILREIIQEIKR  367 (464)
T ss_pred             eCCCCCcchhHHHhcCCCCCCCEEEehhhhccC-----Cccccc-hhc-cCCCCcccccCCCCCHHHHHHHHHHHHHHHh
Confidence            52 22121   1122322  3345589999431     333332 222 100111233344556777777776766653 


Q ss_pred             -HHHHHHHHHHHHHHHHHHh
Q 022194          252 -LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       252 -~~~~~~~~~~~~l~~~l~~  270 (301)
                       ...++..+..+++.+.|++
T Consensus       368 ~~l~~~~~~~g~~l~~~L~~  387 (464)
T TIGR00699       368 KDLLENVAHVGDYLYTGLED  387 (464)
T ss_pred             cCHHHHHHHHHHHHHHHHHH
Confidence             2334444444566666653

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.28  E-value=5e-11  Score=102.65  Aligned_cols=155  Identities=22%  Similarity=0.271  Sum_probs=121.4

Q ss_pred             HHHHHHHHHhhcCCCceEEe-cchHH----HHHHHHhcc-C----CCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           57 RDALESLLAKLDKADRALCF-TSGMA----ALAAVTHLL-G----TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~-~sG~~----ai~~~~~~~-~----~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      ..+|+++|+++.|.+.+-+- .+|++    ++.+|.+.- .    ..+.|||++.+|+...    ..+...|.+|+.|..
T Consensus       111 i~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNP----ASAam~G~~VV~V~~  186 (496)
T COG1003         111 IYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNP----ASAAMAGFKVVVVKC  186 (496)
T ss_pred             HHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCCh----hhHhhcCceEEEEec
Confidence            67899999999999965554 55553    334444432 1    3468999999999886    677788999999987


Q ss_pred             C-----CHHHHHhhcCCCceEEEEeCCCCCccccc-cHHHHHHHHHHcCCEEEEeCCcCCcc--ccCccCCCCcEEEecc
Q 022194          127 C-----DLDEVASAIGPWTKLVWVESPTNPRQQIC-DIRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSA  198 (301)
Q Consensus       127 ~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~-~l~~l~~l~~~~~~~li~D~~~~~~~--~~~~~~~~~di~~~S~  198 (301)
                      +     |+++|++++.+++.++++++|++ .|... ++.+|+++.|++|..+..|.+-.-..  ...|.+.|.|++=..+
T Consensus       187 ~~~G~VDlddLk~k~~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNL  265 (496)
T COG1003         187 DENGNVDLDDLRAKAEDNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVHLNL  265 (496)
T ss_pred             CCCCCccHHHHHHHhccceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEEeec
Confidence            5     89999999999999999999998 67775 69999999999999999999965433  3367888999999999


Q ss_pred             cccccCCC---CceeeEEEEc
Q 022194          199 TKFIAGHS---DVMAGVLAVK  216 (301)
Q Consensus       199 sK~~~g~~---g~~~g~~~~~  216 (301)
                      ||+|..|-   |.-+|-+..+
T Consensus       266 HKTF~iPHGGGGPG~GPvgVk  286 (496)
T COG1003         266 HKTFCIPHGGGGPGAGPVGVK  286 (496)
T ss_pred             ccccccCCCCCCCCCCceehH
Confidence            99986542   2224555554

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.26  E-value=3.1e-10  Score=108.39  Aligned_cols=191  Identities=18%  Similarity=0.204  Sum_probs=138.9

Q ss_pred             eeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCC-------chHHHHHHHHHhhcCCC--ceEEecchH---
Q 022194           13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-------PTRDALESLLAKLDKAD--RALCFTSGM---   80 (301)
Q Consensus        13 ~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~-------~~~~~l~~~l~~~~~~~--~~i~~~sG~---   80 (301)
                      +.+|- +..|++...|+++.+.....++    +...|.+|..       ...-+++..++++.|.+  ++-+...+|   
T Consensus        80 ~~~fi-G~G~y~~~~P~vi~~~i~~~~~----~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~a  154 (954)
T PRK12566         80 WTSLI-GMGYHGTVTPTVILRNVLENPG----WYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAA  154 (954)
T ss_pred             ccccc-cccccCCcCcHHHHHHHHhCch----hhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHH
Confidence            34454 5667888777877676666655    3445666632       22456778899999998  666777776   


Q ss_pred             HHHHHHHhccC-CCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 022194           81 AALAAVTHLLG-TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (301)
Q Consensus        81 ~ai~~~~~~~~-~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~  159 (301)
                      +|+.+..+..+ +..+|+|++..|+.+...++..++..|++++.      +++++.+.+++.+|++++|+. .|.+.+++
T Consensus       155 EA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------~~~~~~~~~~~~~v~vq~P~~-~G~i~d~~  227 (954)
T PRK12566        155 EAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------DAVDNLAAHAVFGALLQYPDT-HGEIRDLR  227 (954)
T ss_pred             HHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------cchhhcCCCCEEEEEEECCCC-ceEEccHH
Confidence            33433334333 25689999999999998888999999999875      344555666789999999987 79999999


Q ss_pred             HHHHHHHHcCCEEEEeCC-cCCccccCccCCCCcEEEecccc-----cccCCCCceeeEEEEcch
Q 022194          160 KIAEMAHAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~-~~~~~~~~~~~~~~di~~~S~sK-----~~~g~~g~~~g~~~~~~~  218 (301)
                      +|++++|+.|.++++-.- .+.+.+..|.++|+||++++..-     .||||   -.|++.++++
T Consensus       228 ~i~~~~h~~gal~~~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP---~ag~~a~~~~  289 (954)
T PRK12566        228 PLIDQLHGQQALACVAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGP---HAAYFACRDD  289 (954)
T ss_pred             HHHHHHHHcCCEEEEEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCC---CeeeeeehHH
Confidence            999999999988663322 35567778999999999986543     56555   3799998864

>PLN02452 phosphoserine transaminase

Probab=99.25  E-value=2.5e-10  Score=100.55  Aligned_cols=202  Identities=13%  Similarity=0.062  Sum_probs=132.2

Q ss_pred             HHHHHHHHHhhcCCC---ceEEe-cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEec------
Q 022194           57 RDALESLLAKLDKAD---RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN------  125 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~-~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~------  125 (301)
                      .+++++.|.++++.+   +++++ +|||.++. +++.++.+|+++++....+.+-  -+...++.+|...+...      
T Consensus        54 ~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~--r~~~~a~~~g~~~~~~~~~~~~~  131 (365)
T PLN02452         54 IQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSK--KAAKEAKKYCKTNVIASGKDEKY  131 (365)
T ss_pred             HHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHH--HHHHHHHHhCCCcEEEecCCCCC
Confidence            678888899999864   45665 45578885 6677888999888766544433  23455666665333331      


Q ss_pred             --CCCHHHHHhhcCCCceEEEEeCCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccc
Q 022194          126 --TCDLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (301)
Q Consensus       126 --~~d~~~l~~~l~~~~~~v~i~~~~np~G~~-~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~  201 (301)
                        ..++++++  .+++.+.|.+++..+.+|.. .|++++.+      +++|+|.+.+.+..+ +....++  ++.|.+|+
T Consensus       132 ~~~~~~~~~~--~~~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pidv~~~~v--~~~saqK~  201 (365)
T PLN02452        132 TKIPSVSEWE--LTPDAKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVDVSKYGV--IYAGAQKN  201 (365)
T ss_pred             CCCCChHHcC--CCCCCcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccCcccCHHHcCE--EEEecccc
Confidence              11344432  23568899999999999995 78877753      899999999988765 3444455  44699999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHH-----------hhhh-cCCCCCHHhHHHHHccccc------HHHHHHHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYF-----------LQNA-EGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQK  263 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~  263 (301)
                      + ||+|+  |+++.+++.+.+ ...           ..+. ..++.+....+++..++++      ++.+.++..++++.
T Consensus       202 l-GP~Gl--~~v~vr~~~l~~-~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~  277 (365)
T PLN02452        202 V-GPSGV--TIVIIRKDLIGN-ARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADL  277 (365)
T ss_pred             c-CCCCe--EEEEEcHHHHhh-cccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9 69985  888888665422 111           0011 1134444445555444443      44566778888889


Q ss_pred             HHHHHHhCCCc
Q 022194          264 IAEFLASHPRV  274 (301)
Q Consensus       264 l~~~l~~~~~v  274 (301)
                      +.+.|++.+++
T Consensus       278 l~~~l~~~~G~  288 (365)
T PLN02452        278 LYDAIDESNGF  288 (365)
T ss_pred             HHHHHHhCCCc
Confidence            99999886654

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.18  E-value=2.5e-09  Score=91.43  Aligned_cols=160  Identities=17%  Similarity=0.166  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhhcCCC-ceEEe-cchH-HHHH-HHHh-c----c---CC-----CCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           57 RDALESLLAKLDKAD-RALCF-TSGM-AALA-AVTH-L----L---GT-----GEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~-~sG~-~ai~-~~~~-~----~---~~-----g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      .-++++..++++|.+ +.+++ ++.+ ..+. ++.. +    .   +|     .-+.|++.|.|..+.    .+++.+|+
T Consensus        71 ipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHF----ai~E~~Gi  146 (425)
T PF12897_consen   71 IPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHF----AITEHFGI  146 (425)
T ss_dssp             -HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHH----HHHHHCT-
T ss_pred             hHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHH----HHHHhhCc
Confidence            778888899999887 44444 3333 3232 3322 1    1   11     235789999998776    88899999


Q ss_pred             EEEEecCC----CHHHHHhhcC--CCceEEEEe-CCCCCccccccHHHHHHHH----HHcCCEEEEeCCcCCcccc-C-c
Q 022194          120 VVKRVNTC----DLDEVASAIG--PWTKLVWVE-SPTNPRQQICDIRKIAEMA----HAHGALLLVDNSIMSPVLS-R-P  186 (301)
Q Consensus       120 ~~~~~~~~----d~~~l~~~l~--~~~~~v~i~-~~~np~G~~~~l~~l~~l~----~~~~~~li~D~~~~~~~~~-~-~  186 (301)
                      +.+.|++.    |+|.+|+.+.  +.+|.|+.. --+||||..+.=+.+.+++    ...+..|+.|++|....+. . +
T Consensus       147 emi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~  226 (425)
T PF12897_consen  147 EMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEP  226 (425)
T ss_dssp             EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS
T ss_pred             EEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeecccccc
Confidence            99999975    8999999983  678888765 6689999998755555554    3579999999999876551 1 1


Q ss_pred             c--------------CCCCcEEEecccccccCCCCceeeEEEEcchhHHH
Q 022194          187 L--------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (301)
Q Consensus       187 ~--------------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~  222 (301)
                      .              .-+..+.+.|+||....++|  .+++.++.+.+..
T Consensus       227 ~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaG--va~~aaS~~Nl~~  274 (425)
T PF12897_consen  227 RDALLNILDACAKAGNPDRVYVFASTSKITFPGAG--VAFFAASEANLAW  274 (425)
T ss_dssp             ------HHHHHHHTT-TTSEEEEEESTTTS-TTSS---EEEEE-HHHHHH
T ss_pred             chhhhHHHHHHHHcCCCCeEEEEecccccccCCcc--eeeeecCHHHHHH
Confidence            0              11356999999997655555  5888888665533

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.13  E-value=3.9e-09  Score=92.22  Aligned_cols=203  Identities=11%  Similarity=0.016  Sum_probs=128.6

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecc-hHHHHH-HHHhccCCCCeEE-EcCCCCccHHHHHhhhcccCCcEEEEecC----
Q 022194           57 RDALESLLAKLDKAD---RALCFTS-GMAALA-AVTHLLGTGEEIV-AGDDLYGGTDRLLSRVTPKTGVVVKRVNT----  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~s-G~~ai~-~~~~~~~~g~~Vl-v~~~~y~~~~~~~~~~~~~~g~~~~~~~~----  126 (301)
                      .+++++.|+++++.+   +++++++ ||.+.. +.+.++.+||+++ +....+.+.  -|...++.+| .+..+..    
T Consensus        51 ~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~--r~~~ea~~~g-~v~~~~~~~~~  127 (364)
T PRK12462         51 LAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSR--KAIGEASRVA-AMRVVWDGAAS  127 (364)
T ss_pred             HHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHH--HHHHHHHhcC-CceEecCcCCC
Confidence            677888899999874   4666655 467775 6677889999665 333333322  2335555555 3333321    


Q ss_pred             -----CCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEeccccc
Q 022194          127 -----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF  201 (301)
Q Consensus       127 -----~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~  201 (301)
                           .+++++  .++++.+.|.+++..+.+|...+     ++.+.+++++|+|.+.+.+..+-..+ ..|+++.+.+|.
T Consensus       128 ~~~~~p~~~~~--~~~~d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~-~~dvi~agsQKn  199 (364)
T PRK12462        128 GYRTLPSLAEL--DWDARAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVE-AYGMVYAHAQKN  199 (364)
T ss_pred             CCCcCCCHHHh--ccCCCCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChH-HccEEEeecccc
Confidence                 133443  23356788999999999999986     33334689999999988766543222 239999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHH----------Hhhh-hcCCCCCHHhHHHHHcccccH-------HHHHHHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELY----------FLQN-AEGSGLAPFDCWICLRGVKTM-------ALRVEKQQDNAQK  263 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~  263 (301)
                      ++ |+|+  ++++.+++.+.+.-.          .... ...++++....+.+...++++       +.+.++..+.++.
T Consensus       200 lg-P~Gl--tvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~  276 (364)
T PRK12462        200 LG-PAGV--TVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAM  276 (364)
T ss_pred             CC-CCce--EEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            95 9885  788888765422111          0011 122445555555554454443       4456777888888


Q ss_pred             HHHHHHhCCC
Q 022194          264 IAEFLASHPR  273 (301)
Q Consensus       264 l~~~l~~~~~  273 (301)
                      +.+.+.+.++
T Consensus       277 ly~~id~~~~  286 (364)
T PRK12462        277 LYATLDALNE  286 (364)
T ss_pred             HHHHHHhCCC
Confidence            8888887653

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.02  E-value=1.9e-08  Score=85.15  Aligned_cols=213  Identities=23%  Similarity=0.226  Sum_probs=128.2

Q ss_pred             CCchHHHHHHHH----HhhcCCC---ce--EEecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHH-HhhhcccCCcEE
Q 022194           53 GNPTRDALESLL----AKLDKAD---RA--LCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRL-LSRVTPKTGVVV  121 (301)
Q Consensus        53 g~~~~~~l~~~l----~~~~~~~---~~--i~~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~-~~~~~~~~g~~~  121 (301)
                      |+...++++...    -+.|+.+   ..  +=.-||+.|. .+..++++|+++|.--+.-.+++... +..-.+.....-
T Consensus        80 Gne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~S  159 (477)
T KOG2467|consen   80 GNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATS  159 (477)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeee
Confidence            555566666443    3557765   22  2335777665 67788999999998555433333211 000001111111


Q ss_pred             EEe-------cC----CCHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCC-----cccc
Q 022194          122 KRV-------NT----CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-----PVLS  184 (301)
Q Consensus       122 ~~~-------~~----~d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~-----~~~~  184 (301)
                      ++.       +.    .|-|.||+... -.+++|+.-...++  ...|.+++.++|.+.|+++.+|.+|..     +..+
T Consensus       160 iyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~SaY~--R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vip  237 (477)
T KOG2467|consen  160 IYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGTSAYS--RLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIP  237 (477)
T ss_pred             eecccCceeeCCCCCceehHHHHHHHHhcCCcEEEeccccch--hhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCC
Confidence            111       11    17788876554 46777765433333  467899999999999999999999854     4566


Q ss_pred             CccCCCCcEEEecccccccCCCCceeeEEEEcchh--------------HHHHHHHhhh--hcC----CCCCHHhHHHHH
Q 022194          185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER--------------LAKELYFLQN--AEG----SGLAPFDCWICL  244 (301)
Q Consensus       185 ~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~--------------~~~~~~~~~~--~~~----~~~~~~~~~~~~  244 (301)
                      +|.++ +||++.+.||++-||   |+|.|..++-.              +.+++.....  ..|    .+....+.++..
T Consensus       238 sPFey-~DiVTTTTHKsLRGP---Rg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQ  313 (477)
T KOG2467|consen  238 SPFEY-CDIVTTTTHKSLRGP---RGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQ  313 (477)
T ss_pred             Ccccc-cceeeccccccccCC---cceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHh
Confidence            77776 899999999999887   56888776410              1121111110  000    111222222222


Q ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          245 RGVKTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       245 ~~l~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..-..+.++.++..+|++.+.+.|.++
T Consensus       314 a~tpefk~Yq~qV~~Nakala~~l~~~  340 (477)
T KOG2467|consen  314 AMTPEFKEYQKQVLKNAKALASALISR  340 (477)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            233457888899999999999999875

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=99.01  E-value=1.2e-08  Score=87.82  Aligned_cols=224  Identities=14%  Similarity=0.149  Sum_probs=143.2

Q ss_pred             CCCccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecchH-HHHHHHHhc----cC----CC-----CeE-EEcCCCC
Q 022194           44 NGPYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGM-AALAAVTHL----LG----TG-----EEI-VAGDDLY  103 (301)
Q Consensus        44 ~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG~-~ai~~~~~~----~~----~g-----~~V-lv~~~~y  103 (301)
                      ...+.|... .-.. ..++-..+.++.|-+   +.++.++|+ +.++++...    ..    .|     +-| ..++-+|
T Consensus       128 tn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesH  207 (510)
T KOG0629|consen  128 TNMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESH  207 (510)
T ss_pred             CCCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccch
Confidence            345555432 2222 455666666776554   688888887 545544321    11    11     234 4666788


Q ss_pred             ccHHHHHhhhcccCC---cEEEEecCC-----CHHHHHhhcC---CC---ceEEEEeCCCCCccccccHHHHHHHHHHcC
Q 022194          104 GGTDRLLSRVTPKTG---VVVKRVNTC-----DLDEVASAIG---PW---TKLVWVESPTNPRQQICDIRKIAEMAHAHG  169 (301)
Q Consensus       104 ~~~~~~~~~~~~~~g---~~~~~~~~~-----d~~~l~~~l~---~~---~~~v~i~~~~np~G~~~~l~~l~~l~~~~~  169 (301)
                      +++..    .+...|   -.++.++.+     .+++||+.+.   .+   +..|-.+...+-.|.+.|+..|+++|++|+
T Consensus       208 YSi~k----aAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~  283 (510)
T KOG0629|consen  208 YSIKK----AAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHK  283 (510)
T ss_pred             hhHHH----HHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcC
Confidence            87763    333333   455556654     6788887774   22   566666777888899999999999999999


Q ss_pred             CEEEEeCCcCCccccCcc-------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh------------
Q 022194          170 ALLLVDNSIMSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA------------  230 (301)
Q Consensus       170 ~~li~D~~~~~~~~~~~~-------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~------------  230 (301)
                      .|+++|.+++.|.+-...       -..++.+.-+.||+++.|  ++.+.++.+.+.+..+.......            
T Consensus       284 lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gap--lqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS  361 (510)
T KOG0629|consen  284 LWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAP--LQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVS  361 (510)
T ss_pred             EEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCc--chhhHHHHHHHHHHHhhcccchhhhhccCceeecc
Confidence            999999999987653211       113678999999999765  46677777766554433221110            


Q ss_pred             ---------cCCCCCHHhHHHHH--cccccHHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          231 ---------EGSGLAPFDCWICL--RGVKTMALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       231 ---------~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                               .|.-...+-.|.+.  ++..-+++.+++..++++++.+.|++.++
T Consensus       362 ~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~  415 (510)
T KOG0629|consen  362 YDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREG  415 (510)
T ss_pred             cccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence                     11122333355553  34555788899999999999999998654

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=98.96  E-value=1e-08  Score=89.28  Aligned_cols=217  Identities=17%  Similarity=0.177  Sum_probs=143.5

Q ss_pred             HHHHHHHHhhcCCCce---EEecchHHHHHHH-Hh---c-cC-CC---CeEEEcCCCCccHHHHHhhhcccCCcEEEEec
Q 022194           58 DALESLLAKLDKADRA---LCFTSGMAALAAV-TH---L-LG-TG---EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (301)
Q Consensus        58 ~~l~~~l~~~~~~~~~---i~~~sG~~ai~~~-~~---~-~~-~g---~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~  125 (301)
                      .+.-.-++.+++.++.   ..+++||+++.+. ..   . .. .|   -+++++...    ...|++..+.++++++.++
T Consensus       123 ~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v----~~a~eK~a~yf~v~l~~V~  198 (491)
T KOG1383|consen  123 AECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNV----HAAFEKAARYFEVELREVP  198 (491)
T ss_pred             HHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHH----HHHHHHHHhhEEEEEEeee
Confidence            3444556777766532   2345567774322 11   1 11 11   123333333    3345688889999999999


Q ss_pred             CC------CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH-cCCEEEEeCCcCCcccc----Ccc-----CC
Q 022194          126 TC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGALLLVDNSIMSPVLS----RPL-----EL  189 (301)
Q Consensus       126 ~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~-~~~~li~D~~~~~~~~~----~~~-----~~  189 (301)
                      .+      |+..+.+.+++++.+++.+-|+.|+|.+.++++|.++..+ +++.+++|.+-+..+.+    ...     ..
T Consensus       199 ~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p  278 (491)
T KOG1383|consen  199 LDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVP  278 (491)
T ss_pred             ccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCC
Confidence            76      8999999999999999999999999999999999999998 99999999998866552    111     12


Q ss_pred             CCcEEEecccccccCCCCceeeEEEEcchhHHH-HHHHhhhhcC------------CCCCHHhHHHHHccc--ccHHHHH
Q 022194          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEG------------SGLAPFDCWICLRGV--KTMALRV  254 (301)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~~~l--~~~~~~~  254 (301)
                      +..-...+.||+-..|+|.  ++++.+.+.+.. ++..-....|            .+.....+|+.+-.+  +-+.+..
T Consensus       279 ~V~Sisa~~HKYGl~~~G~--~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~  356 (491)
T KOG1383|consen  279 GVTSISADGHKYGLAPAGS--SWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENT  356 (491)
T ss_pred             CceeEeeccceeeeeecCc--EEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHH
Confidence            3456677789986678874  666666554422 2111111111            222334466654433  4477888


Q ss_pred             HHHHHHHHHHHHHHHhCCCcceEecC
Q 022194          255 EKQQDNAQKIAEFLASHPRVKKVNYA  280 (301)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~v~~v~~p  280 (301)
                      ++..++++.+++.+++.+.+..+.-|
T Consensus       357 ~~ive~~~~l~egie~i~~i~i~gkp  382 (491)
T KOG1383|consen  357 QNIVETARKLREGIENIKGIKIVGKP  382 (491)
T ss_pred             HHHHHHHHHHHHhhhccccceecCCC
Confidence            99999999999999998776544433

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.85  E-value=4.6e-09  Score=94.65  Aligned_cols=174  Identities=20%  Similarity=0.277  Sum_probs=126.6

Q ss_pred             CCCCCCccccCeeecceeecCCCCCCCCccccCCCCch-HHHHH------HHHHhhcCCC--ceEEecchHHHHH-H-HH
Q 022194           19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPT-RDALE------SLLAKLDKAD--RALCFTSGMAALA-A-VT   87 (301)
Q Consensus        19 ~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~-~~~l~------~~l~~~~~~~--~~i~~~sG~~ai~-~-~~   87 (301)
                      +-.|++...|+++.+..+..+.    +..+|.+|..+. +-+|+      .-++++.|.+  ++-++..||+|-. + +.
T Consensus       124 GmGYyn~~vP~~I~RNilenp~----W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~  199 (1001)
T KOG2040|consen  124 GMGYYNTHVPAVILRNILENPG----WYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAAEAMALC  199 (1001)
T ss_pred             ccccccccCcHHHHHHhhhCCc----ceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHHHHHHHH
Confidence            4569999999999999888777    566788874322 44444      4466777776  6778888885543 2 22


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA  167 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~  167 (301)
                      .-..++++.++...+|+....+.+..++.+|+++...+..   +.. ...++...+++..|.. -|.+.+..++++++++
T Consensus       200 ~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~~~---~~~-~s~~~v~gvlvQYP~t-~G~i~d~~el~~~a~~  274 (1001)
T KOG2040|consen  200 NRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSDIK---EAD-YSSKDVSGVLVQYPDT-EGSVLDFDELVELAHA  274 (1001)
T ss_pred             HhhcccceEEecCCCCcchhhhhhccccccceeEEecCHH---Hhh-ccccceeEEEEEcCCC-CCcccCHHHHHHHhhc
Confidence            2244456799999999999888877788888886554422   221 1225688999999988 6999999999999999


Q ss_pred             cCCEEEEeCC-cCCccccCccCCCCcEEEeccccc
Q 022194          168 HGALLLVDNS-IMSPVLSRPLELGADIVMHSATKF  201 (301)
Q Consensus       168 ~~~~li~D~~-~~~~~~~~~~~~~~di~~~S~sK~  201 (301)
                      .+..+++-.- .+...+..|.++|+||+++|...+
T Consensus       275 ~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRF  309 (1001)
T KOG2040|consen  275 NGSLVVMATDLLALTILRPPGEFGADIAVGSSQRF  309 (1001)
T ss_pred             cCceEEEeehhhHHHccCChhhcCceeeecccccc
Confidence            9987665443 344556678899999999997764

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.82  E-value=6.2e-08  Score=81.92  Aligned_cols=203  Identities=18%  Similarity=0.222  Sum_probs=112.1

Q ss_pred             HHHHHHHHHhhc---C-C---CceEEecchH-HHHH-HHHhccCC------CCeEEEcCCCCccHHHHHhhhcccCCcEE
Q 022194           57 RDALESLLAKLD---K-A---DRALCFTSGM-AALA-AVTHLLGT------GEEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (301)
Q Consensus        57 ~~~l~~~l~~~~---~-~---~~~i~~~sG~-~ai~-~~~~~~~~------g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~  121 (301)
                      ..+|++.|.++.   | +   +.-|++++|+ +.+. ++.++...      .-.|+...|.|+.+.... ..+.....+.
T Consensus        45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt-~~f~s~~y~w  123 (363)
T PF04864_consen   45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQT-DFFDSRLYKW  123 (363)
T ss_dssp             -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHC-CCT-BTTEEE
T ss_pred             cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHH-HhccccCccc
Confidence            677888877775   2 1   2577888885 6664 45554221      237899999999886432 3333322222


Q ss_pred             EEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-ccCCCCcEEEecccc
Q 022194          122 KRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATK  200 (301)
Q Consensus       122 ~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~S~sK  200 (301)
                        -.  |.......-.+.+-+=++++||||.|.+-.     .+++.-+..+|.|-+|-.+.+.. ....+-|+.++|+||
T Consensus       124 --~G--da~~~~~~~~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYYWPhyTpI~~~aD~DiMLFT~SK  194 (363)
T PF04864_consen  124 --AG--DASNFKNSDNPSPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYYWPHYTPITAPADHDIMLFTLSK  194 (363)
T ss_dssp             --EE--ECCCGTT-S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S-B--SEEEEEHHH
T ss_pred             --cc--cHHhhccCCCCCCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeeecccccccCCCCCCceEEEEEec
Confidence              11  222221111123334488999999998731     12244567789999998877642 333467999999999


Q ss_pred             cccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccH--------------HHHHHHHHHHHHHHHH
Q 022194          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--------------ALRVEKQQDNAQKIAE  266 (301)
Q Consensus       201 ~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~~~~l~~  266 (301)
                      .- |.+|-|.||.+.+++.+.+++.......+.+.+-..+..+++-++.+              +--.+.+.++=++|++
T Consensus       195 ~T-GHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~  273 (363)
T PF04864_consen  195 LT-GHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRA  273 (363)
T ss_dssp             HC-S-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred             cc-CccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHH
Confidence            97 89999999999999999998887777777777777665554444332              1122344455556666


Q ss_pred             HHHh
Q 022194          267 FLAS  270 (301)
Q Consensus       267 ~l~~  270 (301)
                      .+.+
T Consensus       274 ~~~~  277 (363)
T PF04864_consen  274 AVSA  277 (363)
T ss_dssp             HHCC
T ss_pred             HHHh
Confidence            6654

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.75  E-value=1.3e-07  Score=81.90  Aligned_cols=129  Identities=14%  Similarity=0.103  Sum_probs=86.4

Q ss_pred             CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--------CHHHHHhhcC---CCceEEEEeCCCCCcccccc-H
Q 022194           91 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIG---PWTKLVWVESPTNPRQQICD-I  158 (301)
Q Consensus        91 ~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~-l  158 (301)
                      ..++.|+.+.-.+.+..    ..+...|.+++.++..        |++.++++++   ++..+.++++++...+...| +
T Consensus        99 ~~a~~Viw~ridqkSc~----kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i  174 (389)
T PF05889_consen   99 PKAKYVIWPRIDQKSCF----KAIERAGLEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDI  174 (389)
T ss_dssp             CT--EEEEEEEETHHHH----HHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----H
T ss_pred             cCCceEEEeeccccchH----HHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccH
Confidence            35788888888887766    5556778888888842        5667776665   46677788888877888887 9


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCccc------cCccCCC-CcEEEecccccccCCCCceeeEEEEcchhHHHHHH
Q 022194          159 RKIAEMAHAHGALLLVDNSIMSPVL------SRPLELG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (301)
Q Consensus       159 ~~l~~l~~~~~~~li~D~~~~~~~~------~~~~~~~-~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~  225 (301)
                      ++|+++|++||++.++-.+|+.-..      ......| .|+++.|+.|.|-.|-|  ++.+++.++.....+.
T Consensus       175 ~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPvG--gai~As~~~~~i~~vs  246 (389)
T PF05889_consen  175 EEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPVG--GAIMASFDPSGILAVS  246 (389)
T ss_dssp             HHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEESS--HEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecCC--CcEEEecCHHHHHHHH
Confidence            9999999999999999999996211      1111223 58999999998877755  5666666666655433

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.72  E-value=7.5e-07  Score=75.54  Aligned_cols=213  Identities=19%  Similarity=0.135  Sum_probs=136.0

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhcc-----CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLL-----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~-----~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      |+.....|++...+.||.+..+-+..|..|-. .+-.++     .||.+.+++++.|..+.+   ...+..|..++.++.
T Consensus        77 gsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr---~h~~~ng~~~~n~~~  153 (471)
T COG3033          77 GSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTR---GHIQINGATPRNVYV  153 (471)
T ss_pred             ccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchh---HHHHhcCCccccccc
Confidence            55568889999999999988888888864432 222222     356666677777766653   555666666665553


Q ss_pred             C---------------CHHHHHhhcC----CCceEEEEeCCCCCcccc----ccHHHHHHHHHHcCCEEEEeCCcCC-cc
Q 022194          127 C---------------DLDEVASAIG----PWTKLVWVESPTNPRQQI----CDIRKIAEMAHAHGALLLVDNSIMS-PV  182 (301)
Q Consensus       127 ~---------------d~~~l~~~l~----~~~~~v~i~~~~np~G~~----~~l~~l~~l~~~~~~~li~D~~~~~-~~  182 (301)
                      +               |++.+++.++    +++..|+++-.+|..|..    .++++..++|++|++.++.|.+... -.
T Consensus       154 ~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENa  233 (471)
T COG3033         154 DEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENA  233 (471)
T ss_pred             cccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhh
Confidence            2               7888888887    467788777667765554    3699999999999999999998531 11


Q ss_pred             cc---C-cc-------------CCCCcEEEecccccccCCCCceeeEEEEcchhH---HHHHHHhhhh-----cCCCCCH
Q 022194          183 LS---R-PL-------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL---AKELYFLQNA-----EGSGLAP  237 (301)
Q Consensus       183 ~~---~-~~-------------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~---~~~~~~~~~~-----~~~~~~~  237 (301)
                      +.   . +.             -.-+|-++.|.-|---.+   ++|+++.+++.+   ...++.....     +-.+++.
T Consensus       234 YFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvn---mGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~G  310 (471)
T COG3033         234 YFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVN---MGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAG  310 (471)
T ss_pred             hhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceec---cccEEEecCccHHHHHHHHHhheEeeccccccCcccc
Confidence            11   0 00             013688888888853233   579999998853   3333322211     1134444


Q ss_pred             HhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHhC
Q 022194          238 FDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       238 ~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ....++..++..-  ...++...+..++|.+.|.+.
T Consensus       311 rdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~  346 (471)
T COG3033         311 RDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEA  346 (471)
T ss_pred             hhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence            4444444444431  334456667778888988874

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=98.65  E-value=2.4e-06  Score=71.13  Aligned_cols=133  Identities=17%  Similarity=0.170  Sum_probs=89.9

Q ss_pred             ecchHHHHH----HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC----cEEEEecCC----CHHHHHhhcCCCc--e
Q 022194           76 FTSGMAALA----AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG----VVVKRVNTC----DLDEVASAIGPWT--K  141 (301)
Q Consensus        76 ~~sG~~ai~----~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g----~~~~~~~~~----d~~~l~~~l~~~~--~  141 (301)
                      .-|||.|+.    .+.+++. ...|.+++|.+..+.    .+++..|    ..+.+++.+    |.+.+.+.++..+  .
T Consensus       105 slsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~----~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~s  179 (410)
T KOG1412|consen  105 SLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHH----AIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGS  179 (410)
T ss_pred             eccccchhhhhHHHHHHhcc-cceeEecCCchhHHH----HHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCc
Confidence            456776663    2333444 567999999999987    4445555    233444433    7888888777432  3


Q ss_pred             EEEEe-CCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCccccCcc----------CCCC-cEEEecccccccCCC
Q 022194          142 LVWVE-SPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSRPL----------ELGA-DIVMHSATKFIAGHS  206 (301)
Q Consensus       142 ~v~i~-~~~np~G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~----------~~~~-di~~~S~sK~~~g~~  206 (301)
                      ++++. ..+||||.-+   ...+|+++.++.+.+.+.|-+|-..+.+++.          +.|. -+++-||+|.| |.-
T Consensus       180 i~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNf-GlY  258 (410)
T KOG1412|consen  180 IIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNF-GLY  258 (410)
T ss_pred             EEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhc-ccc
Confidence            44444 4599999875   3788999999999999999998655544432          2343 48999999998 555


Q ss_pred             CceeeEEE
Q 022194          207 DVMAGVLA  214 (301)
Q Consensus       207 g~~~g~~~  214 (301)
                      +=|.|.+.
T Consensus       259 neRvGnlt  266 (410)
T KOG1412|consen  259 NERVGNLT  266 (410)
T ss_pred             cccccceE
Confidence            55677653

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=98.46  E-value=1.7e-07  Score=77.49  Aligned_cols=180  Identities=16%  Similarity=0.133  Sum_probs=102.6

Q ss_pred             hcCCCceEEecchHHHHHHHHhcc----CCCCeEEEcCCCCccHHHHHhhh-----cccCC---cEEEEecCC-------
Q 022194           67 LDKADRALCFTSGMAALAAVTHLL----GTGEEIVAGDDLYGGTDRLLSRV-----TPKTG---VVVKRVNTC-------  127 (301)
Q Consensus        67 ~~~~~~~i~~~sG~~ai~~~~~~~----~~g~~Vlv~~~~y~~~~~~~~~~-----~~~~g---~~~~~~~~~-------  127 (301)
                      +-+..-.++++||++|..+.+++.    +..| |++-+..||++....-.+     -+-.+   -+++.+.+.       
T Consensus        99 lPeLsvc~F~NSGSEANDLALRLAR~ftkhqD-vItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK  177 (452)
T KOG1403|consen   99 LPELSVCFFVNSGSEANDLALRLARNFTKHQD-VITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGK  177 (452)
T ss_pred             CCCceEEEEecCCchhhHHHHHHHHhhcccCc-eEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccc
Confidence            334445778899999987665553    3344 666688998875321111     01011   122222211       


Q ss_pred             ---------C-----HHHHHhhcC------CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-c-
Q 022194          128 ---------D-----LDEVASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-P-  181 (301)
Q Consensus       128 ---------d-----~~~l~~~l~------~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~-  181 (301)
                               |     .+.+++.++      ..+.+.+-++-.+--|.+.|    ++++++..|.+|.++|.||++.. | 
T Consensus       178 ~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGR  257 (452)
T KOG1403|consen  178 FRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGR  257 (452)
T ss_pred             cccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccc
Confidence                     1     244555553      24455555666666677755    78899999999999999999742 2 


Q ss_pred             ---cccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh--hhcCCCCCHHhHHHHHcccccH
Q 022194          182 ---VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSGLAPFDCWICLRGVKTM  250 (301)
Q Consensus       182 ---~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~  250 (301)
                         .++....++....+.++.|.+|.  |...+.++..+ ++.+.+....  .+-+.+-+|.+++..+.-++..
T Consensus       258 vG~hyWafq~y~fiPDIVtmgKpmGN--GhPVa~Vattk-eIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~  328 (452)
T KOG1403|consen  258 VGSHYWAFQTYNFIPDIVTMGKPMGN--GHPVAAVATTK-EIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVC  328 (452)
T ss_pred             cchhhhhhhhhccccchheecccCCC--CCeeeEEeccH-HHHHHhccccceehhccCCCchhHHHHHHHHHHH
Confidence               22333334444455569999854  34578887764 4555433221  1222345666676666655544

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=98.42  E-value=8.5e-06  Score=68.85  Aligned_cols=213  Identities=16%  Similarity=0.132  Sum_probs=125.1

Q ss_pred             cchHHHHH---HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC---C----CHHHHHhhcCC---CceEE
Q 022194           77 TSGMAALA---AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C----DLDEVASAIGP---WTKLV  143 (301)
Q Consensus        77 ~sG~~ai~---~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~---~~~~v  143 (301)
                      -|||.|+.   .++...-++..|.+++|+|..+.    .+....|+.+..+..   .    |++.+.+-+..   ...++
T Consensus       127 lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~----~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~il  202 (427)
T KOG1411|consen  127 LSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHK----NIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIIL  202 (427)
T ss_pred             ccCcchhhHHHHHHHhhccccceeecCCcccccC----ccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEE
Confidence            45666653   33444446889999999999886    677777877655442   2    66665555542   22333


Q ss_pred             EEeCCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCccccCcc----------CCC-CcEEEecccccccCCCCce
Q 022194          144 WVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSRPL----------ELG-ADIVMHSATKFIAGHSDVM  209 (301)
Q Consensus       144 ~i~~~~np~G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~----------~~~-~di~~~S~sK~~~g~~g~~  209 (301)
                      +-...|||||.-+   ..++|.++.++.+.+-++|.+|-....++..          +.| ..+++-|+.|.+ |.-|=|
T Consensus       203 LhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNM-GLYgER  281 (427)
T KOG1411|consen  203 LHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNM-GLYGER  281 (427)
T ss_pred             eehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhc-chhhhc
Confidence            3357899999875   4788999999999999999998655444322          223 357889999998 444446


Q ss_pred             eeEE--EEcchhHHHHHHHhhhh--cCCC-CCHHh-HHHH----------HcccccHHHHHHHHHHHHHHHHHHHHhCC-
Q 022194          210 AGVL--AVKGERLAKELYFLQNA--EGSG-LAPFD-CWIC----------LRGVKTMALRVEKQQDNAQKIAEFLASHP-  272 (301)
Q Consensus       210 ~g~~--~~~~~~~~~~~~~~~~~--~~~~-~~~~~-~~~~----------~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-  272 (301)
                      .|.+  ++++.....++......  .+.. .+|.. +..+          .+++.++....+++...++.+.+.|+... 
T Consensus       282 vGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs  361 (427)
T KOG1411|consen  282 VGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGS  361 (427)
T ss_pred             cceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCC
Confidence            6655  44555544443332221  1111 11111 1111          11222334445666777777777776531 


Q ss_pred             ---------CcceEecCCCCCCcchHHHHhh
Q 022194          273 ---------RVKKVNYAGLPEHPGHELHYSQ  294 (301)
Q Consensus       273 ---------~v~~v~~p~~~~~~~~~~~~~~  294 (301)
                               .+.-..+.|++......+.+++
T Consensus       362 ~~~W~hI~~QIGMF~fTgl~peQv~~l~ke~  392 (427)
T KOG1411|consen  362 PGNWSHITKQIGMFCFTGLNPEQVDWLTKEY  392 (427)
T ss_pred             CccHHHHHHhhheeeecCCCHHHHHHHHhhh
Confidence                     1222445666655555555544

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.35  E-value=1.1e-05  Score=73.53  Aligned_cols=210  Identities=23%  Similarity=0.203  Sum_probs=137.1

Q ss_pred             HHHHHHHHHhhcCCCceEEe-cchH----HHHHHHHhccC-CC----CeEEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           57 RDALESLLAKLDKADRALCF-TSGM----AALAAVTHLLG-TG----EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~-~sG~----~ai~~~~~~~~-~g----~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      ..+|++.|+++.|.+..-+- +||.    +.+.+|.+.+. +|    ...+++-..|+...    ..+...|.+++.+..
T Consensus       584 f~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNP----ASA~MagmkvvpV~~  659 (1001)
T KOG2040|consen  584 FTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNP----ASAAMAGMKVVPVGC  659 (1001)
T ss_pred             HHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCCh----hhHHhcCCEEEEeec
Confidence            56788999999999865553 5564    34556665543 22    34678888888775    667788899998886


Q ss_pred             C-----CHHHHHhhcC---CCceEEEEeCCCCCccccc-cHHHHHHHHHHcCCEEEEeCCcCC--ccccCccCCCCcEEE
Q 022194          127 C-----DLDEVASAIG---PWTKLVWVESPTNPRQQIC-DIRKIAEMAHAHGALLLVDNSIMS--PVLSRPLELGADIVM  195 (301)
Q Consensus       127 ~-----d~~~l~~~l~---~~~~~v~i~~~~np~G~~~-~l~~l~~l~~~~~~~li~D~~~~~--~~~~~~~~~~~di~~  195 (301)
                      +     |..+|+++..   ++..+++++.|++ .|... .+++++++.++||.-+..|.+-.-  -.+..+...|+|+.=
T Consensus       660 ~~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~H  738 (1001)
T KOG2040|consen  660 DANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVCH  738 (1001)
T ss_pred             cCCCCccHHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecccCCcccccccee
Confidence            5     7777776654   5788999999998 57775 499999999999999999999642  234567888999999


Q ss_pred             ecccccccCCC---CceeeEEEEcchhHHHHHHHh--------------hhh----cCCC--CCHHhHHHHHcccccHHH
Q 022194          196 HSATKFIAGHS---DVMAGVLAVKGERLAKELYFL--------------QNA----EGSG--LAPFDCWICLRGVKTMAL  252 (301)
Q Consensus       196 ~S~sK~~~g~~---g~~~g~~~~~~~~~~~~~~~~--------------~~~----~~~~--~~~~~~~~~~~~l~~~~~  252 (301)
                      -.+||+|.-|.   |.-+|-+..++ .+...+-.-              ...    +|..  ++-.-++..+-+..-+.+
T Consensus       739 LNLHKTFcIPHGGGGPg~gPIgVK~-HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~  817 (1001)
T KOG2040|consen  739 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKD  817 (1001)
T ss_pred             ecccceeeecCCCCCCCCCccchhh-hccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccch
Confidence            99999874331   21234454432 222211100              000    1111  111112222333344455


Q ss_pred             HHHHHHHHHHHHHHHHHhCC
Q 022194          253 RVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~  272 (301)
                      .-+...-|+.++.++|+++=
T Consensus       818 as~~AiLNaNYMakRLe~hY  837 (1001)
T KOG2040|consen  818 ASKIAILNANYMAKRLESHY  837 (1001)
T ss_pred             hhHHHhhhhHHHHHHHhhcc
Confidence            55677788899999998863

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=98.08  E-value=0.00016  Score=63.62  Aligned_cols=216  Identities=19%  Similarity=0.276  Sum_probs=123.8

Q ss_pred             CCchHHHHH----HHHHhhcCCC-----------ceEEecchHHHH-HHHHhc-------cCCC-----------C-eEE
Q 022194           53 GNPTRDALE----SLLAKLDKAD-----------RALCFTSGMAAL-AAVTHL-------LGTG-----------E-EIV   97 (301)
Q Consensus        53 g~~~~~~l~----~~l~~~~~~~-----------~~i~~~sG~~ai-~~~~~~-------~~~g-----------~-~Vl   97 (301)
                      ..|...+|+    +|+++..+.+           -.++.++.+++. .++++.       ++.+           + .+.
T Consensus       107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y  186 (511)
T KOG0628|consen  107 SSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAY  186 (511)
T ss_pred             cCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEE
Confidence            457777777    7888776543           356667776654 333331       2222           1 244


Q ss_pred             EcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcCC-----Cce-EEEEeCCCCCccccccHHHHHHHHH
Q 022194           98 AGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP-----WTK-LVWVESPTNPRQQICDIRKIAEMAH  166 (301)
Q Consensus        98 v~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-----~~~-~v~i~~~~np~G~~~~l~~l~~l~~  166 (301)
                      .++-+|.+..    +.+...+++++.++.+     +.+.|++++.+     -+- .++.+-..+.+-...++.+|..+|+
T Consensus       187 ~SDqahssve----ka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~  262 (511)
T KOG0628|consen  187 CSDQAHSSVE----KACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCR  262 (511)
T ss_pred             ecCcccchHH----HhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhh
Confidence            6666766664    6667778888888876     45667666652     233 3343444444445568999999999


Q ss_pred             HcCCEEEEeCCcCCccccCc----cCCC---CcEEEecccccccCCCCceeeEEEEcch-hHH-----HHHHHhhhh---
Q 022194          167 AHGALLLVDNSIMSPVLSRP----LELG---ADIVMHSATKFIAGHSDVMAGVLAVKGE-RLA-----KELYFLQNA---  230 (301)
Q Consensus       167 ~~~~~li~D~~~~~~~~~~~----~~~~---~di~~~S~sK~~~g~~g~~~g~~~~~~~-~~~-----~~~~~~~~~---  230 (301)
                      ++|+|+++|.+|+.+++..+    +..|   +|-+-+..||++...-.  ...+..++. .+.     +.++.....   
T Consensus       263 ~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfD--Cs~lWvkd~~~~~~~~~vdp~yL~h~~~~~  340 (511)
T KOG0628|consen  263 EEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFD--CSPLWVKDGTKLSRAFNVDPLYLKHAYQGS  340 (511)
T ss_pred             hcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeee--eecceeecCceeeeeeecChHhhcchhhcc
Confidence            99999999999987665422    2222   57788888998654322  223333322 110     001111111   


Q ss_pred             ----------cCCCCCHHhHHHHHc--ccccHHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          231 ----------EGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       231 ----------~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                                .+...-..-.|..++  +.+.+++++++..+.++.+...+.+-+..
T Consensus       341 ~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~F  396 (511)
T KOG0628|consen  341 APDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRF  396 (511)
T ss_pred             CCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence                      111112223344333  34456777778888888888877765544

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=97.95  E-value=7.9e-05  Score=62.24  Aligned_cols=141  Identities=13%  Similarity=0.152  Sum_probs=100.3

Q ss_pred             EecchHHHHH-HHHhccCC---CCeEEEcCCCCccHHHHHhhhcccCCcEEEE----ecCC------CHHHHHhhcC---
Q 022194           75 CFTSGMAALA-AVTHLLGT---GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR----VNTC------DLDEVASAIG---  137 (301)
Q Consensus        75 ~~~sG~~ai~-~~~~~~~~---g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~----~~~~------d~~~l~~~l~---  137 (301)
                      +.++=|..+. ++.++.+|   .-+|+....+|++-.-.++..++..|+.+..    +.+.      ..+++.+.+.   
T Consensus       133 vmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkng  212 (465)
T KOG3846|consen  133 VMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNG  212 (465)
T ss_pred             hHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcC
Confidence            3344455554 56677776   4578888888887665666666766664322    2221      2344444443   


Q ss_pred             CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCcc-CCCCcEEEecccccccCCCCceeeEEEE
Q 022194          138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL-ELGADIVMHSATKFIAGHSDVMAGVLAV  215 (301)
Q Consensus       138 ~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~-~~~~di~~~S~sK~~~g~~g~~~g~~~~  215 (301)
                      +.+.+|+++..+.-||...++.+|...-+..|+++=.|=+|..+-.+.-+ .+|.|+.|-...|++..++|-++|..+-
T Consensus       213 DeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvH  291 (465)
T KOG3846|consen  213 DEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVH  291 (465)
T ss_pred             CeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccceeeee
Confidence            56888999999999999999999997777789999999999987655333 5699999999999887766655666654

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=97.65  E-value=0.00014  Score=55.93  Aligned_cols=57  Identities=18%  Similarity=0.359  Sum_probs=44.0

Q ss_pred             ccCC-CCch-HHHHHHHHHhhcC--C--C-ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCcc
Q 022194           49 YTRS-GNPT-RDALESLLAKLDK--A--D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGG  105 (301)
Q Consensus        49 y~~~-g~~~-~~~l~~~l~~~~~--~--~-~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~  105 (301)
                      |..+ |.+. |+++.+++.+.+|  .  + +.|++++| ++++. ++..+++|||.|+++.|.|++
T Consensus        88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         88 FQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            5555 7766 8999999998876  2  2 45666666 58885 667789999999999999974

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=97.59  E-value=0.00066  Score=58.35  Aligned_cols=199  Identities=17%  Similarity=0.141  Sum_probs=112.8

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecch-HHHHH-HHHhccCCCCe--EEEcCCCCccHHHHHhhhcccCCcEEEEecC---
Q 022194           57 RDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEE--IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~-~~~~~~~~g~~--Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~---  126 (301)
                      ..+.++.++++++.+   +++++.+| |.... +.+.++.++..  |..  ..|.....   ..++..+......+.   
T Consensus        52 ~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~--g~Ws~~a~---~eA~~~~~~~~~~~~~~~  126 (365)
T COG1932          52 LEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDT--GAWSEFAI---KEAKKVGKQPKLIDARIE  126 (365)
T ss_pred             HHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCceeEee--eehhHhHH---HHHHHhccccccccccee
Confidence            677888899999876   57777777 45564 55677766543  333  23332221   222233221111111   


Q ss_pred             -------CCHHHHHhhcCCCceEEEEeCCCCCcccccc-HHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecc
Q 022194          127 -------CDLDEVASAIGPWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA  198 (301)
Q Consensus       127 -------~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~-l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~  198 (301)
                             .+++...  +.++...|.+++..+-+|...+ ...+.   .  +.++++|.+.......-.. ...|++.++.
T Consensus       127 ~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~v~~~p~~~---~--~~~~v~D~SS~ilsr~iDv-sk~dviyaga  198 (365)
T COG1932         127 EAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVEVPELPDIG---S--DGLLVADASSAILSRPIDV-SKYDVIYAGA  198 (365)
T ss_pred             ccCccCCCChhhcc--cCCCccEEEEecCCcccceEccCCCCCC---C--CceEEEecccHHhcCCCCh-hHcceEEEeh
Confidence                   1222222  2334444777766666777654 12111   1  2889999987655543222 2468999999


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHHh-------------hhhcCCCCCHHhHHHHHccccc------HHHHHHHHHH
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYFL-------------QNAEGSGLAPFDCWICLRGVKT------MALRVEKQQD  259 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~  259 (301)
                      .|.+ ||.|  .++++.+++.+.+ ....             ....-++++.+..+.....+++      ++...++..+
T Consensus       199 QKnl-GpaG--ltvvIvr~~~l~r-~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~  274 (365)
T COG1932         199 QKNL-GPAG--LTVVIVRPDLLER-AESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQA  274 (365)
T ss_pred             hhcc-Cccc--eEEEEEcHHHHhc-ccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999 7888  4888888665433 2211             0111244455554444333333      4667788888


Q ss_pred             HHHHHHHHHHhCC
Q 022194          260 NAQKIAEFLASHP  272 (301)
Q Consensus       260 ~~~~l~~~l~~~~  272 (301)
                      +++.|-+++.+.+
T Consensus       275 ka~~LY~~id~s~  287 (365)
T COG1932         275 KAQLLYDWIDKSD  287 (365)
T ss_pred             HHHHHHHHHHhCC
Confidence            8999999998753

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=97.12  E-value=0.0025  Score=54.57  Aligned_cols=73  Identities=22%  Similarity=0.219  Sum_probs=48.8

Q ss_pred             HHHHHhhcC------CCceEEEEeCCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcCCcc----ccCc----cCCC
Q 022194          129 LDEVASAIG------PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMSPV----LSRP----LELG  190 (301)
Q Consensus       129 ~~~l~~~l~------~~~~~v~i~~~~np~G~~~----~l~~l~~l~~~~~~~li~D~~~~~~~----~~~~----~~~~  190 (301)
                      ++++|+.+.      ..+.+++++.....-|.-.    -+..|.+++++||+.+|+||++..+.    +..-    ++.-
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P  334 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP  334 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence            345555553      2466788887777777663    28899999999999999999986432    2221    2223


Q ss_pred             CcEEEeccccccc
Q 022194          191 ADIVMHSATKFIA  203 (301)
Q Consensus       191 ~di~~~S~sK~~~  203 (301)
                      .|++  +|||-|.
T Consensus       335 pD~v--TFSKK~q  345 (484)
T KOG1405|consen  335 PDVV--TFSKKFQ  345 (484)
T ss_pred             ccce--ehhhhhh
Confidence            4555  5888774

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=96.18  E-value=0.045  Score=45.24  Aligned_cols=97  Identities=18%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             CHHHHHhhcCC-CceEEEE--eCCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCcccc------CccCCC-CcEEEe
Q 022194          128 DLDEVASAIGP-WTKLVWV--ESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELG-ADIVMH  196 (301)
Q Consensus       128 d~~~l~~~l~~-~~~~v~i--~~~~np~G~~-~~l~~l~~l~~~~~~~li~D~~~~~~~~~------~~~~~~-~di~~~  196 (301)
                      |++.+++.+.+ ....|+.  +..+.-.-.. ..+++|+.+|..|+++-|+.++|+.-...      ...+.| .|.++.
T Consensus       142 dleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~grida~vq  221 (432)
T KOG3843|consen  142 DLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECGRIDAFVQ  221 (432)
T ss_pred             hHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhccHHHHHH
Confidence            67777777763 2332222  2111111122 34999999999999999999999853221      122333 588999


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~  226 (301)
                      |+.|.|.-|-|  ++++.+-++.+++.+..
T Consensus       222 sldknf~vpvg--gaiia~fk~n~iq~iak  249 (432)
T KOG3843|consen  222 SLDKNFMVPVG--GAIIAAFKDNFIQEIAK  249 (432)
T ss_pred             Hhhhcceeecc--hhHhhHhHHHHHHHHHH
Confidence            99999977633  33444444556554433

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=88.57  E-value=2  Score=35.31  Aligned_cols=91  Identities=18%  Similarity=0.213  Sum_probs=53.1

Q ss_pred             hHHHHHHHHhccCCCCeEE-EcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           79 GMAALAAVTHLLGTGEEIV-AGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        79 G~~ai~~~~~~~~~g~~Vl-v~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                      |..+-..+..+++++..|. +.++.-...    ...++..|++++..+.+|.+.|.++++.- ..|++..+.........
T Consensus         8 G~~G~~v~~~L~~~~~~V~~l~R~~~~~~----~~~l~~~g~~vv~~d~~~~~~l~~al~g~-d~v~~~~~~~~~~~~~~   82 (233)
T PF05368_consen    8 GNQGRSVVRALLSAGFSVRALVRDPSSDR----AQQLQALGAEVVEADYDDPESLVAALKGV-DAVFSVTPPSHPSELEQ   82 (233)
T ss_dssp             SHHHHHHHHHHHHTTGCEEEEESSSHHHH----HHHHHHTTTEEEES-TT-HHHHHHHHTTC-SEEEEESSCSCCCHHHH
T ss_pred             cHHHHHHHHHHHhCCCCcEEEEeccchhh----hhhhhcccceEeecccCCHHHHHHHHcCC-ceEEeecCcchhhhhhh
Confidence            4333344455555665554 333331111    13445679999999999999999999854 44444444332333444


Q ss_pred             HHHHHHHHHHcCCEEEE
Q 022194          158 IRKIAEMAHAHGALLLV  174 (301)
Q Consensus       158 l~~l~~l~~~~~~~li~  174 (301)
                      ...+++.|++.|+-.++
T Consensus        83 ~~~li~Aa~~agVk~~v   99 (233)
T PF05368_consen   83 QKNLIDAAKAAGVKHFV   99 (233)
T ss_dssp             HHHHHHHHHHHT-SEEE
T ss_pred             hhhHHHhhhccccceEE
Confidence            67799999999986665

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02672 methionine S-methyltransferase

Probab=85.04  E-value=23  Score=36.33  Aligned_cols=178  Identities=19%  Similarity=0.128  Sum_probs=91.6

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHHHHHhccCCCCeEE---EcCCCCccHHHHHh----hhc
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALAAVTHLLGTGEEIV---AGDDLYGGTDRLLS----RVT  114 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~~~~~~~~~g~~Vl---v~~~~y~~~~~~~~----~~~  114 (301)
                      .|.+. |... |.-+...+..+++.    ++++++.+=..|+.-++++..|.-.++   +.......+...++    ...
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (1082)
T PLN02672        421 PCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLPKKWLTSLAIENATSD  500 (1082)
T ss_pred             CCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCCHHHHhHhhhhccccc
Confidence            34443 4433 44444555555554    477788888888865555554421111   11111111111111    011


Q ss_pred             cc--CCcEEEEecCCCHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCC---------cc
Q 022194          115 PK--TGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS---------PV  182 (301)
Q Consensus       115 ~~--~g~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~---------~~  182 (301)
                      ..  ..+.+++.|.. -+.+.+.+++ ++.+|+..-.....-+..-++.|.+.+++.|++++.|.+-..         |+
T Consensus       501 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (1082)
T PLN02672        501 SKSDDVITVIEAPRQ-SDLVIELIKKLKPQVVVTGMADFEMRTSTAFEHLLNVTAEIGARLFLDISDHLELSSLPGSNGV  579 (1082)
T ss_pred             CccCCeEEEEeCCCc-chHHHHHHHhCCCeEEEEeccchhhhhHHHHHHHHHHHHhhCcEEEEehhhheeeccCCCcccH
Confidence            11  22334343333 2344555543 667777665555444445689999999999999999998321         11


Q ss_pred             cc----CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh
Q 022194          183 LS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  228 (301)
Q Consensus       183 ~~----~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~  228 (301)
                      +.    .+....+ .++..+-|.- --+.+-.++++.-++.+.+.+....
T Consensus       580 ~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  627 (1082)
T PLN02672        580 LKYLAGHPLPSHA-AIICGLVKNQ-VYSDLEVAFVISENEAVLKALSKTG  627 (1082)
T ss_pred             HHHhcCCCCCcch-hHhhhhhhcc-ccccceEEEEecCcHHHHHHHHHHH
Confidence            11    1222222 3444466653 3356677888877666666554433

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=82.06  E-value=5.1  Score=34.80  Aligned_cols=103  Identities=17%  Similarity=0.245  Sum_probs=71.1

Q ss_pred             HHHHH-HHHhccCCCCeEEEcCC-CCc-cHHHHHhhhcccCCcEEEEecCC-C-----HHHHHhhcCCCceEEEEeCC--
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDD-LYG-GTDRLLSRVTPKTGVVVKRVNTC-D-----LDEVASAIGPWTKLVWVESP--  148 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~-~y~-~~~~~~~~~~~~~g~~~~~~~~~-d-----~~~l~~~l~~~~~~v~i~~~--  148 (301)
                      |..+. +...+.+.|.+|++... +|- +..+.++.+.++.|++++.-..- |     .+.++.+..++..+|++...  
T Consensus       153 TTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGR  232 (340)
T COG0552         153 TTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGR  232 (340)
T ss_pred             HhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCccc
Confidence            56675 56667788888887653 221 22344567788899998885422 3     46677777789999998744  


Q ss_pred             -CCCccccccHHHHHHHHHHcC------CEEEEeCCcCCcc
Q 022194          149 -TNPRQQICDIRKIAEMAHAHG------ALLLVDNSIMSPV  182 (301)
Q Consensus       149 -~np~G~~~~l~~l~~l~~~~~------~~li~D~~~~~~~  182 (301)
                       ||-..-..+|+.|.+++++..      ++++.|..-+.-.
T Consensus       233 Lhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna  273 (340)
T COG0552         233 LHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA  273 (340)
T ss_pred             ccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH
Confidence             555555567899999998865      6777799977543

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=81.28  E-value=16  Score=29.54  Aligned_cols=93  Identities=20%  Similarity=0.211  Sum_probs=56.6

Q ss_pred             CceEEecchHHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-CHHHHHhhcCCCceEEEEeCCC
Q 022194           71 DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-DLDEVASAIGPWTKLVWVESPT  149 (301)
Q Consensus        71 ~~~i~~~sG~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~v~i~~~~  149 (301)
                      ..++++++|..|...+..+++.|-.|.+.+|....-.   ....+..  .+.++.-. ..+++     ....+|+ ..++
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l---~~l~~~~--~i~~~~~~~~~~dl-----~~~~lVi-~at~   78 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESEL---TLLAEQG--GITWLARCFDADIL-----EGAFLVI-AATD   78 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHH---HHHHHcC--CEEEEeCCCCHHHh-----CCcEEEE-ECCC
Confidence            3688899999888888888888888877777665333   2333333  33333322 22333     2334444 3344


Q ss_pred             CCccccccHHHHHHHHHHcCCEEE-EeCCc
Q 022194          150 NPRQQICDIRKIAEMAHAHGALLL-VDNSI  178 (301)
Q Consensus       150 np~G~~~~l~~l~~l~~~~~~~li-~D~~~  178 (301)
                      ++    ..-.+|.+.|++.++++. +|+..
T Consensus        79 d~----~ln~~i~~~a~~~~ilvn~~d~~e  104 (205)
T TIGR01470        79 DE----ELNRRVAHAARARGVPVNVVDDPE  104 (205)
T ss_pred             CH----HHHHHHHHHHHHcCCEEEECCCcc
Confidence            32    223679999999998884 56653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2

Probab=80.66  E-value=7  Score=30.82  Aligned_cols=96  Identities=9%  Similarity=0.130  Sum_probs=61.2

Q ss_pred             ch-H-HHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEe--cCCCHHHHHhhcCCCceEEEEeCCCCCcc
Q 022194           78 SG-M-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV--NTCDLDEVASAIGPWTKLVWVESPTNPRQ  153 (301)
Q Consensus        78 sG-~-~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~--~~~d~~~l~~~l~~~~~~v~i~~~~np~G  153 (301)
                      +| | +.+..+..+-..|.+|++..|....-.. -..+....|......  +.+++.++...+..++.+|++.-.+.-+ 
T Consensus        12 sGKS~eLi~~~~~~~~~~~~v~~~kp~~D~R~~-~~~I~s~~g~~~~~~~~~~~~~~~~~~~~~~~~dvI~IDEaQFf~-   89 (176)
T PF00265_consen   12 SGKSTELIRRIHRYEIAGKKVLVFKPAIDTRYG-EDKIVSHDGISLEAIVDPIDNLFEIIDILENDYDVIGIDEAQFFD-   89 (176)
T ss_dssp             SSHHHHHHHHHHHHHHTT-EEEEEEESTSCCCC-SSEEEHTTSCEEEEESSEESSGGGGGGGCCTTCSEEEESSGGGST-
T ss_pred             ChhHHHHHHHHHHHHhCCCeEEEEEecccCcCC-CCeEEecCCCcccccccchhhHHHHHHHhccCCCEEEEechHhhH-
Confidence            45 4 4445666665667788876664321100 003445566766666  4556777777777778999998777643 


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCC
Q 022194          154 QICDIRKIAEMAHAHGALLLVDNS  177 (301)
Q Consensus       154 ~~~~l~~l~~l~~~~~~~li~D~~  177 (301)
                        .++.++++.+.++|+.+++=.-
T Consensus        90 --~~i~~l~~~~~~~g~~Vi~~GL  111 (176)
T PF00265_consen   90 --EQIVQLVEILANKGIPVICAGL  111 (176)
T ss_dssp             --TTHHHHHHHHHHTT-EEEEEEE
T ss_pred             --HHHHHHHHHHHhCCCeEEEEee
Confidence              5678899999999999987544

7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)

Probab=80.37  E-value=4.2  Score=29.42  Aligned_cols=88  Identities=15%  Similarity=0.176  Sum_probs=57.6

Q ss_pred             HHHHhhhcccCCcEEEEecCC-CHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCcc
Q 022194          107 DRLLSRVTPKTGVVVKRVNTC-DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPV  182 (301)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~--~~~li~D~~~~~~~  182 (301)
                      ...+...++..|.++..++.. +.+++.+.+. .++++|.++....  .......++++..|+.  ++.+++=..+....
T Consensus        17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~--~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~   94 (121)
T PF02310_consen   17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMT--PNLPEAKRLARAIKERNPNIPIVVGGPHATAD   94 (121)
T ss_dssp             HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSS--THHHHHHHHHHHHHTTCTTSEEEEEESSSGHH
T ss_pred             HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCc--CcHHHHHHHHHHHHhcCCCCEEEEECCchhcC
Confidence            344567788889999999766 5677766654 6788888765433  3456678888888876  67888877665433


Q ss_pred             ccCccC--CCCcEEEe
Q 022194          183 LSRPLE--LGADIVMH  196 (301)
Q Consensus       183 ~~~~~~--~~~di~~~  196 (301)
                      ....++  .+.|.++.
T Consensus        95 ~~~~l~~~~~~D~vv~  110 (121)
T PF02310_consen   95 PEEILREYPGIDYVVR  110 (121)
T ss_dssp             HHHHHHHHHTSEEEEE
T ss_pred             hHHHhccCcCcceecC
Confidence            322222  46665553

Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=80.19  E-value=15  Score=28.52  Aligned_cols=87  Identities=21%  Similarity=0.214  Sum_probs=56.0

Q ss_pred             EecchH--HHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCc
Q 022194           75 CFTSGM--AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR  152 (301)
Q Consensus        75 ~~~sG~--~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~  152 (301)
                      ++.+|+  -+-.++..+++.|-+|....-.-....    .   ..++++...+..|.+.+.+++. ...+|+.+.+..+.
T Consensus         2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~----~---~~~~~~~~~d~~d~~~~~~al~-~~d~vi~~~~~~~~   73 (183)
T PF13460_consen    2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAE----D---SPGVEIIQGDLFDPDSVKAALK-GADAVIHAAGPPPK   73 (183)
T ss_dssp             EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHH----H---CTTEEEEESCTTCHHHHHHHHT-TSSEEEECCHSTTT
T ss_pred             EEECCCChHHHHHHHHHHHCCCEEEEEecCchhcc----c---ccccccceeeehhhhhhhhhhh-hcchhhhhhhhhcc
Confidence            444444  444567777777777764433322221    2   6788999999999999999998 45555555433322


Q ss_pred             cccccHHHHHHHHHHcCC
Q 022194          153 QQICDIRKIAEMAHAHGA  170 (301)
Q Consensus       153 G~~~~l~~l~~l~~~~~~  170 (301)
                       .....+.+.+.+++.++
T Consensus        74 -~~~~~~~~~~a~~~~~~   90 (183)
T PF13460_consen   74 -DVDAAKNIIEAAKKAGV   90 (183)
T ss_dssp             -HHHHHHHHHHHHHHTTS
T ss_pred             -ccccccccccccccccc
Confidence             34447788888888775

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
1ibj_A	464	Crystal Structure Of Cystathionine Beta-Lyase From		1e-144
3elp_B	410	Structure Of Cystationine Gamma Lyase Length = 410		1e-67
2nmp_A	403	Crystal Structure Of Human Cystathionine Gamma Lyas		1e-67
3qhx_A	392	Crystal Structure Of Cystathionine Gamma-Synthase M		2e-61
3e6g_A	400	Crystal Structure Of Xometc, A Cystathionine C-Lyas		5e-61
3mkj_A	398	Methionine Gamma-Lyase From Citrobacter Freundii Wi		6e-60
2rfv_A	398	High Resolution Structure Of L-Methionine Gamma-Lya		4e-59
3jwa_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		9e-59
1y4i_A	398	Crystal Structure Of Citrobacter Freundii L-Methion		1e-58
3jw9_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		1e-58
1n8p_A	393	Crystal Structure Of Cystathionine Gamma-lyase From		2e-57
3aej_A	389	Reaction Intermediate Structure Of Entamoeba Histol		7e-52
1e5e_A	404	Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin		3e-51
3acz_A	389	Crystal Structure Of Entamoeba Histolytica Methioni		4e-51
1pg8_A	398	Crystal Structure Of L-Methionine Alpha-, Gamma-Lya		1e-50
3vk2_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		4e-50
1gc0_A	398	Crystal Structure Of The Pyridoxal-5'-Phosphate Dep		4e-50
1cs1_A	386	Cystathionine Gamma-Synthase (Cgs) From Escherichia		7e-48
1pff_A	331	Crystal Structure Of Homocysteine Alpha-, Gamma-Lya		2e-42
3ndn_A	414	Crystal Structure Of O-Succinylhomoserine Sulfhydry		4e-40
1qgn_A	445	Cystathionine Gamma-Synthase From Nicotiana Tabacum		1e-39
3ri6_A	430	A Novel Mechanism Of Sulfur Transfer Catalyzed By O		1e-32
2ctz_A	421	Crystal Structure Of O-Acetyl Homoserine Sulfhydryl		9e-32
2cb1_A	412	Crystal Structure Of O-Actetyl Homoserine Sulfhydry		5e-30
2fq6_A	415	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		2e-24
1cl2_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		2e-24
1cl1_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		9e-24

>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464

Iteration: 1
 Score =  508 bits (1308), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 235/294 (79%), Positives = 265/294 (90%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138
Query: 61  ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ES            CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258
Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318
Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQ
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQ 372

>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410

Iteration: 1
 Score =  253 bits (646), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/267 (45%), Positives = 174/267 (65%), Gaps = 1/267 (0%)
Query: 25  ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
           A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE              F SG+AA  
Sbjct: 41  AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 100
Query: 85  AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVW 144
            +THLL  G++I+  DD+YGGT+R   +V  + G+ +  V+   +  + +AI P TKLVW
Sbjct: 101 TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 160
Query: 145 VESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIA 203
           +E+PTNP Q++ DI   A + H HG ++LV DN+ MSP   RPL LGADI M+SATK++ 
Sbjct: 161 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 220
Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+ G+++V  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK   N   
Sbjct: 221 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMA 280
Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHEL 290
           +A+FL S+P V+KV Y GLP HP HEL
Sbjct: 281 VAQFLESNPWVEKVIYPGLPSHPQHEL 307

>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403

Iteration: 1
 Score =  253 bits (645), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/267 (45%), Positives = 174/267 (65%), Gaps = 1/267 (0%)
Query: 25  ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
           A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE              F SG+AA  
Sbjct: 37  AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 96
Query: 85  AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVW 144
            +THLL  G++I+  DD+YGGT+R   +V  + G+ +  V+   +  + +AI P TKLVW
Sbjct: 97  TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 156
Query: 145 VESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIA 203
           +E+PTNP Q++ DI   A + H HG ++LV DN+ MSP   RPL LGADI M+SATK++ 
Sbjct: 157 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 216
Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+ G+++V  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK   N   
Sbjct: 217 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMA 276
Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHEL 290
           +A+FL S+P V+KV Y GLP HP HEL
Sbjct: 277 VAQFLESNPWVEKVIYPGLPSHPQHEL 303

>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392

Iteration: 1
 Score =  232 bits (592), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/291 (43%), Positives = 173/291 (59%), Gaps = 3/291 (1%)
Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESXXX 65
           G++T  ++     DP  GA++ P+Y ++TF Q       G Y+Y R+GNPTR ALE+   
Sbjct: 17  GLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALA 76
Query: 66  XXXXXXXXXCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
                     F+SGMAA   A+  +L  G+ +V  DD YGGT RL+ +V     V    V
Sbjct: 77  AVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPV 136
Query: 125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
              DLD V +AI P T+L+WVE+PTNP   I DI  IA++     A +LVDN+  SP L 
Sbjct: 137 ALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ 196
Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
           +PL LGAD+V+HS T +I GHSDV+ G L    E L +   FLQN  G+   PFD ++ +
Sbjct: 197 QPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTM 256
Query: 245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           RG+KT+ LR+++  +NA  +AEFLA HP +  V Y GLP HPGH +   Q+
Sbjct: 257 RGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQM 307

>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400

Iteration: 1
 Score =  231 bits (588), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 127/291 (43%), Positives = 180/291 (61%), Gaps = 5/291 (1%)
Query: 9   VSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXX 67
           ++TL ++     DP  GA+  P+Y T+T+ Q S  E+  ++Y+R+ NPTR A E      
Sbjct: 20  LATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAAL 79
Query: 68  XXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNT 126
                   F SGMAA + V  LL  G  +VA DDLYGGT RL  RV  +T G+    V+ 
Sbjct: 80  EGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL 139
Query: 127 CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP 186
            D     +AI   TK+VW+E+PTNP  ++ DI  IA +A  HG L +VDN+  SP+L RP
Sbjct: 140 TDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRP 199
Query: 187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGE--RLAKELYFLQNAEGSGLAPFDCWICL 244
           L LGAD+V+HSATK++ GHSD++ G+ AV G+   LA+++ FLQN+ G    PFD ++ L
Sbjct: 200 LSLGADLVVHSATKYLNGHSDMVGGI-AVVGDNAELAEQMAFLQNSIGGVQGPFDSFLAL 258
Query: 245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           RG+KT+ LR+    +NA  +A++L +HP ++KV Y GL  HP H L   Q+
Sbjct: 259 RGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQM 309

>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398

Iteration: 1
 Score =  227 bits (579), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 179/306 (58%), Gaps = 11/306 (3%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR
Sbjct: 1   MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52  SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE                SG++A+   +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           S   PK G+ V  V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
           LL+VDN+ MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +  +  L++
Sbjct: 181 LLVVDNTFMSPYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
             G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +E
Sbjct: 241 ITGGXMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 290 LHYSQV 295
           L   Q+
Sbjct: 301 LGQRQM 306

>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398

Iteration: 1
 Score =  224 bits (572), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 179/306 (58%), Gaps = 11/306 (3%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR
Sbjct: 1   MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52  SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE                SG++A+   +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           S   PK G+ V+ V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GA
Sbjct: 121 SHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
           LL+VDN+ MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
             G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 290 LHYSQV 295
           L   Q+
Sbjct: 301 LGQRQM 306

>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398

Iteration: 1
 Score =  223 bits (569), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 178/306 (58%), Gaps = 11/306 (3%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR
Sbjct: 1   MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52  SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE                SG++A+   +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           S   PK G+ V  V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
           LL+VDN+ MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
             G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 290 LHYSQV 295
           L   Q+
Sbjct: 301 LGQRQM 306

>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398

Iteration: 1
 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/299 (40%), Positives = 177/299 (59%), Gaps = 11/299 (3%)
Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
           G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR GNPT D
Sbjct: 8   GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59  ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE                SG++A+   +  L   G+ IV+   +YG T   LS   PK 
Sbjct: 68  ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
           G+ V+ V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+
Sbjct: 128 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 236
            MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++  G  ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +EL   Q+
Sbjct: 248 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQM 306

>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398

Iteration: 1
 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/299 (40%), Positives = 176/299 (58%), Gaps = 11/299 (3%)
Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
           G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR GNPT D
Sbjct: 8   GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59  ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE                SG++A+   +  L   G+ IV+   +YG T   LS   PK 
Sbjct: 68  ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
           G+ V  V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+
Sbjct: 128 GINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 236
            MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++  G  ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +EL   Q+
Sbjct: 248 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQM 306

>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393

Iteration: 1
 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 122/299 (40%), Positives = 174/299 (58%), Gaps = 7/299 (2%)
Query: 2   SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDAL 60
           +++E    +T  ++     D +G++  P+  + TFKQ S A   G Y+Y+RS NP R+ L
Sbjct: 1   TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60
Query: 61  ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           E              F+SG A  A +   L  G   V+  D+YGGT R  ++V    GV 
Sbjct: 61  ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA----LLLVDN 176
               N   L+++   I   TKLVW+E+PTNP  ++ DI+K+A++   H A    +L+VDN
Sbjct: 121 TSFTNDL-LNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179
Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           + +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPS 239
Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQ 294
           PFD W+  RG+KT+ LRV +   +A KIAEFLA+    V  VNY GL  HP +++   Q
Sbjct: 240 PFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQ 298

>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389

Iteration: 1
 Score =  200 bits (509), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 103/276 (37%), Positives = 159/276 (57%), Gaps = 9/276 (3%)
Query: 29  PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
           P++QT+TF   S  +           + Y+R GNPT +  E              F SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81  AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
            A+++ T   L  G+ ++AGD LYG T  L +   P+ G+ V  ++T D+++V +A  P 
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
           TK+V++ESP NP  ++ DI+ IA + H  GA L+VD +  SP   +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 259
           K+I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+ +R++   +
Sbjct: 205 KYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHME 264
Query: 260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           N  K+A+FL  H ++ KVN+ GL   PGH++   Q+
Sbjct: 265 NGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQM 300

>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404

Iteration: 1
 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 104/286 (36%), Positives = 167/286 (58%), Gaps = 11/286 (3%)
Query: 21  DPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXX 72
           D +GA   P+YQT+TF   +  + G         Y YTR GNPT   LE           
Sbjct: 20  DQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEA 79
Query: 73  XXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
               +SGM A+AA V  +L  G+ +++ + LYG T  L      K G+ V  +NT    E
Sbjct: 80  CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGE 139
Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLSRPLELG 190
           V   + P TK+V+ E+P NP  +I D+ ++ + AH+  G L++ DN+  SP+++ P++ G
Sbjct: 140 VKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFG 199
Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKT 249
            D+V+HSATK+I GH+DV+AG++  K + L +  +  +++  GS ++P D W+  RG+ T
Sbjct: 200 VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLST 259
Query: 250 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           + +R++ + +NA K+AE+L SHP V+KV Y G  +H GH++   Q+
Sbjct: 260 LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQM 305

>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389

Iteration: 1
 Score =  198 bits (503), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/276 (36%), Positives = 158/276 (57%), Gaps = 9/276 (3%)
Query: 29  PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
           P++QT+TF   S  +           + Y+R GNPT +  E              F SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81  AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
            A+++ T   L  G+ ++AGD LYG T  L +   P+ G+ V  ++T D+++V +A  P 
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
           TK+V++ESP NP  ++ DI+ IA + H  GA L+VD +  SP   +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 259
            +I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+ +R++   +
Sbjct: 205 XYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHME 264
Query: 260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           N  K+A+FL  H ++ KVN+ GL   PGH++   Q+
Sbjct: 265 NGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQM 300

>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398

Iteration: 1
 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 177/308 (57%), Gaps = 17/308 (5%)
Query: 7   PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
           PG +T  ++  + +DP    GAL  P+YQTATF  P+        A E   + Y+R  NP
Sbjct: 8   PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56  TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T + LE+               SGM A+ +    LL  G+E++ G+ LYG T   L    
Sbjct: 66  TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
            + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
           DN+  +P L RPLELGAD+V+HSATK+++GH D+ AG++ V  + L   +    L++  G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           + L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 293 SQVLSDNG 300
            Q+    G
Sbjct: 305 QQMSQPGG 312

>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398

Iteration: 1
 Score =  194 bits (494), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 176/308 (57%), Gaps = 17/308 (5%)
Query: 7   PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
           PG +T  ++  + +DP    GAL  P+YQTATF  P+        A E   + Y+R  NP
Sbjct: 8   PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56  TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T + LE+               SGM A+ +    LL  G+E++ G+ LYG T   L    
Sbjct: 66  TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
            + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
           DN+  +P L RPLELGAD+V+HSAT +++GH D+ AG++ V  + L   +    L++  G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           + L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 293 SQVLSDNG 300
            Q+    G
Sbjct: 305 QQMSQPGG 312

>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398

Iteration: 1
 Score =  194 bits (494), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 176/308 (57%), Gaps = 17/308 (5%)
Query: 7   PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
           PG +T  ++  + +DP    GAL  P+YQTATF  P+        A E   + Y+R  NP
Sbjct: 8   PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56  TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T + LE+               SGM A+ +    LL  G+E++ G+ LYG T   L    
Sbjct: 66  TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
            + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
           DN+  +P L RPLELGAD+V+HSAT +++GH D+ AG++ V  + L   +    L++  G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           + L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 293 SQVLSDNG 300
            Q+    G
Sbjct: 305 QQMSQPGG 312

>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386

Iteration: 1
 Score =  187 bits (474), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 104/278 (37%), Positives = 158/278 (56%), Gaps = 1/278 (0%)
Query: 18  NEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFT 77
           N+ + YG +  P++ ++T+      E   +DY+R GNPTRD ++                
Sbjct: 15  NDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 78  SGMAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 136
           +GM+A+  VT + L  G+ +VA  D YGG+ RL   +  +    V  V+  D   + +A+
Sbjct: 75  TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 137 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 196
               KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL LGAD+V+H
Sbjct: 135 AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLH 194
Query: 197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 256
           S T ++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG++T+  R+E 
Sbjct: 195 SCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMEL 254
Query: 257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
            Q NAQ I ++L + P VKK+ +  LPE+ GHE+   Q
Sbjct: 255 AQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQ 292

>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331

Iteration: 1
 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 137/221 (61%), Gaps = 3/221 (1%)
Query: 78  SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 136
           SGM A+AA V   L  G+ +++ D LYG T  L      K GV V  ++      +   +
Sbjct: 21  SGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHL 80
Query: 137 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPVLSRPLELGADIVM 195
            P T++V+ E+P NP  ++ DI    + A     +L +VDN+  SP+L+ PL+LG DIV+
Sbjct: 81  KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVV 140
Query: 196 HSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           HSATK+I GH+DV+AG++  + + +AK +   +++  G+ ++P D W+  RG  T+ +RV
Sbjct: 141 HSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRV 200
Query: 255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           ++  +NAQK+AEFL  H  VKKV Y GLP+HPGHE+   Q+
Sbjct: 201 KRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM 241

>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414

Iteration: 1
 Score =  161 bits (408), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 144/268 (53%), Gaps = 2/268 (0%)
Query: 30  LYQTATFKQPS-ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL-AAVT 87
           +Y +A   + S A E   Y Y+R GNPT    E                SGMAA+  ++ 
Sbjct: 55  VYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLG 114
Query: 88  HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVES 147
            LLG G+ +VA   L+G    + S + P+ GV    V+  DL +   A+   T+ V+ E+
Sbjct: 115 ALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFET 174
Query: 148 PTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 207
           P+NP Q + DI  + E+AHA GA +++DN   +P+L +   LG D+V++S T  I G   
Sbjct: 175 PSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGR 234
Query: 208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 267
           V+ G +    E +   +  L    G  ++ F+ W+ L+G++T+A+RV+    +AQ+IAEF
Sbjct: 235 VLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEF 294
Query: 268 LASHPRVKKVNYAGLPEHPGHELHYSQV 295
           L  HP V+ V Y  LP HP ++L   Q+
Sbjct: 295 LNGHPSVRWVRYPYLPSHPQYDLAKRQM 322

>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445

Iteration: 1
 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 11/281 (3%)
Query: 25  ALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCF 76
           A++TP+  T+ +     +E           ++Y R GNPT   LE               
Sbjct: 76  AITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLM 135
Query: 77  TSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA 135
            SGM A+   +  L+  G  IV   D Y  T   +  + PK G+    ++  D+  +  A
Sbjct: 136 ASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELA 195
Query: 136 IG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
           +      L + ESPTNP  +  DI  ++++ H  GAL+ +D +  +P+  + L LGAD+V
Sbjct: 196 LNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLV 255
Query: 195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           +HSATKF+ GH+DV+AG ++    +L  E+  L +  G  L P   ++ +RG+KT+ LRV
Sbjct: 256 LHSATKFLGGHNDVLAGCIS-GPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRV 314
Query: 255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           ++Q   A ++AE L +HP+V+ V Y GL  HP H +   Q+
Sbjct: 315 QQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQM 355

>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 152/303 (50%), Gaps = 29/303 (9%)
Query: 21  DPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXX 72
           D +GAL TP+Y  A F+  ++ E           + Y+RS NPT + LE           
Sbjct: 40  DVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALG 99
Query: 73  XXCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
                SGMAA++ A+  L   G+ +V  D L+G T  L  +  P  G+ V+ V+  D   
Sbjct: 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLA 159
Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
           V  A    TKL+++E+ +NP+ Q+ D+  ++++ HA G  L+VD ++  P L     LG 
Sbjct: 160 VEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGV 219
Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-------------YFLQNAE------- 231
           DI + S+TKFI+G    + GVL   G    K L              FL  A        
Sbjct: 220 DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279
Query: 232 GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 291
           G  L+P + ++   G++TMALR+E+   NAQ++A +L S P+VK VN+  LP+ P + + 
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIA 339
Query: 292 YSQ 294
             Q
Sbjct: 340 KRQ 342

>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421

Iteration: 1
 Score =  134 bits (336), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 139/303 (45%), Gaps = 42/303 (13%)
Query: 29  PLYQTAT--FKQPS------ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
           P+Y T +  FK P       A +     Y+R  NPT D LE                SG 
Sbjct: 24  PIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASGH 83
Query: 81  AA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL-DEVASAIGP 138
           AA   A+T L   G+ IV+  +LYGGT         + G+ V+  +  +  +E  +    
Sbjct: 84  AAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDE 143
Query: 139 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHS 197
            T+  WVES  NP   I D+  +A+ A   G  L+VDN+  M   L RPL  GA +V HS
Sbjct: 144 KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHS 203
Query: 198 ATKFIAGHSDVMAGVL---------------------AVKGERLAK---ELYFLQNA--- 230
            TK++ GH  V+AG +                        G RL +   EL F+  A   
Sbjct: 204 LTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVD 263
Query: 231 ----EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP 286
               +G  L PF+ W+ L G++T++LR E+  +N   +A +L   P+V  VNY GLP HP
Sbjct: 264 GLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHP 323
Query: 287 GHE 289
            H+
Sbjct: 324 HHD 326

>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412

Iteration: 1
 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 151/318 (47%), Gaps = 40/318 (12%)
Query: 21  DPYGALSTPLYQTATF--------KQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXX 72
           DP+GA+  P+Y  A +        ++  AT  G Y Y R  +PT  ALE           
Sbjct: 15  DPHGAVGLPIYAVAAYGFKTLEEGQERFATGEG-YVYARQKDPTAKALEERLKALEGALE 73
Query: 73  XXCFTSGMAALAAVTHLLGT-GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
                SG AA  A    L   G+E+VA   L+G T  L  +V    GV V+ V+  + + 
Sbjct: 74  AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEA 132
Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELG 190
           V  A+   T+ V+VE+  NP   + D+  +A +A   G  L+VDN+   +  L RPL  G
Sbjct: 133 VREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192
Query: 191 ADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQ--------------------- 228
           A +V+ S T + +GH  V+ G VL+ + E       FLQ                     
Sbjct: 193 AHVVVESLTXWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252
Query: 229 -----NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 283
                +  G  L+PF+ ++  +G++T+ALRV +  + A+ +AE L  HP+VK + Y GLP
Sbjct: 253 RTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLP 312
Query: 284 EHPGHELHYSQVLSDNGP 301
           E P H  +  + L+  GP
Sbjct: 313 EDPAHR-NARKYLASGGP 329

>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 125/250 (50%), Gaps = 4/250 (1%)
Query: 44  NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G  T  +L+              F  G AA+A ++   +  G+ ++  +  
Sbjct: 71  NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 130
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
           Y  +    S++  K GV     +     ++   + P TK+V++ESP +   ++ D+  I 
Sbjct: 131 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 190
Query: 163 EMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
               +    A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M G  AV   R 
Sbjct: 191 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARC 249
Query: 221 AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA 280
            ++L       G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+ 
Sbjct: 250 WEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHP 309
Query: 281 GLPEHPGHEL 290
            LP   GHE 
Sbjct: 310 ALPGSKGHEF 319

>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 125/253 (49%), Gaps = 10/253 (3%)
Query: 44  NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G  T  +L+              F  G AA+A ++   +  G+ ++  +  
Sbjct: 51  NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 110
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
           Y  +    S++  K GV     +     ++   + P TK+V++ESP +   ++ D+  I 
Sbjct: 111 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 170
Query: 163 EMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG--- 217
               +    A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M G         
Sbjct: 171 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCW 230
Query: 218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKV 277
           E+L +  Y +    G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +V
Sbjct: 231 EQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARV 286
Query: 278 NYAGLPEHPGHEL 290
           N+  LP   GHE 
Sbjct: 287 NHPALPGSKGHEF 299

>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395

Iteration: 1
 Score =  107 bits (266), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 124/253 (49%), Gaps = 10/253 (3%)
Query: 44  NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G  T  +L+              F  G AA+A ++   +  G+ ++  +  
Sbjct: 51  NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 110
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
           Y  +    S++  K GV     +     ++   + P TK+V++ESP +   ++ D+  I 
Sbjct: 111 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 170
Query: 163 EMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG--- 217
               +    A++++DN+  + VL + L+ G D+ + +AT ++ GHSD M G         
Sbjct: 171 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVCNARCW 230
Query: 218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKV 277
           E+L +  Y +    G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +V
Sbjct: 231 EQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARV 286
Query: 278 NYAGLPEHPGHEL 290
           N+  LP   GHE 
Sbjct: 287 NHPALPGSKGHEF 299

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	1e-174
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	1e-160
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	1e-159
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	1e-154
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	1e-152
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	1e-152
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	1e-147
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	1e-141
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	1e-141
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	1e-140
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	1e-139
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	1e-135
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	1e-129
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	1e-120
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	2e-87
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	1e-83
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	3e-80
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	4e-79
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	2e-75
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	5e-67
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	5e-59
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	6e-59
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	4e-08
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	1e-07
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	5e-07
3pj0_A	359	LMO0305 protein; structural genomics, joint center	1e-06
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	2e-06
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	5e-06
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	5e-06
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	6e-06
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	1e-05
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	3e-05
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	3e-05
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	3e-05
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	4e-05
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	4e-05
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	6e-05
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	6e-05
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	8e-05
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	1e-04
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	1e-04
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	2e-04
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	2e-04
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	3e-04
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	4e-04
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	4e-04
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	4e-04
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	5e-04
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	5e-04
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	5e-04
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	6e-04
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	6e-04
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	7e-04
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	8e-04

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464

 Score =  489 bits (1260), Expect = e-174
 Identities = 246/294 (83%), Positives = 276/294 (93%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQ
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQ 372

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403

 Score =  452 bits (1165), Expect = e-160
 Identities = 128/293 (43%), Positives = 187/293 (63%), Gaps = 3/293 (1%)

Query: 5   EEPGVSTLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALES 62
                +T  ++   + +     A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE 
Sbjct: 15  HFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEK 74

Query: 63  LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122
            +A LD A   L F SG+AA   +THLL  G++I+  DD+YGGT+R   +V  + G+ + 
Sbjct: 75  AVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKIS 134

Query: 123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL-VDNSIMSP 181
            V+   +  + +AI P TKLVW+E+PTNP Q++ DI   A + H HG ++L VDN+ MSP
Sbjct: 135 FVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSP 194

Query: 182 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 241
              RPL LGADI M+SATK++ GHSDV+ G+++V  E L   L FLQN+ G+  +P DC+
Sbjct: 195 YFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCY 254

Query: 242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           +C RG+KT+ +R+EK   N   +A+FL S+P V+KV Y GLP HP HEL   Q
Sbjct: 255 LCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQ 307

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393

 Score =  448 bits (1156), Expect = e-159
 Identities = 126/299 (42%), Positives = 180/299 (60%), Gaps = 7/299 (2%)

Query: 2   SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDAL 60
           +++E    +T  ++     D +G++  P+  + TFKQ S A   G Y+Y+RS NP R+ L
Sbjct: 1   TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           E  +A L+ A   L F+SG A  A +   L  G   V+  D+YGGT R  ++V    GV 
Sbjct: 61  ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA----LLLVDN 176
               N   L+++   I   TKLVW+E+PTNP  ++ DI+K+A++   H A    +L+VDN
Sbjct: 121 TSFTND-LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           + +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPS 239

Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP-RVKKVNYAGLPEHPGHELHYSQ 294
           PFD W+  RG+KT+ LRV +   +A KIAEFLA+    V  VNY GL  HP +++   Q
Sbjct: 240 PFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQ 298

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386

 Score =  434 bits (1118), Expect = e-154
 Identities = 110/289 (38%), Positives = 168/289 (58%), Gaps = 2/289 (0%)

Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAK 66
             +T+ +      D  YG +  P++ ++T+      E   +DY+R GNPTRD ++  LA+
Sbjct: 4   KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAE 63

Query: 67  LDKADRALCFTSGMAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN 125
           L+    A+   +GM+A+  VT + L  G+ +VA  D YGG+ RL   +  +    V  V+
Sbjct: 64  LEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123

Query: 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR 185
             D   + +A+    KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  
Sbjct: 124 QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN 183

Query: 186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245
           PL LGAD+V+HS TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LR
Sbjct: 184 PLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR 243

Query: 246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           G++T+  R+E  Q NAQ I ++L + P VKK+ +  LPE+ GHE+   Q
Sbjct: 244 GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQ 292

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400

 Score =  431 bits (1110), Expect = e-152
 Identities = 129/294 (43%), Positives = 183/294 (62%), Gaps = 3/294 (1%)

Query: 4   EEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALES 62
           +    ++TL ++     DP  GA+  P+Y T+T+ Q S  E+  ++Y+R+ NPTR A E 
Sbjct: 15  DRALSLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYER 74

Query: 63  LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVV 121
            +A L+   RA  F SGMAA + V  LL  G  +VA DDLYGGT RL  RV  +T G+  
Sbjct: 75  CVAALEGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDF 134

Query: 122 KRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP 181
             V+  D     +AI   TK+VW+E+PTNP  ++ DI  IA +A  HG L +VDN+  SP
Sbjct: 135 SFVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASP 194

Query: 182 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK-GERLAKELYFLQNAEGSGLAPFDC 240
           +L RPL LGAD+V+HSATK++ GHSD++ G+  V     LA+++ FLQN+ G    PFD 
Sbjct: 195 MLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDS 254

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           ++ LRG+KT+ LR+    +NA  +A++L +HP ++KV Y GL  HP H L   Q
Sbjct: 255 FLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQ 308

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392

 Score =  430 bits (1107), Expect = e-152
 Identities = 129/294 (43%), Positives = 176/294 (59%), Gaps = 3/294 (1%)

Query: 4   EEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDALE 61
               G++T  ++     DP  GA++ P+Y ++TF Q       G Y+Y R+GNPTR ALE
Sbjct: 13  HRFAGLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALE 72

Query: 62  SLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           + LA ++ A     F+SGMAA       +L  G+ +V  DD YGGT RL+ +V     V 
Sbjct: 73  AALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
              V   DLD V +AI P T+L+WVE+PTNP   I DI  IA++     A +LVDN+  S
Sbjct: 133 YTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFAS 192

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           P L +PL LGAD+V+HS TK+I GHSDV+ G L    E L +   FLQN  G+   PFD 
Sbjct: 193 PALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDA 252

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           ++ +RG+KT+ LR+++  +NA  +AEFLA HP +  V Y GLP HPGH +   Q
Sbjct: 253 YLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQ 306

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389

 Score =  418 bits (1076), Expect = e-147
 Identities = 104/284 (36%), Positives = 165/284 (58%), Gaps = 10/284 (3%)

Query: 21  DP-YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKAD 71
           D    + + P++QT+TF   S  +           + Y+R GNPT +  E ++  ++ A 
Sbjct: 16  DHVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAA 75

Query: 72  RALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD 130
            +  F SGM A  ++    L  G+ ++AGD LYG T  L +   P+ G+ V  ++T D++
Sbjct: 76  GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVE 135

Query: 131 EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG 190
           +V +A  P TK+V++ESP NP  ++ DI+ IA + H  GA L+VD +  SP   +PLELG
Sbjct: 136 KVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELG 195

Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM 250
           ADI +HS +K+I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+
Sbjct: 196 ADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTL 255

Query: 251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
            +R++   +N  K+A+FL  H ++ KVN+ GL   PGH++   Q
Sbjct: 256 PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQ 299

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398

 Score =  404 bits (1040), Expect = e-141
 Identities = 110/302 (36%), Positives = 176/302 (58%), Gaps = 11/302 (3%)

Query: 4   EEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGP--------YDYTRSGN 54
            + PG +T  ++   +     GAL  P+YQTATF  P+              + Y+R  N
Sbjct: 5   NKLPGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISN 64

Query: 55  PTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRV 113
           PT + LE+ +A L+  +  L   SGM A  + +  LL  G+E++ G+ LYG T   L   
Sbjct: 65  PTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHG 124

Query: 114 TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL 173
             + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++
Sbjct: 125 IGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVV 184

Query: 174 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEG 232
           VDN+  +P L RPLELGAD+V+HSATK+++GH D+ AG++      + +  L  L++  G
Sbjct: 185 VDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTG 244

Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           + L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304

Query: 293 SQ 294
            Q
Sbjct: 305 QQ 306

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404

 Score =  403 bits (1038), Expect = e-141
 Identities = 109/305 (35%), Positives = 180/305 (59%), Gaps = 12/305 (3%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP--------YDYTRS 52
           M+  E    +T  ++ + + D +GA   P+YQT+TF   +  + G         Y YTR 
Sbjct: 1   MA-HERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRL 59

Query: 53  GNPTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLS 111
           GNPT   LE  +A L+K +  +  +SGM A  A V  +L  G+ +++ + LYG T  L  
Sbjct: 60  GNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE 119

Query: 112 RVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGA 170
               K G+ V  +NT    EV   + P TK+V+ E+P NP  +I D+ ++ + AH+  G 
Sbjct: 120 HALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGV 179

Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN 229
           L++ DN+  SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L +  +  +++
Sbjct: 180 LVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKD 239

Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
             GS ++P D W+  RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G  +H GH+
Sbjct: 240 ITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHD 299

Query: 290 LHYSQ 294
           +   Q
Sbjct: 300 IAKKQ 304

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445

 Score =  402 bits (1036), Expect = e-140
 Identities = 94/304 (30%), Positives = 154/304 (50%), Gaps = 14/304 (4%)

Query: 4   EEEPGVSTLLMNFSNEFDP---YGALSTPLYQTATFKQPSATENGP--------YDYTRS 52
                  ++ ++            A++TP+  T+ +     +E           ++Y R 
Sbjct: 52  SFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRY 111

Query: 53  GNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS 111
           GNPT   LE  ++ L+ A+  L   SGM A    +  L+  G  IV   D Y  T   + 
Sbjct: 112 GNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIE 171

Query: 112 RVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
            + PK G+    ++  D+  +  A+      L + ESPTNP  +  DI  ++++ H  GA
Sbjct: 172 TILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGA 231

Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA 230
           L+ +D +  +P+  + L LGAD+V+HSATKF+ GH+DV+AG +     +L  E+  L + 
Sbjct: 232 LVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCI-SGPLKLVSEIRNLHHI 290

Query: 231 EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL 290
            G  L P   ++ +RG+KT+ LRV++Q   A ++AE L +HP+V+ V Y GL  HP H +
Sbjct: 291 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHI 350

Query: 291 HYSQ 294
              Q
Sbjct: 351 AKKQ 354

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score =  398 bits (1026), Expect = e-139
 Identities = 127/305 (41%), Positives = 184/305 (60%), Gaps = 11/305 (3%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGP--------YDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA +           Y YTR
Sbjct: 1   MSDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60

Query: 52  SGNPTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE  LA L++ +  L   SG++A    +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120

Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           S   PK G+ V+ V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GA
Sbjct: 121 SHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180

Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN 229
           LL+VDN+ MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +     L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240

Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
             G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300

Query: 290 LHYSQ 294
           L   Q
Sbjct: 301 LGQRQ 305

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414

 Score =  387 bits (997), Expect = e-135
 Identities = 96/283 (33%), Positives = 150/283 (53%), Gaps = 9/283 (3%)

Query: 21  DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADR 72
             +   +  +Y T+ +   SA         E   Y Y+R GNPT    E  L  ++ A  
Sbjct: 39  SGFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPA 98

Query: 73  ALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
           A    SGMAA   ++  LLG G+ +VA   L+G    + S + P+ GV    V+  DL +
Sbjct: 99  AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQ 158

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
              A+   T+ V+ E+P+NP Q + DI  + E+AHA GA +++DN   +P+L +   LG 
Sbjct: 159 WERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGV 218

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 251
           D+V++S TK I G   V+ G +    E +   +  L    G  ++ F+ W+ L+G++T+A
Sbjct: 219 DVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLA 278

Query: 252 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           +RV+    +AQ+IAEFL  HP V+ V Y  LP HP ++L   Q
Sbjct: 279 IRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQ 321

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415

 Score =  374 bits (962), Expect = e-129
 Identities = 76/302 (25%), Positives = 146/302 (48%), Gaps = 14/302 (4%)

Query: 6   EPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---------TENGPYDYTRSGNP 55
           +  + T L+N         GA+++ + + ++    S            NG   Y R G  
Sbjct: 23  DKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTL 82

Query: 56  TRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T  +L+  + +L+     + F  G AA+A ++   +  G+ ++  +  Y  +    S++ 
Sbjct: 83  THFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKIL 142

Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALL 172
            K GV     +     ++   + P TK+V++ESP +   ++ D+  I     +    A++
Sbjct: 143 SKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAII 202

Query: 173 LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG 232
           ++DN+  + VL + L+ G D+ + +ATK++ GHSD M G  AV   R  ++L       G
Sbjct: 203 MIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQLRENAYLMG 261

Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
             +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP   GHE   
Sbjct: 262 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK 321

Query: 293 SQ 294
             
Sbjct: 322 RD 323

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331

 Score =  348 bits (895), Expect = e-120
 Identities = 95/239 (39%), Positives = 146/239 (61%), Gaps = 3/239 (1%)

Query: 59  ALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE  +AKL+ A+      SGM A+ A+V   L  G+ +++ D LYG T  L      K 
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH-AHGALLLVDN 176
           GV V  ++      +   + P T++V+ E+P NP  ++ DI    + A      L++VDN
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGL 235
           +  SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++  + + +AK +   +++  G+ +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181

Query: 236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           +P D W+  RG  T+ +RV++  +NAQK+AEFL  H  VKKV Y GLP+HPGHE+   Q
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ 240

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430

 Score =  266 bits (683), Expect = 2e-87
 Identities = 100/322 (31%), Positives = 158/322 (49%), Gaps = 34/322 (10%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---------TENGPYDYT 50
                  G +T  ++        +GAL TP+Y  A F+  ++            G + Y+
Sbjct: 19  YFQGHMRGFTTRALHVPKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGRALG-HVYS 77

Query: 51  RSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRL 109
           RS NPT + LE  L  L  A   L   SGMAA++ A+  L   G+ +V  D L+G T  L
Sbjct: 78  RSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSL 137

Query: 110 LSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG 169
             +  P  G+ V+ V+  D   V  A    TKL+++E+ +NP+ Q+ D+  ++++ HA G
Sbjct: 138 FQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKG 197

Query: 170 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------------ 217
             L+VD ++  P L     LG DI + S+TKFI+G    + GVL   G            
Sbjct: 198 IPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAP 257

Query: 218 --ERLAKELY-------FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFL 268
              +     +         QN  G  L+P + ++   G++TMALR+E+   NAQ++A +L
Sbjct: 258 YYAKAGPMAFLYKARKEVFQN-LGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWL 316

Query: 269 ASHPRVKKVNYAGLPEHPGHEL 290
            S P+VK VN+  LP+ P + +
Sbjct: 317 LSIPQVKCVNHPSLPDSPFYAI 338

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412

 Score =  257 bits (658), Expect = 1e-83
 Identities = 98/308 (31%), Positives = 148/308 (48%), Gaps = 41/308 (13%)

Query: 21  DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADR 72
           DP+GA+  P+Y  A +   +            G Y Y R  +PT  ALE  L  L+ A  
Sbjct: 15  DPHGAVGLPIYAVAAYGFKTLEEGQERFATGEG-YVYARQKDPTAKALEERLKALEGALE 73

Query: 73  ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
           A+   SG AA   A+  LL  G+E+VA   L+G T  L  +V    GV V+ V+  + + 
Sbjct: 74  AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEA 132

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELG 190
           V  A+   T+ V+VE+  NP   + D+  +A +A   G  L+VDN+   +  L RPL  G
Sbjct: 133 VREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192

Query: 191 ADIVMHSATKFIAGHSDVMAGVL---------------------AVKGERLAKELY---- 225
           A +V+ S TK+ +GH  V+ G +                      +  E L    +    
Sbjct: 193 AHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252

Query: 226 ---FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 282
               L    G  L+PF+ ++  +G++T+ALRV +  + A+ +AE L  HP+VK + Y GL
Sbjct: 253 RTLGLSLC-GMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGL 311

Query: 283 PEHPGHEL 290
           PE P H  
Sbjct: 312 PEDPAHRN 319

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431

 Score =  248 bits (635), Expect = 3e-80
 Identities = 46/281 (16%), Positives = 87/281 (30%), Gaps = 22/281 (7%)

Query: 31  YQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL 89
           +               Y Y   G  T + + + +   +         SG  A++ A+  +
Sbjct: 44  FGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGI 103

Query: 90  LGTGEEIVAGDDLYGGTDRLLSRVTPK------------TGVVVKRVNTCDLDEVASAIG 137
           L  G+E++        T   +  V  K              V +      D + VA+AI 
Sbjct: 104 LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH 163

Query: 138 PWTKLVWVESP----TNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPLELG 190
             TK++ ++      T P   I  I+++           ++ VDN     +    P  +G
Sbjct: 164 SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVG 223

Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM 250
           AD++  S  K   G      G +  K +   +   +   + G G         L+ +   
Sbjct: 224 ADLMAGSLIKNPGGGIVKTGGYIVGKEQ-YVEACAYRLTSPGIGAEAGASLYSLQEMYQG 282

Query: 251 ALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHEL 290
                     A K A F A+   ++               +
Sbjct: 283 FFLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLI 323

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421

 Score =  245 bits (627), Expect = 4e-79
 Identities = 100/311 (32%), Positives = 142/311 (45%), Gaps = 46/311 (14%)

Query: 24  GALSTPLYQTATFKQPSA---------TENGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
            +   P+Y T ++   S           E G   Y+R  NPT D LE  LA L+    AL
Sbjct: 19  LSRQVPIYPTTSYVFKSPEHAANLFALKEFG-NIYSRIMNPTVDVLEKRLAALEGGKAAL 77

Query: 75  CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL-DEV 132
              SG AA   A+T L   G+ IV+  +LYGGT         + G+ V+  +  +  +E 
Sbjct: 78  ATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEF 137

Query: 133 ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGA 191
            +     T+  WVES  NP   I D+  +A+ A   G  L+VDN+  M   L RPL  GA
Sbjct: 138 LALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGA 197

Query: 192 DIVMHSATKFIAGHSDVMAGVL-------------------------AVKGERLAKELYF 226
            +V HS TK++ GH  V+AG +                             E    EL F
Sbjct: 198 ALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFG-ELAF 256

Query: 227 LQNA-------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNY 279
           +  A       +G  L PF+ W+ L G++T++LR E+  +N   +A +L   P+V  VNY
Sbjct: 257 IVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNY 316

Query: 280 AGLPEHPGHEL 290
            GLP HP H+ 
Sbjct: 317 PGLPHHPHHDR 327

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427

 Score =  236 bits (603), Expect = 2e-75
 Identities = 57/289 (19%), Positives = 100/289 (34%), Gaps = 28/289 (9%)

Query: 29  PLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVT 87
             +Q     +   T +  Y Y   G  + D + + +   + A     F +G  A+ AA+ 
Sbjct: 51  KAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALF 110

Query: 88  HLLGTGEEIVA--------GDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASA 135
             L   + +++          D+ G  D        + GV  K V+      D++ V   
Sbjct: 111 GNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEE 170

Query: 136 IGP--WTKLVWVESPTN----PRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSR-P 186
           +      KL+ ++  T        +I +I +I +         ++ VDN     V  + P
Sbjct: 171 LKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEP 230

Query: 187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG 246
            ++GADI+  S  K I G      G +A K E    +  F     G G      +  +R 
Sbjct: 231 TDVGADIIAGSLIKNIGGGIATTGGYIAGKEE-YVTQATFRVTVPGIGGECGSTFGVMRS 289

Query: 247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           +             A K A F A    +     AG    P +    + +
Sbjct: 290 LYEGLFMAPHVTIEAVKGAVFCARIMEL-----AGFDVLPKYNDKRTDI 333

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427

 Score =  214 bits (546), Expect = 5e-67
 Identities = 51/281 (18%), Positives = 101/281 (35%), Gaps = 32/281 (11%)

Query: 31  YQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHL 89
           +Q     +   T +  Y Y   G  + DA+ + +   + A     F +G  AL AA+   
Sbjct: 52  FQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGN 111

Query: 90  LGTGEEIVAG--------DDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAI 136
           L  G  +++          D+ G T+        + G+  K+V+       +L+E+   +
Sbjct: 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVL 171

Query: 137 GPWTKLVWVESPTN------PRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPL 187
                +  V    +          I DI+ I +         +  VDN     +    P 
Sbjct: 172 KEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT 231

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
           ++GAD++  S  K I G      G LA   +   ++  +     G G      +  +R +
Sbjct: 232 DVGADLIAGSLIKNIGGGIAPTGGYLAGTKD-CIEKTSYRLTVPGIGGECGSTFGVVRSM 290

Query: 248 KT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH 285
                +A  +  +   A K A   +    ++   +  +P++
Sbjct: 291 YQGLFLAPHISME---ALKGAILCSRI--MELAGFEVMPKY 326

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score =  191 bits (488), Expect = 5e-59
 Identities = 51/261 (19%), Positives = 90/261 (34%), Gaps = 22/261 (8%)

Query: 48  DYTRSGNPTR--DALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGG 105
            Y  S       +         D+ D+ + F    +A+ A    L   + I    +L G 
Sbjct: 52  TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGH 111

Query: 106 TDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN-PRQQICDIRKIAEM 164
                S       V  K   +  + E+ + I   T ++   S  +    ++ + +K+   
Sbjct: 112 PSIERS----CKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINT 167

Query: 165 AHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219
           A    A++ VD++  + V         L+LGAD+V+ S  K + G      G+LA K E 
Sbjct: 168 AKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP---RGGLLAGKKE- 223

Query: 220 LAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQDNAQKIA----EFLASHPR- 273
           L  ++Y      G    P       R +K   L R+ K  + A+       E L    + 
Sbjct: 224 LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA 283

Query: 274 VKKVNYAGLPEHPGHELHYSQ 294
           +           P   +    
Sbjct: 284 IDDNINIVYERTPTGFVIKRV 304

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409

 Score =  193 bits (491), Expect = 6e-59
 Identities = 51/268 (19%), Positives = 88/268 (32%), Gaps = 34/268 (12%)

Query: 46  PYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVA-GDDLY 103
            Y Y   G  T + + + + K + A       SG  A+   +  +L   +E++      Y
Sbjct: 53  GYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPY 112

Query: 104 GGTDRL------LSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESP---- 148
              + +               +    V        D   +A  + P TK++ ++      
Sbjct: 113 DTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYA 172

Query: 149 TNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGH 205
             P   I  I+++           ++ VDN     V    P E+GADI+  S  K   G 
Sbjct: 173 DRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGG 232

Query: 206 SDVMAGVLAVKGERLAKELYFLQNAEG----SGLAPFDCWICLRGVKTMALRVEKQQDNA 261
                G +A K   L     +     G    +G + +      +G   +A  V  Q   A
Sbjct: 233 LAKTGGYIAGKEA-LVDLCGYRLTTPGIGREAGASLYSLLEMYQGF-FLAPHVTAQ---A 287

Query: 262 QKIAEFLASHPRVKKVNYAGLPEHPGHE 289
            K A F A       +   G+   P  +
Sbjct: 288 IKGARFTA-----AMLAEFGVEADPVWD 310

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 49/308 (15%), Positives = 87/308 (28%), Gaps = 75/308 (24%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRS----GNP-------TR----DALESLLAKL 67
           Y  L +P  +T   +QPS      Y   R      N        +R      L   L +L
Sbjct: 91  YKFLMSP-IKTEQ-RQPSMMTR-MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 68  DKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDL--YGGTDRL--------LSRVTPKT 117
             A   L    G+          G+G+  VA D    Y    ++        L       
Sbjct: 148 RPAKNVLID--GVL---------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 118 GVVVKRVNTC-DLDEVASAIGPWTKLVWVESPTNPRQQICDI-----RKIAEMAHAHGAL 171
            V+         +D        WT     +  +N + +I  I     R +    + +  L
Sbjct: 197 TVLEMLQKLLYQID------PNWTSRS--DHSSNIKLRIHSIQAELRRLLKSKPYEN-CL 247

Query: 172 LLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE 231
           L++ N + +        L   I++ +  K +    D ++         L      L   E
Sbjct: 248 LVLLN-VQNAKAWNAFNLSCKILLTTRFKQVT---DFLSAA-TTTHISLDHHSMTLTPDE 302

Query: 232 GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 291
              L     ++     +   L  E               +PR   +    + +      +
Sbjct: 303 VKSL--LLKYL---DCRPQDLPRE-----VLTT------NPRRLSIIAESIRDGLATWDN 346

Query: 292 YSQVLSDN 299
           +  V  D 
Sbjct: 347 WKHVNCDK 354

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 33/240 (13%), Positives = 69/240 (28%), Gaps = 66/240 (27%)

Query: 42  TENGPYDYTRSGNPTRDALESLLAK----LDKADRALCFTSGMAALAAVTHLLGTGEEIV 97
            E G + Y       +D L           D  D        + +   + H++ + + + 
Sbjct: 9   FETGEHQYQ-----YKDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 98  AGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD 157
                  GT RL   +  K   +V++     ++EV      +           P      
Sbjct: 63  -------GTLRLFWTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPS----M 107

Query: 158 IRKIAEMAHAHGALLLVDNSIMSPV-LSRP----------LEL--GADIVMHSATKFIAG 204
           + ++          L  DN + +   +SR           LEL    ++++        G
Sbjct: 108 MTRMYIEQRDR---LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-------G 157

Query: 205 HSDVMAG----VLAVKGERLAKELYFLQNAEGSGLAPFDC-WICLRGVKTMALRVEKQQD 259
               + G     +A+             + +      F   W+ L+   +    +E  Q 
Sbjct: 158 ----VLGSGKTWVALDV---------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 128 DLDEVASAIGPWTK-----LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
             +  A  I    K     L  +  P      + D++KIA++   +   LLV+ +     
Sbjct: 131 TPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR 190

Query: 183 LSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
           +  P+   E+GAD ++ S  K +A  +    GV+ +K E  
Sbjct: 191 M--PVSLKEIGADFIVGSGHKSMA--ASGPIGVMGMKEEWA 227

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 116 KTGVVVK--RVNT----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG 169
           + G  VK   V+         +  S I   T+LV V S +     + D+R + ++ H  G
Sbjct: 136 RYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVG 195

Query: 170 ALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222
           AL++VD+S  +P   R L   E  AD+V  +A  +       +  ++      +  
Sbjct: 196 ALVVVDHSAAAP--YRLLDIRETDADVVTVNAHAWGGPP---IGAMVFRDPSVMNS 246

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} Length = 357

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 16/133 (12%)

Query: 55  PTRDALESLLAKLDKADRALCFTSG-MAALAAV-THLLGTGEEIVAGDDLY------GGT 106
              +  E   A +   D A+ F SG MA   A+      T    VA   L          
Sbjct: 47  AIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDG 106

Query: 107 DRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC----DIRKIA 162
            + L  +      V        LDE+ +   P    + +E P      +     ++  I+
Sbjct: 107 LKELHPIETIL--VGAADRLMTLDEIKAL--PDIACLLLELPQREIGGVAPAFSELETIS 162

Query: 163 EMAHAHGALLLVD 175
                 G  L +D
Sbjct: 163 RYCRERGIRLHLD 175

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} Length = 359

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 15/133 (11%)

Query: 55  PTRDALESLLAKLDKADRALCFTSG-MAALAAV-THLLGTGEEIVAGDDLY------GGT 106
              +  E+ +AK+     A+ F SG MA   A+           VA   L          
Sbjct: 48  AVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDG 107

Query: 107 DRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC----DIRKIA 162
            + L ++TP    +        +D++ S   P    V +E P            ++ KI+
Sbjct: 108 LKELQQITPLL--LGTANQLLTIDDIKSLREP-VSSVLIELPQREIGGQLPAFEELEKIS 164

Query: 163 EMAHAHGALLLVD 175
           E  H  G  L +D
Sbjct: 165 EYCHEQGISLHLD 177

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* Length = 347

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 18/137 (13%)

Query: 55  PTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDD----LY-GGTDR 108
           PT + LE L A+    + AL   SG M    ++      G+E++   D     Y  G   
Sbjct: 38  PTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMA 97

Query: 109 LLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQQIC----DI 158
           +LS V P    V  +    D D+V  AI       P T L+ +E+  N          +I
Sbjct: 98  VLSGVMPHP--VPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENI 155

Query: 159 RKIAEMAHAHGALLLVD 175
           ++I  +A  HG  + +D
Sbjct: 156 KEICTIAKEHGINVHID 172

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406

 Score = 46.7 bits (112), Expect = 5e-06
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 116 KTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           + G  ++ +      T  L+ + +     T+L+ +   +N       + ++  +AH HGA
Sbjct: 136 RVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGA 195

Query: 171 LLLVD 175
            +LVD
Sbjct: 196 KVLVD 200

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score = 46.7 bits (110), Expect = 5e-06
 Identities = 40/287 (13%), Positives = 80/287 (27%), Gaps = 51/287 (17%)

Query: 48  DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDD------ 101
           D   +G+     LE  + +L      +    G  A   ++ L     + VAG+       
Sbjct: 68  DEAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTR 127

Query: 102 ----LYGGTDR-LLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPR 152
                 G     ++       G+ +      DL ++   I          + +    N  
Sbjct: 128 YHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLA 187

Query: 153 Q----QICDIRKIAEMAHAHGALLLVDNSIMS------------------PVLSRPLELG 190
                 + ++R + E+  AHG  +  D +                       +   +   
Sbjct: 188 GGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSY 247

Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-----SGLAPFDCWICLR 245
           AD    S  K    +   + G L +  + +      L           GLA  D      
Sbjct: 248 ADGCTMSGKKDCLVN---IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAM-- 302

Query: 246 GVKTMALRVEKQQD-NAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 291
               + LR   Q +    ++ +      ++K      +    GH + 
Sbjct: 303 ---AIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVF 346

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420

 Score = 46.3 bits (111), Expect = 6e-06
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 116 KTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           KTG V+K V      + DL+   + +   TKLV V   +N    +    +IA++AH  GA
Sbjct: 141 KTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGA 200

Query: 171 LLLVD 175
            +LVD
Sbjct: 201 KVLVD 205

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 18/121 (14%)

Query: 116 KTGVVVKRV-------NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH 168
           + G+  +                +A+ +GP T+LV +        Q+  + +I  +   H
Sbjct: 124 RFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRH 183

Query: 169 G----ALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA 221
                  +LVD +  +  L  PL    L  D    +  K+ AG + V  G L + G+ L 
Sbjct: 184 QGNYPVRVLVDGAQSAGSL--PLDFSRLEVDYYAFTGHKWFAGPAGV--GGLYIHGDCLG 239

Query: 222 K 222
           +
Sbjct: 240 E 240

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 45/142 (31%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
             LE  +++    D  + ++S   A       LLG  + I++        D L       
Sbjct: 91  KELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIIS--------DELNHASIID 142

Query: 110 ---LSRVTPKTGVVVKRVNTCDLDEV------ASAIGPWTKLVWVESPTNPRQQ------ 154
              L +          R     + ++      A   G   KL+  +              
Sbjct: 143 GIRLCKAQ------RYRYKNNAMGDLEAKLKEADEKGARFKLIATDG-------VFSMDG 189

Query: 155 -ICDIRKIAEMAHAHGALLLVD 175
            I D++ I ++A  + AL++VD
Sbjct: 190 IIADLKSICDLADKYNALVMVD 211

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 31/277 (11%), Positives = 70/277 (25%), Gaps = 49/277 (17%)

Query: 61  ESLLAKLDKADRALCFTSG--MAALAAVTHLLGTGEEIVA----------GDDLYGGTDR 108
           E   A++  ADR+     G   +    +   +   + +V           G  L G    
Sbjct: 211 EKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPV 270

Query: 109 LLSRVTPKTGVVVKRVNTC-DLDEVASAI----------GPWTKLVWVESPTNPRQQICD 157
            +     + G++          + +   I          G       V + T       +
Sbjct: 271 YMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYN 329

Query: 158 IRKIAEMAHAHGALLLVDNS-----IMSPVL---------SRPLELGADIVMHSATKFIA 203
            ++  ++       L  D +       +P+                      HS  K + 
Sbjct: 330 AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN 389

Query: 204 GHSDVMAGVLAVKG-------ERLAKELYFLQNAEGSG--LAPFDCWICLRGVKTMALRV 254
             S   A  + V+         R  +               A  D  + +    +     
Sbjct: 390 ALS--QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLT 447

Query: 255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 291
           ++  D A    + +A   +    + +   +    E+ 
Sbjct: 448 QEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVV 484

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 34/119 (28%)

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDN-------- 176
           D   ++  +   TKLV+V SP NP   + D+   +++ ++   +G ++  D         
Sbjct: 157 DWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFD 216

Query: 177 -----SIMSPVLSRPLELGAD----IVMHSATK----------FIAGHSDVMAGVLAVK 216
                      L    +LG      ++  S +K          F+AG ++++   L  +
Sbjct: 217 GNKPLGC----LQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYR 271

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 56  TRDALESL--LAKLDKADRALCFT-SGMAAL-AAVTHLLGTGEEIVAGDD-LYGGTDRLL 110
             +  + +   AK  +  +A+  T S   ++ A V +     ++++  D   +G   R  
Sbjct: 54  MLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFG--HRF- 110

Query: 111 SRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWV---ESPTNPRQQICDIRKIA 162
            ++     +    +          +++          + V   E+ T       D   I 
Sbjct: 111 VQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLY---DTMMIG 167

Query: 163 EMAHAHGALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAG 204
           E    +    + D   +S  L+ P    E GAD+++  + K +A 
Sbjct: 168 EFCKKNNMFFVCDC--VSAFLADPFNMNECGADVMITGSQKVLAC 210

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 22/136 (16%), Positives = 37/136 (27%), Gaps = 38/136 (27%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
             +E  LAK    D  L   SG  A +  +  +      +          D         
Sbjct: 107 PMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYI--------DFFAHMSLWE 158

Query: 110 ---LSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ-------ICDIR 159
               +             N   L  +    GP   ++ V+S              I  + 
Sbjct: 159 GARYANAQAH---PFMHNNCDHLRMLIQRHGP--GIIVVDS-------IYSTLGTIAPLA 206

Query: 160 KIAEMAHAHGALLLVD 175
           ++  ++   G  LLVD
Sbjct: 207 ELVNISKEFGCALLVD 222

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-----IMSPVLSRPLELGAD 192
              KLV +  P     +  ++ ++ +  H     +L+D +      +       L   AD
Sbjct: 145 DGHKLVVLTYPN-YYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQAD 203

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223
            V+ S  K +   +  M  VL +      +E
Sbjct: 204 YVVQSFHKTLPALT--MGSVLYIHKNAPYRE 232

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 31/139 (22%), Positives = 48/139 (34%), Gaps = 42/139 (30%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
            ALE  LA+     RAL F SG  A  A +  ++   + I A        DRL       
Sbjct: 87  QALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAA--------DRLSHASLLE 138

Query: 110 ---LSRVTPKTGVVVKRVNTCDLDEVAS---AIGPWTKLVWVESPTNPRQQ-------IC 156
              LS         ++R    D+  +A    +  P  ++V  E                 
Sbjct: 139 AASLSPSQ------LRRFAHNDVTHLARLLASPCPGQQMVVTEG-------VFSMDGDSA 185

Query: 157 DIRKIAEMAHAHGALLLVD 175
            + +I ++   H   L+VD
Sbjct: 186 PLAEIQQVTQQHNGWLMVD 204

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Length = 401

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 45/142 (31%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
             LE  LA     + A+ ++S   A       LLG  + I++        D L       
Sbjct: 93  KELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIIS--------DALNHASIID 144

Query: 110 ---LSRVTPKTGVVVKRVNTCDLD------EVASAIGPWTKLVWVESPTNPRQQ------ 154
              L +          R    D+       + A   G    L+  +              
Sbjct: 145 GVRLCKAK------RYRYANNDMQELEARLKEAREAGARHVLIATDG-------VFSMDG 191

Query: 155 -ICDIRKIAEMAHAHGALLLVD 175
            I +++ + ++A  + AL++VD
Sbjct: 192 VIANLKGVCDLADKYDALVMVD 213

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 15/159 (9%)

Query: 128 DLDEVASAI-----GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
            ++++ +AI           V       P +   DI +IA++   +    +++ +     
Sbjct: 215 PVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQN 274

Query: 183 ------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
                 L +  +   D V+ S+ K     + +  G++        KE+        S   
Sbjct: 275 NYYLEKLKKAFKYRVDAVVSSSDKN--LLTPIGGGLVYSTDAEFIKEISLSYPGRASATP 332

Query: 237 PFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPR 273
             +  + L   G K     V+ Q+++ + + E L    +
Sbjct: 333 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSK 371

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 29/133 (21%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
             LE  L+     + A+ F++G  + L  ++ L+G  + I+         D         
Sbjct: 91  VELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILL--------DERDHASIID 142

Query: 110 ---LSRVTPKTGVVVKRVNTCDLDE----VASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
              LS         V +    ++++    ++       KL+  +   +    I ++ ++ 
Sbjct: 143 GSRLSFSK------VIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELT 196

Query: 163 EMAHAHGALLLVD 175
            +A+   A ++VD
Sbjct: 197 SIANEFDAAVMVD 209

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* Length = 438

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 154 QICDIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIV 194
            + D+   AE AH  GAL +     +S  VL  P   GADI 
Sbjct: 210 ALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIA 251

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 33/118 (27%)

Query: 112 RVTPKTGVVVKRV------NTCDLDEVASAIGPWTKLVWVESPTNP------RQQICDIR 159
           R   ++G  ++R            D +  A+ P    +++ +P NP      R     ++
Sbjct: 113 RALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERP---LLQ 169

Query: 160 KIAEMAHAHGALLLVD----------NSIMSPVLSRP-LELGADIVMHSATKF--IAG 204
            IA+   +    L++D             +  +   P +      V+ S TKF  I G
Sbjct: 170 AIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHI-----WVLRSLTKFYAIPG 222

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 24/120 (20%)

Query: 77  TSG--MAALAAVTHLLGTGEEIVAGD---DLY-------GGTDRLLSRVTPKTGVVVKRV 124
           T+G     L+ +  LL  G+E++  +   D Y       GG    +    PK        
Sbjct: 124 TTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTR 183

Query: 125 N---TCDLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVD 175
               T D ++   AI   TK V + +P NP      R+   ++  +  +   H  +++ D
Sbjct: 184 GEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTRE---ELTTLGNICVKHNVVIISD 240

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 29/161 (18%)

Query: 41  ATENGPYDYTR-SGNPT-RDALESLLAKLDK----ADRALCFTSG--MAALAAVTHLLGT 92
           A  +    YTR  G+P    AL  L  K+ +     +  +    G   +   ++  L+  
Sbjct: 49  AFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDP 108

Query: 93  GEEIVAGD---DLY-------GGTDRLLSRVTPKTGVVVKRVN--TCDLDEVASAIGPWT 140
           G+E++      D Y       G     +   +  T  +    +  T D  E+ S     T
Sbjct: 109 GDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKT 168

Query: 141 KLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVD 175
           K + + +P NP      RQ   +++ IA++   H  L + D
Sbjct: 169 KAIILNTPHNPLGKVYTRQ---ELQVIADLCVKHDTLCISD 206

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 16/109 (14%)

Query: 78  SGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDE 131
           SG   + A++ + +  G +++       G       V    G     +          ++
Sbjct: 79  SGTGIMEASIRNGVSKGGKVLVTIIGAFGK--RYKEVVESNGRKAVVLEYEPGKAVKPED 136

Query: 132 VASAI--GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVD 175
           +  A+   P  + V +   E+ T        + ++A++A  H  L+ VD
Sbjct: 137 LDDALRKNPDVEAVTITYNETSTGVLN---PLPELAKVAKEHDKLVFVD 182

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 33/117 (28%)

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDN-------- 176
            L+E          LV + SP NP  +   +       ++A  H  +L+ D         
Sbjct: 146 SLNE---KELQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYEN 202

Query: 177 ----SIMSPVLSRPLELGAD---IVMHSATK----------FIAGHSDVMAGVLAVK 216
               S++           A    +V+HS +K          FIAG S ++    A +
Sbjct: 203 TPPPSLLEA--CMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFR 257

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 16/109 (14%)

Query: 78  SGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDE 131
             +  L AA   L+   + ++       G          +    +  +        D   
Sbjct: 67  EPVLGLEAAAASLISPDDVVLNLASGVYGK--GFGYWAKRYSPHLLEIEVPYNEAIDPQA 124

Query: 132 VASAI--GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVD 175
           VA  +   P   +V V   ++P+        I  I  +  AHGA L+VD
Sbjct: 125 VADMLKAHPEITVVSVCHHDTPSGTIN---PIDAIGALVSAHGAYLIVD 170

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* Length = 474

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 157 DIRKIAEMAHAHGALLLVD----NSIMSPVLSRPLELGADIVMH 196
            I +I+ +    G  L  D    N+IM    +RP ++G D V+H
Sbjct: 221 RILEISRLCKEAGVQLYYDGANLNAIMG--WARPGDMGFD-VVH 261

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 37/136 (27%)

Query: 59  ALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL-------- 109
            +E  L        A+ F++G MA L  ++ L G GE ++         D          
Sbjct: 113 EVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVIL--------DADSHASIYDG 164

Query: 110 --LSRVTPKTGVVVKRVNTCDLDEVASAIGPW-TKLVWVESPTNPRQQ-------ICDIR 159
                      V  +  +  DLD+    +     KLV +E               I  ++
Sbjct: 165 CQQGNAEI---VRFRHNSVEDLDKRLGRLPKEPAKLVVLEG-------VYSMLGDIAPLK 214

Query: 160 KIAEMAHAHGALLLVD 175
           ++  +A  HGA++LVD
Sbjct: 215 EMVAVAKKHGAMVLVD 230

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 16/71 (22%)

Query: 118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEM 164
           G  V             DL+++   I P TK++ + +  NP      R     + ++ E+
Sbjct: 126 GAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRT---YLEELVEI 182

Query: 165 AHAHGALLLVD 175
           A   GA +L D
Sbjct: 183 ASEVGAYILSD 193

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 22/118 (18%)

Query: 77  TSG--MAALAAVTHLLGTGEEIVAGD---DLY-------GGTDRLLSRVTPKTGVVVKRV 124
           T G   A  A +   +  G+E++  +   D Y       GG  R +     KTG  +   
Sbjct: 107 TVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSA 166

Query: 125 N-TCDLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVD 175
           +   D +E+ +     TK++ + +P NP      R    ++  +A +      L + D
Sbjct: 167 DWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRA---ELEVVANLCKKWNVLCVSD 221

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 15/108 (13%)

Query: 78  SGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDE 131
           S  A + A +++LL  G+ ++      G        ++ + G  V+ +         L+ 
Sbjct: 77  SAHAGMEAMLSNLLEEGDRVLIAV--NGIWAERAVEMSERYGADVRTIEGPPDRPFSLET 134

Query: 132 VASAI-GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVD 175
           +A AI     K +++   +S +   Q    +  + ++ H H  LL+VD
Sbjct: 135 LARAIELHQPKCLFLTHGDSSSGLLQ---PLEGVGQICHQHDCLLIVD 179

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 15/108 (13%)

Query: 78  SGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDE 131
           +  A + A +  ++   ++++     YG    LL+ +  + G  V  +        D ++
Sbjct: 70  TSRAGIEAVLASVIEPEDDVLIPI--YGRFGYLLTEIAERYGANVHMLECEWGTVFDPED 127

Query: 132 VASAI-GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVD 175
           +   I     K+V +   E+ T        ++ I E      AL +VD
Sbjct: 128 IIREIKKVKPKIVAMVHGETSTGRIH---PLKAIGEACRTEDALFIVD 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	100.0
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	100.0
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	100.0
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	100.0
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	100.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	100.0
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	100.0
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	100.0
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	100.0
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	100.0
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	100.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	100.0
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	100.0
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	100.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	100.0
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	100.0
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.98
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.97
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.97
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.97
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.96
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.95
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.95
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.95
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.95
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.95
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.95
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.95
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.95
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.95
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.95
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.95
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.95
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.95
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.94
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.94
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.94
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.94
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.94
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.94
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.94
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.94
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.94
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.94
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.94
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.94
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.94
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.94
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.94
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.94
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.94
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.94
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.94
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.94
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.94
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.94
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.94
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.94
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.94
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.93
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.93
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.93
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.93
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.93
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.93
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.93
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.93
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.93
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.93
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.93
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.93
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.93
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.92
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.92
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.92
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.92
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.92
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.92
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.92
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.92
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.92
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.92
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.92
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.92
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.92
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.92
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.92
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.92
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.92
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.92
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.92
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.92
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.92
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.92
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.92
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.92
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.92
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.92
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.92
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.92
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.92
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.92
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.91
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.91
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.91
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.91
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.91
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.91
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.91
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.91
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.91
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.91
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.91
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.91
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.91
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.91
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.91
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.91
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.91
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.91
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.91
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.91
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.9
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.9
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.9
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.9
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.9
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.9
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.9
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.9
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.9
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.9
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.9
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.83
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.9
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.9
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.9
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.9
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.9
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.89
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.89
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.89
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.89
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.89
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.89
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.89
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.88
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.88
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.88
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.88
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.88
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.88
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.88
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.88
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.88
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.88
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.88
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.88
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.88
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.88
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.88
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.87
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.87
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.87
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.87
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.87
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.87
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.87
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.87
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.86
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.86
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.86
1svv_A	359	Threonine aldolase; structural genomics, structura	99.86
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.86
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.86
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.85
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.85
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.85
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.85
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.85
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.85
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.85
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.85
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.85
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.85
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.85
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.85
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.85
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.85
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.85
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.85
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.84
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.84
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.84
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.84
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.84
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.84
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.84
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.84
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.84
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.84
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.83
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.83
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.83
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.83
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.83
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.83
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.83
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.83
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.83
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.83
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.83
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.83
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.82
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.81
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.8
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.8
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.68
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.8
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.79
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.77
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.77
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.77
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.75
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.73
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.72
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.71
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.7
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.69
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.68
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.66
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.63
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.61
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.56
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.53
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.44
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	85.74

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.4e-41  Score=302.70  Aligned_cols=295  Identities=33%  Similarity=0.513  Sum_probs=258.9

Q ss_pred             CCCccceeeecCCCCCCCCccccCeeecceeecCCC--------CCCCCccccCCCCchHHHHHHHHHhhcCCCceEEec
Q 022194            6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (301)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~   77 (301)
                      +.+++|..++.+...+..|...+|++.+.++..+..        .....+.|+++++|.++++++++++++|.+++++++
T Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~~~~~  103 (414)
T 3ndn_A           24 GVSQATVGVRGGMLRSGFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFATA  103 (414)
T ss_dssp             TCCHHHHHHHTTCCCCTTCBSSCCBCCCSBBCCSSHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CCCccceeeecCCCCCCCCCcCCCcccCCceecCChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCCCcEEEEC
Confidence            345567778777555668999999999999887654        334568899999999999999999999999999999


Q ss_pred             chHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        78 sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                      ||++|+. ++..++++||+|+++++.|+++...+...++..|++++.++.+|++++++++++++++|++++|+||+|.+.
T Consensus       104 sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~t~~v~le~p~NptG~~~  183 (414)
T 3ndn_A          104 SGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFETPSNPMQSLV  183 (414)
T ss_dssp             SHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEEEESSCTTTCCCC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCccc
Confidence            9999986 677789999999999999999987666666779999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCC
Q 022194          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (301)
Q Consensus       157 ~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
                      ++++|+++|+++|+++|+|++|+.+....+...|+|+++.|+||++++++.+++|+++++++.+.+.+.......+..++
T Consensus       184 ~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~  263 (414)
T 3ndn_A          184 DIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMS  263 (414)
T ss_dssp             CHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCC
T ss_pred             cHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999887777778899999999999996544478999999876555455555566677889


Q ss_pred             HHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +..++.++.+++.+..+.+++.++++++.++|+++|.+..+.+|++++.|+|.+++++.++.||
T Consensus       264 ~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~  327 (414)
T 3ndn_A          264 AFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGT  327 (414)
T ss_dssp             HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCce
Confidence            9999999999999999999999999999999999999999999999999999999999987765

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=100.00  E-value=3.3e-41  Score=300.58  Aligned_cols=293  Identities=43%  Similarity=0.699  Sum_probs=262.4

Q ss_pred             CccceeeecCCCCC-CCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHH
Q 022194            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV   86 (301)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~   86 (301)
                      +++|..++.+...+ ..|...+|++.+.+|..+.......+.|+++++|.++++++.++++.+.+++++++||++|+.++
T Consensus        19 ~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~~   98 (400)
T 3nmy_A           19 SLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAALEGGTRAFAFASGMAATSTV   98 (400)
T ss_dssp             CHHHHHHHTTCCCCTTTCBSSCCBCCCSBBBCSBTTBSSSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred             CcchheeeCCCCCCCCCCCcCCCccccceeeccCccccCCcccccCCCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHHH
Confidence            45677777764444 48999999999999988766666778899999999999999999999999999999999999778


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhh-cccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~-~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~  165 (301)
                      +.++++||+|+++++.|++....+... ++..|++++.++.+|++++++++++++++|++++|+||+|.+.|+++|+++|
T Consensus        99 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la  178 (400)
T 3nmy_A           99 MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIA  178 (400)
T ss_dssp             HTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHH
Confidence            889999999999999999887666555 6677999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceee-EEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHH
Q 022194          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (301)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (301)
                      +++|+++|+|++|+.+....+...++|+++.|++|+++|++..++| +++.+++.+.+.+.......+..+++..++.++
T Consensus       179 ~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l  258 (400)
T 3nmy_A          179 RKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLAL  258 (400)
T ss_dssp             HHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHH
T ss_pred             HHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            9999999999999987777788889999999999999887666678 777777788888877777888889999999999


Q ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       245 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ++++.+..+.++..++++.+.++|+++|.+..+.+|+++++|.|.+++++.++.|+
T Consensus       259 ~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~  314 (400)
T 3nmy_A          259 RGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGG  314 (400)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS
T ss_pred             HhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCc
Confidence            99999999999999999999999999999999999999999999999999977765

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=100.00  E-value=2.1e-40  Score=297.42  Aligned_cols=294  Identities=34%  Similarity=0.481  Sum_probs=227.0

Q ss_pred             CCCccceeeecCCCCC-CCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEe
Q 022194            6 EPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (301)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~   76 (301)
                      +..++|..++.+...+ ..|...+|++.+.+|..+...        ....+.|+++++|.++++++++++++|.+.++++
T Consensus        24 m~~~~t~~~h~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~  103 (430)
T 3ri6_A           24 MRGFTTRALHVPKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGVLAL  103 (430)
T ss_dssp             -CCHHHHHHCCC--------------------------------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             cCCcchhheeCCCCCCCCCCCcCCCcccccccccCCHHHHHHHhhcccCCccccCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4456677787763333 489999999999998775432        2246788999999999999999999999999999


Q ss_pred             cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccc
Q 022194           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        77 ~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~  155 (301)
                      +||++|+. ++.+++++||+|+++++.|+++...+...++..|++++.++.+|++++++++++++++|++++|+||+|.+
T Consensus       104 ~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~t~~v~~e~p~NptG~~  183 (430)
T 3ri6_A          104 GSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQV  183 (430)
T ss_dssp             SCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCCee
Confidence            99999985 66778999999999999999998776667788999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchh-H--------------
Q 022194          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-L--------------  220 (301)
Q Consensus       156 ~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~-~--------------  220 (301)
                      .|+++|+++|+++|+++|+|++|+.+....+...|+|+++.|++|+++|++..++|+++.+.+. +              
T Consensus       184 ~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g  263 (430)
T 3ri6_A          184 ADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAG  263 (430)
T ss_dssp             CCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHG
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhc
Confidence            9999999999999999999999999888888888999999999999987765667888854321 1              


Q ss_pred             ----HHHH-HHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhh
Q 022194          221 ----AKEL-YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV  295 (301)
Q Consensus       221 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~  295 (301)
                          .... .......+..+++..++.++++++.+..+.++..++++.+.++|+++|.|..|.+|+++++|+|.+++++.
T Consensus       264 ~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~  343 (430)
T 3ri6_A          264 PMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQF  343 (430)
T ss_dssp             GGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhC
Confidence                1221 12334567778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCC
Q 022194          296 LSDNG  300 (301)
Q Consensus       296 ~~~~~  300 (301)
                       +.||
T Consensus       344 -g~Gg  347 (430)
T 3ri6_A          344 -RYAG  347 (430)
T ss_dssp             -SSCC
T ss_pred             -CCCc
Confidence             6666

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=100.00  E-value=2.4e-39  Score=288.30  Aligned_cols=293  Identities=44%  Similarity=0.737  Sum_probs=259.2

Q ss_pred             CccceeeecCCCCC-CCCccccCeeecceeecCCCCCC-CCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-
Q 022194            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATEN-GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (301)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~~~-~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-   84 (301)
                      +++|..++.+...+ ..|...+|++.+.+|..+..... ..+.|++++++.++++++.++++++.+++++++||++|+. 
T Consensus        17 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~   96 (392)
T 3qhx_A           17 GLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALAAVEDAAFGRAFSSGMAAADC   96 (392)
T ss_dssp             CHHHHHHHSSCCCCTTTCBSSCCBCCCSBBCCSSTTCCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHH
T ss_pred             CcchhheeCCCCCCCCCCCccCCcccCcceEecCcccccCCccccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHH
Confidence            35667777664444 37899999999999877654332 3688999899999999999999999999999999999986 


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l  164 (301)
                      ++..++++||+|+++++.|+++...+...++..|+++..++.+|++++++++++++++|++++|+||+|.+.|+++|+++
T Consensus        97 al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l  176 (392)
T 3qhx_A           97 ALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQL  176 (392)
T ss_dssp             HHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             HHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHH
Confidence            56668999999999999999988777677788999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHH
Q 022194          165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (301)
Q Consensus       165 ~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (301)
                      |+++|+++|+|++|+.+....+...++|+++.|+||++++++++++|+++.+++.+.+.+.......+...++..++.++
T Consensus       177 a~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  256 (392)
T 3qhx_A          177 GADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTM  256 (392)
T ss_dssp             HHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             HHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999999999988777788889999999999999766557899999987778787777777788888999999999


Q ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       245 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ..++.+..+.++..++++++.++|++++.+..+.+|+++..|.|.+++++.++.||
T Consensus       257 ~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~  312 (392)
T 3qhx_A          257 RGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGG  312 (392)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCce
Confidence            99999988999999999999999999999999999999999999999999877665

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=100.00  E-value=3.8e-39  Score=288.32  Aligned_cols=292  Identities=25%  Similarity=0.443  Sum_probs=250.8

Q ss_pred             CccceeeecCCCCC-CCCccccCeeecceeecCCCC--------C-CCCccccCCCCchHHHHHHHHHhhcCCCceEEec
Q 022194            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (301)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~--------~-~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~   77 (301)
                      +++|..++-+...+ ..|...+|++.+.+|..+...        . ...+.|+++++|.++++++.+++++|.++.++++
T Consensus        25 ~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~s  104 (415)
T 2fq6_A           25 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFP  104 (415)
T ss_dssp             CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CcCceeEeCCCCCCCCCCCEeCCeecccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeC
Confidence            35577777663333 379999999999998876531        1 3468899999999999999999999999899999


Q ss_pred             chHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        78 sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                      ||++|+. ++..++++||+|+++++.|+++...+...++..|+++.+++.+|++++++++++++++|++++|+||+|.+.
T Consensus       105 sGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~tklV~~e~~~NptG~v~  184 (415)
T 2fq6_A          105 CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVH  184 (415)
T ss_dssp             SHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTTEEEEEEESSCTTTCCCC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccCCcEEEEECCCCCCCEee
Confidence            9999986 666688999999999999999987776677888999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHH--cCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCC
Q 022194          157 DIRKIAEMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (301)
Q Consensus       157 ~l~~l~~l~~~--~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  234 (301)
                      |+++|+++|++  +|+++|+|++|+.+....+...++|+++.|+||+++++++.++|+++.+++ +.+.+.......+..
T Consensus       185 dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~-~~~~l~~~~~~~G~~  263 (415)
T 2fq6_A          185 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYLMGQM  263 (415)
T ss_dssp             CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHH-HHHHHHHHHHhcCCC
Confidence            99999999999  999999999999877667777899999999999997766666799998764 556666555556777


Q ss_pred             CCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++..++.++++++.+..+.++..+++..+.++|+++|.+..+.+|+++..|.+.+++++.++.||
T Consensus       264 ~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~  329 (415)
T 2fq6_A          264 VDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSG  329 (415)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCS
T ss_pred             CCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCce
Confidence            788888888888888888999999999999999999999988999999999999998887665544

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=100.00  E-value=3.5e-38  Score=281.70  Aligned_cols=293  Identities=44%  Similarity=0.744  Sum_probs=243.3

Q ss_pred             CccceeeecCCCCC-CC-CccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHH
Q 022194            8 GVSTLLMNFSNEFD-PY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (301)
Q Consensus         8 ~~~~~~~~~~~~~~-~~-g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~   85 (301)
                      +++|..++-+...+ .. |...+|++.++++..+.......+.|+++++|...++++.++++++.++.+++++|++|+.+
T Consensus        18 ~~~t~~~h~g~~~~~~~~~~~~~pi~~stt~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~   97 (403)
T 3cog_A           18 HFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVT   97 (403)
T ss_dssp             THHHHHHHTTCCGGGSTTCBSSCCBCCCSCBCCC--------------CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHH
T ss_pred             CcccEEEeCCCCCCcCCCCCccCCeeccceeecCCccccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHH
Confidence            34567777663323 35 89999999999987766544556788888889999999999999999899999999999864


Q ss_pred             HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 022194           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (301)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~  165 (301)
                      ++.++++||+|++++|.|+++...+...++..|++++.++.+|++++++++++++++|++++|+||+|.+.|+++|+++|
T Consensus        98 ~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la  177 (403)
T 3cog_A           98 ITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIV  177 (403)
T ss_dssp             HHTTSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHH
Confidence            44488999999999999998876666677889999999999999999999999999999999999999999999999999


Q ss_pred             HHcC-CEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHH
Q 022194          166 HAHG-ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (301)
Q Consensus       166 ~~~~-~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (301)
                      +++| +++|+|++|+.+....+...++|+++.|+||+++|++++++|+++++++.+.+.+.......+...++..++++.
T Consensus       178 ~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~  257 (403)
T 3cog_A          178 HKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCN  257 (403)
T ss_dssp             TSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             HHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            9999 999999999988776667788999999999999888877899999976677777776666677778888888888


Q ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       245 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ++++.+..+.++..+++..+.+++++++.+..+.+++|+..|++.+..++.++.||
T Consensus       258 ~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~  313 (403)
T 3cog_A          258 RGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTG  313 (403)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCS
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCce
Confidence            88999888899999999999999999999999999999999999988877654443

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=100.00  E-value=8.5e-38  Score=281.34  Aligned_cols=290  Identities=32%  Similarity=0.581  Sum_probs=247.9

Q ss_pred             cceeeecCCCCC---CCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecc
Q 022194           10 STLLMNFSNEFD---PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (301)
Q Consensus        10 ~~~~~~~~~~~~---~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~s   78 (301)
                      +|..++-+...+   ..|...+|++.+.+|..+...        ....+.|++++++.++++++++++++|.++.+++++
T Consensus        58 ~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~lA~l~g~~~~v~~~s  137 (445)
T 1qgn_A           58 GSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMAS  137 (445)
T ss_dssp             HHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTCSEEEEESC
T ss_pred             ccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccccCCccccCCCChHHHHHHHHHHHHhCCCcEEEeCC
Confidence            455566553333   479999999999998876532        224577888888999999999999999999999999


Q ss_pred             hHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCc-eEEEEeCCCCCccccc
Q 022194           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT-KLVWVESPTNPRQQIC  156 (301)
Q Consensus        79 G~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~-~~v~i~~~~np~G~~~  156 (301)
                      |++|+. ++..++++||+|+++++.|+++...+...++..|++++.++.+|++++++++++++ ++|++++|+||+|.+.
T Consensus       138 G~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~  217 (445)
T 1qgn_A          138 GMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCV  217 (445)
T ss_dssp             HHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEeCCCCCCCccc
Confidence            999986 56668999999999999999887666556788899999999999999999998888 9999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCC
Q 022194          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (301)
Q Consensus       157 ~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
                      |+++|+++|+++|+++|+|++|+.+....+...++|+++.|+||+++|++.+++|++++++ .+.+.+.......+..++
T Consensus       218 dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~-~l~~~l~~~~~~~g~~~~  296 (445)
T 1qgn_A          218 DIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPL-KLVSEIRNLHHILGGALN  296 (445)
T ss_dssp             CHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH-HHHHHHHHHHHHHCCCCC
T ss_pred             CHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECH-HHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999988777777789999999999999765556689999875 455666666666677788


Q ss_pred             HHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +..++.++++++.+..+.+++.++++++.++|+++|.+..+.+|+++++|+|.+++++.++.||
T Consensus       297 ~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~  360 (445)
T 1qgn_A          297 PNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGG  360 (445)
T ss_dssp             HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCS
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCc
Confidence            8888888889999988899999999999999999999888999999999999999988776554

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=100.00  E-value=1.3e-37  Score=281.95  Aligned_cols=292  Identities=83%  Similarity=1.281  Sum_probs=249.8

Q ss_pred             CccceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHH
Q 022194            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (301)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~   87 (301)
                      ..++.+++++...++.+..++|++.+.++..+.......+.|++.|++.++++++++++++|.++.+++++|++|+.+++
T Consensus        86 ~~~~~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l  165 (464)
T 1ibj_A           86 SVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVT  165 (464)
T ss_dssp             CHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHH
T ss_pred             CcCCeEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHH
Confidence            44577888884336788889999988876544444556778887788899999999999999999999999999987666


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA  167 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~  167 (301)
                      .++++||+|++++|.|+++...+...++..|.+++.++.+|++++++++++++++|++++|+||+|.+.|+++|+++|++
T Consensus       166 ~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~  245 (464)
T 1ibj_A          166 HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHA  245 (464)
T ss_dssp             TTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHT
T ss_pred             HHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHH
Confidence            78999999999999999997666667788899999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc
Q 022194          168 HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (301)
Q Consensus       168 ~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (301)
                      +|+++|+||+|..+....+...++|+++.|+||+++|++|+++|+++++++.+.+.+.......+...++..++++..++
T Consensus       246 ~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al  325 (464)
T 1ibj_A          246 QGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI  325 (464)
T ss_dssp             TTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhch
Confidence            99999999999887665566678999999999999888898999999987677777766666567777888888888888


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCC
Q 022194          248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDN  299 (301)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~  299 (301)
                      +.+..+.++..+++..+.+++++++.+..+.+++|...|.+.+.....++.|
T Consensus       326 ~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g  377 (464)
T 1ibj_A          326 KTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAG  377 (464)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCc
Confidence            8888788888888889999999998888999999998888888776655444

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=100.00  E-value=4.3e-37  Score=273.64  Aligned_cols=294  Identities=36%  Similarity=0.622  Sum_probs=250.2

Q ss_pred             CCCccceeeecCCCCCCCCccccCeeecceeecCCC--------CCCCCccccCCCCchHHHHHHHHHhhcCCCceEEec
Q 022194            6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (301)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~   77 (301)
                      ..+++|..++-+ ..+..|...+|++.+.+|..+..        .....+.|++++++..+++++.+++++|.++.++++
T Consensus         3 ~~~~~t~~~~~~-~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~~   81 (389)
T 3acz_A            3 AQDITTTLLHPK-GDHVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFG   81 (389)
T ss_dssp             CCCHHHHHHSCS-SCCSTTBSSCCBCCCSBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CCCcceeEEecC-CCCCCCCCCCCcccCCceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEeC
Confidence            345567777766 44558999999999999876552        123467788888899999999999999999999999


Q ss_pred             chHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        78 sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                      ||++|+. ++..++++||+|+++++.|+++...+...++..|++++.++..|++++++++++++++|++++|+||+|.+.
T Consensus        82 sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~  161 (389)
T 3acz_A           82 SGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYLESPANPTCKVS  161 (389)
T ss_dssp             SHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTTEEEEEEESSCTTTCCCC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCeec
Confidence            9999986 555678999999999999999876665557788999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCC
Q 022194          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (301)
Q Consensus       157 ~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
                      |+++|+++|+++|+++|+|++|+.+....+...++|+++.|+||+++++++..+|+++++++.+.+.+.......+...+
T Consensus       162 ~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~  241 (389)
T 3acz_A          162 DIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMA  241 (389)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCC
T ss_pred             CHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999887666677889999999999997776543599998873566666665555677788


Q ss_pred             HHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +..+++++.+++.+..+.++..++++.+.++|++++.+..+.+|+++..|.+.++.++.++.||
T Consensus       242 ~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~  305 (389)
T 3acz_A          242 PMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGS  305 (389)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCS
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCe
Confidence            8888888888988888889999999999999999999999999999999999998877655443

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=6.4e-36  Score=266.26  Aligned_cols=288  Identities=41%  Similarity=0.654  Sum_probs=239.9

Q ss_pred             CccceeeecCCCCCCCCccccCeeecceeecCCCCCC-CCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHH
Q 022194            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATEN-GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV   86 (301)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~   86 (301)
                      +.+|..++-+...+..|...+|++.+.+|..+..... ..+.|+++.++..+++++.++++++.++.+++++|++|+.++
T Consensus         7 ~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~a   86 (393)
T 1n8p_A            7 KFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATI   86 (393)
T ss_dssp             CHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHH
T ss_pred             CccceEEecCCCccCCCCcCCCcccccceeeccccccccCcceecCCChhHHHHHHHHHHHhCCCcEEEECChHHHHHHH
Confidence            4456777765333467999999999999987654322 457788888888999999999999998999999999999644


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~  166 (301)
                      +.++++||+|+++.+.|++....+...++..|++++.++.+| +++++++++++++|++++|+||+|.+.|+++|+++|+
T Consensus        87 l~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~  165 (393)
T 1n8p_A           87 LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIK  165 (393)
T ss_dssp             HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHH
Confidence            338899999999999999876655557788899999999888 9999999989999999999999999999999999999


Q ss_pred             Hc----CCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCcee-eEEEEcchhHHHHHHHhhhhcCCCCCHHhHH
Q 022194          167 AH----GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAEGSGLAPFDCW  241 (301)
Q Consensus       167 ~~----~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (301)
                      ++    |+++|+|++|+.+....+...++|+++.|+||+++ ++|.+. |+++++++.+.+.+.......+...++..++
T Consensus       166 ~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g-~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~  244 (393)
T 1n8p_A          166 KHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYIN-GHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAW  244 (393)
T ss_dssp             HHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred             HhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECccccc-CCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            99    99999999999877666666789999999999995 556555 9988865667676666555566677788888


Q ss_pred             HHHcccccHHHHHHHHHHHHHHHHHHHHhCCC-cceEecCCCCCCcchHHHHhhhcc
Q 022194          242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPR-VKKVNYAGLPEHPGHELHYSQVLS  297 (301)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-v~~v~~p~~~~~~~~~~~~~~~~~  297 (301)
                      ++..+++.+..+.++..++++.+.++|++++. +..+.+|++...+.+.++.++.++
T Consensus       245 ~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~  301 (393)
T 1n8p_A          245 LTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRD  301 (393)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGG
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCC
Confidence            77888888888889999999999999999887 877889999988888888776544

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=100.00  E-value=9.9e-36  Score=265.66  Aligned_cols=293  Identities=37%  Similarity=0.616  Sum_probs=225.1

Q ss_pred             CCccceeeecCCCC-CCCCccccCeeecceeecCCCCC--------CCCccccCCCCchHHHHHHHHHhhcCCCceEEec
Q 022194            7 PGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (301)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~g~~~~p~~~~~~~~~~~~~~--------~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~   77 (301)
                      ++.+|..++-+... +..|...+|++.+.++..+....        ...+.|++++++..+++++.+++++|.++.++++
T Consensus         8 ~~~~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i~~~   87 (398)
T 1gc0_A            8 PGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLALA   87 (398)
T ss_dssp             CCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CCcCceeEeCCCCCCCCCCCcCCCccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEEEEC
Confidence            45567777765322 24789999999999887655321        2345677777888999999999999999999999


Q ss_pred             chHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        78 sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                      +|++|+. ++..++++||+|+++++.|+++...+...+...|++++.++..|++++++++++++++|++++|+||+|.+.
T Consensus        88 sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~  167 (398)
T 1gc0_A           88 SGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMA  167 (398)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCcccc
Confidence            9999986 666678999999999999999987665666788999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh-cCCCC
Q 022194          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGSGL  235 (301)
Q Consensus       157 ~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~  235 (301)
                      |+++|+++|+++|+++|+|++|+.+....+...++|+++.|+||+++++++..+|+++++++.+.+.+...... .+.+.
T Consensus       168 ~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~  247 (398)
T 1gc0_A          168 DIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVL  247 (398)
T ss_dssp             CHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCC
T ss_pred             cHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCC
Confidence            99999999999999999999999877666667789999999999997766544599988766554455555555 56778


Q ss_pred             CHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCC
Q 022194          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDN  299 (301)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~  299 (301)
                      ++..++++.++++.+..+.++..++++.+.++|++++.+..+.+|+++..|.+.++.++.++.|
T Consensus       248 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~  311 (398)
T 1gc0_A          248 SPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPG  311 (398)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCT
T ss_pred             CHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCc
Confidence            8888888888888888899999999999999999999998899999998888888776654444

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=100.00  E-value=2.3e-35  Score=263.63  Aligned_cols=291  Identities=35%  Similarity=0.621  Sum_probs=241.3

Q ss_pred             ccceeeecCCCCCCCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchH
Q 022194            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM   80 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~   80 (301)
                      ++|..++-+...+..+...+|++.+.++..+...        ....+.|++.|.+..+++++.+++++|.++.+++++|+
T Consensus         8 ~~t~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i~~~~g~   87 (404)
T 1e5e_A            8 PATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGM   87 (404)
T ss_dssp             HHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHH
T ss_pred             ccceeeecCCCCCCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEEEeCChH
Confidence            3466666552223468888999998887765531        23467788878888999999999999999999999999


Q ss_pred             HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 022194           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (301)
Q Consensus        81 ~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~  159 (301)
                      +|+. ++..++++||+|++++|.|+++...+...++..|++++.++.+|++++++++++++++|++++|+||||.+.|++
T Consensus        88 ~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~  167 (404)
T 1e5e_A           88 GAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDME  167 (404)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEEECCCCCCCcccCHH
Confidence            9986 566688999999999999999887665567888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-cCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCcee-eEEEEcchhHHHHHHHhhhhc-CCCCC
Q 022194          160 KIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAE-GSGLA  236 (301)
Q Consensus       160 ~l~~l~~~-~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~~  236 (301)
                      +|+++|++ +|+++|+|++|+.+.+..+...++|+++.|+||++++++ .+. |+++++++.+.+.+....... +...+
T Consensus       168 ~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g-~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~  246 (404)
T 1e5e_A          168 RVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHT-DVVAGLICGKADLLQQIRMVGIKDITGSVIS  246 (404)
T ss_dssp             HHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSS-CCCCEEEEECHHHHHHHHHTCCCCCCCCCCC
T ss_pred             HHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCC-CCeEEEEEECHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999 999999999999887666666789999999999997654 454 999988655543555554444 55678


Q ss_pred             HHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +..++++..+++.+..+.++..++++.+.+++++++.+..+.+|++...|++.+..++.++.|+
T Consensus       247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~  310 (404)
T 1e5e_A          247 PHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGS  310 (404)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCS
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCce
Confidence            8888888888888888888999999999999999988888999999998998888877554443

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=4.5e-34  Score=253.93  Aligned_cols=288  Identities=38%  Similarity=0.587  Sum_probs=239.5

Q ss_pred             ccceeeecCCC-CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-HH
Q 022194            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (301)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~   86 (301)
                      .+|..++.+.. .+..|...+|++.+.++..+.......+.|+++.++...++++.++++++.++.+++++|++|+. ++
T Consensus         5 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~   84 (386)
T 1cs1_A            5 QATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVT   84 (386)
T ss_dssp             HHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHH
T ss_pred             cceeEEecCCCccccCCCCCCCccccceeeccccCCCCCcceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHH
Confidence            34666666532 23579999999999998875544445678888888889999999999999888999999999986 55


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~  166 (301)
                      ..++++||+|++++|.|++....+...++..|.++..++.+|++++++++++++++|++++|+||+|.+.|+++|+++|+
T Consensus        85 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  164 (386)
T 1cs1_A           85 TVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAR  164 (386)
T ss_dssp             HHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHH
Confidence            56789999999999999987766655667889999999999999999999889999999999999999999999999999


Q ss_pred             HcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcc
Q 022194          167 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (301)
Q Consensus       167 ~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (301)
                      ++|+++|+||+|+.+....+...++|+++.|+||+++++++..+|+++++++.+.+.+.......+...++..++++..+
T Consensus       165 ~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  244 (386)
T 1cs1_A          165 EVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRG  244 (386)
T ss_dssp             HTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHH
T ss_pred             HcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence            99999999999998876656667899999999999977665445999988756666666655555666778777777777


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhc
Q 022194          247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVL  296 (301)
Q Consensus       247 l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~  296 (301)
                      ++.+.++.++..++.+.+.+.|++++.+..+.+|++...|...+.....+
T Consensus       245 l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~  294 (386)
T 1cs1_A          245 LRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK  294 (386)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcC
Confidence            88888888899999999999999998888888899888887777665433

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=100.00  E-value=5.4e-34  Score=255.53  Aligned_cols=290  Identities=34%  Similarity=0.528  Sum_probs=232.9

Q ss_pred             cceeeecCCCCCCCCccccCeeecceeecCCCC-------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHH
Q 022194           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSAT-------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (301)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~-------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~a   82 (301)
                      +|..++-+...+..|...+|++.+.++..+...       ....+.|++.+.+..++++++++++++.+++++++||++|
T Consensus         4 ~t~~~~~~~~~~~~~~~~~pi~~s~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a   83 (412)
T 2cb1_A            4 TTLAVLAGLPEDPHGAVGLPIYAVAAYGFKTLEEGQERFATGEGYVYARQKDPTAKALEERLKALEGALEAVVLASGQAA   83 (412)
T ss_dssp             HHHHHHTTCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHHHCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHH
T ss_pred             cceeeecCCCcCCCCCcCCCccccceeecCChHHHHHHhccccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHH
Confidence            355555542233478889999998777654321       1345778887778899999999999999989999999999


Q ss_pred             HH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHH
Q 022194           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (301)
Q Consensus        83 i~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l  161 (301)
                      +. ++..++++||+|+++++.|+++...+...++..|.+++.++.+ ++++++++++++++|++++|+||+|.+.|+++|
T Consensus        84 ~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i  162 (412)
T 2cb1_A           84 TFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE-PEAVREALSAKTRAVFVETVANPALLVPDLEAL  162 (412)
T ss_dssp             HHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS-HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred             HHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-HHHHHHHhccCCeEEEEeCCCCCCcccccHHHH
Confidence            86 5666789999999999999988766656678889999999875 999999999999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCcCCc-cccCccCCCCcEEEecccccccCCCCceeeEEEEcch----------------------
Q 022194          162 AEMAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE----------------------  218 (301)
Q Consensus       162 ~~l~~~~~~~li~D~~~~~~-~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~----------------------  218 (301)
                      +++|+++|+++|+|++|+.+ ....+...++|+++.|+||++++|++..+|+++.+++                      
T Consensus       163 ~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (412)
T 2cb1_A          163 ATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEA  242 (412)
T ss_dssp             HHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHH
T ss_pred             HHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhc
Confidence            99999999999999999887 5455666789999999999997766534555555433                      


Q ss_pred             ----hHHHHHHHhh-hhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHh
Q 022194          219 ----RLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  293 (301)
Q Consensus       219 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~  293 (301)
                          .+.+.++... ...+..+++..+++....++.+.++.++..++++++.+.|++++++..+.+|++..+|+|.++++
T Consensus       243 ~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~  322 (412)
T 2cb1_A          243 LRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARK  322 (412)
T ss_dssp             HGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHH
Confidence                2233333322 33445667888888888888888888888899999999999999998899999999999999999


Q ss_pred             hhccCCC
Q 022194          294 QVLSDNG  300 (301)
Q Consensus       294 ~~~~~~~  300 (301)
                      ++++.||
T Consensus       323 ~~~~~~~  329 (412)
T 2cb1_A          323 YLASGGP  329 (412)
T ss_dssp             HCSSSCS
T ss_pred             hCCCCce
Confidence            8875554

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=100.00  E-value=6e-34  Score=254.14  Aligned_cols=291  Identities=42%  Similarity=0.706  Sum_probs=234.9

Q ss_pred             ccceeeecCCCCC-CCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecch
Q 022194            9 VSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (301)
Q Consensus         9 ~~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG   79 (301)
                      ..|..++-+...+ ..+....|++.+.++..+...        ....+.|+++..+..+++++++++++|.++.+++++|
T Consensus         9 ~~t~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG   88 (398)
T 2rfv_A            9 FNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASG   88 (398)
T ss_dssp             HHHHHHHTTCCCCTTTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred             CceeEeecCCcCccCCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEECCH
Confidence            4466666552222 356777788887776655421        2345677776777899999999999999999999999


Q ss_pred             HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccH
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l  158 (301)
                      ++|+. ++..++++||+|++++|.|+++...+...++..|.+++.++.+|++++++++++++++|++++|+||+|.+.|+
T Consensus        89 ~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l  168 (398)
T 2rfv_A           89 ISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDI  168 (398)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSBTTTTBCCCH
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCH
Confidence            99986 66667899999999999999998666555578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhc-CCCCCH
Q 022194          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-GSGLAP  237 (301)
Q Consensus       159 ~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~  237 (301)
                      ++|+++|+++|+++|+|++|+.+....+...++|+++.|+||++++|++..+|+++++++.+.+.+....... +.+.++
T Consensus       169 ~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (398)
T 2rfv_A          169 ETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSP  248 (398)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCH
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCH
Confidence            9999999999999999999998877666677899999999999977554334999988655443555555555 667788


Q ss_pred             HhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCC
Q 022194          238 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDN  299 (301)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~  299 (301)
                      ..++++..+++.+.++.++..++++.+.++|++++.+..+.+|+++..|...+.....++.|
T Consensus       249 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g  310 (398)
T 2rfv_A          249 FNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG  310 (398)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCC
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCc
Confidence            88888888888888888889999999999999999888899999988888887766544333

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=7e-34  Score=255.36  Aligned_cols=291  Identities=33%  Similarity=0.486  Sum_probs=234.7

Q ss_pred             cceeeecCCCCC-CCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchH
Q 022194           10 STLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM   80 (301)
Q Consensus        10 ~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~   80 (301)
                      +|..++-+...+ ..|...+|++.+.++..+...        ....+.|++++++..+++++.++++++.++.+++++|+
T Consensus         4 ~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~sGt   83 (421)
T 2ctz_A            4 ETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASGH   83 (421)
T ss_dssp             HHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHH
T ss_pred             ceeeeeCCCCCCcCCCCccCCeeccceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCCceEEecCHH
Confidence            355555542233 479999999999998765521        23457788888888999999999999998889999999


Q ss_pred             HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEe-cCCCHHHHHhhcCCCceEEEEeCCCCCccccccH
Q 022194           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (301)
Q Consensus        81 ~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~-~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l  158 (301)
                      +|+. ++..++++||+|+++.+.|+++...+...++..|++++.+ +.+|++++++++++++++|++++++||+|.+.|+
T Consensus        84 ~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l  163 (421)
T 2ctz_A           84 AAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDL  163 (421)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccCCeEEEEECCCCCCCcccCH
Confidence            9986 5566789999999999999998876655567889999999 8889999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCccccCccCCCCcEEEecccccccCCCCceeeEEEEc-chhH----HHHHH-------
Q 022194          159 RKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK-GERL----AKELY-------  225 (301)
Q Consensus       159 ~~l~~l~~~~~~~li~D~~~-~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~-~~~~----~~~~~-------  225 (301)
                      ++|+++|+++|+++|+|++| +.+....+...++|+++.|+||++++|++..+|+++.+ +..+    .+.+.       
T Consensus       164 ~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~  243 (421)
T 2ctz_A          164 EALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH  243 (421)
T ss_dssp             HHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGT
T ss_pred             HHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhh
Confidence            99999999999999999999 77765566677899999999999977654345555542 2111    01110       


Q ss_pred             ------------------H-hhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCc
Q 022194          226 ------------------F-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  286 (301)
Q Consensus       226 ------------------~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~  286 (301)
                                        . .....+..+++..+++...+++.+.++.+++.++++++.++|+++|.+..+.+|+++.+|
T Consensus       244 g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~  323 (421)
T 2ctz_A          244 GLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHP  323 (421)
T ss_dssp             TBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCT
T ss_pred             hhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCC
Confidence                              0 112345677888888888899998888898899999999999999999888899999999


Q ss_pred             chHHHHhhh-ccCCC
Q 022194          287 GHELHYSQV-LSDNG  300 (301)
Q Consensus       287 ~~~~~~~~~-~~~~~  300 (301)
                      .|.+++++. ++.||
T Consensus       324 ~~~~~~~~~~~~~g~  338 (421)
T 2ctz_A          324 HHDRAQKYFKGKPGA  338 (421)
T ss_dssp             THHHHHHHHTTCCCS
T ss_pred             CHHHHHHhccCCCce
Confidence            999998887 44443

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.98  E-value=1.2e-30  Score=227.07  Aligned_cols=238  Identities=40%  Similarity=0.672  Sum_probs=198.0

Q ss_pred             HHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC
Q 022194           59 ALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG  137 (301)
Q Consensus        59 ~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~  137 (301)
                      ++++.+++++|.++.+++++|++|+. ++..++++||+|++++|.|+++...+...++..|.+++.++..|++++++.++
T Consensus         2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~   81 (331)
T 1pff_A            2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence            68899999999999999999999986 55557899999999999999987665544566899999999889999999999


Q ss_pred             CCceEEEEeCCCCCccccccHHHHHHHHHH-cCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEc
Q 022194          138 PWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (301)
Q Consensus       138 ~~~~~v~i~~~~np~G~~~~l~~l~~l~~~-~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~  216 (301)
                      +++++|++++|+||+|.+.|+++|.++|++ +|+++|+|++|+.+....+...++|+++.|+||++++|++..+|+++++
T Consensus        82 ~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~~  161 (331)
T 1pff_A           82 PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSR  161 (331)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEEC
T ss_pred             CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEEeC
Confidence            899999999999999999999999999999 9999999999997766555567899999999999976654227899888


Q ss_pred             chhHHHHHHHhhhh-cCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhh
Q 022194          217 GERLAKELYFLQNA-EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV  295 (301)
Q Consensus       217 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~  295 (301)
                      ++.+.+.+...... .+...++..++.+..+++.+..+.++..++.+.+.+.+++++.+....++++...|...+..+..
T Consensus       162 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~  241 (331)
T 1pff_A          162 ADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM  241 (331)
T ss_dssp             HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC
Confidence            64666666555544 45567777777776777777777888889999999999998888888889988877777766544


Q ss_pred             c
Q 022194          296 L  296 (301)
Q Consensus       296 ~  296 (301)
                      +
T Consensus       242 ~  242 (331)
T 1pff_A          242 K  242 (331)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.97  E-value=1.2e-29  Score=226.57  Aligned_cols=230  Identities=19%  Similarity=0.235  Sum_probs=188.8

Q ss_pred             chHHHHHHHHHhhcCCCceEE---ecchHHHHH-HHHhccCCCCeEEEcC-CCCccHHHHH-------hhhcccCCcEEE
Q 022194           55 PTRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLL-------SRVTPKTGVVVK  122 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~---~~sG~~ai~-~~~~~~~~g~~Vlv~~-~~y~~~~~~~-------~~~~~~~g~~~~  122 (301)
                      +.++++++.+++++|.+.+++   ++||++|+. ++.++++|||+|++++ +.|+++...+       ...++..|++++
T Consensus        73 ~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~  152 (427)
T 3i16_A           73 IGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYK  152 (427)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEE
T ss_pred             HHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEE
Confidence            448999999999999998888   899999985 6777899999999998 9999887555       145667899999


Q ss_pred             EecC-----CCHHHHHhhcC--CCceEEEEeC----CCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCcc-ccCccC
Q 022194          123 RVNT-----CDLDEVASAIG--PWTKLVWVES----PTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPLE  188 (301)
Q Consensus       123 ~~~~-----~d~~~l~~~l~--~~~~~v~i~~----~~np~G~~~~l~~l~~l~~~--~~~~li~D~~~~~~~-~~~~~~  188 (301)
                      .++.     .|+++++++++  +++++|++++    |+||+|.+.++++|+++|++  +|+++++|++|+.+. ...+..
T Consensus       153 ~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~  232 (427)
T 3i16_A          153 QVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD  232 (427)
T ss_dssp             ECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGG
T ss_pred             EecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccc
Confidence            9997     48999999998  7899999999    99999999999999999999  999999999999887 456777


Q ss_pred             CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh--hcCCCCCH-Hh-HHHHHcccccHHHHHHHHHHHHHHH
Q 022194          189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAP-FD-CWICLRGVKTMALRVEKQQDNAQKI  264 (301)
Q Consensus       189 ~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~l  264 (301)
                      .++|++++|+||+++|+...++|+++++ +.+.+++.....  ..+..+++ .. ++.++++++.+..+++++.+++.++
T Consensus       233 ~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r~~~~~~~a~~l  311 (427)
T 3i16_A          233 VGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHISMEALKGAILC  311 (427)
T ss_dssp             GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEecCcccCCCCCCceEEEEEEC-HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999976544568999887 456665555322  22222333 33 6778888888899999999999999


Q ss_pred             HHHHHhCCCcceEecCCCCCCcchH
Q 022194          265 AEFLASHPRVKKVNYAGLPEHPGHE  289 (301)
Q Consensus       265 ~~~l~~~~~v~~v~~p~~~~~~~~~  289 (301)
                      .++|++++.  .+ +|+ .++|.|.
T Consensus       312 a~~L~~~g~--~V-~p~-~~~~~~~  332 (427)
T 3i16_A          312 SRIMELAGF--EV-MPK-YDEKRSD  332 (427)
T ss_dssp             HHHHHHTTC--EE-ESC-TTSCCSS
T ss_pred             HHHHHhCCC--ee-cCC-CCCCCcc
Confidence            999999875  55 676 5555443

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.97  E-value=6.1e-29  Score=221.37  Aligned_cols=230  Identities=21%  Similarity=0.257  Sum_probs=186.6

Q ss_pred             CchHHHHHHHHHhhcCCCceEE---ecchHHHHH-HHHhccCCCCeEEEcC-CCCccHHHHHh------hhcccCCcEEE
Q 022194           54 NPTRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLLS------RVTPKTGVVVK  122 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~---~~sG~~ai~-~~~~~~~~g~~Vlv~~-~~y~~~~~~~~------~~~~~~g~~~~  122 (301)
                      .+.++++++.+++++|.+.+++   ++||++|+. ++.+++++||+|++++ +.|..+...+.      ..++..|++++
T Consensus        58 ~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~  137 (409)
T 3jzl_A           58 DEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYS  137 (409)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEE
T ss_pred             hhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEE
Confidence            3458999999999999998888   789999985 6677899999999998 99998875442      45677899999


Q ss_pred             EecC-----CCHHHHHhhcCCCceEEEEeC----CCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCcc-ccCccCCC
Q 022194          123 RVNT-----CDLDEVASAIGPWTKLVWVES----PTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPLELG  190 (301)
Q Consensus       123 ~~~~-----~d~~~l~~~l~~~~~~v~i~~----~~np~G~~~~l~~l~~l~~~--~~~~li~D~~~~~~~-~~~~~~~~  190 (301)
                      .++.     .|++++++++++++++|++++    |+||+|.+.|+++|+++|++  +|+++++|++|+.+. ...+...+
T Consensus       138 ~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g  217 (409)
T 3jzl_A          138 SVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVG  217 (409)
T ss_dssp             ECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGT
T ss_pred             EeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccccC
Confidence            9998     589999999999999999999    99999999999999999999  999999999999887 35677789


Q ss_pred             CcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcC----CCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHH
Q 022194          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG----SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  266 (301)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~  266 (301)
                      +|++++|+||+++|+...++|+++++ +.+.+.+.......+    .+......++++++++.+..+++++.+++.++.+
T Consensus       218 ~Div~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~~~r~~~~~~~a~~la~  296 (409)
T 3jzl_A          218 ADIIAGSLIKNPGGGLAKTGGYIAGK-EALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAIKGARFTAA  296 (409)
T ss_dssp             CSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEECccccCCccCCceEEEEEeC-HHHHHHHHHHhccccccccccccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999999976554567999887 556665554332211    2222222556778888888999999999999999


Q ss_pred             HHHhCCCcceEecCCCCCCcch
Q 022194          267 FLASHPRVKKVNYAGLPEHPGH  288 (301)
Q Consensus       267 ~l~~~~~v~~v~~p~~~~~~~~  288 (301)
                      .|++++.  .+ +|+ +++|.+
T Consensus       297 ~L~~~g~--~v-~p~-~~~~~~  314 (409)
T 3jzl_A          297 MLAEFGV--EA-DPV-WDAPRT  314 (409)
T ss_dssp             HHHHTTC--EE-ESC-TTSCCS
T ss_pred             HHHhCCC--cc-cCC-CCCCCc
Confidence            9999864  45 565 444443

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.97  E-value=4.1e-29  Score=223.23  Aligned_cols=236  Identities=20%  Similarity=0.231  Sum_probs=190.8

Q ss_pred             CccccCCCCchHHHHHHHHHhhcCCCceEE---ecchHHHHH-HHHhccCCCCeEEEcC-CCCccHHHHH-------hhh
Q 022194           46 PYDYTRSGNPTRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLL-------SRV  113 (301)
Q Consensus        46 ~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~---~~sG~~ai~-~~~~~~~~g~~Vlv~~-~~y~~~~~~~-------~~~  113 (301)
                      .|.|.+   +.++++++.+++++|.+.+++   ++||++|+. ++.++++|||+|++.+ +.|+++...+       ...
T Consensus        68 gy~Y~~---~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~  144 (427)
T 3hvy_A           68 GYGYND---IGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGS  144 (427)
T ss_dssp             TTCTTC---HHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCC
T ss_pred             CCCCCc---hhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhH
Confidence            444444   348999999999999998888   899999985 6778999999999998 9999886544       145


Q ss_pred             cccCCcEEEEecC----CCHHHHHhhcC--CCceEEEEeC----CCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCc
Q 022194          114 TPKTGVVVKRVNT----CDLDEVASAIG--PWTKLVWVES----PTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSP  181 (301)
Q Consensus       114 ~~~~g~~~~~~~~----~d~~~l~~~l~--~~~~~v~i~~----~~np~G~~~~l~~l~~l~~~--~~~~li~D~~~~~~  181 (301)
                      ++..|++++.++.    .|+++++++++  +++++|++++    |+||+|.+.++++|+++|++  +|+++++|++|+.+
T Consensus       145 l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~  224 (427)
T 3hvy_A          145 LREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEF  224 (427)
T ss_dssp             TGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTT
T ss_pred             HHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcccc
Confidence            6678999999998    68999999998  8899999999    99999999999999999999  89999999999988


Q ss_pred             c-ccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhc--C--CCCCHHhHHHHHcccccHHHHHHH
Q 022194          182 V-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE--G--SGLAPFDCWICLRGVKTMALRVEK  256 (301)
Q Consensus       182 ~-~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~l~~~~~~~~~  256 (301)
                      . ...+...++|++++|+||+++|+...++|+++++ +.+.+++.......  +  .+.+...++.++++++.+..++++
T Consensus       225 ~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r~~~  303 (427)
T 3hvy_A          225 VEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIE  303 (427)
T ss_dssp             TSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCeEEEECCcccccccccceEEEEEEC-HHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHHHHH
Confidence            7 4577778999999999999976543567999887 55666665533222  2  122233467778888888899999


Q ss_pred             HHHHHHHHHHHHHhCCCcceEecCCCCCCcchH
Q 022194          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  289 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~  289 (301)
                      +.+++.++.+.|++++.  .+ +|+ +++|.|.
T Consensus       304 ~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~  332 (427)
T 3hvy_A          304 AVKGAVFCARIMELAGF--DV-LPK-YNDKRTD  332 (427)
T ss_dssp             HHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSS
T ss_pred             HHHHHHHHHHHHHhCCC--ee-cCC-CCCCCce
Confidence            99999999999999874  45 666 5555443

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.96  E-value=8.3e-29  Score=221.11  Aligned_cols=256  Identities=19%  Similarity=0.143  Sum_probs=192.4

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC-----CceEEecchHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA-----DRALCFTSGMAAL   83 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~-----~~~i~~~sG~~ai   83 (301)
                      ..+++|+ +++|.+...+|.+.........  ......|.+. |.+. ++++++++++.+|.     ++++++++|++++
T Consensus        39 ~~~id~~-~g~~~~~~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~  115 (407)
T 3nra_A           39 GRPVDFS-HGDVDAHEPTPGAFDLFSAGVQ--SGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL  115 (407)
T ss_dssp             SCCEETT-SCCTTTSCCCTTHHHHHHHHHH--HTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             Cceeeec-CcCCCCCCCcHHHHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence            3589999 7788876677766554322111  1112345544 5554 89999999999886     4566666667998


Q ss_pred             H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-------C----CHHHHHhhcCCCceEEEEeCCCCC
Q 022194           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------C----DLDEVASAIGPWTKLVWVESPTNP  151 (301)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-------~----d~~~l~~~l~~~~~~v~i~~~~np  151 (301)
                      . ++..++++||+|+++.|.|+++.    ..++..|.+++.++.       +    |++++++++++++++|++++|+||
T Consensus       116 ~~~~~~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~np  191 (407)
T 3nra_A          116 FLAVAATVARGDKVAIVQPDYFANR----KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNP  191 (407)
T ss_dssp             HHHHHTTCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             HHHHHHhCCCCCEEEEcCCcccchH----HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCC
Confidence            6 55667899999999999999886    555667888888876       1    899999999888999999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----c------cCCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          152 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P------LELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       152 ~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----~------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      ||.+.+   +++|+++|++||+++|+||+|+.+.+..    .      ...+.++++.|+||++ |++|++.|+++++ +
T Consensus       192 tG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~  269 (407)
T 3nra_A          192 AGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTE-SLSGYRLGVAFGS-R  269 (407)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTT-CCGGGCCEEEEEC-H
T ss_pred             CCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCccccc-CCCeeeEEEEEcC-H
Confidence            999988   9999999999999999999998644321    1      1245679999999999 5567889999986 4


Q ss_pred             hHHHHHHHhhhhcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          219 RLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      .+.+.+.........+.++..++++...++    .+.+.++++.++++++.+.|++++++.
T Consensus       270 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  330 (407)
T 3nra_A          270 AIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVF  330 (407)
T ss_dssp             HHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCB
T ss_pred             HHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence            566666666655565666666666655554    257777888888999999998876654

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.95  E-value=3.8e-27  Score=209.72  Aligned_cols=251  Identities=16%  Similarity=0.138  Sum_probs=187.0

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccC--CCC-chHHHHHHHHHhhcCCCceEEecchHHHHH-HH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTR--SGN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~--~g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~   86 (301)
                      ..+++|+ +++|+|..++|.+............ ..+...+  +|. +...+++++++++++.++.+++++|++++. ++
T Consensus        43 ~~~id~~-~~~~~g~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l  120 (399)
T 3tqx_A           43 KEVLNFC-ANNYLGLADHPALIKTAQTVVEQYG-FGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLF  120 (399)
T ss_dssp             EEEEECS-SCCTTSCTTCHHHHHHHHHHHHHHC-SCCCSCCCCCCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTH
T ss_pred             eeEEEee-ccCcccccCCHHHHHHHHHHHHHhC-CCCCCcCccccCchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHH
Confidence            4689999 6789997666666544322111000 0011111  244 348999999999999999999999998875 66


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC------CceEEEEeCCCCCccccccHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICDIRK  160 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~l~~  160 (301)
                      ..++++||.|+++.|.|+++.    ..++..|.+++.++..|++++++.+++      ++++|++++|+||||.+.|+++
T Consensus       121 ~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~  196 (399)
T 3tqx_A          121 ETLLGPEDAIISDELNHASII----DGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKS  196 (399)
T ss_dssp             HHHCCTTCEEEEETTCCHHHH----HHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHH
T ss_pred             HHhcCCCCEEEECCcccHHHH----HHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHH
Confidence            778899999999999999886    456678899999998899999988874      8999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCccccCc----c-----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh--
Q 022194          161 IAEMAHAHGALLLVDNSIMSPVLSRP----L-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--  229 (301)
Q Consensus       161 l~~l~~~~~~~li~D~~~~~~~~~~~----~-----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~--  229 (301)
                      |+++|+++|+++|+||+|+.+.....    .     ..+.|+++.|+||+++|++   +|++++++ .+.+.+.....  
T Consensus       197 i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~---gG~~~~~~-~~~~~~~~~~~~~  272 (399)
T 3tqx_A          197 ICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGAS---GGYTSGHK-EIIEWLRNRSRPY  272 (399)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSC---CEEEEECH-HHHHHHHHHCHHH
T ss_pred             HHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCc---eEEEEcCH-HHHHHHHHhCcce
Confidence            99999999999999999975543321    1     1267999999999997554   58988875 45555444322  


Q ss_pred             hcCCCCCHHhHHHHHccccc----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          230 AEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ....+.++...+++...++.    ..+.++++.++.+++.+.|+++
T Consensus       273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (399)
T 3tqx_A          273 LFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL  318 (399)
T ss_dssp             HSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            23446666666665555543    4667778888888999998875

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.95  E-value=4.2e-27  Score=211.71  Aligned_cols=250  Identities=16%  Similarity=0.177  Sum_probs=186.6

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCcc-cc-CCCC-chHHHHHHHHHhhcCCCceEEecchHHHHH-HH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYD-YT-RSGN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~-y~-~~g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~   86 (301)
                      ..+++|+ +++|+|...+|.+............ ..+. |. ..|. +...++++.+++++|.++.+++++|++|+. ++
T Consensus        64 ~~~id~~-~~~~lg~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al  141 (427)
T 2w8t_A           64 KDTILLG-TYNYMGMTFDPDVIAAGKEALEKFG-SGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGII  141 (427)
T ss_dssp             EEEEECS-CCCTTCGGGCHHHHHHHHHHHHHHC-SCCCSCTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred             ceEEEEE-CcccccCCCCHHHHHHHHHHHHHhC-CCCcccccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHH
Confidence            4689999 7789997777776654322211000 1111 11 1244 458999999999999999999999998875 66


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC----CceEEEEeCCCCCccccccHHHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKIA  162 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~----~~~~v~i~~~~np~G~~~~l~~l~  162 (301)
                      ..++++||.|+++.+.|.++..    .++..|.+++.++..|++++++++++    ++++|++++++||+|.+.|+++|+
T Consensus       142 ~~l~~~gd~vl~~~~~h~~~~~----~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~  217 (427)
T 2w8t_A          142 STLAGKGEYVILDADSHASIYD----GCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMV  217 (427)
T ss_dssp             HHHSCTTCEEEEETTCCHHHHH----HHHHSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHH
T ss_pred             HHhcCCCCEEEECCcccHHHHH----HHHHcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHH
Confidence            6678999999999999998864    34566889999998899999998875    789999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCccccC---------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh--hhhc
Q 022194          163 EMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAE  231 (301)
Q Consensus       163 ~l~~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~--~~~~  231 (301)
                      ++|++||+++|+||+|+.+.+..         ....++|+++.|+||+++ ++   +|+++++++ +.+.+...  ....
T Consensus       218 ~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g-~~---gG~v~~~~~-l~~~l~~~~~~~~~  292 (427)
T 2w8t_A          218 AVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG-TV---GGFVVSNHP-KFEAVRLACRPYIF  292 (427)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SC---CEEEEECCT-TGGGGGGTCHHHHS
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc-cC---CCEEEeCHH-HHHHHHHhcccccc
Confidence            99999999999999998776541         112357999999999995 44   488888754 43433322  1223


Q ss_pred             CCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhC
Q 022194          232 GSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       232 ~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.+.++...+++..+++.+   .+.++++.++.+++.+.|+++
T Consensus       293 ~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  335 (427)
T 2w8t_A          293 TASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM  335 (427)
T ss_dssp             SCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            4556666665555554443   677788899999999999875

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.95  E-value=2.2e-27  Score=212.31  Aligned_cols=251  Identities=16%  Similarity=0.086  Sum_probs=185.7

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CC-chHHHHHHHHHhhcCCCceEEecchHHHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~   87 (301)
                      ..++||+ +|+|+|...+|.+.................+... |. +.+++++++++++++.+..+++++|++++. ++.
T Consensus        59 ~~~ld~~-s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~  137 (409)
T 3kki_A           59 PDDIILQ-SNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQ  137 (409)
T ss_dssp             TTSEECC-CSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHH
T ss_pred             CceEEee-ccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHH
Confidence            5789999 7999999888877655322211100011111111 43 347889999999999999999999998885 777


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAH  166 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~  166 (301)
                      .++++||.|++++|.|.++.    ..+...|.++..++..|++++++++.+ ++++|++++++||||.+.++++|+++|+
T Consensus       138 ~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~  213 (409)
T 3kki_A          138 TICQPNTNVYIDFFAHMSLW----EGARYANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISK  213 (409)
T ss_dssp             HHCCTTCEEEEETTSCHHHH----HHHHHTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             HhcCCCCEEEECCCcCHHHH----HHHHHcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHH
Confidence            78999999999999999886    344566889999988899999999974 5899999999999999999999999999


Q ss_pred             HcCCEEEEeCCcCCccccC---------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh--hhhcCCCC
Q 022194          167 AHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSGL  235 (301)
Q Consensus       167 ~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~~  235 (301)
                      +||++||+||+|+.+.+..         ....+.|+++.|+||+++++    +|+++++++. .+.+...  ....+...
T Consensus       214 ~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~----gg~v~~~~~~-~~~~~~~~~~~~~~~~~  288 (409)
T 3kki_A          214 EFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR----AGAIWCNNEV-NRCVPFISYPAIFSSTL  288 (409)
T ss_dssp             HHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS----CEEEEESSSG-GGTHHHHCHHHHHSBCC
T ss_pred             HcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC----ceEEEECHHH-HHHHHHhCcCccccCCC
Confidence            9999999999998755421         11225789999999999643    4888887653 3333322  22234446


Q ss_pred             CHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhC
Q 022194          236 APFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       236 ~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++..++++..+++.+   .+.++++.++.+++.+.|++.
T Consensus       289 ~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~  327 (409)
T 3kki_A          289 LPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL  327 (409)
T ss_dssp             CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            666665655555543   456677888888999999875

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.95  E-value=1.8e-26  Score=204.76  Aligned_cols=254  Identities=15%  Similarity=0.159  Sum_probs=180.7

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC----CceEEecchHHHHH-HH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA----DRALCFTSGMAALA-AV   86 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~~   86 (301)
                      .+++|...+..++  .+|.+.......   .....+.|.+...+.++++++++++.+|.    ++++++++|++++. ++
T Consensus        28 ~~i~~~~~~~~~~--~~~~v~~a~~~~---~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~  102 (391)
T 3dzz_A           28 KELPMWIAEMDFK--IAPEIMASMEEK---LKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMV  102 (391)
T ss_dssp             TCEECCSSCCSSC--CCHHHHHHHHHH---HTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHH
T ss_pred             CceeccccCCCCC--CCHHHHHHHHHH---HhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHH
Confidence            6888884433343  344444332221   11133455544323488899999988872    34555566689986 66


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC--------CCHHHHHhhcC-CCceEEEEeCCCCCcccc--
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQI--  155 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~-~~~~~v~i~~~~np~G~~--  155 (301)
                      ..++++||+|+++.|.|+++.    ..++..|.+++.++.        .|+++++++++ +++++|++++|+||||.+  
T Consensus       103 ~~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~  178 (391)
T 3dzz_A          103 RQFTSPGDQILVQEPVYNMFY----SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWS  178 (391)
T ss_dssp             HHHSCTTCEEEECSSCCHHHH----HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCC
T ss_pred             HHhCCCCCeEEECCCCcHHHH----HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccC
Confidence            677899999999999999986    455677889988886        48999999998 789999999999999999  


Q ss_pred             -ccHHHHHHHHHHcCCEEEEeCCcCCcccc-----CccCCC---Cc--EEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          156 -CDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELG---AD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       156 -~~l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~~~~~---~d--i~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                       .++++|+++|++||+++|+||+|+.+.+.     .....+   .|  +++.|+||++ |++|++.|+++++++.+.+.+
T Consensus       179 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~  257 (391)
T 3dzz_A          179 EEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTF-NLAALHAACAIIPNPDLRARA  257 (391)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHH-TCTTTCCEEEECCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhc-cccchhheEEEECCHHHHHHH
Confidence             56999999999999999999999864432     111222   34  9999999999 556789999999866776766


Q ss_pred             HHhhhhc-CCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHh-CCCcc
Q 022194          225 YFLQNAE-GSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLAS-HPRVK  275 (301)
Q Consensus       225 ~~~~~~~-~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~-~~~v~  275 (301)
                      ....... ..+.++..+.++...++    .+.+.++++.++++++.+.|++ ++++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  314 (391)
T 3dzz_A          258 EESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVK  314 (391)
T ss_dssp             HHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcE
Confidence            5554322 23444444444433332    2567778888889999999988 67654

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.95  E-value=5.2e-26  Score=200.63  Aligned_cols=247  Identities=15%  Similarity=0.218  Sum_probs=179.4

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH-
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA-   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-   84 (301)
                      .+++|++....+|.  +|.+.........   .....|... |.+. ++++.+++.+.+|.    ++++++++|++++. 
T Consensus        30 ~~i~l~~~~~~~~~--~~~v~~a~~~~~~---~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~  104 (370)
T 2z61_A           30 KVIHLEIGEPDFNT--PKPIVDEGIKSLK---EGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFF  104 (370)
T ss_dssp             CCEECCCCSCSSCC--CHHHHHHHHHHHH---TTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHH
T ss_pred             CEEEccCCCCCCCC--CHHHHHHHHHHHH---cCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHH
Confidence            57888843333443  3444332211110   112345443 4443 66666666665442    35666677789986 


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l  164 (301)
                      ++..++++||+|++++|.|+++.    ..++..|.+++.++ .|++++++++++++++|++++|+||||.+.+++ |+++
T Consensus       105 ~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~~  178 (370)
T 2z61_A          105 ALSSIIDDGDEVLIQNPCYPCYK----NFIRFLGAKPVFCD-FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IYEF  178 (370)
T ss_dssp             HHHHHCCTTCEEEEESSCCTHHH----HHHHHTTCEEEEEC-SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HHHH
T ss_pred             HHHHhcCCCCEEEEeCCCchhHH----HHHHHcCCEEEEeC-CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HHHH
Confidence            56667899999999999999987    44556788998888 789999999988899999999999999999999 9999


Q ss_pred             HHHcCCEEEEeCCcCCcccc----Ccc----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCC
Q 022194          165 AHAHGALLLVDNSIMSPVLS----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (301)
Q Consensus       165 ~~~~~~~li~D~~~~~~~~~----~~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
                      |+++|+++|+||+|+.+.+.    ...    ..+.|+++.|+||++ |++|++.|++++++ .+.+.+.........+.+
T Consensus       179 ~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~  256 (370)
T 2z61_A          179 AYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLY-AMTGWRIGYVISND-EIIEAILKLQQNLFISAP  256 (370)
T ss_dssp             HHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTT-TCGGGCCEEEECCH-HHHHHHHHHHHHHTSSSC
T ss_pred             HHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhcc-CCccceEEEEEECH-HHHHHHHHHHhhcccCCC
Confidence            99999999999999865542    111    236799999999999 56788999999875 566666665555556677


Q ss_pred             HHhHHHHHccccc-----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          237 PFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       237 ~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +..++++...++.     +.+.++++.++.+++.+.|+++
T Consensus       257 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  296 (370)
T 2z61_A          257 TISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF  296 (370)
T ss_dssp             HHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7777777777754     3445667778888888888875

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.95  E-value=4.6e-26  Score=202.19  Aligned_cols=218  Identities=20%  Similarity=0.282  Sum_probs=162.5

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      .|.+. |.+. ++++.+++.+.+|.    ++++++++|++++. ++..++++||+|++++|.|+.+.    ..++..|.+
T Consensus        63 ~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~  138 (385)
T 1b5p_A           63 KYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYP----EMVRFAGGV  138 (385)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTCE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHH----HHHHHcCCE
Confidence            45543 5554 77788888776664    34555555679986 56667899999999999999886    445567888


Q ss_pred             EEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcccc----Cc
Q 022194          121 VKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RP  186 (301)
Q Consensus       121 ~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~----~~  186 (301)
                      ++.++.+       |++++++++++++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+...+.    ..
T Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~  218 (385)
T 1b5p_A          139 VVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP  218 (385)
T ss_dssp             EEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCG
T ss_pred             EEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCH
Confidence            8888863       688999999888999999999999999965   899999999999999999999865442    11


Q ss_pred             cCC--CCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc-------cHHHHHHHH
Q 022194          187 LEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-------TMALRVEKQ  257 (301)
Q Consensus       187 ~~~--~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~  257 (301)
                      ...  +.++++.|+||++ |++|+|.|++++++ .+.+.+.........+.+...+.++...++       ++.+.++++
T Consensus       219 ~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  296 (385)
T 1b5p_A          219 GRVAPEHTLTVNGAAKAF-AMTGWRIGYACGPK-EVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAY  296 (385)
T ss_dssp             GGTCTTTEEEEEESTTTT-TCGGGCCEEEECCH-HHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCEEEEEechhhc-CCcccceEEEEeCH-HHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            222  6789999999999 56788999999864 565655555444444555555555444442       345566777


Q ss_pred             HHHHHHHHHHHHhC
Q 022194          258 QDNAQKIAEFLASH  271 (301)
Q Consensus       258 ~~~~~~l~~~l~~~  271 (301)
                      .++++.+.+.|+++
T Consensus       297 ~~~~~~l~~~L~~~  310 (385)
T 1b5p_A          297 RRRRDLLLEGLTAL  310 (385)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC
Confidence            78888888888765

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.95  E-value=3.4e-26  Score=203.76  Aligned_cols=251  Identities=15%  Similarity=0.157  Sum_probs=181.1

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccC-CCCc-hHHHHHHHHHhhcCCCceEEecchHHHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGNP-TRDALESLLAKLDKADRALCFTSGMAALA-AVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~-~g~~-~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~   87 (301)
                      ..+++|+ .++++|...+|.+.................|.. .|.+ .+++++++++++++.++++++++|++++. ++.
T Consensus        43 ~~~idl~-~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~  121 (398)
T 3a2b_A           43 RRVLMFG-SNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLS  121 (398)
T ss_dssp             EEEEECS-CSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHH
T ss_pred             ceEEEee-cccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH
Confidence            4689998 556667655665554432211100011112222 2554 49999999999999988888899999986 666


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC----CceEEEEeCCCCCccccccHHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKIAE  163 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~----~~~~v~i~~~~np~G~~~~l~~l~~  163 (301)
                      .++++||.|++++|.|..+.    ..++..|.+++.++..|++++++.+++    ++++|++++++||||.+.++++|++
T Consensus       122 ~~~~~gd~V~~~~p~~~~~~----~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~  197 (398)
T 3a2b_A          122 CLMGRNDYILLDERDHASII----DGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTS  197 (398)
T ss_dssp             HSSCTTCEEEEETTCCHHHH----HHHHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHH
T ss_pred             HHhCCCCEEEECCccCHHHH----HHHHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHH
Confidence            77899999999999999886    445567899999998899999998875    7899999999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCcccc---Ccc-C-----CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh-h-hhcC
Q 022194          164 MAHAHGALLLVDNSIMSPVLS---RPL-E-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-Q-NAEG  232 (301)
Q Consensus       164 l~~~~~~~li~D~~~~~~~~~---~~~-~-----~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~-~-~~~~  232 (301)
                      +|+++|+++|+||+|+.+.+.   ... .     .++|++++|+||+++ ++|   |++++++ .+.+.+... . ....
T Consensus       198 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G---G~~~~~~-~~~~~l~~~~~~~~~~  272 (398)
T 3a2b_A          198 IANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG---GFVAGDA-DVIDFLKHNARSVMFS  272 (398)
T ss_dssp             HHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC---EEEEECH-HHHHHHHHHCHHHHSS
T ss_pred             HHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC---cEEEeCH-HHHHHHHHhcccceec
Confidence            999999999999999876542   111 1     125899999999994 655   8888864 555555443 2 2333


Q ss_pred             CCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          233 SGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       233 ~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ...++...+++...++.   +.+.++++.++++++.+.|+++
T Consensus       273 ~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  314 (398)
T 3a2b_A          273 ASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH  314 (398)
T ss_dssp             BCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc
Confidence            44455444333344433   2456677888888899999876

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.95  E-value=2.6e-26  Score=203.79  Aligned_cols=254  Identities=13%  Similarity=0.160  Sum_probs=181.4

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--C--CceEEecchHHHHH-H
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--A--DRALCFTSGMAALA-A   85 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~--~~~i~~~sG~~ai~-~   85 (301)
                      ..+++|+....  +...+|.+........   ....+.|.+...+.++++++++++.++  .  ++++++++|++++. +
T Consensus        32 ~~~i~l~~~~~--~~~~~~~v~~a~~~~~---~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~  106 (391)
T 4dq6_A           32 NDLLPMWVADM--DFKAAPCIIDSLKNRL---EQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLL  106 (391)
T ss_dssp             SCSEECCSSSC--SSCCCHHHHHHHHHHH---TTCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHH
T ss_pred             CCceeccccCC--CCCCCHHHHHHHHHHH---hCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHH
Confidence            35688884332  2234454544322211   113345554333448899999999987  3  35666677789986 6


Q ss_pred             HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---------CHHHHHhhcCCCceEEEEeCCCCCcccc-
Q 022194           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---------DLDEVASAIGPWTKLVWVESPTNPRQQI-  155 (301)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---------d~~~l~~~l~~~~~~v~i~~~~np~G~~-  155 (301)
                      +..++++||+|+++.|.|+++.    ..++..|.+++.++.+         |++++++++++ +++|++++|+||||.+ 
T Consensus       107 ~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~  181 (391)
T 4dq6_A          107 INELTKANDKIMIQEPVYSPFN----SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVW  181 (391)
T ss_dssp             HHHHSCTTCEEEECSSCCTHHH----HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCC
T ss_pred             HHHhCCCCCEEEEcCCCCHHHH----HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCc
Confidence            6677899999999999999987    4455678888888765         88999999988 9999999999999999 


Q ss_pred             --ccHHHHHHHHHHcCCEEEEeCCcCCccccC-----ccCC-----CCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          156 --CDIRKIAEMAHAHGALLLVDNSIMSPVLSR-----PLEL-----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       156 --~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~~~~-----~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                        .++++|+++|++||+++|+||+|+...+..     ....     +.++++.|+||++ |++|++.|+++++++.+.+.
T Consensus       182 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~  260 (391)
T 4dq6_A          182 TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTF-NIAGLQSSYVVLPDEKDYKL  260 (391)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHH-TCGGGCCEEEECCSHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhc-cCcccceEEEEeCCHHHHHH
Confidence              458999999999999999999998654321     1122     3459999999999 55678999999987667676


Q ss_pred             HHHhhhhcC-CCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHh-CCCcc
Q 022194          224 LYFLQNAEG-SGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLAS-HPRVK  275 (301)
Q Consensus       224 ~~~~~~~~~-~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~-~~~v~  275 (301)
                      +.......+ .+.++..+.++...++    .+.+.++++.++++++.+.|++ .+++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  318 (391)
T 4dq6_A          261 LDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLK  318 (391)
T ss_dssp             HHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence            665544333 3556555555444433    2566677888888899999987 56653

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.95  E-value=6.8e-26  Score=201.08  Aligned_cols=254  Identities=18%  Similarity=0.223  Sum_probs=179.4

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~   84 (301)
                      ..+++|++....++  .+|.+........   ......|... |.+. ++++.+++.+.+|.    ++++++++|++++.
T Consensus        30 ~~~i~l~~~~~~~~--~~~~v~~a~~~~~---~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~  104 (388)
T 1j32_A           30 IDVCSFSAGEPDFN--TPKHIVEAAKAAL---EQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF  104 (388)
T ss_dssp             CCCEECCCSSCSSC--CCHHHHHHHHHHH---HTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             CCEEECCCCCCCCC--CCHHHHHHHHHHH---hcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence            35788884443344  3343333221111   0112345544 4444 77777777776663    24555555679986


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                       ++..++++||+|++++|.|+++.    ..++..|.+++.++.+       |++++++++++++++|++++|+||||.+.
T Consensus       105 ~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~  180 (388)
T 1j32_A          105 NLMLAMIEPGDEVIIPAPFWVSYP----EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVY  180 (388)
T ss_dssp             HHHHHHCCTTCEEEEESSCCTHHH----HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             HHHHHhcCCCCEEEEcCCCChhHH----HHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCC
Confidence             55667899999999999999986    4445678888888763       78999999988899999999999999996


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCccccC-----ccC-----CCCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       157 ~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~~~-----~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                      +   +++|+++|+++|+++|+||+|+.+.+..     ...     .+.++++.|+||++ |++|++.|++++++ .+.+.
T Consensus       181 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~  258 (388)
T 1j32_A          181 TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPV-PLVKA  258 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCH-HHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhcc-CCcccceEEEEeCH-HHHHH
Confidence            4   8999999999999999999998654421     111     35789999999999 66788999999875 46666


Q ss_pred             HHHhhhhcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          224 LYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      +...........++..+.++...++    .+.+.++++.++++++.+.|++++++.
T Consensus       259 l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  314 (388)
T 1j32_A          259 ATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLE  314 (388)
T ss_dssp             HHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCB
T ss_pred             HHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence            6555554455556665554433332    356677888888999999998876654

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.95  E-value=4.9e-26  Score=200.22  Aligned_cols=248  Identities=15%  Similarity=0.204  Sum_probs=180.7

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~   87 (301)
                      ..+++|++..++++  .+|.+......  ...  ....|.   .+...++++.++++++.+  ++++++||++++. ++.
T Consensus        32 ~~~i~l~~~~~~~~--~~~~v~~a~~~--~~~--~~~~y~---~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~  102 (363)
T 3ffh_A           32 TKITKLSSNENPLG--TSKKVAAIQAN--SSV--ETEIYP---DGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTR  102 (363)
T ss_dssp             SCCEECSSCSCTTC--CCHHHHHHHHT--CBS--CCCBC-------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred             CceEEccCCCCCCC--CCHHHHHHHHH--HHH--HhhcCC---CcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHH
Confidence            36789985445555  34544443211  111  122232   234678899999998864  5666666789986 566


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~  162 (301)
                      .++++||+|++++|.|+++.    ..++..|.+++.++.+     |++++++++++++++|++++|+||||.+.|+++|.
T Consensus       103 ~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~  178 (363)
T 3ffh_A          103 VLLDTTTNTVMATPTFVQYR----QNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQ  178 (363)
T ss_dssp             HHCSTTCEEEEEESSCHHHH----HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             HHccCCCEEEEcCCChHHHH----HHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHH
Confidence            67899999999999999886    4556678899999877     89999999999999999999999999999999999


Q ss_pred             HHHHHc--CCEEEEeCCcCCcccc-------CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCC
Q 022194          163 EMAHAH--GALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  233 (301)
Q Consensus       163 ~l~~~~--~~~li~D~~~~~~~~~-------~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~  233 (301)
                      ++++.+  |+++|+|++|+.....       .....+.++++.|+||++ |++|++.|+++++ +.+.+.+.....  .+
T Consensus       179 ~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~l~~~~~--~~  254 (363)
T 3ffh_A          179 AFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIY-GLASARVGYGIAD-KEIIRQLNIVRP--PF  254 (363)
T ss_dssp             HHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTT-CCSSCCCEEEEEC-HHHHHHHHHTCC--SC
T ss_pred             HHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhh-cCchhceeeeecC-HHHHHHHHHhCC--CC
Confidence            998887  9999999999843321       112335679999999999 6678899999985 556565554433  45


Q ss_pred             CCCHHhHHHHHccc---ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          234 GLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       234 ~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      +.++..++++...+   +.+.+.++++.++++++.+.|++++++.
T Consensus       255 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~  299 (363)
T 3ffh_A          255 NTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVK  299 (363)
T ss_dssp             CCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred             CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence            56666666665555   3456677888888999999998866654

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.95  E-value=7.2e-26  Score=200.67  Aligned_cols=250  Identities=17%  Similarity=0.149  Sum_probs=181.5

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC--CC-chHHHHHHHHHhhcCCCceEEecchHHHHH-HH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~   86 (301)
                      ..+++|+ ++.++|...+|.+........... ...+..+++  |. +...++++.+++++|.++.+++++|++++. ++
T Consensus        39 ~~~id~~-~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~  116 (384)
T 1bs0_A           39 RQYLNFS-SNDYLGLSHHPQIIRAWQQGAEQF-GIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVI  116 (384)
T ss_dssp             EEEEECS-CCCTTSGGGCHHHHHHHHHHHHHH-CSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred             ceEEEee-ccCccCCCCCHHHHHHHHHHHHHh-CCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHH
Confidence            4689999 566677655665554432211100 011111222  33 448999999999999999999999998885 66


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC---CceEEEEeCCCCCccccccHHHHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAE  163 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~v~i~~~~np~G~~~~l~~l~~  163 (301)
                      ..++++||.|++++|.|..+.    ..++..|.+++.++..|++++++.+++   ++++|++++++||||.+.|+++|++
T Consensus       117 ~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~  192 (384)
T 1bs0_A          117 AAMMAKEDRIAADRLSHASLL----EAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQ  192 (384)
T ss_dssp             HHHCCTTCEEEEETTCCHHHH----HHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHH
T ss_pred             HHhCCCCcEEEEcccccHHHH----HHHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHH
Confidence            667899999999999999876    444567899999998899999998864   3789999999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCcccc---C----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh--hhcCCC
Q 022194          164 MAHAHGALLLVDNSIMSPVLS---R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSG  234 (301)
Q Consensus       164 l~~~~~~~li~D~~~~~~~~~---~----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~--~~~~~~  234 (301)
                      +|+++|+++|+||+|+.+.+.   .    ....+.|++++|+||+++ ++|   |+++++ +.+.+.+....  ...+..
T Consensus       193 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~  267 (384)
T 1bs0_A          193 VTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSG---AAVLCS-STVADYLLQFARHLIYSTS  267 (384)
T ss_dssp             HHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCC---EEEEEC-HHHHHHHHHHCHHHHSSBC
T ss_pred             HHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccC---cEEEeC-HHHHHHHHHhchhhhcCCC
Confidence            999999999999999876532   1    112357899999999994 544   888886 45555554432  222234


Q ss_pred             CCHHhHHHHHccccc-----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          235 LAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       235 ~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .++..+.++..+++.     ..+.++++.++++++.+.|+++
T Consensus       268 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (384)
T 1bs0_A          268 MPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL  309 (384)
T ss_dssp             CCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence            666666555444443     3456677888888999999876

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.95  E-value=3.9e-26  Score=203.49  Aligned_cols=251  Identities=17%  Similarity=0.182  Sum_probs=184.6

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCC--CccccCCC-CchHHHHHHHHHhhcCCCceEEecchHHHHH-HH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENG--PYDYTRSG-NPTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~--~~~y~~~g-~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~   86 (301)
                      ..+++|+ +++++|..++|.+..............  ...|.. | .+...++++.+++++|.++.+++++|++++. ++
T Consensus        45 ~~~id~~-~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~-g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~  122 (401)
T 1fc4_A           45 SHVINFC-ANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFIC-GTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLF  122 (401)
T ss_dssp             CEEEECC-CSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHH-CCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTH
T ss_pred             ccEEEee-ccCcccccCCHHHHHHHHHHHHHhCCCCCCCCccc-CCcHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHH
Confidence            4789999 557888645555554322111000000  011111 2 3458999999999999988899999998875 66


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCC------CceEEEEeCCCCCccccccHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICDIRK  160 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~l~~  160 (301)
                      ..++++||.|+++.|.|..+.    ..++..|.+++.++..|++++++.+++      ++++|++++|+||||.+.++++
T Consensus       123 ~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~  198 (401)
T 1fc4_A          123 ETLLGAEDAIISDALNHASII----DGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKG  198 (401)
T ss_dssp             HHHCCTTCEEEEETTCCHHHH----HHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHH
T ss_pred             HHHcCCCCEEEEcchhHHHHH----HHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHH
Confidence            677899999999999998775    345678899999998899999988864      7899999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCcccc---------CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh--h
Q 022194          161 IAEMAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--N  229 (301)
Q Consensus       161 l~~l~~~~~~~li~D~~~~~~~~~---------~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~--~  229 (301)
                      |.++|+++|+++|+||+|+.+...         .....+.|+++.|+||+++++.   +|+++++ +.+.+.+....  .
T Consensus       199 i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~---gG~~~~~-~~~~~~l~~~~~~~  274 (401)
T 1fc4_A          199 VCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS---GGYTAAR-KEVVEWLRQRSRPY  274 (401)
T ss_dssp             HHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS---CEEEEEC-HHHHHHHHHHCHHH
T ss_pred             HHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCC---CEEEEcC-HHHHHHHHHhCcCc
Confidence            999999999999999999744431         1112357999999999995554   4888886 45556554433  2


Q ss_pred             hcCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhC
Q 022194          230 AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ....+.++..++++..+++.+   .+.++++.++++++.+.|+++
T Consensus       275 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  319 (401)
T 1fc4_A          275 LFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA  319 (401)
T ss_dssp             HHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            234566777777766666554   466788888899999999876

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.94  E-value=3.1e-26  Score=202.44  Aligned_cols=254  Identities=12%  Similarity=0.126  Sum_probs=183.0

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC----CceEEecchHHHHH-H
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA----DRALCFTSGMAALA-A   85 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~   85 (301)
                      ..+++|++....++  .+|.+........   ......|.+.+...++++.+++.+.++.    ++++++++|++++. +
T Consensus        23 ~~~idl~~~~~~~~--~~~~v~~a~~~~~---~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~   97 (377)
T 3fdb_A           23 QGVLPLWVAESDFS--TCPAVLQAITDAV---QREAFGYQPDGSLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIA   97 (377)
T ss_dssp             TTSEECCSSCCCSC--CCHHHHHHHHHHH---HTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHH
T ss_pred             CCeeeecccCCCCC--CCHHHHHHHHHHH---HcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHH
Confidence            46889985443344  4454443321111   1123345443433477888888776653    35666677789986 6


Q ss_pred             HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---CHHHHHhhcCCCceEEEEeCCCCCcccccc---HH
Q 022194           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---DLDEVASAIGPWTKLVWVESPTNPRQQICD---IR  159 (301)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~  159 (301)
                      +..++++||+|+++.|.|+++.    ..++..|.+++.++.+   |+++++++++++++++++++|+||||.+.+   ++
T Consensus        98 ~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~  173 (377)
T 3fdb_A           98 IDHFTPAQSKVIVPTPAYPPFF----HLLSATQREGIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLN  173 (377)
T ss_dssp             HHHHSCTTCCEEEEESCCTHHH----HHHHHHTCCEEEEECTTSCCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHH
T ss_pred             HHHhcCCCCEEEEcCCCcHhHH----HHHHHcCCEEEEccCCCCCCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHH
Confidence            6667899999999999999987    4455678888888876   899999999888999999999999999975   77


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCccccC-----cc----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVLSR-----PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  230 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~~~-----~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~  230 (301)
                      +|+++|++||+++|+||+|+...+..     +.    ..+.++++.|+||++ |.+|++.|+++..++.+.+.+......
T Consensus       174 ~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~~  252 (377)
T 3fdb_A          174 ELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAW-NIAGLKCAQIIFSNPSDAEHWQQLSPV  252 (377)
T ss_dssp             HHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTT-TCGGGCCEEEECCSHHHHHHHHHSCHH
T ss_pred             HHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhc-cCcchhheEEEeCCHHHHHHHHHHHHh
Confidence            78888999999999999998644322     11    123469999999999 567889998888667777766665555


Q ss_pred             cCCCCCHHhHHHHHccccc----HHHHHHHHHHHHHHHHHHHHh-CCCc
Q 022194          231 EGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS-HPRV  274 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~-~~~v  274 (301)
                      ...+.++..++++...++.    +.+.++++.++.+++.+.|++ +|++
T Consensus       253 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  301 (377)
T 3fdb_A          253 IKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGA  301 (377)
T ss_dssp             HHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             hcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence            5566666666665444433    466777888888899999987 5654

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.94  E-value=8.9e-26  Score=200.60  Aligned_cols=249  Identities=18%  Similarity=0.211  Sum_probs=176.9

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH-
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA-   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-   84 (301)
                      .+++|++....++.  +|.+.........   .....|... |.+. ++++.+++.+.+|.    +++++++||++++. 
T Consensus        42 ~~i~l~~~~~~~~~--~~~v~~a~~~~~~---~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~  116 (389)
T 1o4s_A           42 DVINLTAGEPDFPT--PEPVVEEAVRFLQ---KGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFN  116 (389)
T ss_dssp             CCEECCCSSCSSCC--CHHHHHHHHHHHT---TCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHH
T ss_pred             CEEEccCCCCCCCC--CHHHHHHHHHHHh---cCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHH
Confidence            57888744333442  3433332211111   112345443 4443 66666666665564    35556666678986 


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                      ++..++++||+|++++|.|+++.    ..++..|.+++.++.+       |++++++++++++++|++++|+||||.+.+
T Consensus       117 ~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~  192 (389)
T 1o4s_A          117 AFMALLDPGDEVIVFSPVWVSYI----PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYR  192 (389)
T ss_dssp             HHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCC
Confidence            56667889999999999999987    4445678888888753       789999999888999999999999999976


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCcCCccccC----cc----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHH
Q 022194          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLSR----PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (301)
Q Consensus       158 ---l~~l~~l~~~~~~~li~D~~~~~~~~~~----~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~  226 (301)
                         +++|+++|+++|+++|+||+|+.+.+..    ..    ..+.|+++.|+||++ |++|++.|++++++ .+.+.+..
T Consensus       193 ~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~l~~~~-~~~~~l~~  270 (389)
T 1o4s_A          193 REFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISSE-KVATAVSK  270 (389)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECCH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhc-CCcccceEEEEeCH-HHHHHHHH
Confidence               9999999999999999999998765421    11    146899999999999 56788899999864 56666655


Q ss_pred             hhhhcCCCCCHHhHHHHHccccc-HHHHHHHHHHHHHHHHHHHHhC
Q 022194          227 LQNAEGSGLAPFDCWICLRGVKT-MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .......+.++..+.++...++. +.+.++++.++++.+.+.|+++
T Consensus       271 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~L~~~  316 (389)
T 1o4s_A          271 IQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKM  316 (389)
T ss_dssp             HHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence            55544555666666655555543 5666778888888999999875

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.94  E-value=4.9e-26  Score=201.12  Aligned_cols=214  Identities=17%  Similarity=0.206  Sum_probs=166.3

Q ss_pred             HHHHHHHHHhhcC---CCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           57 RDALESLLAKLDK---ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~---~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      ..++++.++++++   .+++++++||++|+. ++..++++||+|+++.|.|+++.    ..++..|.+++.++.+     
T Consensus        65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~  140 (375)
T 3op7_A           65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLY----DIPKSLGAEVDLWQIEEENGW  140 (375)
T ss_dssp             CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHH----HHHHHTTCEEEEEEEEGGGTT
T ss_pred             hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHHcCCEEEEEeccccCCC
Confidence            5678888888763   246777777789986 66778899999999999999986    4456678888887754     


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----ccCCCCcEEEecc
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----PLELGADIVMHSA  198 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----~~~~~~di~~~S~  198 (301)
                        |++++++++++++++|++++|+||+|.+.+   +++|+++|++||+++|+||+|+......    ....+.++++.|+
T Consensus       141 ~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~  220 (375)
T 3op7_A          141 LPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSL  220 (375)
T ss_dssp             EECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEES
T ss_pred             CCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEC
Confidence              899999999999999999999999999998   9999999999999999999998654431    1123567999999


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccH----HHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      ||++ |.+|++.|++++ ++.+.+.+.......+.+.++..++++...++..    .+.++.+.++++.+.+.|++++.+
T Consensus       221 sK~~-~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  298 (375)
T 3op7_A          221 SKTY-SLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLV  298 (375)
T ss_dssp             SSSS-SCGGGCCEEEEC-CHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             hhhc-CCcccceEEEEe-CHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence            9999 556788999998 4667776666665555566666666655555443    344555677888899999887766


Q ss_pred             ce
Q 022194          275 KK  276 (301)
Q Consensus       275 ~~  276 (301)
                      ..
T Consensus       299 ~~  300 (375)
T 3op7_A          299 SY  300 (375)
T ss_dssp             EE
T ss_pred             eE
Confidence            43

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.6e-26  Score=206.83  Aligned_cols=252  Identities=14%  Similarity=0.150  Sum_probs=177.2

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~   84 (301)
                      ..+++|+.+...++  .+|.+.........  ......|++. |.+. ++++.+++.+.+|.    ++++++++|++|+.
T Consensus        57 ~~~i~l~~g~~~~~--~~~~v~~a~~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~  132 (447)
T 3b46_A           57 RELINLGQGFFSYS--PPQFAIKEAQKALD--IPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGIL  132 (447)
T ss_dssp             SCCEECCCCSCSSC--CCHHHHHHHHHHTT--SGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHH
T ss_pred             CCeEEccCCCCCCC--CCHHHHHHHHHHHh--CcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence            46889984443344  34444433222111  1122356554 5554 77788888777664    24555555579985


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-----------------CCHHHHHhhcCCCceEEEEe
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----------------CDLDEVASAIGPWTKLVWVE  146 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-----------------~d~~~l~~~l~~~~~~v~i~  146 (301)
                       ++..++++||+|++++|.|+++..    .++..|.+++.++.                 .|++++++++.+++++|+++
T Consensus       133 ~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~  208 (447)
T 3b46_A          133 SCLMGLLNAGDEVIVFEPFFDQYIP----NIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIIN  208 (447)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEE
T ss_pred             HHHHHHcCCCCEEEEeCCCchhHHH----HHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEe
Confidence             666678999999999999999874    44566777776653                 27899999998889999999


Q ss_pred             CCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCccccC----cc-----CCCCcEEEecccccccCCCCceeeEEE
Q 022194          147 SPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSR----PL-----ELGADIVMHSATKFIAGHSDVMAGVLA  214 (301)
Q Consensus       147 ~~~np~G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~~~~----~~-----~~~~di~~~S~sK~~~g~~g~~~g~~~  214 (301)
                      +|+||||.+.   ++++|+++|++||+++|+||+|+...+..    ..     ..+.++++.|+||++ +++|++.|+++
T Consensus       209 ~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~riG~~~  287 (447)
T 3b46_A          209 TPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSF-AATGWRIGWVL  287 (447)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHT-TCTTSCCEEEE
T ss_pred             CCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhc-CCcchhhEEEE
Confidence            9999999996   58999999999999999999998644321    11     236899999999999 55688999999


Q ss_pred             EcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc------HHHHHHHHHHHHHHHHHHHHhC
Q 022194          215 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++++.+.+.+.........+.++..+.++...++.      +.+.++++.++++.+.+.|+++
T Consensus       288 ~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  350 (447)
T 3b46_A          288 SLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL  350 (447)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            94456666665555444555566655555444432      4556677788888888888865

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.94  E-value=5e-25  Score=193.50  Aligned_cols=238  Identities=17%  Similarity=0.170  Sum_probs=172.0

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecch-HHHHH-HHHh
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTH   88 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~-~~~~   88 (301)
                      .+++|++..+.+|..  |.+   .     .  .....|..   +...++++.++++++.+ +.+++++| ++++. ++..
T Consensus        30 ~~i~l~~~~~~~~~~--~~v---a-----~--~~~~~Y~~---~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~   94 (356)
T 1fg7_A           30 GDVWLNANEYPTAVE--FQL---T-----Q--QTLNRYPE---CQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRA   94 (356)
T ss_dssp             CSEECSSCCCSSCCC--CCC---C-----C--CCTTSCCC---SSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH
T ss_pred             ceEEeeCCCCCCCCC--HhH---h-----h--hhhccCCC---ccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHH
Confidence            579998666677753  433   1     0  12233433   23578889999998876 45555555 68886 5666


Q ss_pred             ccCCC-CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcCCCceEEEEeCCCCCccccccH---H
Q 022194           89 LLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI---R  159 (301)
Q Consensus        89 ~~~~g-~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l---~  159 (301)
                      ++++| |+|++++|.|+++..    .++..|.+++.++.+     |+++++++++ ++++|++++|+||||.+.+.   +
T Consensus        95 ~~~~g~d~Vl~~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~  169 (356)
T 1fg7_A           95 FCEPGKDAILYCPPTYGMYSV----SAETIGVECRTVPTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFR  169 (356)
T ss_dssp             HCCTTTCEEEECSSSCTHHHH----HHHHHTCEEEECCCCTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             HhCCCCCEEEEeCCChHHHHH----HHHHcCCEEEEeeCCCCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHH
Confidence            78899 999999999999874    445568888888753     7899999888 89999999999999999875   4


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCccc-cC----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCC
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVL-SR----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~-~~----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  234 (301)
                      +|+++|+ +|+++|+||+|+.... ..    ....+.++++.|+||++ |++|+|.|++++++ .+.+.+.....  .++
T Consensus       170 ~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~-~~~~~l~~~~~--~~~  244 (356)
T 1fg7_A          170 TLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAF-ALAGLRCGFTLANE-EVINLLMKVIA--PYP  244 (356)
T ss_dssp             HHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTT-CCGGGCCEEEEECH-HHHHHHHHHSC--SSC
T ss_pred             HHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhh-cCchhhhEEEEeCH-HHHHHHHHhcC--CCC
Confidence            5556666 9999999999985431 11    12346789999999999 66788999999864 55565544333  335


Q ss_pred             CCHHhHHHHHccccc-----HHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          235 LAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       235 ~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      .++..+.++...++.     +.+.++++.++++++.+.|++++.+
T Consensus       245 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  289 (356)
T 1fg7_A          245 LSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCV  289 (356)
T ss_dssp             SCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred             CCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            666666666666553     4556677788888999999887653

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.94  E-value=9.1e-26  Score=197.80  Aligned_cols=244  Identities=14%  Similarity=0.162  Sum_probs=180.2

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~   87 (301)
                      ..+++|+++.++++  .+|.+.........    ....|   ..+...+++++++++++.+  ++++++||++++. ++.
T Consensus        16 ~~~i~l~~~~~~~~--~~~~v~~a~~~~~~----~~~~y---~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~   86 (354)
T 3ly1_A           16 DNPIRINFNENPLG--MSPKAQAAARDAVV----KANRY---AKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIE   86 (354)
T ss_dssp             SSCEECSSCCCSSC--CCHHHHHHHHHTGG----GTTSC---CHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHH
T ss_pred             CceEEccCCCCCCC--CCHHHHHHHHHHHh----hCcCC---CCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHH
Confidence            47899985555555  44544443221111    12222   2345789999999999864  5555666679986 556


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcC--CCceEEEEeCCCCCccccccHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--PWTKLVWVESPTNPRQQICDIRK  160 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~--~~~~~v~i~~~~np~G~~~~l~~  160 (301)
                      .++++||+|+++.|.|+++.    ..++..|.+++.++.+     |+++++++++  +++++|++++|+||||.+.++++
T Consensus        87 ~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~  162 (354)
T 3ly1_A           87 AYASLEAQLVIPELTYGDGE----HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADV  162 (354)
T ss_dssp             HHCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHH
T ss_pred             HHhCCCCeEEECCCCchHHH----HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHH
Confidence            67899999999999999986    4556788999999987     8999999998  78999999999999999999888


Q ss_pred             HHHHHHH--cCCEEEEeCCcCCccccC----c----cCC-CCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh
Q 022194          161 IAEMAHA--HGALLLVDNSIMSPVLSR----P----LEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (301)
Q Consensus       161 l~~l~~~--~~~~li~D~~~~~~~~~~----~----~~~-~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~  229 (301)
                      +.++++.  +|+++|+|++|+......    .    ... +.++++.|+||++ |.+|++.|+++++ +.+.+.+.....
T Consensus       163 l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~~~~~~~  240 (354)
T 3ly1_A          163 IEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIH-AMAGMRVGYAVAH-PTVIALMGRYVA  240 (354)
T ss_dssp             HHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTT-CCGGGCCEEEECC-HHHHHHHGGGTT
T ss_pred             HHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhc-cChhhhheeeecC-HHHHHHHHHhcC
Confidence            8888777  999999999998554431    1    122 6779999999999 6677889999986 456565544433


Q ss_pred             hcCCCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          230 AEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .  .+.++..+.++...++.   +.+.++++.++++++.+.|+++
T Consensus       241 ~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  283 (354)
T 3ly1_A          241 G--EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL  283 (354)
T ss_dssp             C--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            3  56667666666555554   5667778888888899988875

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.94  E-value=1e-25  Score=201.59  Aligned_cols=250  Identities=14%  Similarity=0.142  Sum_probs=171.6

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC-----CceEEecchHHHHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA-----DRALCFTSGMAALA   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~-----~~~i~~~sG~~ai~   84 (301)
                      .+++|+++...++  .+|.+.........  ......|.+. |.+. ++++.+++.+.+|.     ++++++++|++++.
T Consensus        38 ~~idl~~g~~~~~--~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~  113 (412)
T 2x5d_A           38 DIIDLSMGNPDGP--TPPHIVEKLCTVAQ--REDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLA  113 (412)
T ss_dssp             CCEECSSCCCCSC--CCHHHHHHHHHTC-----------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHH
T ss_pred             CEEecCCCCCCCC--CCHHHHHHHHHHHh--CCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHH
Confidence            5789985444444  34544443211111  1112345433 4443 66666666655563     35666667789986


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                       ++..++++||+|+++.|.|+++..    .++..|.+++.++.+       |++++++++++++++|++++|+||||.+.
T Consensus       114 ~~~~~~~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~  189 (412)
T 2x5d_A          114 HLMLATLDHGDTILVPNPSYPIHIY----GAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCV  189 (412)
T ss_dssp             HHHHHHCCTTCEEEEEESCCHHHHH----HHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCC
T ss_pred             HHHHHhCCCCCEEEEcCCCchhHHH----HHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcC
Confidence             566678899999999999999874    344567888887764       46888888888899999999999999997


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCcccc-----CccC----CCCcEEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       157 ~---l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~~~----~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                      +   +++|+++|++||+++|+||+|+.+.+.     ....    .+.++++.|+||++ |++|++.|+++++ +.+.+.+
T Consensus       190 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l  267 (412)
T 2x5d_A          190 ELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSY-NMAGWRIGFMVGN-PELVSAL  267 (412)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CC-SCTTSCCEEEEEC-HHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCcccc-CCcccceEEEEcC-HHHHHHH
Confidence            5   788999999999999999999875542     1111    36789999999999 5567889999986 4566666


Q ss_pred             HHhhhhcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          225 YFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .......+.+.++..+.++...++    .+.+.++++.++++.+.+.|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (412)
T 2x5d_A          268 ARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA  318 (412)
T ss_dssp             HHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            655555555666666655544443    25666777888888888888764

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.94  E-value=1.5e-25  Score=198.97  Aligned_cols=249  Identities=14%  Similarity=0.175  Sum_probs=175.7

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----Cc-eEEecchHHHHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----DR-ALCFTSGMAALA   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~-~i~~~sG~~ai~   84 (301)
                      .+++|++....++  .+|.+........+   .....|... |.+. ++++.+++.+.+|.    ++ ++++++|++++.
T Consensus        27 ~~i~l~~~~~~~~--~~~~v~~a~~~~~~---~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~  101 (389)
T 1gd9_A           27 DVISLGIGEPDFD--TPQHIKEYAKEALD---KGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFL  101 (389)
T ss_dssp             SCEECCCCSCSSC--CCHHHHHHHHHHHH---TTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHH
T ss_pred             CeEecCCCCCCCC--CCHHHHHHHHHHHh---CCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHH
Confidence            5788874443344  34434332211110   112345543 4444 66777777666663    35 666677789986


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                       ++..++++||+|++++|.|+++..    .++..|.+++.++.+       |++++++++++++++|++++|+||||.+.
T Consensus       102 ~~~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~  177 (389)
T 1gd9_A          102 MGLSAFLKDGEEVLIPTPAFVSYAP----AVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVL  177 (389)
T ss_dssp             HHHTTTCCTTCEEEEEESCCTTHHH----HHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             HHHHHhCCCCCEEEEcCCCchhHHH----HHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCC
Confidence             555668899999999999999874    445567888877743       78999999988899999999999999997


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCccccC-----ccC----CCCcEEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       157 ~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~~~----~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                      +   +++|+++|++||+++|+||+|+.+.+..     ...    .+.|+++.|+||++ |++|++.|+++++ +.+.+.+
T Consensus       178 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l  255 (389)
T 1gd9_A          178 TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF-AMTGWRLGFVAAP-SWIIERM  255 (389)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT-TCGGGCCEEEECC-HHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhc-CCcccceEEEEEC-HHHHHHH
Confidence            4   9999999999999999999998765421     111    35689999999999 5678889999987 4566666


Q ss_pred             HHhhhhcCCCCCHHhHHHHHccccc------HHHHHHHHHHHHHHHHHHHHhC
Q 022194          225 YFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .........+.++..+.++...++.      +.+.++++.++++.+.+.|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  308 (389)
T 1gd9_A          256 VKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM  308 (389)
T ss_dssp             HHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6555544556666666665555543      3455567778888888888875

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.94  E-value=1.6e-25  Score=197.22  Aligned_cols=247  Identities=15%  Similarity=0.170  Sum_probs=174.3

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~~~~~   88 (301)
                      ..+++|++..+.+|  .+|.+.........    ....|.   .+...++++.++++++.+  +++++++|++++.++..
T Consensus        24 ~~~idl~~~~~~~~--~~~~v~~a~~~~~~----~~~~y~---~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~   94 (364)
T 1lc5_A           24 DQLLDFSANINPLG--MPVSVKRALIDNLD----CIERYP---DADYFHLHQALARHHQVPASWILAGNGETESIFTVAS   94 (364)
T ss_dssp             GGSEECSSCCCTTC--CCHHHHHHHHHTGG----GGGSCC---CTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred             cceEEeccccCCCC--CCHHHHHHHHHHHH----HhhcCC---CCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHH
Confidence            35889984443455  34444433211111    112333   233678888888888865  44555555799875555


Q ss_pred             ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCC------HHHHHhhcCCCceEEEEeCCCCCcccccc---HH
Q 022194           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD------LDEVASAIGPWTKLVWVESPTNPRQQICD---IR  159 (301)
Q Consensus        89 ~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d------~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~  159 (301)
                      .+ +||+|+++.|.|+++.    ..++..|.+++.++.+.      ++++.+.+.+++++|++++|+||||.+.+   ++
T Consensus        95 ~~-~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~  169 (364)
T 1lc5_A           95 GL-KPRRAMIVTPGFAEYG----RALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQ  169 (364)
T ss_dssp             HH-CCSEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHH
T ss_pred             Hc-CCCeEEEeCCCcHHHH----HHHHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHH
Confidence            55 7899999999999987    44456788888888652      35566666678899999999999999987   89


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCcccc--C----ccCCCCcEEEecccccccCCCCceeeEEE-EcchhHHHHHHHhhhhcC
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVLS--R----PLELGADIVMHSATKFIAGHSDVMAGVLA-VKGERLAKELYFLQNAEG  232 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~~--~----~~~~~~di~~~S~sK~~~g~~g~~~g~~~-~~~~~~~~~~~~~~~~~~  232 (301)
                      +|+++|+++|+++|+||+|+.+.+.  .    ....+.++++.|+||++ |++|++.|+++ .+ +.+.+.+.....  .
T Consensus       170 ~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~~l~~~~~--~  245 (364)
T 1lc5_A          170 AIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSD-DAAMARMRRQQM--P  245 (364)
T ss_dssp             HHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCC-HHHHHHHHHHSC--T
T ss_pred             HHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhh-cCCccceEEEEECC-HHHHHHHHHhCC--C
Confidence            9999999999999999999865431  1    12346789999999999 55678899999 65 556565544332  4


Q ss_pred             CCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          233 SGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       233 ~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      ++.++..++++...++.   +.+.++++.++++++.+.|++++++.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  291 (364)
T 1lc5_A          246 WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLT  291 (364)
T ss_dssp             TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence            55677777777666665   45666777888888999998876654

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.94  E-value=3.2e-26  Score=205.56  Aligned_cols=256  Identities=16%  Similarity=0.166  Sum_probs=181.5

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC----CceEEecchHHHHH-H
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA----DRALCFTSGMAALA-A   85 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~   85 (301)
                      ..+++|+.....++  .+|.+........   ....+.|.....+.++++++++++.++.    ++++++++|++|+. +
T Consensus        61 ~~~i~~~~~~~~~~--~~~~v~~a~~~~~---~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a  135 (421)
T 3l8a_A           61 PELLQMWVADMDFL--PVPEIKEAIINYG---REHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIA  135 (421)
T ss_dssp             TTCEECCSSCCCSC--CCHHHHHHHHHHH---HHCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHH
T ss_pred             CCeeecccCCCCCC--CCHHHHHHHHHHH---hcCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHH
Confidence            46788874433333  4454443321111   1133455554434488899999988872    24555566678986 6


Q ss_pred             HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--------CHHHHHhhcC-CCceEEEEeCCCCCcccc-
Q 022194           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIG-PWTKLVWVESPTNPRQQI-  155 (301)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~-~~~~~v~i~~~~np~G~~-  155 (301)
                      +..++++||+|+++.|.|+++.    ..+...|.+++.++.+        |+++++++++ +++++|++++|+||+|.+ 
T Consensus       136 ~~~~~~~gd~Vi~~~~~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~  211 (421)
T 3l8a_A          136 LQAFSEKGDAVLINSPVYYPFA----RTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVW  211 (421)
T ss_dssp             HHHHSCTEEEEEEEESCCHHHH----HHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCC
T ss_pred             HHHhcCCCCEEEECCCCcHHHH----HHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcC
Confidence            6667889999999999999987    4445678888887753        8999999998 789999999999999998 


Q ss_pred             --ccHHHHHHHHHHcCCEEEEeCCcCCccccC-----c-----cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          156 --CDIRKIAEMAHAHGALLLVDNSIMSPVLSR-----P-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       156 --~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~-----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                        .++++|+++|++||+++|+||+|+...+..     .     ...+.++++.|+||++ |++|++.|+++++++.+.+.
T Consensus       212 ~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~~~G~~~~~~~~l~~~  290 (421)
T 3l8a_A          212 DNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTF-NIAGTKNSFAIIQNESLRRK  290 (421)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHH-TCGGGCCEEEECCSHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhc-cCchhheEeEEcCCHHHHHH
Confidence              469999999999999999999997543321     1     1135669999999999 55678899999986677776


Q ss_pred             HHHhhhhcC-CCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHhCCCcce
Q 022194          224 LYFLQNAEG-SGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKK  276 (301)
Q Consensus       224 ~~~~~~~~~-~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~v~~  276 (301)
                      +.......+ .+.++..+.++...++    .+.+..+++.++.+++.+.|++++++..
T Consensus       291 ~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~  348 (421)
T 3l8a_A          291 FQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKV  348 (421)
T ss_dssp             HHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEE
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence            665543333 3556666555544433    3566677788888889999987666543

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.94  E-value=1.5e-25  Score=199.41  Aligned_cols=250  Identities=18%  Similarity=0.173  Sum_probs=180.4

Q ss_pred             cceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC-----C-ceEEecchHH
Q 022194           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA-----D-RALCFTSGMA   81 (301)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~-----~-~~i~~~sG~~   81 (301)
                      ...+++|++....++  .+|.+........+    ....|.+. |.+. ++++.+++++.+|.     + +++++++|++
T Consensus        29 g~~~i~l~~~~~~~~--~~~~v~~a~~~~~~----~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~  102 (396)
T 3jtx_A           29 GMEAVPLHIGEPKHP--TPKVITDALTASLH----ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSRE  102 (396)
T ss_dssp             TCCCEECSCCSCCSC--CCHHHHHHHHHTGG----GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHH
T ss_pred             CCCeEEeCCcCCCCC--CCHHHHHHHHHHhh----hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHH
Confidence            357899984443444  34544433211111    23455554 5544 88888888887763     3 4555566678


Q ss_pred             HHH-HHHhccCCC-----CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCC
Q 022194           82 ALA-AVTHLLGTG-----EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPT  149 (301)
Q Consensus        82 ai~-~~~~~~~~g-----~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~  149 (301)
                      ++. ++..++++|     |+|+++.|.|+++.    ..++..|.+++.++.+      |++++++++.+++++|++++|+
T Consensus       103 al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~  178 (396)
T 3jtx_A          103 ALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYE----GATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPN  178 (396)
T ss_dssp             HHHHHHHHHCCC---CCCCEEEEEESCCHHHH----HHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSC
T ss_pred             HHHHHHHHHhCCCCccCCCEEEEcCCCcHhHH----HHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCC
Confidence            986 566778886     79999999999886    4556778888888853      6788888888889999999999


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC--cc-----------CCCCcEEEecccccccCCCCceeeEE
Q 022194          150 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--PL-----------ELGADIVMHSATKFIAGHSDVMAGVL  213 (301)
Q Consensus       150 np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~--~~-----------~~~~di~~~S~sK~~~g~~g~~~g~~  213 (301)
                      ||||.+.+   +++|+++|++||+++|+||+|+...+..  +.           ..+.++++.|+||.+ +.+|++.|++
T Consensus       179 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~  257 (396)
T 3jtx_A          179 NPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS-NVPGLRSGFV  257 (396)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTS-SCGGGCCEEE
T ss_pred             CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecccccc-CCcccceEEE
Confidence            99999986   5559999999999999999998654432  11           257889999999998 5568899999


Q ss_pred             EEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc---ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          214 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.+ +.+.+.+.......+.+.++..+.++...+   +.+.+.++++.++.+.+.+.|+++
T Consensus       258 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  317 (396)
T 3jtx_A          258 AGD-AELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV  317 (396)
T ss_dssp             EEC-HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EeC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            876 456666666666666667776666654444   345677778888888899988775

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.94  E-value=8.2e-26  Score=199.09  Aligned_cols=253  Identities=17%  Similarity=0.202  Sum_probs=180.4

Q ss_pred             CCccceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC---CceEEecchHHHH
Q 022194            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAAL   83 (301)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~---~~~i~~~sG~~ai   83 (301)
                      ++....+++|++..+.++  .+|.+.........  .   ..+..++.+...++++++++++|.   ++++++++|++++
T Consensus        26 ~~~~~~~i~l~~~~~~~~--~~~~v~~a~~~~~~--~---~~~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~   98 (367)
T 3euc_A           26 VPDSHGLVKLDAMENPYR--LPPALRSELAARLG--E---VALNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEII   98 (367)
T ss_dssp             CCCCTTCEECCSSCCCCC--CCHHHHHHHHHHHH--H---HHTTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHH
T ss_pred             CCCCCCeeEccCCCCCCC--CCHHHHHHHHHHhh--h---hhhhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHH
Confidence            334467899984443444  34444433211100  0   011222334578999999999987   3455555567898


Q ss_pred             H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcCC-CceEEEEeCCCCCccccc
Q 022194           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-~~~~v~i~~~~np~G~~~  156 (301)
                      . ++..++++||+|+++.|.|+++.    ..++..|.+++.++.+     |++++++++++ ++++|++++|+||||.+.
T Consensus        99 ~~~~~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~  174 (367)
T 3euc_A           99 SMLALAAARPGAKVMAPVPGFVMYA----MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLF  174 (367)
T ss_dssp             HHHHHHTCCTTCEEEEEESCSCCSC----HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCC
T ss_pred             HHHHHHHcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCC
Confidence            6 56667899999999999999986    4556788999888854     89999999987 899999999999999996


Q ss_pred             ---cHHHHHHHHHHc--CCEEEEeCCcCCcccc----CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh
Q 022194          157 ---DIRKIAEMAHAH--GALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (301)
Q Consensus       157 ---~l~~l~~l~~~~--~~~li~D~~~~~~~~~----~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~  227 (301)
                         ++++|+++|++|  |+++|+||+|+.....    .....+.++++.|+||+  +.+|++.|+++++ +.+.+.+...
T Consensus       175 ~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~--~~~G~r~G~~~~~-~~~~~~~~~~  251 (367)
T 3euc_A          175 DAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL--GLAGIRLGYVAGD-PQWLEQLDKV  251 (367)
T ss_dssp             CHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT--TSCSCCEEEEEEC-HHHHHHHGGG
T ss_pred             CHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh--cccccCceeeeeC-HHHHHHHHHh
Confidence               478888889999  9999999999853322    22234677999999999  4567899999986 4555544333


Q ss_pred             hhhcCCCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          228 QNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      ..  .++.++..++++...++.   +.++++++.++++++.+.|+++|++.
T Consensus       252 ~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~  300 (367)
T 3euc_A          252 RP--PYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVT  300 (367)
T ss_dssp             CC--SSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred             CC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence            32  345666666666555544   56677888888999999999887764

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.94  E-value=1.5e-25  Score=201.52  Aligned_cols=213  Identities=17%  Similarity=0.108  Sum_probs=159.5

Q ss_pred             HHHHHHHHHhhcC-------CCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDK-------ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~-------~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      ..++++.++++++       .+++++++||++|+. ++..++++||+|++++|.|+++.    ..++..|.+++.++.+ 
T Consensus        98 ~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~  173 (427)
T 3dyd_A           98 FLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYK----TLAESMGIEVKLYNLLP  173 (427)
T ss_dssp             CHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEEEEG
T ss_pred             cHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHH----HHHHHcCCEEEEEeccc
Confidence            4566666666665       336666777789996 66667889999999999999886    5556778888887753 


Q ss_pred             ------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcccc-----CccCCC---
Q 022194          128 ------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELG---  190 (301)
Q Consensus       128 ------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~~~~~---  190 (301)
                            |++++++.+++++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+...+.     .....+   
T Consensus       174 ~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~  253 (427)
T 3dyd_A          174 EKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDV  253 (427)
T ss_dssp             GGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSC
T ss_pred             ccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCC
Confidence                  899999999988999999999999999998   999999999999999999999864432     111122   


Q ss_pred             CcEEEecccccccCCCCceeeEEEEcc------hhHHHHHHHhhhhcCCCCCHHhHHHHHcccc-----cHHHHHHHHHH
Q 022194          191 ADIVMHSATKFIAGHSDVMAGVLAVKG------ERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQD  259 (301)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~  259 (301)
                      ..+++.|+||.| +.+|+|.|++++++      +.+.+.+...... ..+.++..+.++...++     .+.+.++++.+
T Consensus       254 ~vi~~~S~sK~~-~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~  331 (427)
T 3dyd_A          254 PILSCGGLAKRW-LVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKS  331 (427)
T ss_dssp             CEEEEEESTTTS-SCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             cEEEEeeccccC-CCcCcceEEEEecCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            348889999998 55788999999875      3455544443322 24455555555544443     35667788888


Q ss_pred             HHHHHHHHHHhCCCcc
Q 022194          260 NAQKIAEFLASHPRVK  275 (301)
Q Consensus       260 ~~~~l~~~l~~~~~v~  275 (301)
                      +++.+.+.|+++|++.
T Consensus       332 ~~~~l~~~L~~~~g~~  347 (427)
T 3dyd_A          332 NADLCYGALAAIPGLR  347 (427)
T ss_dssp             HHHHHHHHHHHSTTEE
T ss_pred             HHHHHHHHHhcCCCce
Confidence            8999999999887764

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.94  E-value=3.8e-25  Score=195.87  Aligned_cols=246  Identities=17%  Similarity=0.155  Sum_probs=175.9

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHh
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTH   88 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~   88 (301)
                      .+++|+++...++  .+|.+.........  .  ...|...  ....++++.++++++.+  +++++++|++++. ++..
T Consensus        26 ~~i~l~~~~~~~~--~~~~v~~a~~~~~~--~--~~~y~~~--~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~   97 (381)
T 1v2d_A           26 GAVNLGQGFPSNP--PPPFLLEAVRRALG--R--QDQYAPP--AGLPALREALAEEFAVEPESVVVTSGATEALYVLLQS   97 (381)
T ss_dssp             TCEECCCCSCSSC--CCHHHHHHHHHHTT--T--SCSCCCT--TCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred             CeEEecCCCCCCC--CCHHHHHHHHHHHH--H--hcCCCCC--CCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHH
Confidence            4788884433344  34444433222111  1  2234332  12578888888888865  5666677789986 5566


Q ss_pred             ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--------CHHHHHhhcCCCceEEEEeCCCCCcccccc---
Q 022194           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---  157 (301)
Q Consensus        89 ~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---  157 (301)
                      ++++||+|++++|.|+++.    ..++..|.+++.++.+        |++++++++++++++|++++|+||||.+.+   
T Consensus        98 ~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~  173 (381)
T 1v2d_A           98 LVGPGDEVVVLEPFFDVYL----PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERE  173 (381)
T ss_dssp             HCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred             hCCCCCEEEEcCCCchhHH----HHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHH
Confidence            7889999999999999987    3455678888887753        789999999888999999999999999975   


Q ss_pred             HHHHHHHHHHcCCEEEEeCCcCCcccc----Ccc--CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhc
Q 022194          158 IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  231 (301)
Q Consensus       158 l~~l~~l~~~~~~~li~D~~~~~~~~~----~~~--~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~  231 (301)
                      +++|+++|+++|+++|+||+|+.+.+.    ...  ..+.|+++.|+||++ |++|++.|++++++ .+.+.+.......
T Consensus       174 l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~~~~~~~~~  251 (381)
T 1v2d_A          174 LEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRL-EATGYRVGWIVGPK-EFMPRLAGMRQWT  251 (381)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHT-TCGGGCCEEEECCT-TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhc-CCcccceEEEEeCH-HHHHHHHHHHhhc
Confidence            899999999999999999999865432    111  347899999999999 55678899999875 4556555544444


Q ss_pred             CCCCCHHhHHHHHcccc------cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          232 GSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       232 ~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..+.++..+.++...++      .+.+.++++.++++++.+.|++.
T Consensus       252 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  297 (381)
T 1v2d_A          252 SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM  297 (381)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            45555555544444333      34566777888888999999874

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.94  E-value=1.2e-24  Score=195.62  Aligned_cols=221  Identities=18%  Similarity=0.220  Sum_probs=164.1

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC----------ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhh
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD----------RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR  112 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~----------~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~  112 (301)
                      ..|++. |.+. ++++.+++++.+|.+          +.+++++| ++++. ++..++++||+|++++|.|+++.    .
T Consensus        72 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~  147 (425)
T 2r2n_A           72 LQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTL----Q  147 (425)
T ss_dssp             TSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHH----H
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----H
Confidence            356655 7766 888888888877743          35666555 68886 66667899999999999999986    4


Q ss_pred             hcccCCcEEEEecCC----CHHHHHhhcC------------CCceEEEE-eCCCCCcccccc---HHHHHHHHHHcCCEE
Q 022194          113 VTPKTGVVVKRVNTC----DLDEVASAIG------------PWTKLVWV-ESPTNPRQQICD---IRKIAEMAHAHGALL  172 (301)
Q Consensus       113 ~~~~~g~~~~~~~~~----d~~~l~~~l~------------~~~~~v~i-~~~~np~G~~~~---l~~l~~l~~~~~~~l  172 (301)
                      .++..|.+++.++.+    |+++++++++            +++++|++ ++|+||||.+.+   +++|+++|++||+++
T Consensus       148 ~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~l  227 (425)
T 2r2n_A          148 SLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLI  227 (425)
T ss_dssp             HHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            556778888888763    7889998886            35788876 689999999987   558999999999999


Q ss_pred             EEeCCcCCcccc-----Cc---cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHH
Q 022194          173 LVDNSIMSPVLS-----RP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (301)
Q Consensus       173 i~D~~~~~~~~~-----~~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (301)
                      |+||+|+...+.     ..   ...+.++++.|+||++ + +|+|.|++++++ .+.+.+.........+.++..+.++.
T Consensus       228 i~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~-~-~GlRiG~~~~~~-~l~~~l~~~~~~~~~~~~~~~q~a~~  304 (425)
T 2r2n_A          228 IEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKII-S-SGLRIGFLTGPK-PLIERVILHIQVSTLHPSTFNQLMIS  304 (425)
T ss_dssp             EEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTT-C-STTCCEEEEEEH-HHHHHHHHHHHTTTCSSCHHHHHHHH
T ss_pred             EEECCcccccCCCCCCCCccccCCCCCEEEEccchhhc-c-CccceEEEecCH-HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            999999743321     11   1235679999999999 5 689999999885 46666665555555666776666655


Q ss_pred             ccccc---------HHHHHHHHHHHHHHHHHHHHh-CCCc
Q 022194          245 RGVKT---------MALRVEKQQDNAQKIAEFLAS-HPRV  274 (301)
Q Consensus       245 ~~l~~---------~~~~~~~~~~~~~~l~~~l~~-~~~v  274 (301)
                      ..++.         +.+.++.+.++++.+.+.|++ .+++
T Consensus       305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  344 (425)
T 2r2n_A          305 QLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGL  344 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            55443         344556677778888888877 4554

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.94  E-value=8.5e-25  Score=194.72  Aligned_cols=254  Identities=13%  Similarity=0.157  Sum_probs=176.1

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCch-HHHHHHHHHhhcC--C--CceEEecchHHHHH-
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPT-RDALESLLAKLDK--A--DRALCFTSGMAALA-   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~-~~~l~~~l~~~~~--~--~~~i~~~sG~~ai~-   84 (301)
                      ..+++|++ ++ .+...+|.+.........   .....|... .+. ++++.+++++.+|  .  ++++++++|++|+. 
T Consensus        31 ~~~i~l~~-~~-~~~~~~~~v~~a~~~~~~---~~~~~y~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~  104 (399)
T 1c7n_A           31 NEVVPLSV-AD-MEFKNPPELIEGLKKYLD---ETVLGYTGP-TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFN  104 (399)
T ss_dssp             TTCCCCCS-SS-CSSCCCHHHHHHHHHHHH---HCCCSSBCC-CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHH
T ss_pred             CCceeeee-cC-CCCCCCHHHHHHHHHHHh---cCCCCCCCC-cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHH
Confidence            35778873 33 233344544433211110   112344432 333 6666666666666  2  35556666679986 


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC--------CCHHHHHhhcC-CCceEEEEeCCCCCcccc
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~-~~~~~v~i~~~~np~G~~  155 (301)
                      ++..++++||+|+++.|.|+++.    ..+...|.+++.++.        .|+++++++++ .++++|++++|+||||.+
T Consensus       105 ~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~  180 (399)
T 1c7n_A          105 AVREFTKPGDGVIIITPVYYPFF----MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRV  180 (399)
T ss_dssp             HHHHHCCTTCEEEECSSCCTHHH----HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBC
T ss_pred             HHHHhcCCCCEEEEcCCCcHhHH----HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcC
Confidence            56667889999999999999987    444567888888775        37899999998 689999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCCcCCcccc-----CccC-----CCCcEEEecccccccCCCCceeeEEEEcchhHHH
Q 022194          156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (301)
Q Consensus       156 ~~---l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~~~-----~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~  222 (301)
                      .+   +++|+++|+++|+++|+||+|+...+.     ....     .+.++++.|+||++ |++|++.|+++++++.+.+
T Consensus       181 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~  259 (399)
T 1c7n_A          181 WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF-NIAGMGMSNIIIKNPDIRE  259 (399)
T ss_dssp             CCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhc-cccchheEEEEECCHHHHH
Confidence            88   999999999999999999999865432     1111     25679999999999 5567889999998666767


Q ss_pred             HHHHhhhhcCC-CCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHh-CCCcc
Q 022194          223 ELYFLQNAEGS-GLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLAS-HPRVK  275 (301)
Q Consensus       223 ~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~-~~~v~  275 (301)
                      .+.......+. +.++..++++...++    .+.+.++++.++++++.+.|++ +|++.
T Consensus       260 ~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  318 (399)
T 1c7n_A          260 RFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIK  318 (399)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSB
T ss_pred             HHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCe
Confidence            66655554432 456655555444432    3456667788888889999987 66653

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.94  E-value=3.1e-25  Score=199.03  Aligned_cols=219  Identities=21%  Similarity=0.260  Sum_probs=172.1

Q ss_pred             CCchHHHHHHHHHhhcCCCceEE---ecchHHHHH-HHHhccCCCCeEEEcC-CCCccHHHHHh------hhcccCCcEE
Q 022194           53 GNPTRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLLS------RVTPKTGVVV  121 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~---~~sG~~ai~-~~~~~~~~g~~Vlv~~-~~y~~~~~~~~------~~~~~~g~~~  121 (301)
                      +.+.++++++.+++++|.+..++   ++||++|+. ++.+++++||+|++++ +.|..+...+.      ..++..|+++
T Consensus        63 ~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~  142 (431)
T 3ht4_A           63 DDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGY  142 (431)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEE
T ss_pred             ChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEE
Confidence            34558999999999999986665   789999986 6677899999999998 89998865432      4556789999


Q ss_pred             EEecCC-----CHHHHHhhcCCCceEEEEeC-CCCCccc---cccHHHHHHHHHH--cCCEEEEeCCcCCccc-cCccCC
Q 022194          122 KRVNTC-----DLDEVASAIGPWTKLVWVES-PTNPRQQ---ICDIRKIAEMAHA--HGALLLVDNSIMSPVL-SRPLEL  189 (301)
Q Consensus       122 ~~~~~~-----d~~~l~~~l~~~~~~v~i~~-~~np~G~---~~~l~~l~~l~~~--~~~~li~D~~~~~~~~-~~~~~~  189 (301)
                      +.++.+     |++++++++++++++|++++ |+||+|.   ..++++|+++|++  +|+++|+|++|+.+.. ..+...
T Consensus       143 ~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~  222 (431)
T 3ht4_A          143 NAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHV  222 (431)
T ss_dssp             EECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGT
T ss_pred             EEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcccc
Confidence            999974     89999999999999999995 6666554   4679999999999  9999999999998874 466777


Q ss_pred             CCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcC--C--CCCHHhHHHHHcccccHHHHHHHHHHHHHHHH
Q 022194          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG--S--GLAPFDCWICLRGVKTMALRVEKQQDNAQKIA  265 (301)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~  265 (301)
                      ++|++++|++|+++|..+..+|+++++ +.+.+.+.......+  .  +.+....+.+.++++.+..++++..++++++.
T Consensus       223 g~Di~~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~l~  301 (431)
T 3ht4_A          223 GADLMAGSLIKNPGGGIVKTGGYIVGK-EQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFTA  301 (431)
T ss_dssp             TCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEcCccccCCCCCCCceEEEEec-HHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence            899999999999977444456999887 455565554333322  1  12222245566777777888899999999999


Q ss_pred             HHHHhCC
Q 022194          266 EFLASHP  272 (301)
Q Consensus       266 ~~l~~~~  272 (301)
                      +.|++++
T Consensus       302 ~~L~~~g  308 (431)
T 3ht4_A          302 AFLEKLG  308 (431)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhCc
Confidence            9999865

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.94  E-value=2.8e-25  Score=199.76  Aligned_cols=252  Identities=19%  Similarity=0.205  Sum_probs=173.0

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----C-ceEEecchHHHHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----D-RALCFTSGMAALA   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~-~~i~~~sG~~ai~   84 (301)
                      .+++|+.....+|  .+|.+.................|... |.+. ++++.+++.+.+|.    + +++++++|++++.
T Consensus        38 ~~i~l~~~~~~~~--~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~  115 (429)
T 1yiz_A           38 KPLNLGQGFPDYH--APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY  115 (429)
T ss_dssp             CCEECCSSSCSSC--CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred             CEEEecCCCCCCC--CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHH
Confidence            5788884333345  34544433211111000022345544 4444 67777777766663    3 4555555579986


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC---------------CCHHHHHhhcCCCceEEEEeCC
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---------------CDLDEVASAIGPWTKLVWVESP  148 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~---------------~d~~~l~~~l~~~~~~v~i~~~  148 (301)
                       ++..++++||+|+++.|.|+++..    .++..|.+++.++.               .|++++++++++++++|++++|
T Consensus       116 ~~~~~~~~~gd~Vl~~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p  191 (429)
T 1yiz_A          116 ATIQGHVDEGDEVIIIEPFFDCYEP----MVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTP  191 (429)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESS
T ss_pred             HHHHHhcCCCCEEEEcCCCchhHHH----HHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCC
Confidence             556678899999999999999874    34456777777764               3689999999888999999999


Q ss_pred             CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcccc-----Cc--c--CCCCcEEEecccccccCCCCceeeEEEEc
Q 022194          149 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP--L--ELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (301)
Q Consensus       149 ~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~--~--~~~~di~~~S~sK~~~g~~g~~~g~~~~~  216 (301)
                      +||||.+.+   +++|+++|++||+++|+||+|+...+.     ..  .  ..++|+++.|+||++ |++|++.|+++++
T Consensus       192 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~  270 (429)
T 1yiz_A          192 HNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF-SLTGWKIGWAYGP  270 (429)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHH-TCGGGCCEEEESC
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhcc-CCCCcceEEEEeC
Confidence            999999985   999999999999999999999854331     11  1  346799999999999 5668899999987


Q ss_pred             chhHHHHHHHhhhhcCCCCCHHhHHHHHccc-----------ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          217 GERLAKELYFLQNAEGSGLAPFDCWICLRGV-----------KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      + .+.+.+.........+.++..+.++...+           +.+.+.++++.++++.+.+.|+++
T Consensus       271 ~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  335 (429)
T 1yiz_A          271 E-ALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV  335 (429)
T ss_dssp             H-HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4 56666655554444555555544443332           235666677788888888888765

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.94  E-value=4.3e-26  Score=200.74  Aligned_cols=244  Identities=13%  Similarity=0.191  Sum_probs=176.9

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~   87 (301)
                      ..+++|++..++++  .+|.+.........    ....|..   +...++++.++++++.+  ++++++||++++. ++.
T Consensus        30 ~~~i~l~~~~~~~~--~~~~v~~a~~~~~~----~~~~y~~---~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~  100 (365)
T 3get_A           30 KEVIKLASNENPFG--TPPKAIECLRQNAN----KAHLYPD---DSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIH  100 (365)
T ss_dssp             SCCEECSSCCCTTC--SCHHHHHHHHHHGG----GTTSCCC---TTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred             CceEEecCCCCCCC--CCHHHHHHHHHHHH----hhccCCC---CChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            46789985545566  34444433222111    1223332   22368899999999854  5666666789986 566


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-----CCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~  162 (301)
                      .++++||+|+++.|.|+++.    ..++..|.+++.++.     .|++++++++++++++|++++|+||||.+.++++|.
T Consensus       101 ~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~  176 (365)
T 3get_A          101 SKLNSKNAFLQAGVTFAMYE----IYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEAT  176 (365)
T ss_dssp             HHCCTTCEEEECSSCCTHHH----HHHHHHTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             HHhCCCCEEEEeCCChHHHH----HHHHHcCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHH
Confidence            67899999999999999886    455567889999986     367899999999999999999999999999988888


Q ss_pred             HHHH--HcCCEEEEeCCcCCccc-------cCc----cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh
Q 022194          163 EMAH--AHGALLLVDNSIMSPVL-------SRP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (301)
Q Consensus       163 ~l~~--~~~~~li~D~~~~~~~~-------~~~----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~  229 (301)
                      ++++  ++|+++|+|++|+.+.+       ...    ...+.++++.|+||++ |++|++.|+++++ +.+.+.+.....
T Consensus       177 ~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~~~~~~~  254 (365)
T 3get_A          177 EFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLY-GLGGLRIGYGIAN-ANIISAFYKLRA  254 (365)
T ss_dssp             HHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTT-SCTTTCCEEEEEC-HHHHHHHHHHSC
T ss_pred             HHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHh-cCcchheEEEEcC-HHHHHHHHHhcC
Confidence            8887  67999999999984431       111    1236789999999999 5667889999985 556665554433


Q ss_pred             hcCCCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          230 AEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .  ++.++..++++...++.   +.+.++++.++++++.+.|+++
T Consensus       255 ~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  297 (365)
T 3get_A          255 P--FNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH  297 (365)
T ss_dssp             T--TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             C--CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2  34666666555555443   5677788888889999999876

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.94  E-value=7.4e-25  Score=194.67  Aligned_cols=248  Identities=18%  Similarity=0.180  Sum_probs=173.4

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~   84 (301)
                      ..+++|+++...++.  +|.+........   ......|... |.+. ++++.+++.+.+|.    ++++++++|++++.
T Consensus        31 ~~~i~l~~g~~~~~~--~~~v~~a~~~~~---~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~  105 (391)
T 3h14_A           31 RRIIHMEVGQPGTGA--PRGAVEALAKSL---ETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFL  105 (391)
T ss_dssp             CCCEECCCSSCSSCS--CHHHHHHHHHHH---C----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred             CCeEEccCCCCCCCC--CHHHHHHHHHHH---hcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHH
Confidence            468899854444443  454433321111   1123455544 4444 77777777766552    35666677789986


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                       ++..++++||+|+++.|.|+++.    ..++..|.+++.++.+       |+++++++   ++++|++++|+||||.+.
T Consensus       106 ~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~  178 (391)
T 3h14_A          106 LAFTALFDSGDRVGIGAPGYPSYR----QILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTML  178 (391)
T ss_dssp             HHHHHHCCTTCEEEEEESCCHHHH----HHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCC
T ss_pred             HHHHHhcCCCCEEEEcCCCCccHH----HHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccC
Confidence             66677899999999999999887    4555778898888865       77888776   789999999999999998


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCccccC----ccC-CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh
Q 022194          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLSR----PLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  228 (301)
Q Consensus       157 ~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----~~~-~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~  228 (301)
                      +   +++|+++|+++|+++|+||+|+...+..    ... .+.++++.|+||++ |++|++.|++++++ .+.+.+....
T Consensus       179 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~-~~~~~~~~~~  256 (391)
T 3h14_A          179 DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYF-SMTGWRVGWMVVPE-DQVRVVERIA  256 (391)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTT-CCTTSCCEEEECCG-GGHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhcc-CCccceeEEEEeCH-HHHHHHHHHH
Confidence            7   8889999999999999999998654321    112 35679999999999 66788999999875 4666666666


Q ss_pred             hhcCCCCCHHhHHHHHccc---ccHHHHHHHHHHHHHHHHHHHHhCC
Q 022194          229 NAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      .....+.++..+.++...+   +.+.+.++++.++++.+.+.|++++
T Consensus       257 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~  303 (391)
T 3h14_A          257 QNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKAG  303 (391)
T ss_dssp             HHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6556666666655554433   3456677788888888999888753

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.94  E-value=3.5e-25  Score=192.71  Aligned_cols=244  Identities=14%  Similarity=0.135  Sum_probs=174.0

Q ss_pred             CCccceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecch-HHHHH
Q 022194            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALA   84 (301)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~   84 (301)
                      .+....+++|++..+++|.  +|.+.........    ....|   ..+...++++.++++++.+ +.+++++| ++++.
T Consensus        12 ~~~~~~~i~l~~n~~~~~~--~~~v~~a~~~~~~----~~~~y---~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~   82 (337)
T 3p1t_A           12 VRAAAQAVCLAFNENPEAV--EPRVQAAIAAAAA----RINRY---PFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFD   82 (337)
T ss_dssp             --CCCCCEECSSCCCCSCC--CHHHHHHHHHHGG----GTTSC---CTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHH
T ss_pred             ccCCCCceEeeCCCCCCCC--CHHHHHHHHHhhh----hhccC---CCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHH
Confidence            3444578999955577873  4555443222111    11223   3456889999999999876 46666666 58887


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~  159 (301)
                      ++...+ +||+|++++|.|+++.    ..++..|.+++.++.+     |+++++++  .+++++++++|+||||.+.|++
T Consensus        83 ~~~~~~-~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~  155 (337)
T 3p1t_A           83 RISAEF-SSMRFVTAWPGFDGYR----ARIAVSGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAG  155 (337)
T ss_dssp             HHHHHS-TTSEEEEESSSCSHHH----HHHTTSCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHhc-CCCeEEEeCCCcHHHH----HHHHHcCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHH
Confidence            666656 9999999999999986    5567789999998854     78888876  4679999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCcccc---CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCC
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
                      +|.++|+++++ +|+||+|......   .....+.++++.|+||++ |++|++.|++++++ .+.+.+....  ...+.+
T Consensus       156 ~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~~-~~~~~l~~~~--~~~~~~  230 (337)
T 3p1t_A          156 ELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSY-GLAGLRLGALFGPS-ELIAAMKRKQ--WFCNVG  230 (337)
T ss_dssp             HHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTT-CCTTTCCEEEECCH-HHHHHHHTTS--CTTCSC
T ss_pred             HHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhc-cCcchheEEEEeCH-HHHHHHHhhc--CCCCCC
Confidence            99999999997 5669999743221   122335789999999999 66788999999875 4555443332  234455


Q ss_pred             HHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          237 PFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       237 ~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .....++...++.   +.+.++++.++++++.+.|+++
T Consensus       231 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  268 (337)
T 3p1t_A          231 TLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL  268 (337)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            5555555444443   4566677777888899999876

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.94  E-value=7.8e-25  Score=194.45  Aligned_cols=253  Identities=16%  Similarity=0.215  Sum_probs=172.5

Q ss_pred             ceeeecCCCCCC-CCccccCeeecceeecCCCCCCCCccccCCCCc-hHHHHHHHHHhhcC--C--CceEEecchHHHHH
Q 022194           11 TLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNP-TRDALESLLAKLDK--A--DRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~-~~~~l~~~l~~~~~--~--~~~i~~~sG~~ai~   84 (301)
                      ..+++|+ .+++ ++  .+|.+.........   .....|...... .++++.+++.+.+|  .  ++++++++|++++.
T Consensus        28 ~~~i~l~-~~~~~~~--~~~~v~~a~~~~~~---~~~~~y~~~~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~  101 (390)
T 1d2f_A           28 ADLLPFT-ISDMDFA--TAPCIIEALNQRLM---HGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVS  101 (390)
T ss_dssp             --CEECC-SSSCSSC--CCHHHHHHHHHHHT---TCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHH
T ss_pred             CCeeEee-ecCCCCC--CCHHHHHHHHHHHh---CCCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHH
Confidence            3678887 3443 44  44544433222111   122344433233 45666666666656  2  34555566678986


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC--------CCHHHHHhhcCC-CceEEEEeCCCCCccc
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIGP-WTKLVWVESPTNPRQQ  154 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~-~~~~v~i~~~~np~G~  154 (301)
                       ++..++++||+|+++.|.|+++..    .++..|.+++.++.        .|++++++++++ ++++|++++|+||||.
T Consensus       102 ~~~~~l~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~  177 (390)
T 1d2f_A          102 ELIRQWSETGEGVVIHTPAYDAFYK----AIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGK  177 (390)
T ss_dssp             HHHHHSSCTTCEEEEEESCCHHHHH----HHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCC
T ss_pred             HHHHHhcCCCCEEEEcCCCcHHHHH----HHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCc
Confidence             566678899999999999999874    44566788887775        378999999985 7899999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCCcCCcccc-----CccCC--CC-cEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          155 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLEL--GA-DIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       155 ~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~~~~--~~-di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                      +.+   +++|+++|+++|+++|+||+|+.+.+.     .....  +. |. +.|+||++ |++|++.|+++++++.+.+.
T Consensus       178 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~-~~~G~r~G~~~~~~~~~~~~  255 (390)
T 1d2f_A          178 VWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSF-NIPALTGAYGIIENSSSRDA  255 (390)
T ss_dssp             CCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHH-TCGGGCCEEEEECSHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhh-cccChhheEEEECCHHHHHH
Confidence            976   899999999999999999999865432     11112  11 66 99999999 55788999999876667666


Q ss_pred             HHHhhh-hcC-CCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHh-CCCcc
Q 022194          224 LYFLQN-AEG-SGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLAS-HPRVK  275 (301)
Q Consensus       224 ~~~~~~-~~~-~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~-~~~v~  275 (301)
                      +..... ... ++.++..++++...++    .+.+.++++.++++.+.+.|++ +|++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  314 (390)
T 1d2f_A          256 YLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELN  314 (390)
T ss_dssp             HHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence            655544 333 2556665555444433    3456667788888889999987 66553

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.94  E-value=3.5e-25  Score=197.84  Aligned_cols=251  Identities=18%  Similarity=0.185  Sum_probs=174.7

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC-----CceEEecchHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA-----DRALCFTSGMAAL   83 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~-----~~~i~~~sG~~ai   83 (301)
                      ..+++|+.....++  .+|.+.........  ......|... |.+. ++++.+++.+.++.     ++++++++|++++
T Consensus        23 ~~~i~l~~~~~~~~--~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~   98 (410)
T 3e2y_A           23 PSVVNLGQGFPDIS--PPSYVKEELSKAAF--IDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSL   98 (410)
T ss_dssp             TTSEECSSCCCCSC--CCHHHHHHHHHHHT--CGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             CCeEEecCCCCCCC--CCHHHHHHHHHHHh--CccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence            46788884333333  33444333211111  1112245543 4443 66666766665542     3455555567998


Q ss_pred             H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----------------CHHHHHhhcCCCceEEEEe
Q 022194           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------------DLDEVASAIGPWTKLVWVE  146 (301)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----------------d~~~l~~~l~~~~~~v~i~  146 (301)
                      . ++..++++||+|+++.|.|+++.    ..++..|.+++.++.+                |++++++++++++++|+++
T Consensus        99 ~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~  174 (410)
T 3e2y_A           99 FNSIQGLVDPGDEVIIMVPFYDCYE----PMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILN  174 (410)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEE
T ss_pred             HHHHHHhcCCCCEEEEeCCCchhhH----HHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEe
Confidence            6 66667899999999999999987    4455677888777653                7899999999899999999


Q ss_pred             CCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCccccC-----c----cCCCCcEEEecccccccCCCCceeeEEE
Q 022194          147 SPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSR-----P----LELGADIVMHSATKFIAGHSDVMAGVLA  214 (301)
Q Consensus       147 ~~~np~G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~----~~~~~di~~~S~sK~~~g~~g~~~g~~~  214 (301)
                      +|+||||.+.   ++++|+++|++||+++|+||+|+...+..     .    ...+.++++.|+||++ |++|++.|+++
T Consensus       175 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~  253 (410)
T 3e2y_A          175 TPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTF-SVTGWKLGWSI  253 (410)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHS-SCGGGCCEEEE
T ss_pred             CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhc-CCCCceEEEEE
Confidence            9999999995   69999999999999999999997544321     1    1224569999999999 55678999999


Q ss_pred             EcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc-----------ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          215 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-----------KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +++ .+.+.+.........+.++..+.++...+           +.+.+..+++.++++.+.+.|+++
T Consensus       254 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  320 (410)
T 3e2y_A          254 GPA-HLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV  320 (410)
T ss_dssp             CCH-HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ECH-HHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            875 45565555555555556666655544433           235677788888899999999876

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.94  E-value=7.5e-25  Score=192.39  Aligned_cols=245  Identities=15%  Similarity=0.167  Sum_probs=176.6

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~~~~~   88 (301)
                      ..+++|+++.++++.  +|.+........+    ....|   ..+...+++++++++++.+  ++++++||++++.++..
T Consensus        26 ~~~idl~~~~~~~~~--~~~v~~a~~~~~~----~~~~y---~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~   96 (361)
T 3ftb_A           26 RELLDYSSNINPLGI--PKSFLNNIDEGIK----NLGVY---PDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSIS   96 (361)
T ss_dssp             --CEETTCCCCTTCS--CHHHHTTHHHHHH----GGGSC---CCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHT
T ss_pred             CCEEEecCCCCCCCC--CHHHHHHHHHHHH----HhcCC---CCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHH
Confidence            568999855566663  3444433211111    11223   2334688899999998854  45555666899986666


Q ss_pred             ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHH
Q 022194           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRK  160 (301)
Q Consensus        89 ~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~  160 (301)
                      .+   |+|+++.|.|+++.    ..++..|.+++.++.+     +++++++++++ +++|++++|+||||.+.+   +++
T Consensus        97 ~~---d~vi~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~  168 (361)
T 3ftb_A           97 LF---EKILIIVPSYAEYE----INAKKHGVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIH  168 (361)
T ss_dssp             TC---SEEEEEESCCTHHH----HHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHH
T ss_pred             Hc---CcEEEecCChHHHH----HHHHHcCCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHH
Confidence            66   89999999999987    4455678899888864     56899999988 999999999999999975   777


Q ss_pred             HHHHHHHcCCEEEEeCCcCCcccc---C----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCC
Q 022194          161 IAEMAHAHGALLLVDNSIMSPVLS---R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  233 (301)
Q Consensus       161 l~~l~~~~~~~li~D~~~~~~~~~---~----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~  233 (301)
                      |+++|++||+++|+||+|+.....   .    ....+.++++.|+||.+ |++|++.|+++..++.+.+.+.....  .+
T Consensus       169 i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~g~~~~~~~~~~~~~~~~~~--~~  245 (361)
T 3ftb_A          169 VLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFF-AMPGIRFGYGITNNKEIAAKIKAKQN--PW  245 (361)
T ss_dssp             HHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTT-SCGGGCCEEEEESCHHHHHHHHTTSC--TT
T ss_pred             HHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhc-CCCCcceeEEEeCCHHHHHHHHhhCC--CC
Confidence            888889999999999999754442   1    12234568999999999 55678899998556667665554333  34


Q ss_pred             CCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          234 GLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       234 ~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      +.++..++++...++.   +.++++++.++++++.+.|++++++.
T Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  290 (361)
T 3ftb_A          246 NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIK  290 (361)
T ss_dssp             CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEE
T ss_pred             CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            6677777777666654   45667778888899999999888765

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.94  E-value=1.3e-24  Score=194.40  Aligned_cols=249  Identities=18%  Similarity=0.234  Sum_probs=175.0

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~   84 (301)
                      ..+++|++....++  .+|.+.... ....   .....|... |.+. ++++.+++.+.+|.    +++++++||++|+.
T Consensus        43 ~~~i~l~~~~~~~~--~~~~v~~a~-~~l~---~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~  116 (409)
T 2gb3_A           43 VRIHHLNIGQPDLK--TPEVFFERI-YENK---PEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL  116 (409)
T ss_dssp             CEEEECSSCCCCSC--CCTHHHHHH-HHTC---CSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred             CCEEeccCCCCCCC--CCHHHHHHH-HHHh---cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHH
Confidence            36889983333344  345444443 2211   122345443 4433 66666666665542    35666677789986


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCC------HHHHHhhcCCCceEEEEeCCCCCccccc-
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD------LDEVASAIGPWTKLVWVESPTNPRQQIC-  156 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d------~~~l~~~l~~~~~~v~i~~~~np~G~~~-  156 (301)
                       ++..++++||+|++++|.|+++..    .++..|.+++.++.++      ++++++++++++++|++++|+||||.+. 
T Consensus       117 ~~~~~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p~nptG~~~~  192 (409)
T 2gb3_A          117 FSFAVIANPGDEILVLEPFYANYNA----FAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYG  192 (409)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTHHHH----HHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHhCCCCCEEEEcCCCchhHHH----HHHHcCCEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCCCCCCCCCcC
Confidence             566678899999999999998873    4456788888888652      6888888888899999999999999986 


Q ss_pred             --cHHHHHHHHHHcCCEEEEeCCcCCcccc----Ccc-C-CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh
Q 022194          157 --DIRKIAEMAHAHGALLLVDNSIMSPVLS----RPL-E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  228 (301)
Q Consensus       157 --~l~~l~~l~~~~~~~li~D~~~~~~~~~----~~~-~-~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~  228 (301)
                        ++++|+++|+++|+++|+||+|+.+.+.    ... . .+.|+++.|+||++ |++|++.|+++++++.+.+.+....
T Consensus       193 ~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~l~~~l~~~~  271 (409)
T 2gb3_A          193 KDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELISHAMKLA  271 (409)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhcc-CCccceEEEEEECcHHHHHHHHHHH
Confidence              4899999999999999999999865542    111 1 35799999999999 5577889999998745666665554


Q ss_pred             hhcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          229 NAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .... +.++..+.++...++    .+.+.++++.++++.+.+.|+++
T Consensus       272 ~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  317 (409)
T 2gb3_A          272 QGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH  317 (409)
T ss_dssp             HHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4443 556665555544443    24556677888888899988875

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.93  E-value=2.9e-25  Score=196.92  Aligned_cols=249  Identities=17%  Similarity=0.195  Sum_probs=174.2

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----C-ceEEecchHHHHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----D-RALCFTSGMAALA   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~-~~i~~~sG~~ai~   84 (301)
                      .+++|+.....++  .+|.+.........   .....|... |.+. ++++.+++.+.+|.    + +++++++|++++.
T Consensus        31 ~~i~l~~~~~~~~--~~~~v~~a~~~~~~---~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~  105 (386)
T 1u08_A           31 QAINLSQGFPDFD--GPRYLQERLAHHVA---QGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY  105 (386)
T ss_dssp             TCEECCCSSCSSC--CCHHHHHHHHHHHH---TTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred             CeEEecCCCCCCC--CCHHHHHHHHHHHH---hhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHH
Confidence            4788873332344  34444433211111   112345543 4444 67777777776663    3 4556666679986


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                       ++..++++||+|++++|.|+++.    ..++..|.+++.++.+      |++++++++++++++|++++|+||||.+.+
T Consensus       106 ~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~  181 (386)
T 1u08_A          106 AAITALVRNGDEVICFDPSYDSYA----PAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQ  181 (386)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHhCCCCCEEEEeCCCchhHH----HHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCC
Confidence             55667889999999999999987    4455678888888752      789999999888999999999999999975


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCcCCcccc-----Ccc----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHH
Q 022194          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (301)
Q Consensus       158 ---l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~  225 (301)
                         +++|+++|+++|+++|+||+|+...+.     ...    ..+.|+++.|+||++ |++|++.|++++++ .+.+.+.
T Consensus       182 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~l~  259 (386)
T 1u08_A          182 QADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTY-HMTGWKVGYCVAPA-PISAEIR  259 (386)
T ss_dssp             HHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHT-TCGGGCCEEEECCH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhc-CCcccceEEEEcCH-HHHHHHH
Confidence               788999999999999999999864331     111    246899999999999 56678899999874 5666665


Q ss_pred             HhhhhcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          226 FLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ........+.++..+.++...++    .+.+.++++.++++.+.+.|+++
T Consensus       260 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (386)
T 1u08_A          260 KVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES  309 (386)
T ss_dssp             HHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            55544445555555444444433    24566677788888888888765

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.93  E-value=6.7e-26  Score=200.35  Aligned_cols=249  Identities=16%  Similarity=0.125  Sum_probs=171.0

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc----CCC-----ceEEecchHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD----KAD-----RALCFTSGMA   81 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~----~~~-----~~i~~~sG~~   81 (301)
                      ..+++|+++...+|  .+|.+.........  ......|...  ....++++.+++++    |.+     +++++++|++
T Consensus        25 ~~~idl~~~~~~~~--~~~~v~~a~~~~~~--~~~~~~y~~~--~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~   98 (376)
T 2dou_A           25 VGLIDLSIGSTDLP--PPEAPLKALAEALN--DPTTYGYCLK--SCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE   98 (376)
T ss_dssp             CCCEECSSCCCCCC--CCHHHHHHHHHHTT--CGGGSSCCCH--HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred             CCEEeccCCCCCCC--CCHHHHHHHHHHHh--CCCcCCCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence            45889985444455  34544433222111  1112233321  12455555555544    764     4455555578


Q ss_pred             HHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-----CCHHHHHhhcCCCceEEEEeCCCCCcccc
Q 022194           82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        82 ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~v~i~~~~np~G~~  155 (301)
                      ++. ++..++++||+|++++|.|+++.    ..++..|.+++.++.     .|++++++++.+++++|++++|+||||.+
T Consensus        99 a~~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~  174 (376)
T 2dou_A           99 GLAHLLLALTEPEDLLLLPEVAYPSYF----GAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAV  174 (376)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCHHHH----HHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCC
T ss_pred             HHHHHHHHhcCCCCEEEECCCCcHhHH----HHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCcc
Confidence            985 66667889999999999999987    444567888888875     26788888887778999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCCcCCcccc----CccC----CCCcEEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       156 ~~---l~~l~~l~~~~~~~li~D~~~~~~~~~----~~~~----~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                      .+   +++|+++|+++|+++|+||+|+.+.+.    ....    .+.++++.|+||++ |.+|++.|+++++ +.+.+.+
T Consensus       175 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l  252 (376)
T 2dou_A          175 ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSY-NLAGFRLGFALGS-EEALARL  252 (376)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHH-TCGGGCCEEEEEC-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhc-CChhheeEEEecC-HHHHHHH
Confidence            76   788999999999999999999865432    1121    25689999999999 5567889999876 4566666


Q ss_pred             HHhhhhcCCCCCHHhHHHHHccccc----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          225 YFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .......+.+.++..+.++...++.    +.+.++++.++++.+.+.|+++
T Consensus       253 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  303 (376)
T 2dou_A          253 ERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV  303 (376)
T ss_dssp             HHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6555555555566666665555543    4556677788888899988875

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.93  E-value=1.4e-25  Score=200.40  Aligned_cols=251  Identities=14%  Similarity=0.073  Sum_probs=173.7

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCC-----ceEEecchHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKAD-----RALCFTSGMAAL   83 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~-----~~i~~~sG~~ai   83 (301)
                      ..+++|+++...+|  .+|.+.........  ......|... |.+. ++++.+++++.+|.+     +++++++|++++
T Consensus        47 ~~~idl~~g~~~~~--~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al  122 (404)
T 2o1b_A           47 LPLINMAVGIPDGP--TPQGIIDHFQKALT--IPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGL  122 (404)
T ss_dssp             SCCEECCCCSCSSC--CCHHHHHHHHHHTT--CHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHH
T ss_pred             CCEEecCCcCCCCC--CCHHHHHHHHHHHh--CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHH
Confidence            45789985444455  34444433211111  1112235543 4443 666666666666753     344555557888


Q ss_pred             H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                      . ++..++++||+|+++.|.|+++..    .++..|.+++.++.+      |++++++++++++++|++++|+||||.+.
T Consensus       123 ~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~  198 (404)
T 2o1b_A          123 VAVPTCVINPGDYVLLPDPGYTDYLA----GVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTA  198 (404)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCSSHHH----HHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCC
T ss_pred             HHHHHHhcCCCCEEEEcCCCchhHHH----HHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccC
Confidence            6 566678899999999999999974    445667888887753      67888888877789999999999999998


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCcccc----CccCC----CCcEEEecccccccCCCCceeeEEEEcchhHHHHHH
Q 022194          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (301)
Q Consensus       157 ~---l~~l~~l~~~~~~~li~D~~~~~~~~~----~~~~~----~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~  225 (301)
                      +   +++|+++|+++|+++|+||+|+.+.+.    .....    +.++++.|+||++ |.+|++.|+++++ +.+.+.+.
T Consensus       199 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~l~  276 (404)
T 2o1b_A          199 TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGY-NMSGFRVGFAVGN-KDMIQALK  276 (404)
T ss_dssp             CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTT-TCGGGCCEEEEEC-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhc-cCchhheEeEecC-HHHHHHHH
Confidence            5   788999999999999999999865432    11222    4579999999999 5567889999886 45666666


Q ss_pred             HhhhhcCCCCCHHhHHHHHccccc----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          226 FLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ........+.++..++++...++.    +.+.++++.++++.+.+.|+++
T Consensus       277 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  326 (404)
T 2o1b_A          277 KYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA  326 (404)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            555555556666666665554433    4566677788888899999876

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.93  E-value=6e-25  Score=196.62  Aligned_cols=249  Identities=18%  Similarity=0.173  Sum_probs=171.2

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----C-ceEEecchHHHHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----D-RALCFTSGMAALA   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~-~~i~~~sG~~ai~   84 (301)
                      .+++|+.....++  .+|.+.........   .....|... |.+. ++++.+++.+.+|.    + +++++++|++++.
T Consensus        26 ~~i~l~~~~~~~~--~~~~v~~a~~~~~~---~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~  100 (411)
T 2o0r_A           26 GAVNLGQGFPDED--GPPKMLQAAQDAIA---GGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIA  100 (411)
T ss_dssp             TCEESSCSSCSSC--CCHHHHHHHHHHHH---TTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHH
T ss_pred             CeeeccCcCCCCC--CCHHHHHHHHHHHh---cCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHH
Confidence            4788874333344  34444433211111   112345543 4444 77777777776663    2 4555566678986


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC--------CCHHHHHhhcCCCceEEEEeCCCCCcccc
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~v~i~~~~np~G~~  155 (301)
                       ++..++++||+|++++|.|+++.    ..+...|.+++.++.        .|++++++++++++++|++++|+||||.+
T Consensus       101 ~~~~~~~~~gd~Vl~~~~~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~  176 (411)
T 2o0r_A          101 AAVLGLVEPGSEVLLIEPFYDSYS----PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAV  176 (411)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             HHHHHhcCCCCEEEEeCCCcHhHH----HHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCC
Confidence             56667889999999999999986    444567888887765        37899999998889999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCCcCCccccC-----cc----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       156 ~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                      .+   +++|+++|+++|+++|+||+|+.+.+..     ..    ..+.|+++.|+||++ |++|++.|+++++ +.+.+.
T Consensus       177 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~  254 (411)
T 2o0r_A          177 LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMF-NCTGWKIGWACGP-AELIAG  254 (411)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT-TCTTTCEEEEECC-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhc-CCccceEEEEeeC-HHHHHH
Confidence            76   6899999999999999999998654321     11    146799999999999 5678899999986 456565


Q ss_pred             HHHhhhhcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          224 LYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.......+.+.++..+.++...++    .+.+.++++.++++++.+.|++.
T Consensus       255 l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  306 (411)
T 2o0r_A          255 VRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI  306 (411)
T ss_dssp             HHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5554443333333333333333332    34566677778888888888764

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.93  E-value=2e-25  Score=197.16  Aligned_cols=246  Identities=13%  Similarity=0.064  Sum_probs=176.0

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH-
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA-   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-   84 (301)
                      .+++|++....++  .+|.+.....  ...  .....|.+. |.+. ++++.+++++.+|.    ++++++++|++++. 
T Consensus        24 ~~i~l~~~~~~~~--~~~~v~~a~~--~~~--~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~   97 (376)
T 3ezs_A           24 RGLDLGIGEPQFE--TPKFIQDALK--NHT--HSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN   97 (376)
T ss_dssp             CCCBCSSCCCCSC--CCHHHHHHHH--TTG--GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred             CEEEeCCCCCCCC--CCHHHHHHHH--Hhh--hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence            7899985554455  3444443321  111  123445554 5544 78888888877775    35556666689986 


Q ss_pred             HHHhccCC--CCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHH----HHHhhcCCCceEEEEeCCCCCcccccc-
Q 022194           85 AVTHLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD----EVASAIGPWTKLVWVESPTNPRQQICD-  157 (301)
Q Consensus        85 ~~~~~~~~--g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~----~l~~~l~~~~~~v~i~~~~np~G~~~~-  157 (301)
                      ++..++++  ||+|+++.|.|+++.    ..++..|.+++.++.++.+    ++++.+.+++++|++++|+||||.+.+ 
T Consensus        98 ~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~  173 (376)
T 3ezs_A           98 FPSFVLFDYQNPTIAYPNPFYQIYE----GAAKFIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSL  173 (376)
T ss_dssp             HHHHHTTTCSSCEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCTTTCCCCCH
T ss_pred             HHHHHcCCCCCCEEEEecCCcHhHH----HHHHHcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCCCcCCCCCH
Confidence            66677889  999999999999886    4556788999998876332    555666668899999999999999976 


Q ss_pred             --HHHHHHHHHHcCCEEEEeCCcCCccccC----cc---------CCCCcEEEecccccccCCCCceeeEEEEcchhHHH
Q 022194          158 --IRKIAEMAHAHGALLLVDNSIMSPVLSR----PL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (301)
Q Consensus       158 --l~~l~~l~~~~~~~li~D~~~~~~~~~~----~~---------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~  222 (301)
                        +++|+++|++||+++|+||+|+...+..    ..         ..+.++++.|+||++ |.+|++.|+++.+ +.+.+
T Consensus       174 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~  251 (376)
T 3ezs_A          174 EELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRS-SAPGLRSGFIAGD-SRLLE  251 (376)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTT-TCGGGCCEEEEEC-HHHHH
T ss_pred             HHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhcc-CCccceeEEEeeC-HHHHH
Confidence              7778888999999999999998654421    11         357889999999999 5668899999886 45666


Q ss_pred             HHHHhhhhcCCCCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHH
Q 022194          223 ELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~  269 (301)
                      .+.......+.+.++..+.++...++   .+.+.++++.++.+.+.+.|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~  301 (376)
T 3ezs_A          252 KYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK  301 (376)
T ss_dssp             HHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            66666655566677776666555443   355666777777777877775

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.93  E-value=1.9e-25  Score=200.40  Aligned_cols=217  Identities=19%  Similarity=0.165  Sum_probs=163.0

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhcc----CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~----~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      ..++++++++++++.+  +++++++|++|+. ++..+.    ++||+|+++++.|+++...+... ...|.+++.++.+ 
T Consensus        69 ~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~  147 (423)
T 3lvm_A           69 AVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLAPQR  147 (423)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH-HHTTCEEEEECCCT
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHH-HHcCCEEEEeccCC
Confidence            3688999999999987  6777777789986 444455    37999999999999987655332 6678999999876 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          |++++++++.+++++|++++++||||.+.|+++|+++|+++|+++|+|++++.+... .....++|+++.|+||++
T Consensus       148 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~  227 (423)
T 3lvm_A          148 NGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY  227 (423)
T ss_dssp             TSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTT
T ss_pred             CCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhc
Confidence                899999999999999999999999999999999999999999999999999887653 344567899999999976


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhh-------hhcCCCCCHHhHHHHHccccc----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                       |+.|  .|+++++++.... +....       .....+.+.....++..+++.    +.+.+++..++++++.+.|+++
T Consensus       228 -g~~g--~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  303 (423)
T 3lvm_A          228 -GPKG--IGALYVRRKPRVR-IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI  303 (423)
T ss_dssp             -SCSS--CEEEEECBTTBCC-CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             -CCCC--eEEEEEeccccCC-CCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             5666  5888887543321 11111       111233444444444333332    3566677888888899999888


Q ss_pred             CCcceE
Q 022194          272 PRVKKV  277 (301)
Q Consensus       272 ~~v~~v  277 (301)
                      +++..+
T Consensus       304 ~~~~~~  309 (423)
T 3lvm_A          304 EEVYLN  309 (423)
T ss_dssp             TTEEEE
T ss_pred             CCEEEe
Confidence            776443

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.93  E-value=1.2e-24  Score=195.17  Aligned_cols=251  Identities=17%  Similarity=0.174  Sum_probs=177.5

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCC-----ceEEecchHHHHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKAD-----RALCFTSGMAALA   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~-----~~i~~~sG~~ai~   84 (301)
                      .+++|+.+...++  .+|.+.......... ......|... |.+. ++++.+++.+.+|.+     +++++++|++++.
T Consensus        29 ~~i~l~~g~~~~~--~~~~v~~a~~~~~~~-~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~  105 (422)
T 3fvs_A           29 DVVNLGQGFPDFP--PPDFAVEAFQHAVSG-DFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALF  105 (422)
T ss_dssp             CCEECCCSSCSSC--CCHHHHHHHHHHHHS-CGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHH
T ss_pred             CceEeCCCCCCCC--CCHHHHHHHHHHHhC-CCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHH
Confidence            5788884443333  344443332111110 0012355554 5544 777888887777643     4555555679986


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----------------CHHHHHhhcCCCceEEEEe
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----------------DLDEVASAIGPWTKLVWVE  146 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----------------d~~~l~~~l~~~~~~v~i~  146 (301)
                       ++..++++||+|+++.|.|+++.    ..++..|.+++.++.+                 |++++++++++++++|+++
T Consensus       106 ~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~  181 (422)
T 3fvs_A          106 TAFQALVDEGDEVIIIEPFFDCYE----PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLN  181 (422)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEE
T ss_pred             HHHHHHcCCCCEEEEcCCCchhhH----HHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEEC
Confidence             66667899999999999999987    4455678887777643                 7899999999899999999


Q ss_pred             CCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCccccC-----cc----CCCCcEEEecccccccCCCCceeeEEE
Q 022194          147 SPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSR-----PL----ELGADIVMHSATKFIAGHSDVMAGVLA  214 (301)
Q Consensus       147 ~~~np~G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~~----~~~~di~~~S~sK~~~g~~g~~~g~~~  214 (301)
                      +|+||||.+.   ++++|+++|+++|+++|+||+|+...+..     ..    ..+.++++.|+||++ |++|++.|+++
T Consensus       182 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~  260 (422)
T 3fvs_A          182 TPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF-SATGWKVGWVL  260 (422)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHH-TCGGGCCEEEE
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhcc-CCccceEEEEE
Confidence            9999999998   59999999999999999999998644321     11    124679999999999 66788999999


Q ss_pred             EcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc-----------ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          215 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-----------KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +++ .+.+.+.........+.++..+.++...+           +.+.+.++++.++++.+.+.|+++
T Consensus       261 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  327 (422)
T 3fvs_A          261 GPD-HIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV  327 (422)
T ss_dssp             CCH-HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eCH-HHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            875 45565555555555556666655544433           335677788888999999999886

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.93  E-value=1.9e-24  Score=191.28  Aligned_cols=212  Identities=13%  Similarity=0.108  Sum_probs=161.8

Q ss_pred             chHHHHHHHHHhhcCCC--c-eEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC----
Q 022194           55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----  126 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~--~-~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~----  126 (301)
                      +.++++++++++++|.+  + +++++||++|+. ++..++++||+|++++|.|++..  +...++..|.+++.++.    
T Consensus        53 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  130 (386)
T 2dr1_A           53 KVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKR--YKEVVESNGRKAVVLEYEPGK  130 (386)
T ss_dssp             HHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHH--HHHHHHHhCCceEEEecCCCC
Confidence            44889999999999986  5 445566689986 55667899999999999998721  12555677888888886    


Q ss_pred             -CCHHHHHhhc--CCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          127 -CDLDEVASAI--GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       127 -~d~~~l~~~l--~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                       .|++++++++  .+++++|++++++||||.+.|+++|+++|+++|+++|+|++|+.+... .....++|+++.|+||++
T Consensus       131 ~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~  210 (386)
T 2dr1_A          131 AVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAF  210 (386)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTT
T ss_pred             CCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccc
Confidence             3899999999  568999999999999999999999999999999999999999977653 333457899999999999


Q ss_pred             cCCCCceeeEEEEcchhHHHHHH----------------Hhh--hhcCCCCCHHhHHHHHccccc------HHHHHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELY----------------FLQ--NAEGSGLAPFDCWICLRGVKT------MALRVEKQQ  258 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~----------------~~~--~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~  258 (301)
                      +++.|  .|+++++++ +.+.+.                ...  .....+.+...++++..+++.      +.+.++++.
T Consensus       211 ~~~~g--~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~  287 (386)
T 2dr1_A          211 GVPPG--LAIGAFSER-FLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYE  287 (386)
T ss_dssp             CCCSS--CEEEEECHH-HHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCc--eEEEEECHH-HHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            77655  589988754 444331                111  122344555555555444443      456678888


Q ss_pred             HHHHHHHHHHHhC
Q 022194          259 DNAQKIAEFLASH  271 (301)
Q Consensus       259 ~~~~~l~~~l~~~  271 (301)
                      ++++++.+.|+++
T Consensus       288 ~~~~~l~~~L~~~  300 (386)
T 2dr1_A          288 KRAKMVREGVREI  300 (386)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            8899999999876

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.93  E-value=2.3e-25  Score=201.46  Aligned_cols=218  Identities=14%  Similarity=0.129  Sum_probs=157.6

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC---CceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEE
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA---DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~---~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~  121 (301)
                      .|.+. |.+. ++++.+++.+.+|.   ++++++++|++++. ++..++++||+|+++.|.|+++.    ..++..|.++
T Consensus       113 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~----~~~~~~g~~~  188 (448)
T 3aow_A          113 QYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAAL----QAFNFYEPQY  188 (448)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTCCEE
T ss_pred             CCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCEE
Confidence            45544 4444 66666666555576   34555555579986 66667899999999999999987    4445678888


Q ss_pred             EEecCC----CHHHHHhhcC----C--CceEEE-EeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC--
Q 022194          122 KRVNTC----DLDEVASAIG----P--WTKLVW-VESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--  185 (301)
Q Consensus       122 ~~~~~~----d~~~l~~~l~----~--~~~~v~-i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~--  185 (301)
                      +.++.+    |+++++++++    +  ++++|+ +++|+||||.+.+   +++|+++|++||+++|+||+|+.+.+..  
T Consensus       189 ~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~  268 (448)
T 3aow_A          189 IQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNP  268 (448)
T ss_dssp             EEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCC
T ss_pred             EEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCC
Confidence            888763    7899998886    5  788885 6899999999976   6789999999999999999998654421  


Q ss_pred             ---c---cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc------HHHH
Q 022194          186 ---P---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALR  253 (301)
Q Consensus       186 ---~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~  253 (301)
                         .   ...+.++++.||||++ + +|+|.|+++++ +.+.+.+.........+.++..+.++...++.      +.+.
T Consensus       269 ~~~~~~~~~~~~vi~~~S~SK~~-~-~GlriG~v~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~  345 (448)
T 3aow_A          269 EKKIKALDNEGRVIYLGTFSKIL-A-PGFRIGWMVGD-PGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEI  345 (448)
T ss_dssp             CCCTGGGCTTSCEEEEEESTTTT-C-GGGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             CcCHHhcCCCCCEEEEccchhhc-c-ccccEEEEEeC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence               1   1235689999999999 5 68899999997 45666655544443344455555554444432      4555


Q ss_pred             HHHHHHHHHHHHHHHHh-CC
Q 022194          254 VEKQQDNAQKIAEFLAS-HP  272 (301)
Q Consensus       254 ~~~~~~~~~~l~~~l~~-~~  272 (301)
                      ++.+.++++.+.+.|++ .|
T Consensus       346 ~~~~~~~~~~l~~~L~~~~~  365 (448)
T 3aow_A          346 RKFYKPRRDAMLEALEEFMP  365 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHhCC
Confidence            66677888888888886 45

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.93  E-value=6.3e-24  Score=189.84  Aligned_cols=252  Identities=14%  Similarity=0.135  Sum_probs=169.6

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcC----CCce--EEecchHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDK----ADRA--LCFTSGMAA   82 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~----~~~~--i~~~sG~~a   82 (301)
                      ..+++|+ .++|++...+|.+.......   .....+.|.+. |.+. ++++.+++....+    .++.  ..+.+|+++
T Consensus        41 ~~~i~l~-~g~~~d~~~~~~v~~a~~~a---~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga  116 (409)
T 4eu1_A           41 KRKVNLS-IGVYRDDADQPFVLECVKQA---TLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGA  116 (409)
T ss_dssp             SSCEECC-CSSCCCTTSCCCCCHHHHTC---CCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHH
T ss_pred             cCceeee-eeEEECCCCCEeecHHHHhc---CccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHH
Confidence            4679999 78886666666555443222   22344556544 5443 5555554432221    2233  336666777


Q ss_pred             HHH----HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcC---CCceEEEEeCC
Q 022194           83 LAA----VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESP  148 (301)
Q Consensus        83 i~~----~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~---~~~~~v~i~~~  148 (301)
                      +.+    +..++++||+|++++|.|.++.    ..++..|.+++.++..       |++++++.++   ++++++++++|
T Consensus       117 ~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p  192 (409)
T 4eu1_A          117 LRIGGDLLNRFVANCNRIYGPDVGYPNHE----SIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACA  192 (409)
T ss_dssp             HHHHHHHGGGTSSSCCEEEEESSCCTHHH----HHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSS
T ss_pred             HHHHHHHHHHhcCCCCEEEEeCCCcHhHH----HHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCC
Confidence            643    2345688999999999999986    5556788899988862       7899999885   35667777999


Q ss_pred             CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-----------ccCCCCcEEEecccccccCCCCceeeEE-
Q 022194          149 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVL-  213 (301)
Q Consensus       149 ~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----------~~~~~~di~~~S~sK~~~g~~g~~~g~~-  213 (301)
                      +||||.+.+   +++|+++|+++|+++|+||+|....+..           ......++++.|+||++ |.+|+|.|++ 
T Consensus       193 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~riG~~~  271 (409)
T 4eu1_A          193 HNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNF-GLYGHRCGALH  271 (409)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTS-SCGGGCCEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccc-cCccCCceEEE
Confidence            999999986   5669999999999999999998655432           01234568999999999 6678899997 


Q ss_pred             -EEcchh----HHHHHHHhhhhcCCCCCHHhHHHHHcccc----------cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          214 -AVKGER----LAKELYFLQNAEGSGLAPFDCWICLRGVK----------TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       214 -~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                       +..++.    +.+.+...........+...+.++...++          .+.+.++++.++++++.+.|+++
T Consensus       272 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (409)
T 4eu1_A          272 ISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC  344 (409)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             666665    44444443333334444555544443333          24556678888888899998876

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.93  E-value=1.9e-24  Score=192.99  Aligned_cols=222  Identities=19%  Similarity=0.185  Sum_probs=160.7

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      .|... |.+. ++++.+++.+.+|.    ++++++++|++|+. ++..++++||+|++++|.|+++.    ..++..|.+
T Consensus        73 ~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~  148 (406)
T 1xi9_A           73 YYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYT----GLVKFYGGK  148 (406)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHHTTCE
T ss_pred             CCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHH----HHHHHcCCE
Confidence            45443 4433 66677777665542    35556666689986 55667889999999999999886    444567788


Q ss_pred             EEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----c
Q 022194          121 VKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P  186 (301)
Q Consensus       121 ~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----~  186 (301)
                      ++.++.+       |++++++++++++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+.+.+..    .
T Consensus       149 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~  228 (406)
T 1xi9_A          149 PVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISP  228 (406)
T ss_dssp             EEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCH
T ss_pred             EEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCH
Confidence            8777642       789999999888999999999999999875   9999999999999999999998755421    1


Q ss_pred             cC--CCC-cEEEecccccccCCCCceeeEEE--Ecch---hHHHHHHHhhhhcCCCCCHHhHHHHHccc----ccHHHHH
Q 022194          187 LE--LGA-DIVMHSATKFIAGHSDVMAGVLA--VKGE---RLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRV  254 (301)
Q Consensus       187 ~~--~~~-di~~~S~sK~~~g~~g~~~g~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~  254 (301)
                      ..  .+. ++++.|+||++ +++|++.|+++  .+++   .+.+.+....... .+.++..++++...+    +.+.+.+
T Consensus       229 ~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~  306 (406)
T 1xi9_A          229 GSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYM  306 (406)
T ss_dssp             HHHCSSSCEEEEEESTTTT-CCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHH
T ss_pred             HHcCCCceEEEEecccccc-CCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence            11  356 89999999999 56678889998  6641   5556555444433 444444444443333    2356666


Q ss_pred             HHHHHHHHHHHHHHHhCCCcc
Q 022194          255 EKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      +++.++++.+.+.|++++++.
T Consensus       307 ~~~~~~~~~l~~~L~~~~~~~  327 (406)
T 1xi9_A          307 KKLKERRDYIYKRLNEIPGIS  327 (406)
T ss_dssp             HHHHHHHHHHHHHHHTSTTEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCe
Confidence            788888889999998876553

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.93  E-value=6e-24  Score=189.16  Aligned_cols=253  Identities=15%  Similarity=0.162  Sum_probs=174.2

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCC-CccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENG-PYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAAL   83 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~-~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai   83 (301)
                      ..+++|++.+..++  .+|.+.............. ...|.+. |.+. ++++.+++.+.+|.    ++++++++|++++
T Consensus        35 ~~~i~l~~~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al  112 (398)
T 3ele_A           35 ENVYDFSIGNPSIP--APQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASL  112 (398)
T ss_dssp             GGCEECCSCCCCSC--CCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred             CCeEEeecCCCCCC--CCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHH
Confidence            46899984422233  3444443321111100000 2345444 5544 78888888877763    2455566667998


Q ss_pred             H-HHHhccCCC-CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCcccc
Q 022194           84 A-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        84 ~-~~~~~~~~g-~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~  155 (301)
                      . ++..++++| |+|++++|.|+++.    ..++..|.+++.++.+      |++++++++++++++|++++|+||||.+
T Consensus       113 ~~~~~~l~~~g~d~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~  188 (398)
T 3ele_A          113 SICFRALTSDAYDEFITIAPYFPEYK----VFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTV  188 (398)
T ss_dssp             HHHHHHHCCSTTCEEEEESSCCTHHH----HHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCC
T ss_pred             HHHHHHHcCCCCCEEEEeCCCchhhH----HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCC
Confidence            6 666678999 99999999999987    4556778999998865      8899999999899999999999999999


Q ss_pred             cc---HHHHHHHHHH------cCCEEEEeCCcCCccccC------ccCCCCcEEEecccccccCCCCceeeEEEEcchh-
Q 022194          156 CD---IRKIAEMAHA------HGALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-  219 (301)
Q Consensus       156 ~~---l~~l~~l~~~------~~~~li~D~~~~~~~~~~------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~-  219 (301)
                      .+   +++|+++|++      +|+++|+||+|+...+..      ....+.++++.|+||++ |.+|++.|+++++++. 
T Consensus       189 ~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~  267 (398)
T 3ele_A          189 YSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSL-SLPGERIGYVLVPDEVY  267 (398)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTS-SCTTTCCEEEECCTTST
T ss_pred             CCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcC-CCccceeEEEEEcchhh
Confidence            87   7778899999      999999999998644321      12345789999999999 5567899999998763 


Q ss_pred             ----HHHHHHHhhhhc-CCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          220 ----LAKELYFLQNAE-GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       220 ----~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                          +...+....... ....+...+.++...++... .++++.++++++.+.|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~~L~~~  323 (398)
T 3ele_A          268 DKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-DINAYKENRDLLYEGLTRI  323 (398)
T ss_dssp             THHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHc
Confidence                223333333332 34455566666665555422 3466777777888888764

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.93  E-value=3.6e-24  Score=191.79  Aligned_cols=257  Identities=15%  Similarity=0.122  Sum_probs=169.6

Q ss_pred             ceeeecCCCCC--CCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhh------c----CCCceEEe
Q 022194           11 TLLMNFSNEFD--PYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKL------D----KADRALCF   76 (301)
Q Consensus        11 ~~~~~~~~~~~--~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~------~----~~~~~i~~   76 (301)
                      ..+++|+.+..  +.....+|.+.........  ......|.+. |.+. ++++.+++.+.      .    ..++++++
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~--~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~  110 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAID--SQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLC  110 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHH--TTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEE
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhh--CCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEe
Confidence            56788873322  1233344444433211111  1112345443 4333 55555555521      1    13355566


Q ss_pred             cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-------CCHHHHHhhcCCCceEEEEeCC
Q 022194           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESP  148 (301)
Q Consensus        77 ~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~v~i~~~  148 (301)
                      ++|++++. ++..++++||+|++++|.|+++.    ..++..|.+++.++.       .|++++++++++++++|++++|
T Consensus       111 ~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p  186 (416)
T 1bw0_A          111 SGGSHGILMAITAICDAGDYALVPQPGFPHYE----TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNP  186 (416)
T ss_dssp             SHHHHHHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESS
T ss_pred             CChHHHHHHHHHHhCCCCCEEEEcCCCcHhHH----HHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCC
Confidence            66679986 56667889999999999999986    445567888877764       2789999999888999999999


Q ss_pred             CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcccc---------Ccc---CCCCcEEEecccccccCCCCceeeEE
Q 022194          149 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---------RPL---ELGADIVMHSATKFIAGHSDVMAGVL  213 (301)
Q Consensus       149 ~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~---------~~~---~~~~di~~~S~sK~~~g~~g~~~g~~  213 (301)
                      +||||.+.+   +++|+++|++||+++|+||+|+...+.         ...   ..+.++++.|+||++ +.+|++.|++
T Consensus       187 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Glr~G~~  265 (416)
T 1bw0_A          187 SNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL-VVPGWRLGWL  265 (416)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT-SCGGGCCEEE
T ss_pred             CCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhC-CCCCceEEEE
Confidence            999999988   999999999999999999999864321         111   123468899999999 4467899999


Q ss_pred             EEcch-hHHHH----HHHhhhhcCCCCCHHhHHHHHcccc-----cHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          214 AVKGE-RLAKE----LYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       214 ~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      +++++ .+.+.    +.... ....+.++..++++...++     .+.+.++++.++++.+.+.|++++++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  336 (416)
T 1bw0_A          266 LYVDPHGNGPSFLEGLKRVG-MLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLA  336 (416)
T ss_dssp             EEECTTCSCHHHHHHHHHHH-HHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred             EeeCchhhHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            98875 22222    21211 1233455555555544443     345667788888889999998876654

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.92  E-value=4.8e-24  Score=187.95  Aligned_cols=209  Identities=20%  Similarity=0.193  Sum_probs=170.0

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+...++++.++++++.+++++++||++|+. ++..+ +++||+|+++.+.|+++.    ..+...|.+++.++.+    
T Consensus        34 ~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~  109 (367)
T 3nyt_A           34 GPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATA----ETVALLGAKPVYVDIDPRTY  109 (367)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTC
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHH----HHHHHcCCEEEEEecCCccC
Confidence            4568999999999999999999999999986 56666 789999999999999987    4455678899888864    


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCC--cEEEecc--ccc
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA--DIVMHSA--TKF  201 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~--di~~~S~--sK~  201 (301)
                        |++++++++++++++|+   ++||+|...++++|.++|+++|+++|+|++|+.+........+.  |+++.||  +|+
T Consensus       110 ~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~K~  186 (367)
T 3nyt_A          110 NLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAP  186 (367)
T ss_dssp             SBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             CcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCCCc
Confidence              78999999998898888   78899999999999999999999999999998766543333333  9999997  899


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhh------------cCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNA------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~  269 (301)
                      +++ .|. +|+++.+++.+.+.+......            ....+++..+++.+..++.+.+..++..++++++.+.|+
T Consensus       187 l~~-~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~  264 (367)
T 3nyt_A          187 LGC-YGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLK  264 (367)
T ss_dssp             SCC-SSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC-cCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            954 343 789988877777766554432            235567777777777777777777888888889999998


Q ss_pred             hC
Q 022194          270 SH  271 (301)
Q Consensus       270 ~~  271 (301)
                      +.
T Consensus       265 ~~  266 (367)
T 3nyt_A          265 QV  266 (367)
T ss_dssp             HT
T ss_pred             cC
Confidence            86

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.92  E-value=3.2e-24  Score=191.04  Aligned_cols=216  Identities=16%  Similarity=0.178  Sum_probs=161.3

Q ss_pred             hHHHHHHHHHhhcCC---CceEEecchHHHHH-HHHhc----cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC
Q 022194           56 TRDALESLLAKLDKA---DRALCFTSGMAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~---~~~i~~~sG~~ai~-~~~~~----~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~  127 (301)
                      ...++++.++++++.   ++++++++|++|+. ++..+    +++||+|++++|.|++....+...++..|.+++.++.+
T Consensus        68 ~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  147 (406)
T 1kmj_A           68 KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN  147 (406)
T ss_dssp             HHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC
T ss_pred             HHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecC
Confidence            378899999999988   34556666679986 55566    78999999999999987655556666778888888864


Q ss_pred             -----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccc
Q 022194          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (301)
Q Consensus       128 -----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~  201 (301)
                           |++++++++++++++|++++++||||.+.|+++|+++|+++|+++|+|++|+.+... .....++|+++.|+||+
T Consensus       148 ~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~  227 (406)
T 1kmj_A          148 PDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKL  227 (406)
T ss_dssp             TTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGT
T ss_pred             CCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhc
Confidence                 789999999989999999999999999999999999999999999999999876543 22234789999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhh---------------------hcCCCCCHHhHHHHH-ccccc-----HHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQN---------------------AEGSGLAPFDCWICL-RGVKT-----MALRV  254 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~-~~l~~-----~~~~~  254 (301)
                      + |++|  .|++++++ .+.+.+.....                     ....+.++..+.+++ .+++.     +.+..
T Consensus       228 ~-g~~G--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~  303 (406)
T 1kmj_A          228 Y-GPTG--IGILYVKE-ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIA  303 (406)
T ss_dssp             T-SCTT--CEEEEECH-HHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             c-CCCC--cEEEEEeH-HHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence            9 6766  58888874 45554332211                     011122333333222 33332     34566


Q ss_pred             HHHHHHHHHHHHHHHhCCCcc
Q 022194          255 EKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      ++..++++++.+.|++++++.
T Consensus       304 ~~~~~~~~~l~~~L~~~~~~~  324 (406)
T 1kmj_A          304 EYEQNLMHYALSQLESVPDLT  324 (406)
T ss_dssp             HHHHHHHHHHHHHHTTSTTEE
T ss_pred             HHHHHHHHHHHHHHhcCCCeE
Confidence            777888889999998877654

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.92  E-value=6.9e-24  Score=194.30  Aligned_cols=225  Identities=14%  Similarity=0.119  Sum_probs=161.4

Q ss_pred             CccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH-HHHhcc-CCCCeEEEcCCCCccHHHHHhhhcccC
Q 022194           46 PYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (301)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~~~~~~-~~g~~Vlv~~~~y~~~~~~~~~~~~~~  117 (301)
                      ...|... |.+. ++++.+++.+.+|.    ++++++++|++++. ++..++ ++||+|+++.|.|+.+.    ..++..
T Consensus       127 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~----~~~~~~  202 (500)
T 3tcm_A          127 TGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYS----ASIALH  202 (500)
T ss_dssp             SSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHH----HHHHHT
T ss_pred             CCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHH----HHHHHc
Confidence            3456555 6655 77888888777653    35556666679986 555566 79999999999999887    455567


Q ss_pred             CcEEEEecCC-------CHHHHHhhcCC------CceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCc
Q 022194          118 GVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (301)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~  181 (301)
                      |.+++.++.+       |++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|...
T Consensus       203 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~  282 (500)
T 3tcm_A          203 GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQEN  282 (500)
T ss_dssp             TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC
T ss_pred             CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcccc
Confidence            8888888743       78999999875      7899999999999999975   777888899999999999999875


Q ss_pred             cccCc----------------cCCCCcEEEecccccccCCCCceeeEEEEc--chhHHHHHHHhhhhcCCCCCHHhHHHH
Q 022194          182 VLSRP----------------LELGADIVMHSATKFIAGHSDVMAGVLAVK--GERLAKELYFLQNAEGSGLAPFDCWIC  243 (301)
Q Consensus       182 ~~~~~----------------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (301)
                      .+...                ......+++.|+||.|.|.+|+|+|++++.  ++.+.+.+...... ....+...+.++
T Consensus       283 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~  361 (500)
T 3tcm_A          283 IYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASV-NLCSNITGQILA  361 (500)
T ss_dssp             BCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHT-TCCCCHHHHHHH
T ss_pred             ccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhc-ccCCCHHHHHHH
Confidence            54211                011124888999999966778999999882  44566655554432 233344443333


Q ss_pred             Hccc--------------ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          244 LRGV--------------KTMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       244 ~~~l--------------~~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      ...+              +...+.++++.++++.+.+.|++++++.
T Consensus       362 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~  407 (500)
T 3tcm_A          362 SLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGIT  407 (500)
T ss_dssp             HHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             HHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence            2222              2345566778888899999999887654

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.92  E-value=3.4e-24  Score=191.81  Aligned_cols=217  Identities=22%  Similarity=0.201  Sum_probs=163.0

Q ss_pred             chHHHHHHHHHhhcCC---CceEEecchHHHHH-HHHhc----cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           55 PTRDALESLLAKLDKA---DRALCFTSGMAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~---~~~i~~~sG~~ai~-~~~~~----~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      +...++++.++++++.   +++++++||++|+. ++..+    +++||+|++++|.|++....+...++..|.+++.++.
T Consensus        72 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~  151 (420)
T 1t3i_A           72 DAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL  151 (420)
T ss_dssp             HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB
T ss_pred             HHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEecc
Confidence            3478899999999988   46677777789986 55666    7899999999999999654444556667888888886


Q ss_pred             C-----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccc
Q 022194          127 C-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (301)
Q Consensus       127 ~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK  200 (301)
                      +     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+... .....+.|+++.|+||
T Consensus       152 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK  231 (420)
T 1t3i_A          152 DEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHK  231 (420)
T ss_dssp             CTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGG
T ss_pred             CCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhh
Confidence            3     789999999989999999999999999999999999999999999999999977653 3334578999999999


Q ss_pred             cccCCCCceeeEEEEcchhHHHHHHHhhhh--------------------cCCCCCHHhHHHHHc-cccc-----HHHHH
Q 022194          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNA--------------------EGSGLAPFDCWICLR-GVKT-----MALRV  254 (301)
Q Consensus       201 ~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~l~~-----~~~~~  254 (301)
                      .+ |++|  +|+++.++ .+.+.+......                    ...+.++..+.+++. +++.     +.+..
T Consensus       232 ~~-~~~g--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~  307 (420)
T 1t3i_A          232 MC-APTG--IGFLYGKE-EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIH  307 (420)
T ss_dssp             TT-SCTT--CEEEEECH-HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             hc-CCCc--eEEEEEch-HHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHH
Confidence            77 6666  68888874 454543322111                    111233333333222 2322     45567


Q ss_pred             HHHHHHHHHHHHHHHhCCCcc
Q 022194          255 EKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      ++..++++++.+.|++++++.
T Consensus       308 ~~~~~~~~~l~~~L~~~~g~~  328 (420)
T 1t3i_A          308 NYEVELTHYLWQGLGQIPQLR  328 (420)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEE
T ss_pred             HHHHHHHHHHHHHHHhCCCeE
Confidence            788888999999999877654

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.92  E-value=4.6e-24  Score=191.46  Aligned_cols=253  Identities=15%  Similarity=0.095  Sum_probs=168.2

Q ss_pred             eeeecCCCC--CCCCcccc-CeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcC----CC--ceEEecchH
Q 022194           12 LLMNFSNEF--DPYGALST-PLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDK----AD--RALCFTSGM   80 (301)
Q Consensus        12 ~~~~~~~~~--~~~g~~~~-p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~----~~--~~i~~~sG~   80 (301)
                      .+++|+.+.  |+.+...+ |.+.......  ........|.+. |.+. ++++.+++....+    .+  +++++++|+
T Consensus        50 ~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~--~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t  127 (420)
T 4f4e_A           50 TKVNLGVGVYTNEDGKIPLLRAVRDAEKAR--VEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGT  127 (420)
T ss_dssp             SCEECCCCSCCCTTSCCCCCHHHHHHHHHH--HHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred             CcEEeeeeeeECCCCCccCcHHHHHHHHHH--hccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccH
Confidence            678998432  44444432 2232221111  111133456554 6655 7777777766554    33  445556667


Q ss_pred             HHHHHH---HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC----C---CHHHHHhhcC---CCceEEEEeC
Q 022194           81 AALAAV---THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----C---DLDEVASAIG---PWTKLVWVES  147 (301)
Q Consensus        81 ~ai~~~---~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~----~---d~~~l~~~l~---~~~~~v~i~~  147 (301)
                      +|+..+   .+++++||+|++++|.|+++.    ..++..|.+++.++.    +   |++.+++.++   ++++++++++
T Consensus       128 ~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~  203 (420)
T 4f4e_A          128 GALKIGADFLRTLNPKAKVAISDPSWENHR----ALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHAC  203 (420)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEESCCHHHH----HHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECS
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCcHhHH----HHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCC
Confidence            998643   456899999999999999986    455567888888876    2   7999999997   6788999999


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----------ccCCCCcEEEecccccccCCCCceeeEEE
Q 022194          148 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLA  214 (301)
Q Consensus       148 ~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----------~~~~~~di~~~S~sK~~~g~~g~~~g~~~  214 (301)
                      |+||||.+.+   +++|+++|+++|+++|+||+|....+..          ....+.++++.|+||.+ |++|+|.|+++
T Consensus       204 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~  282 (420)
T 4f4e_A          204 CHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSF-SLYGERVGALS  282 (420)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT-TCGGGCEEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccC-cCcCCCcEEEE
Confidence            9999999965   7789999999999999999997655431          11346789999999999 66789999986


Q ss_pred             E--cchhHHHH----HHHhhhhcCCCCCHHhHHHHHccc----------ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          215 V--KGERLAKE----LYFLQNAEGSGLAPFDCWICLRGV----------KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       215 ~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .  +++.+.+.    +...........+...+.++...+          +.+.+.++++.++++.+.+.|+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  355 (420)
T 4f4e_A          283 IITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA  355 (420)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4  33444332    222222222233333333332222          224666778888888899999876

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.92  E-value=4.8e-24  Score=190.05  Aligned_cols=251  Identities=19%  Similarity=0.131  Sum_probs=174.5

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCcccc-CCCC-chHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGN-PTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~-~~g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      ..+++|. +|+++|...+|.+.................+. .++. +...++++.++++++.++.+++++|++++.++..
T Consensus        46 ~~~i~~~-~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~  124 (401)
T 2bwn_A           46 QDITVWC-GNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLS  124 (401)
T ss_dssp             EEEEECS-CSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH
T ss_pred             CcEEEee-CCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHH
Confidence            3568898 68888876666555432221110000001111 1234 3488999999999998888999999876654433


Q ss_pred             -c--cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC----CCceEEEEeCCCCCccccccHHHH
Q 022194           89 -L--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKI  161 (301)
Q Consensus        89 -~--~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~~~np~G~~~~l~~l  161 (301)
                       +  ..+||+|+++.|.|+++...+    +..|.+++.++.+|++++++.++    +++++|++++++||||.+.|+++|
T Consensus       125 ~l~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i  200 (401)
T 2bwn_A          125 TLRVLFPGLIIYSDSLNHASMIEGI----KRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEI  200 (401)
T ss_dssp             HHHHHSTTCEEEEETTCCHHHHHHH----HHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHH
T ss_pred             HHhcCCCCCEEEECchhhHHHHHHH----HHcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHH
Confidence             3  358999999999999887443    45788999999888999988876    578999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCcCCccccCc-------cC--CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh--h
Q 022194          162 AEMAHAHGALLLVDNSIMSPVLSRP-------LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--A  230 (301)
Q Consensus       162 ~~l~~~~~~~li~D~~~~~~~~~~~-------~~--~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~--~  230 (301)
                      +++|+++|+++|+||+|+.+.+...       ..  ...|+++.|+||+++++    +|+++.+ +.+.+.+.....  .
T Consensus       201 ~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~----GG~~~~~-~~~~~~l~~~~~~~~  275 (401)
T 2bwn_A          201 CDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF----GGYIAAS-ARMVDAVRSYAPGFI  275 (401)
T ss_dssp             HHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC----CEEEEEC-HHHHHHHHHHCHHHH
T ss_pred             HHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCC----CCEEecC-HHHHHHHHHhCcCce
Confidence            9999999999999999986543210       01  13589999999999643    3888776 455554443221  1


Q ss_pred             cCCCCCHHhHHHHHcccc---cH--HHHHHHHHHHHHHHHHHHHhC
Q 022194          231 EGSGLAPFDCWICLRGVK---TM--ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~~l~---~~--~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ...+.++..++++..+++   ..  .+.++++.++++++.+.|++.
T Consensus       276 ~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (401)
T 2bwn_A          276 FSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL  321 (401)
T ss_dssp             TSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC
Confidence            223334444444444433   32  566778888888899988875

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.92  E-value=4e-24  Score=190.59  Aligned_cols=254  Identities=12%  Similarity=0.066  Sum_probs=165.0

Q ss_pred             eeeecCCCCCCCCccccCee-ecceeecCCC-CCCCCccccCC-CCch-HHHHHHHHHhhcC----CCceEE--ecchHH
Q 022194           12 LLMNFSNEFDPYGALSTPLY-QTATFKQPSA-TENGPYDYTRS-GNPT-RDALESLLAKLDK----ADRALC--FTSGMA   81 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~-~~~~~~~~~~-~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~----~~~~i~--~~sG~~   81 (301)
                      ..++|+ ...|+....+|.+ .+..-..... .......|.+. |.+. ++++.+++.+.+|    .++.++  +++|++
T Consensus        29 ~~i~l~-~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~  107 (401)
T 7aat_A           29 KKMNLG-VGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTG  107 (401)
T ss_dssp             TCEECC-CCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             Cceeee-eeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchH
Confidence            478898 6666433333322 1110000000 01234456554 6655 7777777776655    455555  566678


Q ss_pred             HHHHH-Hh---ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcC---CCceEEEEeC
Q 022194           82 ALAAV-TH---LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVES  147 (301)
Q Consensus        82 ai~~~-~~---~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~---~~~~~v~i~~  147 (301)
                      ++..+ ..   ++++||+|++++|.|.++.    ..++..|.+++.++.+       |++.+++.+.   ++++++++++
T Consensus       108 al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~  183 (401)
T 7aat_A          108 SLRVGANFLQRFFKFSRDVYLPKPSWGNHT----PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHAC  183 (401)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEEESCCTTHH----HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESS
T ss_pred             HHHHHHHHHHHhccCCCEEEEcCCCchhHH----HHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCC
Confidence            88633 33   3489999999999999997    4455678888888753       5675555554   5788999999


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccCc-----------cCCCCcEEEecccccccCCCCceeeEE
Q 022194          148 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP-----------LELGADIVMHSATKFIAGHSDVMAGVL  213 (301)
Q Consensus       148 ~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~~-----------~~~~~di~~~S~sK~~~g~~g~~~g~~  213 (301)
                      |+||||.+.+   +++|+++|++||+++|+||+|....+...           .....++++.|+||+| |++|+|.|++
T Consensus       184 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~RiG~l  262 (401)
T 7aat_A          184 AHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGERAGAF  262 (401)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccc-ccccCceEEE
Confidence            9999998864   88899999999999999999976554321           2335679999999999 6778999998


Q ss_pred             EE--cchh----HHHHHHHhhhhcCCCCCHHhHHHHHcc----------cccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          214 AV--KGER----LAKELYFLQNAEGSGLAPFDCWICLRG----------VKTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       214 ~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------l~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.  .++.    +...+...........+...+..+...          .+.+.+.++++.++++++.+.|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  336 (401)
T 7aat_A          263 TVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKE  336 (401)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            87  2333    333333333322333333333333222          2334556677888888899988876

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.92  E-value=5.8e-25  Score=193.71  Aligned_cols=213  Identities=18%  Similarity=0.183  Sum_probs=161.5

Q ss_pred             CchHHHHHHH-HHhhcCCCceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEec--CC-
Q 022194           54 NPTRDALESL-LAKLDKADRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN--TC-  127 (301)
Q Consensus        54 ~~~~~~l~~~-l~~~~~~~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~--~~-  127 (301)
                      .+...+++++ ++++++.+ .+++++| ++|+. ++..++++||+|++++|.|+++..    .++..|.+++.++  .+ 
T Consensus        52 ~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~  126 (371)
T 2e7j_A           52 TPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYV----AAERAGLNIALVPKTDYP  126 (371)
T ss_dssp             -CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH----HHHHTTCEEEEECCCCTT
T ss_pred             HHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHH----HHHHcCCeEEEeecccCC
Confidence            3458999999 99999988 5555555 78986 666678999999999999998874    3567788999998  55 


Q ss_pred             ----CHHHHHhhcC-----CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEec
Q 022194          128 ----DLDEVASAIG-----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHS  197 (301)
Q Consensus       128 ----d~~~l~~~l~-----~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S  197 (301)
                          |+++++++++     +++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+... .....+.|++++|
T Consensus       127 ~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  206 (371)
T 2e7j_A          127 DYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGS  206 (371)
T ss_dssp             TCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEE
T ss_pred             CCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEec
Confidence                8999999987     68999999999999999999999999999999999999999987653 3334478999999


Q ss_pred             ccccccCCCCceeeEEEEcchhHHHH-HHHhhh--hc-----CCCCCHHhHHHHHcccccHH-HHHHHH--HHHHHHHHH
Q 022194          198 ATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQN--AE-----GSGLAPFDCWICLRGVKTMA-LRVEKQ--QDNAQKIAE  266 (301)
Q Consensus       198 ~sK~~~g~~g~~~g~~~~~~~~~~~~-~~~~~~--~~-----~~~~~~~~~~~~~~~l~~~~-~~~~~~--~~~~~~l~~  266 (301)
                      +||+++++.  ++|+++++++ +.+. +.....  ..     ..+.+....+++..+++.+. +..++.  .++++++.+
T Consensus       207 ~sK~~~~~~--~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~  283 (371)
T 2e7j_A          207 GHKSMAASG--PIGVMGMKEE-WAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAA  283 (371)
T ss_dssp             HHHHSSCCS--SCEEEEECTT-TTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred             CCcCCCCCC--CcEEEEEech-hhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999997654  5799998865 3332 222221  11     33344444544444554444 345566  788888999


Q ss_pred             HHHhCCCcc
Q 022194          267 FLASHPRVK  275 (301)
Q Consensus       267 ~l~~~~~v~  275 (301)
                      .|+++ ++.
T Consensus       284 ~L~~~-~~~  291 (371)
T 2e7j_A          284 EMEKL-GIK  291 (371)
T ss_dssp             HHHHT-TCE
T ss_pred             HHHHc-CcE
Confidence            99886 553

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.92  E-value=9.4e-25  Score=191.92  Aligned_cols=248  Identities=13%  Similarity=0.141  Sum_probs=171.1

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~   87 (301)
                      ..+++|++..+.++  .+|.+........   ......+..++.+...++++++++++|.+  ++++++||++++. ++.
T Consensus        26 ~~~i~l~~~~~~~~--~~~~v~~a~~~~~---~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~  100 (360)
T 3hdo_A           26 ASWIKLNTNENPYP--PSPEVVKAILEEL---GPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIR  100 (360)
T ss_dssp             TTSEECSSCCCSSC--CCHHHHHHHHHHH---TTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred             cceeeccCCCCCCC--CCHHHHHHHHHHH---hcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHH
Confidence            46899984444344  4454443321111   11111112222233578899999998854  5666777789986 666


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHH
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~  166 (301)
                      .++++||+|+++.|.|+++.    ..++..|.+++.++.++...+++..+ .+++++++++|+||||.+.|+++|.++|+
T Consensus       101 ~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~  176 (360)
T 3hdo_A          101 AFAAEGEEIGYVHPSYSYYG----TLAEVQGARVRTFGLTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELAR  176 (360)
T ss_dssp             HHCCTTCEEEEESSSCTHHH----HHHHHHTCEEEEECBCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHhCCCCEEEEcCCChHHHH----HHHHHCCCEEEEeeCCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence            77899999999999999987    45556788999988753212222222 24679999999999999999999999999


Q ss_pred             HcCCEEEEeCCcCCccccC----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHH
Q 022194          167 AHGALLLVDNSIMSPVLSR----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (301)
Q Consensus       167 ~~~~~li~D~~~~~~~~~~----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (301)
                      ++|+++|+||+|+......    ....+.++++.|+||++ |.+|++.|+++++ +.+.+.+.....  ..+.++..+++
T Consensus       177 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~~~~~~~--~~~~~~~~~~a  252 (360)
T 3hdo_A          177 RCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSY-SLAGMRIGLAIAR-PEVIAALDKIRD--HYNLDRLAQAA  252 (360)
T ss_dssp             HBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTT-SCTTSCCEEEECC-HHHHHHHHHHSC--SCCSCHHHHHH
T ss_pred             HCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhh-cCCccceeeEeeC-HHHHHHHHHhCC--CCCCCHHHHHH
Confidence            9999999999998532111    12345679999999999 5567899999985 556665544433  34566666666


Q ss_pred             HHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          243 CLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       243 ~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +...++.   +.+.++++.++++++.+.|+++
T Consensus       253 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  284 (360)
T 3hdo_A          253 CVAALRDQAYLSECCRRIRETREWFTTELRSI  284 (360)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            5555443   5667778888888999999876

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.92  E-value=9.9e-24  Score=193.08  Aligned_cols=224  Identities=16%  Similarity=0.150  Sum_probs=160.5

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcC-C----CceEEecchHHHHH-HHHhccCCCC----eEEEcCCCCccHHHHHhhhc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDK-A----DRALCFTSGMAALA-AVTHLLGTGE----EIVAGDDLYGGTDRLLSRVT  114 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~-~----~~~i~~~sG~~ai~-~~~~~~~~g~----~Vlv~~~~y~~~~~~~~~~~  114 (301)
                      ..|+.. |.+. ++++.+++.+..| .    +++++++++++++. ++..++++||    .|+++.|.|+.+.    ..+
T Consensus       123 ~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~----~~~  198 (498)
T 3ihj_A          123 GSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYS----AVI  198 (498)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHH----HHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHH----HHH
Confidence            346555 6654 8888888888774 3    35555555578886 5566778775    9999999999887    455


Q ss_pred             ccCCcEEEEecCC-------CHHHHHhhcCC-----CceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcC
Q 022194          115 PKTGVVVKRVNTC-------DLDEVASAIGP-----WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM  179 (301)
Q Consensus       115 ~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~  179 (301)
                      ...|.+++.++.+       |++++++++++     ++++|++++|+||||.+.+   +++|+++|++||+++|+||+|.
T Consensus       199 ~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~  278 (498)
T 3ihj_A          199 SELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQ  278 (498)
T ss_dssp             HHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             HHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcc
Confidence            5678888888765       88999998875     5899999999999999975   7779999999999999999998


Q ss_pred             CccccCc---c--------------CCCCcEEEecccccccCCCCceeeEEEE--cchhHHHHHHHhhhhcCCCCCHHhH
Q 022194          180 SPVLSRP---L--------------ELGADIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQNAEGSGLAPFDC  240 (301)
Q Consensus       180 ~~~~~~~---~--------------~~~~di~~~S~sK~~~g~~g~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  240 (301)
                      ...+...   .              .....+++.|+||.+.|.+|+|+||++.  .++.+.+.+...... ....+...+
T Consensus       279 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~q  357 (498)
T 3ihj_A          279 DNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSV-RLCPPVSGQ  357 (498)
T ss_dssp             TCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHH-SCCCCHHHH
T ss_pred             ccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhc-cCCCCHHHH
Confidence            7655321   0              0112478999999997777899999985  456676766555443 233344444


Q ss_pred             HHHHcccc--------------cHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          241 WICLRGVK--------------TMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       241 ~~~~~~l~--------------~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      .++...++              ...+.++++.++++.+.+.|++++++.
T Consensus       358 ~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~  406 (498)
T 3ihj_A          358 AAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIH  406 (498)
T ss_dssp             HHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             HHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence            44333322              234555778888999999999887653

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.92  E-value=9.3e-24  Score=188.19  Aligned_cols=212  Identities=23%  Similarity=0.280  Sum_probs=166.8

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      +...++++.++++++.++.+++++|++|+. ++..+ +++||+|+++.|.|+++.    ..++..|.+++.++.+     
T Consensus        63 ~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~  138 (399)
T 2oga_A           63 PELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASW----LAVSATGATPVPVEPHEDHPT  138 (399)
T ss_dssp             HHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCSSSSS
T ss_pred             hhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHH----HHHHHCCCEEEEEecCCCCCC
Confidence            558899999999999988999999999986 55666 789999999999999986    4445678888888753     


Q ss_pred             -CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCC--CcEEEecc--cccc
Q 022194          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSA--TKFI  202 (301)
Q Consensus       128 -d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~--~di~~~S~--sK~~  202 (301)
                       |++++++++++++++|+   ++||+|.+.++++|.++|+++|+++|+|++|+.+........+  .|+++.|+  +|++
T Consensus       139 ~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~  215 (399)
T 2oga_A          139 LDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNL  215 (399)
T ss_dssp             BCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSS
T ss_pred             cCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCccC
Confidence             78999999988888877   5789999999999999999999999999999877533222233  69999999  6999


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhhh------------cCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHh
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQNA------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~  270 (301)
                       +++| ++|+++.+++.+.+.+......            .....++..++++..+++.+.+..++..++++++.+.|++
T Consensus       216 -~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~  293 (399)
T 2oga_A          216 -GCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAG  293 (399)
T ss_dssp             -CCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT
T ss_pred             -CcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             5556 6899988766666655544322            1124567777777777777777777777888889888887


Q ss_pred             CCCcc
Q 022194          271 HPRVK  275 (301)
Q Consensus       271 ~~~v~  275 (301)
                      ++++.
T Consensus       294 ~~g~~  298 (399)
T 2oga_A          294 LPGIG  298 (399)
T ss_dssp             CTTCB
T ss_pred             CCCcc
Confidence            76653

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.92  E-value=7.4e-24  Score=190.62  Aligned_cols=250  Identities=13%  Similarity=0.113  Sum_probs=170.0

Q ss_pred             ceeeecCCCCC-CCCccccCee--ecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhc-CCC--c---eEEecch
Q 022194           11 TLLMNFSNEFD-PYGALSTPLY--QTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLD-KAD--R---ALCFTSG   79 (301)
Q Consensus        11 ~~~~~~~~~~~-~~g~~~~p~~--~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~-~~~--~---~i~~~sG   79 (301)
                      ..+++|+.+.. .+|.  +|.+  ......  .........|.+. |.+. ++++.+++.+.. +.+  +   ++++++|
T Consensus        47 ~~~i~l~~g~~~~~~~--~~~~~~~~a~~~--~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~  122 (430)
T 2x5f_A           47 STTYNATIGMATNKDG--KMFASSLDAMFN--DLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL  122 (430)
T ss_dssp             TCSEECCCSSCEETTE--ECCCHHHHTTBS--SCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred             CCcEEeeeeeccCCCC--chhhHHHHHHHH--hcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence            35789984443 3663  4544  222211  1111123345543 4333 444444443332 443  4   5566666


Q ss_pred             HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhccc-CCcEEEEecCC------CHHHHHhhcCC---CceEEEEeCC
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK-TGVVVKRVNTC------DLDEVASAIGP---WTKLVWVESP  148 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~-~g~~~~~~~~~------d~~~l~~~l~~---~~~~v~i~~~  148 (301)
                      ++++. ++..++++||+|++++|.|+++.    ..++. .|.+++.++.+      |++++++++++   ++++|++++|
T Consensus       123 ~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p  198 (430)
T 2x5f_A          123 THGLSLVGDLFVNQDDTILLPEHNWGNYK----LVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYP  198 (430)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESSCCTHHH----HHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSS
T ss_pred             hHHHHHHHHHHhCCCCEEEEcCCcCccHH----HHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCC
Confidence            79986 56667899999999999999986    45556 78888888752      67889988875   7899999999


Q ss_pred             CCCcccccc---HHHHHHHHHH-----cCCEEEEeCCcCCccccC----c-c----C-CCC---cEEEecccccccCCCC
Q 022194          149 TNPRQQICD---IRKIAEMAHA-----HGALLLVDNSIMSPVLSR----P-L----E-LGA---DIVMHSATKFIAGHSD  207 (301)
Q Consensus       149 ~np~G~~~~---l~~l~~l~~~-----~~~~li~D~~~~~~~~~~----~-~----~-~~~---di~~~S~sK~~~g~~g  207 (301)
                      +||||.+.+   +++|+++|++     +|+++|+||+|+...+..    + .    . .+.   ++++.|+||++ |++|
T Consensus       199 ~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G  277 (430)
T 2x5f_A          199 NNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEF-FAWG  277 (430)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHT-TCGG
T ss_pred             CCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCC-CCCC
Confidence            999999987   8899999999     999999999998654321    1 1    1 346   78999999999 5568


Q ss_pred             ceeeEEEE--cchhHHHHHHHhhhh----cCCCCCHHhHHHHHcccc-c---HHH---HHHHHHHHHHHHHHHHH
Q 022194          208 VMAGVLAV--KGERLAKELYFLQNA----EGSGLAPFDCWICLRGVK-T---MAL---RVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       208 ~~~g~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~-~---~~~---~~~~~~~~~~~l~~~l~  269 (301)
                      ++.|++++  +++.+.+.+......    ...+.++..++++...++ .   ..+   .++++.++++.+.+.|+
T Consensus       278 ~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  352 (430)
T 2x5f_A          278 FRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVY  352 (430)
T ss_dssp             GCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999998  235566655544433    445567776666666555 3   333   66777788888888887

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.92  E-value=4.5e-24  Score=189.16  Aligned_cols=218  Identities=18%  Similarity=0.148  Sum_probs=163.5

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---
Q 022194           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---  127 (301)
                      +...++++.+++++|.+  ++++++||++++. ++..+ +++||+|++++|.|+++...+...++..|.+++.++.+   
T Consensus        59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  138 (390)
T 1elu_A           59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL  138 (390)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCC
Confidence            34788999999999876  5666777789986 55556 68999999999999998765555556678888888863   


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHH----HcCCEEEEeCCcCCccccC-ccCCCCcEEEecc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH----AHGALLLVDNSIMSPVLSR-PLELGADIVMHSA  198 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~----~~~~~li~D~~~~~~~~~~-~~~~~~di~~~S~  198 (301)
                          |++++++.+++++++|++++|+||||.+.|+++|.++|+    ++|+++|+|++|+.+.... ....+.|+++.|+
T Consensus       139 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~  218 (390)
T 1elu_A          139 NQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTG  218 (390)
T ss_dssp             SSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEES
T ss_pred             CccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccc
Confidence                688999999889999999999999999999999999999    9999999999998765432 2245789999999


Q ss_pred             cccccCCCCceeeEEEEcchhHHHHHHHh----------------------hhhcCCCCCHHhHHHHHcccc------cH
Q 022194          199 TKFIAGHSDVMAGVLAVKGERLAKELYFL----------------------QNAEGSGLAPFDCWICLRGVK------TM  250 (301)
Q Consensus       199 sK~~~g~~g~~~g~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~------~~  250 (301)
                      ||++.|+.|  .|+++++++ +.+.+...                      .....++.+.....++..+++      .+
T Consensus       219 ~K~~~~~~g--~G~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~  295 (390)
T 1elu_A          219 HKWFAGPAG--VGGLYIHGD-CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTA  295 (390)
T ss_dssp             SSTTCCCTT--CEEEEECTT-TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCH
T ss_pred             cccccCCCc--eEEEEECHH-hHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            997666655  588888764 33322211                      111122334443333322222      25


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          251 ALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      .+..++..++++++.+.|++++++.
T Consensus       296 ~~~~~~~~~~~~~l~~~L~~~~g~~  320 (390)
T 1elu_A          296 EERYQAICQRSEFLWRGLNQLPHVH  320 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcE
Confidence            6677888889999999998876653

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.92  E-value=1.3e-24  Score=195.74  Aligned_cols=250  Identities=14%  Similarity=0.095  Sum_probs=172.3

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCC-ccccCC-CCch-HHHHHHHHHhhcC----CCceEEecchHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP-YDYTRS-GNPT-RDALESLLAKLDK----ADRALCFTSGMAAL   83 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~-~~y~~~-g~~~-~~~l~~~l~~~~~----~~~~i~~~sG~~ai   83 (301)
                      ..+++|+++...++  .+|.+........   .... ..|... |.+. ++++.+++.+.+|    .++++++++|++++
T Consensus        44 ~~~i~l~~~~~~~~--~~~~v~~a~~~~~---~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al  118 (437)
T 3g0t_A           44 TKFCRMEMGVPGLP--APQIGIETEIQKL---REGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGC  118 (437)
T ss_dssp             CCCEECCCCSCCSC--CCHHHHHHHHHHH---HHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             CCEEeccCcCCCCC--CCHHHHHHHHHHH---hCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHH
Confidence            46789984443343  3444443321110   0012 345443 4333 5666666665544    23556666667998


Q ss_pred             H-HHHhcc--CCCC--eEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------CHHHHHhhc-CCCceEEEEeCCCCC
Q 022194           84 A-AVTHLL--GTGE--EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAI-GPWTKLVWVESPTNP  151 (301)
Q Consensus        84 ~-~~~~~~--~~g~--~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l-~~~~~~v~i~~~~np  151 (301)
                      . ++..++  ++||  +|+++.|.|+++..    .++..|.+++.++.+      |++++++++ ++++++|++++|+||
T Consensus       119 ~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~np  194 (437)
T 3g0t_A          119 FVSFLVANRTHKNREYGTLFIDPGFNLNKL----QCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNP  194 (437)
T ss_dssp             HHHHHHHTTSCTTCSCCEEEEESCCHHHHH----HHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTT
T ss_pred             HHHHHHHhcCCCCCccEEEEeCCCcHhHHH----HHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCC
Confidence            6 556666  8999  99999999999874    445567777777753      789999999 678999999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCCcCCcccc-------------Ccc-CCCCcEEEecccccccCCCCceeeEEE
Q 022194          152 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-------------RPL-ELGADIVMHSATKFIAGHSDVMAGVLA  214 (301)
Q Consensus       152 ~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~-------------~~~-~~~~di~~~S~sK~~~g~~g~~~g~~~  214 (301)
                      ||.+.+   +++|+++|+++|+++|+|++|+...+.             ... ..+.++++.|+||++ |++|++.|+++
T Consensus       195 tG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~  273 (437)
T 3g0t_A          195 TWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF-SYAGQRIGVLM  273 (437)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT-SCGGGCCEEEE
T ss_pred             CCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC-CCccceeEEEE
Confidence            999986   777899999999999999999754332             111 246779999999999 55678999999


Q ss_pred             EcchhHHH-H-----------------HHHhhhhcCCCCCHHhHHHHHccccc-------HHHHHHHHHHHHHHHHHHHH
Q 022194          215 VKGERLAK-E-----------------LYFLQNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       215 ~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~l~~~l~  269 (301)
                      ++++ +.+ .                 +.........+.++..+.++...++.       +.+.++++.++++.+.+.|+
T Consensus       274 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  352 (437)
T 3g0t_A          274 ISGK-LYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFL  352 (437)
T ss_dssp             ECHH-HHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECHH-HhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8754 444 4                 44444444455666665555444432       66777888889999999998


Q ss_pred             hC
Q 022194          270 SH  271 (301)
Q Consensus       270 ~~  271 (301)
                      ++
T Consensus       353 ~~  354 (437)
T 3g0t_A          353 DN  354 (437)
T ss_dssp             TT
T ss_pred             Hc
Confidence            86

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.92  E-value=7.1e-24  Score=187.44  Aligned_cols=212  Identities=15%  Similarity=0.097  Sum_probs=160.8

Q ss_pred             chHHHHHHHHHhhcCCCc----eEEecchHHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---
Q 022194           55 PTRDALESLLAKLDKADR----ALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~----~i~~~sG~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---  127 (301)
                      +..++++++++++++.+.    +++++||++++.++..++++||+|+++++.|++.  .+...++..|.+++.++.+   
T Consensus        35 ~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~  112 (384)
T 3zrp_A           35 EALAYSLKGLRYVMGASKNYQPLIIPGGGTSAMESVTSLLKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSPGD  112 (384)
T ss_dssp             HHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHHHGGGGCCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCSTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHHHHHhhcCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCCCC
Confidence            347889999999998764    5666777888885566789999999999999763  2336667889999999875   


Q ss_pred             --CHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccccc
Q 022194          128 --DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 --d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (301)
                        |++++++++++ ++++|++++++||||.+.|+++|.++|++||+++|+|++++.+... .....++|++++|+||+++
T Consensus       113 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~  192 (384)
T 3zrp_A          113 YVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALG  192 (384)
T ss_dssp             CCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTC
T ss_pred             CCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCccccc
Confidence              89999999986 7999999999999999999999999999999999999999877654 3344578999999999997


Q ss_pred             CCCCceeeEEEEcchhHHHHH-------------HHhh---hh------cC-CCCCHHhHHHHHccccc-----HHHHHH
Q 022194          204 GHSDVMAGVLAVKGERLAKEL-------------YFLQ---NA------EG-SGLAPFDCWICLRGVKT-----MALRVE  255 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~-------------~~~~---~~------~~-~~~~~~~~~~~~~~l~~-----~~~~~~  255 (301)
                      |+.|  .|+++.+++.+ +.+             ....   ..      .. .+.+.....++..+++.     +.+.++
T Consensus       193 ~~~g--~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~  269 (384)
T 3zrp_A          193 SAAG--LGLLLLSPKAL-SILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIK  269 (384)
T ss_dssp             CCSS--EEEEEECHHHH-HHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCCc--eEEEEECHHHH-HHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            7766  68888876543 333             1111   11      11 13444444333333332     456677


Q ss_pred             HHHHHHHHHHHHHHhC
Q 022194          256 KQQDNAQKIAEFLASH  271 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~  271 (301)
                      +..++++++.+.|+++
T Consensus       270 ~~~~~~~~l~~~L~~~  285 (384)
T 3zrp_A          270 RHTMVASAIRAGLEAL  285 (384)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHC
Confidence            8888888999999876

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.92  E-value=9.6e-24  Score=186.27  Aligned_cols=211  Identities=19%  Similarity=0.242  Sum_probs=168.1

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+...++++.++++++.++.+++++|++|+. ++..+ +++||+|+++.+.|+++.    ..++..|.+++.++.+    
T Consensus        37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~  112 (374)
T 3uwc_A           37 GAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASV----GAIVQAGATPVLVDSENGYV  112 (374)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHH----HHHHHTTCEEEEECBCTTSS
T ss_pred             ChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHH----HHHHHcCCEEEEEecCCCCC
Confidence            4568999999999999999999999999986 56667 889999999999999987    4456788999999875    


Q ss_pred             -CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCC--CcEEEeccc--ccc
Q 022194          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KFI  202 (301)
Q Consensus       128 -d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~--~di~~~S~s--K~~  202 (301)
                       |++++++++++++++|+   ++||+|...++++|+++|+++|+++|+|++|+.+........+  .|+++.|+|  |++
T Consensus       113 ~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l  189 (374)
T 3uwc_A          113 IDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNL  189 (374)
T ss_dssp             BCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSSSS
T ss_pred             cCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCCcC
Confidence             89999999998888887   8999999999999999999999999999999977543333233  699999977  999


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhhh------------cCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHh
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQNA------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ++ .|. +|+++.+++.+.+.+......            ....+.+..+......++.+.+..++..++.+++.+.|++
T Consensus       190 ~~-~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  267 (374)
T 3uwc_A          190 NV-WSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVD  267 (374)
T ss_dssp             CC-SSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGG
T ss_pred             Cc-cce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            54 333 788888877776665544321            1122455556555666667777778888888899999988


Q ss_pred             CCC
Q 022194          271 HPR  273 (301)
Q Consensus       271 ~~~  273 (301)
                      .++
T Consensus       268 ~~~  270 (374)
T 3uwc_A          268 LSE  270 (374)
T ss_dssp             GTT
T ss_pred             CCC
Confidence            765

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.92  E-value=1.9e-24  Score=192.92  Aligned_cols=211  Identities=17%  Similarity=0.204  Sum_probs=151.0

Q ss_pred             HHHHHHHHHhhcCC----CceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           57 RDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ++++.+++.+.+|.    ++++++++|++|+. ++..++++||+|+++.|.|+++.    ..++..|.+++.++.+    
T Consensus        81 ~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~  156 (407)
T 2zc0_A           81 REELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTL----LAFEQLGAKIEGVPVDNDGM  156 (407)
T ss_dssp             HHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTTCEEEEEEEETTEE
T ss_pred             HHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCEEEEcccCCCCC
Confidence            55666666555572    24455555579986 56667789999999999999886    4455678888888753    


Q ss_pred             CHHHHHhhcC----C--CceEE-EEeCCCCCccccccHH---HHHHHHHHcCCEEEEeCCcCCccccC-----cc---CC
Q 022194          128 DLDEVASAIG----P--WTKLV-WVESPTNPRQQICDIR---KIAEMAHAHGALLLVDNSIMSPVLSR-----PL---EL  189 (301)
Q Consensus       128 d~~~l~~~l~----~--~~~~v-~i~~~~np~G~~~~l~---~l~~l~~~~~~~li~D~~~~~~~~~~-----~~---~~  189 (301)
                      |+++++++++    +  ++++| ++++|+||||.+.|.+   +|+++|++||+++|+||+|+.+.+..     ..   ..
T Consensus       157 d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  236 (407)
T 2zc0_A          157 RVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNE  236 (407)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSS
T ss_pred             CHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCC
Confidence            7899998887    5  78887 4689999999998865   89999999999999999998654421     11   12


Q ss_pred             CCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc-------cHHHHHHHHHHHHH
Q 022194          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-------TMALRVEKQQDNAQ  262 (301)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~  262 (301)
                      +.++++.|+||+++  +|+++|+++++ +.+.+.+...........++..+.++...++       .+.+.++++.++++
T Consensus       237 ~~~i~~~s~sK~~~--~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  313 (407)
T 2zc0_A          237 GRVIVAGTLSKVLG--TGFRIGWIIAE-GEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRD  313 (407)
T ss_dssp             CCEEEEEESTTTTC--TTSCCEEEECC-HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHH
T ss_pred             CCEEEEcccccccC--CCcceEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            46799999999995  57889999987 5566666555544444445555544433332       23345566777788


Q ss_pred             HHHHHHHh-CCCc
Q 022194          263 KIAEFLAS-HPRV  274 (301)
Q Consensus       263 ~l~~~l~~-~~~v  274 (301)
                      ++.+.|++ .+++
T Consensus       314 ~l~~~L~~~~~~~  326 (407)
T 2zc0_A          314 IMLKALENHLPNA  326 (407)
T ss_dssp             HHHHHHHHHCTTS
T ss_pred             HHHHHHHHhCCCC
Confidence            88888876 3544

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.92  E-value=6e-24  Score=191.33  Aligned_cols=255  Identities=15%  Similarity=0.165  Sum_probs=165.1

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeec-CCC-CCCCCccccCC-CCch-HHHHHHHHHhhcCCC-ceEEecch-HHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQ-PSA-TENGPYDYTRS-GNPT-RDALESLLAKLDKAD-RALCFTSG-MAALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~-~~~-~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~   84 (301)
                      ..+++|+ .++|. ...+|.+....... ... .......|.+. |.+. ++++.+++.+.++.+ +.+++++| ++++.
T Consensus        56 ~~~i~l~-~~~~~-~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~  133 (432)
T 3ei9_A           56 AQVISLG-IGDTT-EPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDIS  133 (432)
T ss_dssp             CCCEECS-SCCCC-SCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHH
T ss_pred             CCeEEcc-CCCCC-CCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHH
Confidence            3689999 67776 33444444332111 110 01122345433 4333 555555554333543 45555555 68887


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC---------cEEEEecCCCHH----HHHhhcCCCceEEEEeCCCCC
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLD----EVASAIGPWTKLVWVESPTNP  151 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g---------~~~~~~~~~d~~----~l~~~l~~~~~~v~i~~~~np  151 (301)
                      ++..++++||+|++++|.|+++...+.. ....+         .+++.++.++.+    ++++  .+++++|++++|+||
T Consensus       134 ~l~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~v~l~~p~NP  210 (432)
T 3ei9_A          134 RLQVMFGSNVTIAVQDPSYPAYVDSSVI-MGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST--VGRTDIIFFCSPNNP  210 (432)
T ss_dssp             HHHHHHCTTCCEEEEESCCTHHHHHHHH-HTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG--CCCCSEEEEESSCTT
T ss_pred             HHHHHcCCCCEEEEeCCCCHHHHHHHHH-cCCcccccccccccCceEEeccCcccCCcCChhh--CCCCCEEEEeCCCCC
Confidence            7788899999999999999999765432 22222         234555543221    2222  357899999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----cc----CCCCcEEEecccccccCCCCceeeEEEEcchh-
Q 022194          152 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGER-  219 (301)
Q Consensus       152 ~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~-  219 (301)
                      ||.+.+   +++|+++|++||+++|+||+|+.+....    ..    ..+.++++.|+||++ |.+|++.|+++++++. 
T Consensus       211 tG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~r~G~~~~~~~~~  289 (432)
T 3ei9_A          211 TGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYA-GFTGVRLGWTVIPKKLL  289 (432)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHH-CTTTTCCEEEECCTTCB
T ss_pred             CCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhcc-CCcccceEEEEEChHHh
Confidence            999975   7778888999999999999998543321    11    124679999999999 6678899999998765 


Q ss_pred             ------HHHHHHHhhhhcCCCCCHHhHHHHHcccc-----cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          220 ------LAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       220 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                            +.+.+.........+.++..+.++...+.     .+.+.++++.++++.+.+.|+++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  352 (432)
T 3ei9_A          290 YSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL  352 (432)
T ss_dssp             CTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence                  25555554444455566666665555443     34667778888899999999876

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.92  E-value=1.3e-24  Score=195.32  Aligned_cols=217  Identities=15%  Similarity=0.174  Sum_probs=155.5

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcC---CC-ceEEecc-hHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDK---AD-RALCFTS-GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~---~~-~~i~~~s-G~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      .|.+. |.+. ++++.+++.+.+|   .+ +.+++++ |++++. ++..++++||+|++++|.|+++.    ..++..|.
T Consensus        80 ~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~g~  155 (425)
T 1vp4_A           80 QYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAI----NAFRQYLA  155 (425)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcCC
Confidence            34443 4443 6666666665557   33 4455544 578885 66667889999999999999987    44456788


Q ss_pred             EEEEecCC----CHHHHHhhcCC--------CceEE-EEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccc
Q 022194          120 VVKRVNTC----DLDEVASAIGP--------WTKLV-WVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (301)
Q Consensus       120 ~~~~~~~~----d~~~l~~~l~~--------~~~~v-~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~  183 (301)
                      +++.++.+    |++++++++++        ++++| ++++|+||||.+.+   +++|+++|+++|+++|+||+|+.+.+
T Consensus       156 ~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  235 (425)
T 1vp4_A          156 NFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRY  235 (425)
T ss_dssp             EEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBC
T ss_pred             EEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccC
Confidence            88887753    78999988865        68888 47899999999976   67899999999999999999986544


Q ss_pred             cC-----c---cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc------
Q 022194          184 SR-----P---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------  249 (301)
Q Consensus       184 ~~-----~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------  249 (301)
                      ..     .   ...+.++++.|+||+++  +|+|.|+++++ +.+.+.+.........+.++..++++...++.      
T Consensus       236 ~g~~~~~~~~~~~~~~~i~~~s~sK~~~--~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  312 (425)
T 1vp4_A          236 EGETVDPIFKIGGPERVVLLNTFSKVLA--PGLRIGMVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQ  312 (425)
T ss_dssp             SSCCCCCHHHHHCTTTEEEEEESTTTTC--GGGCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHH
T ss_pred             CCCCCcCHHHhCCCCCEEEEeccccccc--cccceEEEeeC-HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHH
Confidence            21     1   12356899999999994  68899999987 45666555544444344566666555544432      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC
Q 022194          250 MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       250 ~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.+.++++.++++.+.+.|+++
T Consensus       313 ~~~~~~~~~~~~~~l~~~L~~~  334 (425)
T 1vp4_A          313 LKPTIELYRRKRTVMLNALEEY  334 (425)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            3455666778888888888763

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.92  E-value=1.4e-23  Score=189.14  Aligned_cols=208  Identities=16%  Similarity=0.190  Sum_probs=149.9

Q ss_pred             HHHHHHHHHhhcC------CCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcc-cCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDK------ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-KTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~------~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~-~~g~~~~~~~~~-  127 (301)
                      ++++.+++.+..+      .+++++++||++|+. ++..++++||.|+++.|.|+++.    ..+. ..|.+++.++.+ 
T Consensus        92 ~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~~g~~~~~~~~~~  167 (435)
T 3piu_A           92 KKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFD----RDLKWRTGVEIVPIHCTS  167 (435)
T ss_dssp             HHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHTTTTTCCEEEEEECCG
T ss_pred             HHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHH----HHHHHhcCCEEEEeeCCC
Confidence            4445555544333      346666777789986 66677899999999999999886    3444 678899888864 


Q ss_pred             ------CHHHHHhhcCC------CceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccCc------
Q 022194          128 ------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP------  186 (301)
Q Consensus       128 ------d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~~------  186 (301)
                            |++++++++++      ++++|++++|+||||.+.+   +++|+++|++||+++|+||+|+.+.+...      
T Consensus       168 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~  247 (435)
T 3piu_A          168 SNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVM  247 (435)
T ss_dssp             GGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHH
T ss_pred             ccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHH
Confidence                  78999998864      7899999999999999975   68899999999999999999986443211      


Q ss_pred             ---cC---------CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc------
Q 022194          187 ---LE---------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK------  248 (301)
Q Consensus       187 ---~~---------~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------  248 (301)
                         .+         .+.++++.|+||++ |.+|++.|+++++++.+.+.+......  ...++....++...++      
T Consensus       248 ~~~~~~~~d~~~~~~~~~i~i~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~  324 (435)
T 3piu_A          248 EVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQHLLSAMLSDKKLTK  324 (435)
T ss_dssp             HHHHC-------CGGGGEEEEEESSSSS-CCGGGCEEEEEESCHHHHHHHHHHGGG--SCCCHHHHHHHHHHHHCHHHHH
T ss_pred             HhccccccccccCCCCCEEEEEeeeccc-CCCceeEEEEEeCCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhcChHHHH
Confidence               01         23458999999999 556889999999777676655443332  2334444433333222      


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          249 -TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       249 -~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                       .+.+.++++.++.+++.+.|++.
T Consensus       325 ~~~~~~~~~~~~~~~~l~~~L~~~  348 (435)
T 3piu_A          325 NYIAENHKRLKQRQKKLVSGLQKS  348 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence             23455677778888888888875

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.92  E-value=2.9e-24  Score=191.14  Aligned_cols=253  Identities=13%  Similarity=0.052  Sum_probs=171.3

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHH-HH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-VT   87 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~-~~   87 (301)
                      ..++||+++  ..++|.. +|.+........+   ...+.+..+..+.+++++++++++++.+++++++||++|+.. +.
T Consensus        36 ~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~---~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~  111 (395)
T 3nx3_A           36 KKYLDFSSGIGVCALGYN-HAKFNAKIKAQVD---KLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMK  111 (395)
T ss_dssp             CEEEESSHHHHTCTTCBS-CHHHHHHHHHHHT---TCSCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHH
T ss_pred             CEEEECCCcHHhccCCCC-CHHHHHHHHHHHH---hccccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHH
Confidence            468999844  4678874 4444433222211   122233333456799999999999998888899999999864 33


Q ss_pred             hcc-------CCCCeEEEcCCCCccHHHHH---------hhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCC
Q 022194           88 HLL-------GTGEEIVAGDDLYGGTDRLL---------SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (301)
Q Consensus        88 ~~~-------~~g~~Vlv~~~~y~~~~~~~---------~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np  151 (301)
                      .+.       .++++|++.+|.||++....         .......+..+..++.+|++++++++++++++|++++++|+
T Consensus       112 ~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~  191 (395)
T 3nx3_A          112 TARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVNEKTCAIILESVQGE  191 (395)
T ss_dssp             HHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTCCTTEEEEEEESEECT
T ss_pred             HHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhccCCeEEEEEeCccCC
Confidence            332       45799999999999874221         12223445677788888999999999988999999999999


Q ss_pred             cccccc----HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          152 RQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       152 ~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                      +|.+.+    +++|+++|++||+++|+||+|... ...   .....+....+.|+||.+++  |++.|+++++++.+.+.
T Consensus       192 ~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~--G~~~G~~~~~~~~~~~~  269 (395)
T 3nx3_A          192 GGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGC--GLSVGAFVINQKVASNS  269 (395)
T ss_dssp             TSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGTT--TSCCEEEEECHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecccccC--CCceEEEEEchhhhhhh
Confidence            999876    999999999999999999998732 221   11222333445578999954  67899999876542554


Q ss_pred             HHHhhhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHH
Q 022194          224 LYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~  269 (301)
                      +.......++..++..++++..+++.+  ++..++..++.+++++.|+
T Consensus       270 ~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~  317 (395)
T 3nx3_A          270 LEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLD  317 (395)
T ss_dssp             SCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            433333344566777777776666543  2334455555555555554

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.92  E-value=6.6e-23  Score=184.28  Aligned_cols=218  Identities=14%  Similarity=0.173  Sum_probs=155.4

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcC----C--CceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDK----A--DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~----~--~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      .|... |.+. ++++.+++.+.+|    .  ++.+++++|++++. ++..++++||+|++++|.|+++..   .+....|
T Consensus        78 ~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~---~~~~~~g  154 (428)
T 1iay_A           78 NFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR---DLRWRTG  154 (428)
T ss_dssp             HCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH---HTTTTTC
T ss_pred             CCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHH---HHHHhcC
Confidence            34433 4333 5555555555444    2  34455555568885 666778899999999999999862   2345678


Q ss_pred             cEEEEecCC-------CHHHHHhhcC------CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcc
Q 022194          119 VVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~l~------~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~  182 (301)
                      .+++.++.+       |+++++++++      .++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+.+.
T Consensus       155 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~  234 (428)
T 1iay_A          155 VQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATV  234 (428)
T ss_dssp             CEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred             CEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccc
Confidence            899888753       7888988875      36899999999999999998   9999999999999999999998643


Q ss_pred             ccC----c-c--CCC-------Cc--EEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcc
Q 022194          183 LSR----P-L--ELG-------AD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (301)
Q Consensus       183 ~~~----~-~--~~~-------~d--i~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (301)
                      +..    . .  ..+       .|  +++.|+||++ |.+|+|.|+++++++.+.+.+.....  ..+.++..+.++...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~-g~~Glr~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~  311 (428)
T 1iay_A          235 FDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYSFNDDVVNCARKMSS--FGLVSTQTQYFLAAM  311 (428)
T ss_dssp             CSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEESCHHHHHHHHHHHT--TSCCCHHHHHHHHHH
T ss_pred             cCCCCccCHHHhccccccccCCCCcEEEEecchhhc-CCCCceEEEEEeCCHHHHHHHHHHHh--cccCCHHHHHHHHHH
Confidence            321    1 1  111       45  8999999999 55788999999966666665554332  234566666665555


Q ss_pred             ccc-------HHHHHHHHHHHHHHHHHHHHhC
Q 022194          247 VKT-------MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       247 l~~-------~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++.       +.+.++++.++++++.+.|+++
T Consensus       312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  343 (428)
T 1iay_A          312 LSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV  343 (428)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            543       2445667778888888888876

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.92  E-value=1e-23  Score=187.13  Aligned_cols=211  Identities=20%  Similarity=0.284  Sum_probs=164.0

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+...++++.++++++.++.+++++|++|+. ++..+ +++||+|+++.+.|+++.    ..++..|.+++.++.+    
T Consensus        37 ~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~  112 (388)
T 1b9h_A           37 GDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSS----QAAQRLGAVTVPVDVDAATY  112 (388)
T ss_dssp             CSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTC
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHH----HHHHHcCCEEEEEecCCCcC
Confidence            4568999999999999998999999999986 55666 789999999999999997    4446678888888753    


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC---ccCCCCcEEEeccc--c
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSAT--K  200 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~---~~~~~~di~~~S~s--K  200 (301)
                        |++++++++++++++|+   |+||+|.+.++++|+++|+++|+++|+|++|+.+....   ....+ |+++.|||  |
T Consensus       113 ~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K  188 (388)
T 1b9h_A          113 NLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGK  188 (388)
T ss_dssp             CBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTS
T ss_pred             CCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEEEccCCC
Confidence              78999999988888877   89999999999999999999999999999998765432   11223 78888887  6


Q ss_pred             cccCCCCceeeEEEEcchhH--HHHHHHhhhh-------------cCC--CCCHHhHHHHHcccccHHHHHHHHHHHHHH
Q 022194          201 FIAGHSDVMAGVLAVKGERL--AKELYFLQNA-------------EGS--GLAPFDCWICLRGVKTMALRVEKQQDNAQK  263 (301)
Q Consensus       201 ~~~g~~g~~~g~~~~~~~~~--~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (301)
                      +++|+   ++|+++++++.+  .+.+......             .+.  .+++..++++...++.+.+..+++.+++++
T Consensus       189 ~l~g~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~  265 (388)
T 1b9h_A          189 LMTAG---EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTL  265 (388)
T ss_dssp             SSCSS---SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             cccCC---CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66442   579999887645  4444332211             011  245566666666777788888888899999


Q ss_pred             HHHHHHhCCCcc
Q 022194          264 IAEFLASHPRVK  275 (301)
Q Consensus       264 l~~~l~~~~~v~  275 (301)
                      +.+.|++++++.
T Consensus       266 l~~~L~~~~~~~  277 (388)
T 1b9h_A          266 LSRLLGAIDGVV  277 (388)
T ss_dssp             HHHHHHTSTTCE
T ss_pred             HHHHhccCCCcc
Confidence            999999887654

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.92  E-value=2.4e-24  Score=190.46  Aligned_cols=199  Identities=19%  Similarity=0.219  Sum_probs=151.0

Q ss_pred             HHHHHHHHHhhcCC---CceEEecchHHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHH
Q 022194           57 RDALESLLAKLDKA---DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA  133 (301)
Q Consensus        57 ~~~l~~~l~~~~~~---~~~i~~~sG~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~  133 (301)
                      .+++++.+++++|.   +++++++||++++.+++..+ +||+|++++|.|+++...+. .++..|.+++.+  .|+++++
T Consensus        60 ~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~-~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v--~d~~~l~  135 (374)
T 2aeu_A           60 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES--DKVGEIL  135 (374)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE--SCHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC-CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe--CCHHHHH
Confidence            46777778888898   67788888899986444444 99999999999988765443 566778898888  6899999


Q ss_pred             hhcCCCceE-EEEeCCCCCcc-ccccHHHHHHHHHHcCCEEEEeCCcCCccc---cC--ccCCCCcEEEecccccccCCC
Q 022194          134 SAIGPWTKL-VWVESPTNPRQ-QICDIRKIAEMAHAHGALLLVDNSIMSPVL---SR--PLELGADIVMHSATKFIAGHS  206 (301)
Q Consensus       134 ~~l~~~~~~-v~i~~~~np~G-~~~~l~~l~~l~~~~~~~li~D~~~~~~~~---~~--~~~~~~di~~~S~sK~~~g~~  206 (301)
                      ++ ++++++ |++++|+||+| ...++++|.++|+++|+++|+|++|+.+..   ..  +...+.|++++|+||+++|+ 
T Consensus       136 ~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~-  213 (374)
T 2aeu_A          136 NK-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP-  213 (374)
T ss_dssp             TT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC-
T ss_pred             hc-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCc-
Confidence            88 778999 99999999999 888999999999999999999999876531   11  33457899999999998653 


Q ss_pred             CceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH-HHHHHHHHHHHHH
Q 022194          207 DVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA-LRVEKQQDNAQKI  264 (301)
Q Consensus       207 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~l  264 (301)
                        ++|++++++ .+.+.+.......+...++..++++..+++.+. ++.+++.++++.+
T Consensus       214 --~~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~  269 (374)
T 2aeu_A          214 --RGGLLAGKK-ELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNF  269 (374)
T ss_dssp             --SCEEEEEEH-HHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             --ceEEEEECH-HHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence              679988875 566666655555555667777766666655432 2445555555554

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.92  E-value=2.4e-24  Score=190.01  Aligned_cols=206  Identities=16%  Similarity=0.195  Sum_probs=152.5

Q ss_pred             HHHHHHHHHhhcC--CC-ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           57 RDALESLLAKLDK--AD-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~--~~-~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ++++.+++.+.+|  .+ +.+++++| ++++. ++..++++||+|++++|.|+++.    ..++..|.+++.++.+    
T Consensus        75 ~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~----~~~~~~g~~~~~v~~~~~~~  150 (369)
T 3cq5_A           75 RDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHP----ILAKGTHTEFIAVSRGADFR  150 (369)
T ss_dssp             HHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHH----HHHHHTTCEEEEEECCTTSS
T ss_pred             HHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEecCCcCCC
Confidence            4455555554443  32 45555555 68885 66667899999999999999886    4455678888888753    


Q ss_pred             -CHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-Cc----cCCC-CcEEEeccc
Q 022194          128 -DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RP----LELG-ADIVMHSAT  199 (301)
Q Consensus       128 -d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~----~~~~-~di~~~S~s  199 (301)
                       |++++++++++ ++++|++++|+||||.+.|++++.++++.+++++|+||+|+.+... ..    ...+ .++++.|+|
T Consensus       151 ~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  230 (369)
T 3cq5_A          151 IDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMS  230 (369)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESS
T ss_pred             CCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEech
Confidence             78999998876 8899999999999999999999999999999999999999866532 11    1235 679999999


Q ss_pred             ccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc---cHHHHHHHHHHHHHHHHHHHHh
Q 022194          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       200 K~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~  270 (301)
                      |++ |++|++.|++++++ .+.+.+.....  ..+.++..++++...++   .+.+.++++.++++++.+.|++
T Consensus       231 K~~-~~~G~r~G~~~~~~-~~~~~l~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  300 (369)
T 3cq5_A          231 KAF-DFAGGRLGYFVANP-AFIDAVMLVRL--PYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEE  300 (369)
T ss_dssp             STT-SCGGGCCEEEEECT-HHHHHHHTTSC--TTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             Hhc-CCcccceEEEEeCH-HHHHHHHHcCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999 55678899999975 45554443332  23466666666555554   3455667788888888888876

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.92  E-value=9.9e-24  Score=189.06  Aligned_cols=220  Identities=15%  Similarity=0.151  Sum_probs=155.8

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      ..|.+. |.+. ++++.+++.+..+.+   ++++++||++++. ++..++++||+|++++|.|+++.    ..++..|.+
T Consensus        74 ~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~  149 (418)
T 3rq1_A           74 VGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYR----VICSDTGRT  149 (418)
T ss_dssp             HSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHH----HHHHHTTCE
T ss_pred             CCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHH----HHHHHcCCE
Confidence            456665 6665 788888887777766   6667777789986 66778899999999999999986    555678889


Q ss_pred             EEEecCC------CHHHHHhhcCC----Cce-EEEEeCC-CCCcccccc---HHHHHHHHH------HcCCEEEEeCCcC
Q 022194          121 VKRVNTC------DLDEVASAIGP----WTK-LVWVESP-TNPRQQICD---IRKIAEMAH------AHGALLLVDNSIM  179 (301)
Q Consensus       121 ~~~~~~~------d~~~l~~~l~~----~~~-~v~i~~~-~np~G~~~~---l~~l~~l~~------~~~~~li~D~~~~  179 (301)
                      ++.++.+      |++++++++++    +++ ++++++| +||||.+.+   +++|+++|+      ++|+++|+||+|.
T Consensus       150 ~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~  229 (418)
T 3rq1_A          150 LVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYL  229 (418)
T ss_dssp             EEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTG
T ss_pred             EEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccc
Confidence            9988852      78999988874    555 8888999 999999987   555666666      8999999999986


Q ss_pred             CccccC---------ccCCCC---cEEEecccccccCCCCceeeEEEE--cchhHHHHHHHhhhh----cCCCCCHHhHH
Q 022194          180 SPVLSR---------PLELGA---DIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQNA----EGSGLAPFDCW  241 (301)
Q Consensus       180 ~~~~~~---------~~~~~~---di~~~S~sK~~~g~~g~~~g~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~  241 (301)
                      ......         ......   .+++.|+||++ |.+|+|.|++++  +++.+.+.+......    .....+...+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (418)
T 3rq1_A          230 DYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGF-TMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMR  308 (418)
T ss_dssp             GGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTT-TCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred             cccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCC-cCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHH
Confidence            433211         111112   38889999999 567889999988  245565655443322    12345566555


Q ss_pred             HHHcccccH----------HHHHHHHHHHHHHHHHHHHhC
Q 022194          242 ICLRGVKTM----------ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       242 ~~~~~l~~~----------~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++...++..          .+.++++.++.+.+.+.|+++
T Consensus       309 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  348 (418)
T 3rq1_A          309 TMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV  348 (418)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            554444331          234456677777788888764

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.92  E-value=7.2e-24  Score=188.27  Aligned_cols=210  Identities=16%  Similarity=0.167  Sum_probs=159.6

Q ss_pred             chHHHHHHHHHhhcCCC-c--eEEecchHHHHH-HHHhccCCCCeEEEcCCCCcc--HHHHHhhhcccCCcEEEEecC--
Q 022194           55 PTRDALESLLAKLDKAD-R--ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGG--TDRLLSRVTPKTGVVVKRVNT--  126 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~-~--~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~--~~~~~~~~~~~~g~~~~~~~~--  126 (301)
                      +.++++++++++++|.+ +  +++++||++|+. ++..++++||+|++++|.|++  +.    ..++..|.+++.++.  
T Consensus        67 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~~~g~~~~~v~~~~  142 (393)
T 1vjo_A           67 ALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLV----DMAGRYGADVRTISKPW  142 (393)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHH----HHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHH----HHHHHcCCceEEEecCC
Confidence            34889999999999876 3  455566679986 666678999999999999998  54    555677888888885  


Q ss_pred             ---CCHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccc
Q 022194          127 ---CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (301)
Q Consensus       127 ---~d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~  201 (301)
                         .|++++++++++ ++++|++++|+||||.+.|+++|+++|+++|+++|+||+|+.+... .....++|+++.|+||+
T Consensus       143 ~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~  222 (393)
T 1vjo_A          143 GEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKG  222 (393)
T ss_dssp             TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSST
T ss_pred             CCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCccc
Confidence               378999999987 8999999999999999999999999999999999999999965433 22334689999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHh----h---------------hhcCC-CCCHHhHHHHHccccc-----HHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFL----Q---------------NAEGS-GLAPFDCWICLRGVKT-----MALRVEK  256 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~----~---------------~~~~~-~~~~~~~~~~~~~l~~-----~~~~~~~  256 (301)
                      +++++  +.|+++++++ +.+.+...    .               ..... +.+.....++..+++.     +.+.+++
T Consensus       223 l~~~~--~~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~  299 (393)
T 1vjo_A          223 LGCSP--GASPFTMSSR-AIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQR  299 (393)
T ss_dssp             TCSCS--SCEEEEECHH-HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccCCC--ceEEEEECHH-HHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            97765  4699988754 44443211    0               01112 4555555555444443     3456678


Q ss_pred             HHHHHHHHHHHHHhC
Q 022194          257 QQDNAQKIAEFLASH  271 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~  271 (301)
                      +.++++++.+.|++.
T Consensus       300 ~~~~~~~l~~~L~~~  314 (393)
T 1vjo_A          300 HQKNVEYLWERLEDI  314 (393)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHc
Confidence            888888999999875

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.92  E-value=9.6e-24  Score=186.37  Aligned_cols=210  Identities=20%  Similarity=0.188  Sum_probs=165.5

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+..+++++.++++++.+++++++||++|+. ++..+ +++||+|+++.+.|+++..    .+...|.+++.++.+    
T Consensus        35 ~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~  110 (373)
T 3frk_A           35 GDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATAL----AVSYTGAKPIFVEPDIRTY  110 (373)
T ss_dssp             SHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHH----HHHHHSCEEEEECEETTTT
T ss_pred             CchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHH----HHHHcCCEEEEEecccccc
Confidence            3568999999999999999999999999986 66667 7899999999999999874    345668888888765    


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCC--CcEEEeccc--cc
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KF  201 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~--~di~~~S~s--K~  201 (301)
                        |++++++++++++++|+   ++||+|...|+++|.++|+++|+++|+|++|+.+........+  .|+++.||+  |+
T Consensus       111 ~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~  187 (373)
T 3frk_A          111 NIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPAKN  187 (373)
T ss_dssp             EECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             CcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcCCCc
Confidence              89999999998898888   6789999999999999999999999999999977654433344  799999977  99


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhhc------------CCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAE------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~  269 (301)
                      +++ .| .+|+++.+++.+.+.+.......            ...+++..++.....++.+.+..++..++.+++.+.|+
T Consensus       188 l~~-~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~  265 (373)
T 3frk_A          188 LGS-LG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGIN  265 (373)
T ss_dssp             SCC-SS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCc-cc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            954 23 37899888777766655443321            12345666666555566677777788888888888887


Q ss_pred             hCC
Q 022194          270 SHP  272 (301)
Q Consensus       270 ~~~  272 (301)
                      +.+
T Consensus       266 ~~~  268 (373)
T 3frk_A          266 NPN  268 (373)
T ss_dssp             CTT
T ss_pred             cCc
Confidence            765

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.92  E-value=2e-23  Score=185.28  Aligned_cols=211  Identities=14%  Similarity=0.092  Sum_probs=155.4

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      ..++++++++++++.+  ++++++||++++. ++..++++||+|+++++.|+++.  +...++..|.+++.++.+     
T Consensus        43 ~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~  120 (392)
T 2z9v_A           43 LYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNEAI  120 (392)
T ss_dssp             HHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTSCC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCCCC
Confidence            3788999999999875  4555566689986 55666899999999999998773  234445567788877753     


Q ss_pred             CHHHHHhhc--CCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccC
Q 022194          128 DLDEVASAI--GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       128 d~~~l~~~l--~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (301)
                      |++++++++  .+++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+... .....+.|++++|+||+++|
T Consensus       121 d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~  200 (392)
T 2z9v_A          121 DPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGA  200 (392)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCC
T ss_pred             CHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccC
Confidence            789999998  457899999999999999999999999999999999999999876543 23334789999999998877


Q ss_pred             CCCceeeEEEEcchhHHHHHHHhh--------------------hhcCCCCCHHhHHHHHccccc-----HHHHHHHHHH
Q 022194          205 HSDVMAGVLAVKGERLAKELYFLQ--------------------NAEGSGLAPFDCWICLRGVKT-----MALRVEKQQD  259 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~  259 (301)
                      ++|+  |++++++ .+.+.+....                    .....+.+.....++..+++.     +.+.+++..+
T Consensus       201 ~~g~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  277 (392)
T 2z9v_A          201 PPGL--TMMGVSE-RAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHAL  277 (392)
T ss_dssp             CSCC--EEEEECH-HHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CCce--eEEEECH-HHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            7775  8888875 4444443211                    011123344333333333332     3456677788


Q ss_pred             HHHHHHHHHHhC
Q 022194          260 NAQKIAEFLASH  271 (301)
Q Consensus       260 ~~~~l~~~l~~~  271 (301)
                      +++++.+.|+++
T Consensus       278 ~~~~l~~~L~~~  289 (392)
T 2z9v_A          278 TAKAMRAGVTAM  289 (392)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            888888888875

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.91  E-value=1.1e-23  Score=187.87  Aligned_cols=215  Identities=20%  Similarity=0.129  Sum_probs=157.9

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEecchHHHHHHH-Hhc---cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAV-THL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~~~-~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      +..+++++++++++|.+  +++++++|++++.++ ..+   +++||+|+++++.|+++...+....+..|.+++.++.+ 
T Consensus        69 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~  148 (406)
T 3cai_A           69 AVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI  148 (406)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCT
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCc
Confidence            44789999999999986  455555557888644 445   68999999999999988655544444468888888865 


Q ss_pred             -----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccc
Q 022194          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (301)
Q Consensus       128 -----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~  201 (301)
                           |++++++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+... .....++|+++.|+||+
T Consensus       149 ~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~  228 (406)
T 3cai_A          149 ETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAW  228 (406)
T ss_dssp             TTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGG
T ss_pred             ccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhh
Confidence                 899999999989999999999999999999999999999999999999999876543 22345789999999998


Q ss_pred             ccCCCCceee-EEEEcchhHHHHHHHhhh---------hcCCCCCHHhHHHHHcccc-------------------cHHH
Q 022194          202 IAGHSDVMAG-VLAVKGERLAKELYFLQN---------AEGSGLAPFDCWICLRGVK-------------------TMAL  252 (301)
Q Consensus       202 ~~g~~g~~~g-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~-------------------~~~~  252 (301)
                      + ||.   +| ++++++ .+.+.+.....         ....+.+.....++..+++                   .+.+
T Consensus       229 ~-g~~---~G~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~  303 (406)
T 3cai_A          229 G-GPP---IGAMVFRDP-SVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQS  303 (406)
T ss_dssp             T-SCS---CEEEEESCH-HHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHH
T ss_pred             c-CCC---cCeEEEEeh-HHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHH
Confidence            7 543   56 888875 44443322211         1123334433322222221                   2455


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCc
Q 022194          253 RVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      ..++..++++++.+.|++++++
T Consensus       304 ~~~~~~~~~~~l~~~L~~~~~~  325 (406)
T 3cai_A          304 ADAYLNRVFDYLMVSLRSLPLV  325 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTE
T ss_pred             HHHHHHHHHHHHHHHHhcCCCe
Confidence            6677788888999999887665

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.91  E-value=3.4e-23  Score=184.16  Aligned_cols=256  Identities=14%  Similarity=0.097  Sum_probs=167.3

Q ss_pred             ceeeecCCCC--CCCCcccc-CeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcC----CC--ceEEecch
Q 022194           11 TLLMNFSNEF--DPYGALST-PLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDK----AD--RALCFTSG   79 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~-p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~----~~--~~i~~~sG   79 (301)
                      ..+++|+.+.  |+.+..+. |.+....... .........|.+. |.+. ++++.+++.+..+    .+  ++++++||
T Consensus        26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~-~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~  104 (397)
T 3fsl_A           26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARL-NAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGG  104 (397)
T ss_dssp             SCCEECSSCCCCCTTSCCCCCHHHHHHHHHH-HHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred             CCeEEEeeeEEECCCCCccCcHHHHHHHHhh-ccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCc
Confidence            4689998432  44444332 2233221110 1111123455553 5544 6677777665544    33  44555666


Q ss_pred             HHHHHHH---HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC----C---CHHHHHhhcC---CCceEEEEe
Q 022194           80 MAALAAV---THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----C---DLDEVASAIG---PWTKLVWVE  146 (301)
Q Consensus        80 ~~ai~~~---~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~----~---d~~~l~~~l~---~~~~~v~i~  146 (301)
                      ++++.++   .+++++||+|+++.|.|+++.    ..++..|.+++.++.    +   |++++++.++   +++++++++
T Consensus       105 ~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~  180 (397)
T 3fsl_A          105 SGALKVGADFLKRYFPESGVWVSDPTWENHV----AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHP  180 (397)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEESSCCHHHH----HHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECS
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEeCCCchhHH----HHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeC
Confidence            7898644   456899999999999999986    455667888888887    2   8999999997   567899999


Q ss_pred             CCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC----------ccCCCCcEEEecccccccCCCCceeeEE
Q 022194          147 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVL  213 (301)
Q Consensus       147 ~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----------~~~~~~di~~~S~sK~~~g~~g~~~g~~  213 (301)
                      +|+||||.+.+   +++|+++|+++|+++|+||+|+...+..          ....+.++++.|+||++ |++|+|.|++
T Consensus       181 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~riG~~  259 (397)
T 3fsl_A          181 CCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF-SLYGERVGGL  259 (397)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT-TCGGGCCEEE
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccc-cCcCCCeeEE
Confidence            99999999964   6789999999999999999998655431          11345679999999999 6778999999


Q ss_pred             EE--cchhHHHHH-HHhh---hhcCCCCCHHhHHHHHcc----------cccHHHHHHHHHHHHHHHHHHHHhCC
Q 022194          214 AV--KGERLAKEL-YFLQ---NAEGSGLAPFDCWICLRG----------VKTMALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       214 ~~--~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~----------l~~~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      +.  .++.+...+ ....   .......+...+.++...          .+.+.+.++++.++++.+.+.|++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  334 (397)
T 3fsl_A          260 SVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEM  334 (397)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            75  333443322 2211   112222233333333222          22345667788888888999988753

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.91  E-value=1.9e-23  Score=184.70  Aligned_cols=213  Identities=13%  Similarity=0.086  Sum_probs=158.2

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhcc----CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~----~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      ..++++++++++|.+  ++++++||++++. ++..+.    ++||+|+++++.|+++...+. .++..|.+++.++.+  
T Consensus        46 ~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~  124 (384)
T 1eg5_A           46 MEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMK-YLSMKGFKVKYVPVDSR  124 (384)
T ss_dssp             HHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHH-HHHHTTCEEEECCBCTT
T ss_pred             HHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHH-HHHhcCCEEEEEccCCC
Confidence            688999999999876  5666677789986 455555    799999999999998865542 335568899888863  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcC--CEEEEeCCcCCcccc-CccCCCCcEEEeccccc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~--~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~  201 (301)
                         |++++++++++++++|++++|+||||.+.|+++|.++|+++|  +++|+|++|+.+... .....+.|+++.|+||+
T Consensus       125 ~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~  204 (384)
T 1eg5_A          125 GVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKF  204 (384)
T ss_dssp             SCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGG
T ss_pred             CccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHh
Confidence               789999999989999999999999999999999999999999  999999999865432 22334789999999998


Q ss_pred             ccCCCCceeeEEEEcchh-HHHHHHHh---hhhcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          202 IAGHSDVMAGVLAVKGER-LAKELYFL---QNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                      + |++|  .|+++++++. +...+...   ......+.+.....++..+++    .+.+.++++.++++++.+.|++ ++
T Consensus       205 ~-g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g  280 (384)
T 1eg5_A          205 H-GPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LG  280 (384)
T ss_dssp             T-SCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TT
T ss_pred             c-CCCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CC
Confidence            7 6766  4888887653 12111110   011223455555544444433    3456677888888899999987 44


Q ss_pred             c
Q 022194          274 V  274 (301)
Q Consensus       274 v  274 (301)
                      +
T Consensus       281 ~  281 (384)
T 1eg5_A          281 A  281 (384)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.91  E-value=2e-23  Score=184.62  Aligned_cols=210  Identities=12%  Similarity=0.109  Sum_probs=170.5

Q ss_pred             CchHHHHHHHH-HhhcC-CCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           54 NPTRDALESLL-AKLDK-ADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        54 ~~~~~~l~~~l-~~~~~-~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .+..+++++.+ ++++| .+++++++||++|+. ++..+ +++||+|+++++.|.++.    ..+...|.+++.++.+  
T Consensus        35 ~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~----~~~~~~G~~~~~v~~~~~  110 (377)
T 3ju7_A           35 GPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATP----LAAIWCGLEPYFIDISID  110 (377)
T ss_dssp             CHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTT
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHH----HHHHHcCCEEEEEecCCc
Confidence            36689999999 99999 788999999999986 56666 899999999999999986    4455778999888864  


Q ss_pred             ----CHHHHHhhc-CCC--ceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCC---CCcEEEec
Q 022194          128 ----DLDEVASAI-GPW--TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL---GADIVMHS  197 (301)
Q Consensus       128 ----d~~~l~~~l-~~~--~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~---~~di~~~S  197 (301)
                          |++++++++ +++  +++|+   ++|++|...++++|.++|+ +|+++|+|++|+.+........   ..|+.+.|
T Consensus       111 ~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S  186 (377)
T 3ju7_A          111 DWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYS  186 (377)
T ss_dssp             TCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEE
T ss_pred             cCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEE
Confidence                889999988 555  88887   7788999999999999999 9999999999987765433223   26788887


Q ss_pred             c--cccccCCCCceeeEEEEcchhHHHHHHHhhhh------------cCCCCCHHhHHHHHcccccHHHHHHHHHHHHHH
Q 022194          198 A--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNA------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK  263 (301)
Q Consensus       198 ~--sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (301)
                      |  +|++++  | .+|+++.+++.+.+++......            ....+++..++..+..++.+.++.++..+++++
T Consensus       187 ~~~~K~l~~--g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~  263 (377)
T 3ju7_A          187 FHATKPFGI--G-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEW  263 (377)
T ss_dssp             CBTTSSSCC--B-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCC--C-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6  599964  3 4799998888887776655442            234567777888888888888899999999999


Q ss_pred             HHHHHHhCCCc
Q 022194          264 IAEFLASHPRV  274 (301)
Q Consensus       264 l~~~l~~~~~v  274 (301)
                      +.+.|++++.+
T Consensus       264 ~~~~L~~~~~~  274 (377)
T 3ju7_A          264 YKQLLQSNGLM  274 (377)
T ss_dssp             HHHHHHHTTTT
T ss_pred             HHHHhcCCCCc
Confidence            99999987643

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.91  E-value=7.5e-24  Score=188.31  Aligned_cols=211  Identities=15%  Similarity=0.173  Sum_probs=155.2

Q ss_pred             hHHHHHHHHHhhcCCC-c-eE-EecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-----
Q 022194           56 TRDALESLLAKLDKAD-R-AL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----  126 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~-~-~i-~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-----  126 (301)
                      ...++++.++++++.+ + .+ +++||++++. ++..++++||+|++++|.|+++.  +...++..|.+++.++.     
T Consensus        52 ~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~  129 (396)
T 2ch1_A           52 TMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAER--AVEMSERYGADVRTIEGPPDRP  129 (396)
T ss_dssp             HHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEecCCCCCC
Confidence            3788999999999876 3 35 4555679986 56667899999999999999873  22355677888888885     


Q ss_pred             CCHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccC
Q 022194          127 CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       127 ~d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (301)
                      .|++++++++++ ++++|++++|+||||.+.|+++|+++|+++|+++|+|++|+.+... .....+.|+++.|++|++++
T Consensus       130 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~  209 (396)
T 2ch1_A          130 FSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGA  209 (396)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCC
T ss_pred             CCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccC
Confidence            378999999886 7999999999999999999999999999999999999999866543 22344679999999999888


Q ss_pred             CCCceeeEEEEcchhHHHHHHHh-----------------h------hhcCCCCCHHhHHHHHcccc-----cHHHHHHH
Q 022194          205 HSDVMAGVLAVKGERLAKELYFL-----------------Q------NAEGSGLAPFDCWICLRGVK-----TMALRVEK  256 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~-----------------~------~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~  256 (301)
                      ++|+  |+++.++ .+.+.+...                 .      .....+.+.....++..+++     .+.+.+++
T Consensus       210 ~~g~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  286 (396)
T 2ch1_A          210 PPGI--TPISISP-KALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKR  286 (396)
T ss_dssp             CSSC--EEEEECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CCCe--EEEEECH-HHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            7775  7888875 444433211                 0      01112334444443333333     24556677


Q ss_pred             HHHHHHHHHHHHHhC
Q 022194          257 QQDNAQKIAEFLASH  271 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~  271 (301)
                      ..++++++.+.|+++
T Consensus       287 ~~~~~~~l~~~L~~~  301 (396)
T 2ch1_A          287 RIECAQILYEGLGKM  301 (396)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC
Confidence            888888888888765

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=2.7e-24  Score=190.77  Aligned_cols=211  Identities=15%  Similarity=0.054  Sum_probs=156.0

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhccCC-------------CCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGT-------------GEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~~~-------------g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      +++++++++++++.+  +++++++|++|+. ++..+..+             ||+|++++|.|+++.    ..++..|.+
T Consensus        71 ~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~  146 (397)
T 3f9t_A           71 EEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFE----KGREMMDLE  146 (397)
T ss_dssp             HHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHH----HHHHHHTCE
T ss_pred             HHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHH----HHHHHcCce
Confidence            678999999999876  4477777888885 55555554             999999999999987    444556889


Q ss_pred             EEEecCC-----CHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc----------
Q 022194          121 VKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----------  184 (301)
Q Consensus       121 ~~~~~~~-----d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~----------  184 (301)
                      ++.++.+     |++++++++++ ++++|++++|+||||.+.|+++|+++|++||+++|+|++|+.+...          
T Consensus       147 ~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~  226 (397)
T 3f9t_A          147 YIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKG  226 (397)
T ss_dssp             EEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTT
T ss_pred             eEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccccccccc
Confidence            9999876     89999999987 8999999999999999999999999999999999999999854331          


Q ss_pred             -----CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhc---------C--CCCCHHhHHHHHccc-
Q 022194          185 -----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE---------G--SGLAPFDCWICLRGV-  247 (301)
Q Consensus       185 -----~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~~l-  247 (301)
                           .... ++|+++.|+||+++++.  +.|+++.+++.+.+.+.......         +  ...+....++++..+ 
T Consensus       227 ~~~~~~~~~-~~~~~~~s~~K~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  303 (397)
T 3f9t_A          227 VNYKFDFSL-GVDSITIDPHKMGHCPI--PSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG  303 (397)
T ss_dssp             CCCCCSGGG-TCSEEECCTTTTTCCCS--SCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH
T ss_pred             ccccccccc-cCCeEEEccccccCCCC--CceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHh
Confidence                 1122 78999999999985543  46888887766544322111110         1  111223333443333 


Q ss_pred             -ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          248 -KTMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       248 -~~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                       ..+.+..++..++++++.+.|+++ ++.
T Consensus       304 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  331 (397)
T 3f9t_A          304 REGQRKIVNECMENTLYLYKKLKEN-NFK  331 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence             234567778888889999999887 443

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.91  E-value=3.7e-24  Score=190.24  Aligned_cols=252  Identities=14%  Similarity=0.132  Sum_probs=170.5

Q ss_pred             ceeeecCCCCC--CCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHH
Q 022194           11 TLLMNFSNEFD--PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVT   87 (301)
Q Consensus        11 ~~~~~~~~~~~--~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~   87 (301)
                      ..++||+++..  .+|. ++|.+........+   ...+.+..+..+.++++++++++++|.+++++++||++|+. ++.
T Consensus        36 ~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~---~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~  111 (392)
T 3ruy_A           36 NRYMDLLSAYSAVNQGH-RHPKIINALIDQAN---RVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIK  111 (392)
T ss_dssp             CEEEESSHHHHTCTTCB-TCHHHHHHHHHHHT---TCSCCCTTSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHH
T ss_pred             CEEEEcCCChhhhccCC-CCHHHHHHHHHHHH---hccccccccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHH
Confidence            46888873211  2555 34544443222211   11111122234569999999999999888889999999986 444


Q ss_pred             hccC----------CCCeEEEcCCCCccHHHHHhhhccc---------CCcEEEEecCCCHHHHHhhcCCCceEEEEeCC
Q 022194           88 HLLG----------TGEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIGPWTKLVWVESP  148 (301)
Q Consensus        88 ~~~~----------~g~~Vlv~~~~y~~~~~~~~~~~~~---------~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~  148 (301)
                      .+..          .+|+|++..+.|++...........         ....+..++.+|++++++++++++++|+++++
T Consensus       112 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~  191 (392)
T 3ruy_A          112 TARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPNTAAFILEPI  191 (392)
T ss_dssp             HHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHCCTTEEEEEECSS
T ss_pred             HHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHHHhccCeEEEEEeCc
Confidence            3332          2679999999998775433222111         11236667777999999999999999999999


Q ss_pred             CCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccC--CCCcEEEecccccccCCCC-ceeeEEEEcc
Q 022194          149 TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLE--LGADIVMHSATKFIAGHSD-VMAGVLAVKG  217 (301)
Q Consensus       149 ~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~--~~~di~~~S~sK~~~g~~g-~~~g~~~~~~  217 (301)
                      +||||.+.|    +++|+++|++||+++|+||+|+.. ...   ....  ...|++  ++||+++|  | +++|++++++
T Consensus       192 ~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--~~SK~l~g--G~~~~G~~~~~~  267 (392)
T 3ruy_A          192 QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMY--ILGKALGG--GVFPISCAAANR  267 (392)
T ss_dssp             BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT--TTSCCEEEEECH
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEE--EEchhhhC--ChhhhEEEEECH
Confidence            999999998    999999999999999999999632 111   1111  234554  67899854  5 6789999875


Q ss_pred             hhHHHHHHHhhhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHhC
Q 022194          218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~  271 (301)
                       .+.+.+.......+.+.++..++++...++.+  .+..+++.++++++.+.|+++
T Consensus       268 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  322 (392)
T 3ruy_A          268 -DILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEI  322 (392)
T ss_dssp             -HHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTC
T ss_pred             -HHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence             44444433344445667777777777766654  345677788888899998876

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.91  E-value=5.3e-24  Score=186.83  Aligned_cols=252  Identities=14%  Similarity=0.060  Sum_probs=166.8

Q ss_pred             cCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCC-chHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCC
Q 022194           16 FSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTG   93 (301)
Q Consensus        16 ~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g   93 (301)
                      |. +|||+|...+|..........+... .......++. +...+++++++++++.+..+++++|++++. ++..++.+|
T Consensus         9 ~~-~~~~l~~~~~p~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~~g   86 (357)
T 3lws_A            9 FQ-QTTGQISGHGKRNVGVLKTAFAAVA-DEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDET   86 (357)
T ss_dssp             HH-TCSEESSBSSCCBHHHHHHHHTTSC-TTCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             HH-hhcccccCCCCCCHHHHHHHHHHhh-cccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhhcC
Confidence            55 8999999999988754322111100 0111112233 558999999999999998899999998875 666677888


Q ss_pred             C--eEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----CHHHHHhhcCCCceEEEEeCCCCCc-ccccc---HHHHHH
Q 022194           94 E--EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPR-QQICD---IRKIAE  163 (301)
Q Consensus        94 ~--~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~v~i~~~~np~-G~~~~---l~~l~~  163 (301)
                      |  .|+++++.|...... .......|++++.++.+    |+++++++.  ++++|++++|+||+ |.+.+   +++|++
T Consensus        87 d~~~vi~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~  163 (357)
T 3lws_A           87 DNRTVAYHPLCHLEIHEQ-DGLKELHPIETILVGAADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISR  163 (357)
T ss_dssp             TCCEEEECTTCHHHHSST-THHHHHSSCEEEECSCTTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHH
T ss_pred             CCcEEEecccceeeeecc-chhhhccCcEEEEecCCCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHH
Confidence            8  566665554433210 01223448888888754    789998874  38999999999998 88774   899999


Q ss_pred             HHHHcCCEEEEeCCcCC---ccccC---ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCC--C
Q 022194          164 MAHAHGALLLVDNSIMS---PVLSR---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--L  235 (301)
Q Consensus       164 l~~~~~~~li~D~~~~~---~~~~~---~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~--~  235 (301)
                      +|++||+++|+|++|..   .....   ....+.|+++.|+||++++|.|   |+++.+ +.+.+.+.......+..  .
T Consensus       164 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g---g~~~~~-~~~~~~~~~~~~~~~~~~~~  239 (357)
T 3lws_A          164 YCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAG---AILAGP-AAFCQTARIWKRRYGGDLIS  239 (357)
T ss_dssp             HHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSC---EEEEEC-HHHHHHHHHHHHHTTCCCSC
T ss_pred             HHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCce---EEEEcC-HHHHHHHHHHHHHhcCCccc
Confidence            99999999999999861   11111   1123578889999999977654   787775 45666555444333322  1


Q ss_pred             CHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcce
Q 022194          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKK  276 (301)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~  276 (301)
                      ....+.+...+++...++.++..++++++.+.|++++++..
T Consensus       240 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  280 (357)
T 3lws_A          240 LYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHT  280 (357)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence            22222333333443334445567788889999998877653

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.91  E-value=1.1e-23  Score=190.56  Aligned_cols=252  Identities=14%  Similarity=0.118  Sum_probs=163.8

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCC-C-CCCCCccccCCCCchHHHHHHHHHhhc----CCC--ceEEecchHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPS-A-TENGPYDYTRSGNPTRDALESLLAKLD----KAD--RALCFTSGMAA   82 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~-~-~~~~~~~y~~~g~~~~~~l~~~l~~~~----~~~--~~i~~~sG~~a   82 (301)
                      ..+++|++ + +.+...+|.+......... . .......|.+.  +...++++.+++++    +.+  +++++++++++
T Consensus        69 ~~~i~l~~-g-~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~--~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~a  144 (449)
T 3qgu_A           69 AKIISLGI-G-DTTEPLPKYIADAMAKAAAGLATREGYSGYGAE--QGQGALREAVASTFYGHAGRAADEIFISDGSKCD  144 (449)
T ss_dssp             CCCEECSS-C-CCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTT--TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHH
T ss_pred             CCEEEeeC-C-CCCCCCCHHHHHHHHHHHHhhccccCCCCCCCC--CCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHH
Confidence            46889984 3 3444355544433211111 0 00123345432  11445555555554    332  44445555688


Q ss_pred             HHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcE----------EEEecCCCHHHHHhhcC--CCceEEEEeCCCC
Q 022194           83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV----------VKRVNTCDLDEVASAIG--PWTKLVWVESPTN  150 (301)
Q Consensus        83 i~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~----------~~~~~~~d~~~l~~~l~--~~~~~v~i~~~~n  150 (301)
                      +.++..++++||+|++++|.|+++...+    +..|.+          ++.++.++.+.+...+.  +++++|++++|+|
T Consensus       145 l~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~N  220 (449)
T 3qgu_A          145 IARIQMMFGSKPTVAVQDPSYPVYVDTS----VMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNN  220 (449)
T ss_dssp             HHHHHHHHCSSSCEEEEESCCTHHHHHH----HHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCT
T ss_pred             HHHHHHHhCCCCEEEEcCCCChhHHHHH----HHcCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEeCCCC
Confidence            8766888999999999999999997443    344555          66776653322221111  5789999999999


Q ss_pred             Ccccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-----cc----CCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          151 PRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       151 p~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      |||.+.+   +++|+++|+++|+++|+||+|+...+..     ..    ..+.++++.|+||++ |.+|++.|+++++++
T Consensus       221 PtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~  299 (449)
T 3qgu_A          221 PTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYA-GFTGVRLGWTVVPKA  299 (449)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGG-TCTTCCCEEEECCTT
T ss_pred             CCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhc-CCccceeEEEecCHH
Confidence            9999975   8889999999999999999998644321     11    134679999999999 667889999999865


Q ss_pred             hHH-------HHHHHhhhhcCCCCCHHhHHHHHccccc-----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          219 RLA-------KELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       219 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+.       ..+.........+.++..+.++...++.     +.+.++++.++++++.+.|+++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  364 (449)
T 3qgu_A          300 LKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM  364 (449)
T ss_dssp             CBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            432       1333333444445666666666555543     4566778888899999999876

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.91  E-value=3.8e-23  Score=187.01  Aligned_cols=255  Identities=14%  Similarity=0.053  Sum_probs=166.3

Q ss_pred             eeeecCCCCCCCCcccc-CeeecceeecCCC---CCCCCccccCC-CCch-HHHHHHHHHhhcCC-------CceEE--e
Q 022194           12 LLMNFSNEFDPYGALST-PLYQTATFKQPSA---TENGPYDYTRS-GNPT-RDALESLLAKLDKA-------DRALC--F   76 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~-p~~~~~~~~~~~~---~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~-------~~~i~--~   76 (301)
                      ..++|+ ...|+....+ ++..+..-.....   .......|.+. |.+. ++++.+++   +|.       +++++  +
T Consensus        50 ~~i~l~-~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l---~g~~~~~~~~~~i~~~~t  125 (448)
T 3meb_A           50 KKVNLG-VGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM---FGKDSKAAQEGRIASCQS  125 (448)
T ss_dssp             TCEEES-SCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---HCTTCHHHHTTCEEEEEE
T ss_pred             CeEEee-cccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---cCCCccccCcCcEEEEEC
Confidence            468888 6677443333 4333221110001   11234455543 5443 44444444   243       34555  6


Q ss_pred             cchHHHHHH---HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC---C-----CHHHHHhhcC---CCceE
Q 022194           77 TSGMAALAA---VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C-----DLDEVASAIG---PWTKL  142 (301)
Q Consensus        77 ~sG~~ai~~---~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~---~-----d~~~l~~~l~---~~~~~  142 (301)
                      ++|++|+..   +.+++.+||+|++++|.|..+...+...++..|.+++.++.   +     |++++++.++   +++++
T Consensus       126 ~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~  205 (448)
T 3meb_A          126 LSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIF  205 (448)
T ss_dssp             SHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEE
Confidence            677888843   45678899999999999999974443222267877777765   2     7899998887   45788


Q ss_pred             EEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccCc-----------cCCCCcEEEecccccccCCCCc
Q 022194          143 VWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP-----------LELGADIVMHSATKFIAGHSDV  208 (301)
Q Consensus       143 v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~~-----------~~~~~di~~~S~sK~~~g~~g~  208 (301)
                      +++++|+||||.+.+   +++|+++|+++|+++|+||+|....+...           .....++++.|+||.| |++|+
T Consensus       206 v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~  284 (448)
T 3meb_A          206 LFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNF-GLYGE  284 (448)
T ss_dssp             EEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGG
T ss_pred             EEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccC-CCccc
Confidence            889999999999976   66699999999999999999886544320           1223568899999999 66788


Q ss_pred             eeeEE--EE--------cch----hHHHHHHHhhhhcCCCCCHHhHHHHHcccc----------cHHHHHHHHHHHHHHH
Q 022194          209 MAGVL--AV--------KGE----RLAKELYFLQNAEGSGLAPFDCWICLRGVK----------TMALRVEKQQDNAQKI  264 (301)
Q Consensus       209 ~~g~~--~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~l  264 (301)
                      |.|++  ++        +++    .+.+.+...........+...+.++...+.          .+.+.++++.++++.+
T Consensus       285 RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l  364 (448)
T 3meb_A          285 RIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLL  364 (448)
T ss_dssp             CCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998  66        544    444444443333334455555555444433          2455667788888889


Q ss_pred             HHHHHhC
Q 022194          265 AEFLASH  271 (301)
Q Consensus       265 ~~~l~~~  271 (301)
                      .+.|+++
T Consensus       365 ~~~L~~~  371 (448)
T 3meb_A          365 HASLAKR  371 (448)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9988876

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.91  E-value=3.2e-23  Score=184.04  Aligned_cols=212  Identities=14%  Similarity=0.179  Sum_probs=157.2

Q ss_pred             chHHHHHHHHHhhcCCCc--eE-EecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC----
Q 022194           55 PTRDALESLLAKLDKADR--AL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----  126 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~--~i-~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~----  126 (301)
                      +..+++++++++++|.+.  .+ +++||++|+. ++..++++||+|++++|.|+++.  +...++..|.+++.++.    
T Consensus        52 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  129 (393)
T 2huf_A           52 KIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR--SADMATRYGADVRVVKSKVGQ  129 (393)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEEeCCCCC
Confidence            347899999999999763  45 5566689986 56667899999999999998852  22445667888888885    


Q ss_pred             -CCHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccccc
Q 022194          127 -CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (301)
Q Consensus       127 -~d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (301)
                       .|++++++++++ ++++|++++|+||||.+.|+++|+++|+++|+++|+|++++.+... .....++|+++.|+||+++
T Consensus       130 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~  209 (393)
T 2huf_A          130 SLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLG  209 (393)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTC
T ss_pred             CCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccc
Confidence             378999999987 8999999999999999999999999999999999999999876543 2334578999999999987


Q ss_pred             CCCCceeeEEEEcchhHHHHHHHhh----h-h---------cC---------CCCCHHhHHHHHccccc-----HHHHHH
Q 022194          204 GHSDVMAGVLAVKGERLAKELYFLQ----N-A---------EG---------SGLAPFDCWICLRGVKT-----MALRVE  255 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~~~~----~-~---------~~---------~~~~~~~~~~~~~~l~~-----~~~~~~  255 (301)
                      |++|+  |++++++ .+.+.+....    . .         .+         .+.+.....++..+++.     +.+..+
T Consensus       210 g~~G~--G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  286 (393)
T 2huf_A          210 APPGI--TPVSFSH-RAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIA  286 (393)
T ss_dssp             CCSSC--EEEEECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cCCCe--EEEEECH-HHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            88876  8888874 4555544320    0 0         00         12333333333323332     455667


Q ss_pred             HHHHHHHHHHHHHHhC
Q 022194          256 KQQDNAQKIAEFLASH  271 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~  271 (301)
                      +..++++++.+.|+++
T Consensus       287 ~~~~~~~~l~~~L~~~  302 (393)
T 2huf_A          287 RHEDCAKRLYRGLQDA  302 (393)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            7888888899998875

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.91  E-value=1.1e-23  Score=186.16  Aligned_cols=216  Identities=15%  Similarity=0.110  Sum_probs=157.1

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhcc----CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC
Q 022194           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~----~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~  127 (301)
                      +..+++++++++++|.+  ++++++||++|+. ++..+.    ++||+|+++++.|+++...+. .++..|.+++.++.+
T Consensus        43 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~  121 (382)
T 4eb5_A           43 EAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIPVG  121 (382)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHTTTTCEEEEECBC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHH-HHHhCCcEEEEeccC
Confidence            34789999999999986  4556667789986 555555    799999999999998875553 344578899988863


Q ss_pred             -----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccc
Q 022194          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (301)
Q Consensus       128 -----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~  201 (301)
                           |++++++++++++++|++++++||||.+.|+++|+++|+++|++ |+|++|+.+... .....+.|+++.|+||+
T Consensus       122 ~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~  200 (382)
T 4eb5_A          122 KYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDI  200 (382)
T ss_dssp             TTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGG
T ss_pred             CCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHh
Confidence                 79999999988899999999999999999999999999999999 999999866443 22223689999999998


Q ss_pred             ccCCCCceeeEEEEcchh-HHHHHHH---hhhhcCCCCCHHhHHHHHccccc----HHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          202 IAGHSDVMAGVLAVKGER-LAKELYF---LQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                      + |++|  .|+++++++. +......   .......+.+.....++..+++.    +.+.++++.++++++.+.|+++++
T Consensus       201 ~-g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  277 (382)
T 4eb5_A          201 Y-GPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEE  277 (382)
T ss_dssp             T-CCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             c-CCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            6 6766  3777777653 2111000   01112233344433333333332    455667788888889999988766


Q ss_pred             cc
Q 022194          274 VK  275 (301)
Q Consensus       274 v~  275 (301)
                      +.
T Consensus       278 ~~  279 (382)
T 4eb5_A          278 SY  279 (382)
T ss_dssp             EE
T ss_pred             eE
Confidence            53

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.91  E-value=8.8e-24  Score=188.53  Aligned_cols=250  Identities=17%  Similarity=0.146  Sum_probs=172.7

Q ss_pred             ceeeecCCCC---CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHH-H
Q 022194           11 TLLMNFSNEF---DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-V   86 (301)
Q Consensus        11 ~~~~~~~~~~---~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~-~   86 (301)
                      ..++||. ++   +++|. ++|.+.........   ...+.+..+..+...+++++++++++.+++++++||++|+.+ +
T Consensus        39 ~~~lD~~-~~~~~~~lg~-~~p~v~~a~~~~~~---~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al  113 (406)
T 4adb_A           39 KEYIDFA-GGIAVNALGH-AHPELREALNEQAS---KFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAAL  113 (406)
T ss_dssp             CEEEESS-HHHHTCTTCB-TCHHHHHHHHHHHT---TCSCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHH
T ss_pred             CEEEECC-CchhhcccCC-CCHHHHHHHHHHHH---hcccccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHH
Confidence            3689998 55   88998 45555543322211   111111223456689999999999999988889999999864 4


Q ss_pred             HhccC-------CC-CeEEEcCCCCccHHHHHhhhc---------ccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCC
Q 022194           87 THLLG-------TG-EEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPT  149 (301)
Q Consensus        87 ~~~~~-------~g-~~Vlv~~~~y~~~~~~~~~~~---------~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~  149 (301)
                      ..+..       +| |+|++.+|.|+++........         ...+..+..++..|++++++++++++++|+++ |+
T Consensus       114 ~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p~  192 (406)
T 4adb_A          114 KLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVE-PI  192 (406)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTCSTTEEEEEEC-SE
T ss_pred             HHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHhcCCeEEEEEe-CC
Confidence            44433       55 999999999998853322211         22235677788789999999999899999999 99


Q ss_pred             CCccccc-----cHHHHHHHHHHcCCEEEEeCCcCCccc-cCc-----cCCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          150 NPRQQIC-----DIRKIAEMAHAHGALLLVDNSIMSPVL-SRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       150 np~G~~~-----~l~~l~~l~~~~~~~li~D~~~~~~~~-~~~-----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      ||+|.+.     ++++|+++|++||+++|+||+|+.... ...     .....|++  |+||+++  +|++.|++++++ 
T Consensus       193 np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~--~G~r~G~~~~~~-  267 (406)
T 4adb_A          193 QGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG--GGFPVGALLATE-  267 (406)
T ss_dssp             ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG--TTSCCEEEEECH-
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc--CCCCeEEEEEcH-
Confidence            9999764     599999999999999999999973211 111     12234555  6899995  468899998874 


Q ss_pred             hHHHHHHHhhhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHhC
Q 022194          219 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+.+.+.......+.+.++..+.++...++.+  .+..+++.++++++.+.|++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~  322 (406)
T 4adb_A          268 ECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTI  322 (406)
T ss_dssp             HHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            45454433333444566777777766665543  556677777778888877653

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.91  E-value=6.8e-24  Score=185.66  Aligned_cols=244  Identities=16%  Similarity=0.167  Sum_probs=167.7

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~~~~~   88 (301)
                      ..+++|++..++++  .+|.+......  ..  .....|.   .+...+++++++++++.+  +++++++|++++.++..
T Consensus        15 ~~~id~~~~~~~~~--~~~~v~~a~~~--~~--~~~~~y~---~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~   85 (350)
T 3fkd_A           15 SEIVNFSTTVWTDG--DKDHLEKHLVE--NL--NCIRHYP---EPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQ   85 (350)
T ss_dssp             -CCEECSCCSCCCS--CCHHHHHHHHH--TG--GGGGSCC---CTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHH
T ss_pred             ccEEEccCCCCCCC--CCHHHHHHHHH--hH--hHHhcCC---CCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence            57899995556666  44544433211  11  1122232   333368999999999875  45555555799975555


Q ss_pred             ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-CCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH
Q 022194           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA  167 (301)
Q Consensus        89 ~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~  167 (301)
                      .+. ||+|+++.|.|+++.    ..++..|.+++.++. ++.+.+..   +++++|++++|+||||.+.++++|.++++.
T Consensus        86 ~l~-gd~Vi~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~  157 (350)
T 3fkd_A           86 AFR-GSRSLIAIPSFAEYE----DACRMYEHEVCFYPSNEDIGEADF---SNMDFCWLCNPNNPDGRLLQRTEILRLLND  157 (350)
T ss_dssp             HTT-TCEEEEEESCCHHHH----HHHHHTTCEEEEEETTSCGGGSCC---TTCSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred             HHC-CCEEEEeCCCcHHHH----HHHHHcCCeEEEEecCCccccCcc---CCCCEEEEeCCCCCcCCCCCHHHHHHHHHh
Confidence            444 999999999999886    555678999999997 54343322   688999999999999999999999999988


Q ss_pred             cC-CEEEEeCCcCCccccC------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhH
Q 022194          168 HG-ALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC  240 (301)
Q Consensus       168 ~~-~~li~D~~~~~~~~~~------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (301)
                      ++ .++|+||+|+......      ....+.++++.|+||++ |++|++.|+++++ +.+.+.+.....  .++.++..+
T Consensus       158 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~-~~~~~~~~~~~~--~~~~~~~~~  233 (350)
T 3fkd_A          158 HPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAY-GIPGLRIGYIVAN-KDFMKRVAAFST--PWAVNALAI  233 (350)
T ss_dssp             CTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHH-SCGGGCCEEEECC-HHHHHHHHTTCC--TTCSCHHHH
T ss_pred             CCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhc-cCcchheEeEEeC-HHHHHHHHHhCC--CCCCCHHHH
Confidence            76 7999999997544321      11345679999999999 5567899999984 566665554433  345566665


Q ss_pred             HHHHccccc---HHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          241 WICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       241 ~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      .++...++.   +.++.++..++++++.+.|++++++.
T Consensus       234 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  271 (350)
T 3fkd_A          234 EAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVE  271 (350)
T ss_dssp             HHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEE
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence            555444332   22333444588888999998887654

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.91  E-value=5.5e-23  Score=183.85  Aligned_cols=220  Identities=15%  Similarity=0.155  Sum_probs=150.0

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcC----CCceEE--ecchHHHHHHH---HhccCCCCeEEEcCCCCccHHHHHhhhccc
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDK----ADRALC--FTSGMAALAAV---THLLGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~----~~~~i~--~~sG~~ai~~~---~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~  116 (301)
                      .|.+. |.+. ++++.+++.+.++    .+++++  +++|++++.++   .+.+.+||+|++++|.|+++.    ..++.
T Consensus        68 ~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~----~~~~~  143 (412)
T 1yaa_A           68 EYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHM----AIFEN  143 (412)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHH----HHHHT
T ss_pred             CCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHH----HHHHH
Confidence            45443 4443 6666666654433    345666  66678888644   455679999999999999987    44456


Q ss_pred             CCcEEEEecC-C------CHHHHHhhcCCC---ceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccc
Q 022194          117 TGVVVKRVNT-C------DLDEVASAIGPW---TKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (301)
Q Consensus       117 ~g~~~~~~~~-~------d~~~l~~~l~~~---~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~  183 (301)
                      .|.+++.++. +      |++++++++++.   +.++++++|+||||.+.+   +++|+++|+++|+++|+||+|....+
T Consensus       144 ~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  223 (412)
T 1yaa_A          144 QGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFAT  223 (412)
T ss_dssp             TTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSS
T ss_pred             cCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccC
Confidence            7888888776 2      789999888642   445555999999999975   67899999999999999999965433


Q ss_pred             cC------cc-----CCC---CcEEEecccccccCCCCceeeEEE--E----cchh----HHHHHHHhhhhcCCCCCHHh
Q 022194          184 SR------PL-----ELG---ADIVMHSATKFIAGHSDVMAGVLA--V----KGER----LAKELYFLQNAEGSGLAPFD  239 (301)
Q Consensus       184 ~~------~~-----~~~---~di~~~S~sK~~~g~~g~~~g~~~--~----~~~~----~~~~~~~~~~~~~~~~~~~~  239 (301)
                      ..      +.     ...   .++++.|+||++ |++|+|.|+++  +    +++.    +.+.+.........+.+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  302 (412)
T 1yaa_A          224 GDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA-GMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYG  302 (412)
T ss_dssp             SCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-CCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred             CcccchhHHHHHHHhcCCCCcceEEEeccCCCC-CCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHH
Confidence            21      11     122   578999999999 67789999998  6    2344    55544443333233445555


Q ss_pred             HHHHHcccc----------cHHHHHHHHHHHHHHHHHHHHhCC
Q 022194          240 CWICLRGVK----------TMALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       240 ~~~~~~~l~----------~~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      +.++...++          .+.+.++++.++++.+.+.|+++.
T Consensus       303 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1yaa_A          303 AKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG  345 (412)
T ss_dssp             HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            555444433          344556677778888888887754

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.91  E-value=1.2e-23  Score=185.58  Aligned_cols=216  Identities=15%  Similarity=0.111  Sum_probs=158.4

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhcc----CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC
Q 022194           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~----~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~  127 (301)
                      +..++++++++++++.+  +++++++|++++. ++..+.    ++||+|+++++.|+++...+. .++..|++++.++.+
T Consensus        43 ~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~  121 (382)
T 4hvk_A           43 EAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIPVG  121 (382)
T ss_dssp             HHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHHHTTCEEEEECBC
T ss_pred             HHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHH-HHHhcCCEEEEeccC
Confidence            34779999999999986  3555666678886 555565    899999999999999876553 335678999998875


Q ss_pred             -----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-ccCCCCcEEEeccccc
Q 022194          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF  201 (301)
Q Consensus       128 -----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~S~sK~  201 (301)
                           |++++++++++++++|++++++||||.+.|+++|+++|+++|+ +|+|++|+.+.... ....++|+++.|+||+
T Consensus       122 ~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~  200 (382)
T 4hvk_A          122 KYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDI  200 (382)
T ss_dssp             TTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGG
T ss_pred             CCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHh
Confidence                 8999999999999999999999999999999999999999999 99999998776542 2334789999999997


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHH----hhhhcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYF----LQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                      + |+.|  .|+++.+++........    .......+.+......+..+++    .+.+..++..++++++.+.|+++++
T Consensus       201 ~-g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  277 (382)
T 4hvk_A          201 Y-GPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEE  277 (382)
T ss_dssp             T-SCTT--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             c-CCCc--eEEEEEcCccCcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            6 6666  47776665431110000    0111123334444444433333    3456667788888889999988776


Q ss_pred             cc
Q 022194          274 VK  275 (301)
Q Consensus       274 v~  275 (301)
                      +.
T Consensus       278 ~~  279 (382)
T 4hvk_A          278 SY  279 (382)
T ss_dssp             EE
T ss_pred             eE
Confidence            54

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.91  E-value=7e-23  Score=179.03  Aligned_cols=208  Identities=13%  Similarity=0.064  Sum_probs=152.8

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      ...++++++++++|.+  ++++++||++++. ++..++++||+|+++++.|+++.  +...++..|.+++.++.+     
T Consensus        35 ~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~  112 (352)
T 1iug_A           35 VFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTP  112 (352)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCC
T ss_pred             HHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCC
Confidence            3688999999999986  4555667789986 66667899999999999999875  234556678888888864     


Q ss_pred             CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCcccc-CccCCCCcEEEecccccccC
Q 022194          128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       128 d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~--~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (301)
                      |++++++   +++++|++++++||||.+.|+++|.++|+++  |+++|+|++|+.+... .....+.|++++|+||++++
T Consensus       113 d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~  189 (352)
T 1iug_A          113 RPEDVAK---EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMC  189 (352)
T ss_dssp             CTTTSCC---SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCC
T ss_pred             CHHHHhc---cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccC
Confidence            5666665   5789999999999999999999999999999  9999999999866543 22334789999999998777


Q ss_pred             CCCceeeEEEEcchhHHHH---------HH----Hh-hhhcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHH
Q 022194          205 HSDVMAGVLAVKGERLAKE---------LY----FL-QNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAE  266 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~---------~~----~~-~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~  266 (301)
                      +.|  .|+++++++.+ +.         +.    .. ......+.+.....++..+++    .+.+.++++.++++++.+
T Consensus       190 ~~g--~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~  266 (352)
T 1iug_A          190 PPG--LGFVALSPRAL-ERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYG  266 (352)
T ss_dssp             CSC--EEEEEECHHHH-HTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCc--eeEEEECHHHH-HHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766  48888875543 22         11    11 112223444444333333322    256677888888899999


Q ss_pred             HHHhC
Q 022194          267 FLASH  271 (301)
Q Consensus       267 ~l~~~  271 (301)
                      .|+++
T Consensus       267 ~L~~~  271 (352)
T 1iug_A          267 VGEEG  271 (352)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            99876

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.91  E-value=2.1e-23  Score=184.93  Aligned_cols=211  Identities=14%  Similarity=0.190  Sum_probs=158.1

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           56 TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~---~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ...+++++++++++.+   ++++++||++++. ++..++++||+|+++.+.|++..  +...++..|.+++.++.+    
T Consensus        57 ~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~  134 (393)
T 3kgw_A           57 IMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPGEH  134 (393)
T ss_dssp             HHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCC
Confidence            4788999999999876   2455677788885 66778999999999988875431  235566778888888753    


Q ss_pred             -CHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccC
Q 022194          128 -DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       128 -d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (301)
                       |++++++++++ ++++|++++|+||||.+.|+++|.++|++||+++|+|++++.+... .....+.|+++.|+||+++|
T Consensus       135 ~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~  214 (393)
T 3kgw_A          135 YTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNA  214 (393)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCC
T ss_pred             CCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccC
Confidence             89999999987 8999999999999999999999999999999999999999866543 33455789999999998877


Q ss_pred             CCCceeeEEEEcchhHHHHHHHhhh-----------------------hcCCCCCHHhHHHHHccccc-----HHHHHHH
Q 022194          205 HSDVMAGVLAVKGERLAKELYFLQN-----------------------AEGSGLAPFDCWICLRGVKT-----MALRVEK  256 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~-----~~~~~~~  256 (301)
                      +.|  .|+++++++ +.+.+.....                       ....+.+.....++..+++.     +.+..++
T Consensus       215 ~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  291 (393)
T 3kgw_A          215 PPG--ISLISFNDK-AKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRR  291 (393)
T ss_dssp             CSS--CEEEEECHH-HHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CCc--eeEEEECHH-HHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            776  588888754 4444432111                       01123344444444344332     4666778


Q ss_pred             HHHHHHHHHHHHHhC
Q 022194          257 QQDNAQKIAEFLASH  271 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~  271 (301)
                      ..++++++.+.|+++
T Consensus       292 ~~~~~~~l~~~L~~~  306 (393)
T 3kgw_A          292 HREATAHLHKHLQEM  306 (393)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHc
Confidence            888888999999876

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.91  E-value=7.3e-23  Score=182.98  Aligned_cols=212  Identities=14%  Similarity=0.137  Sum_probs=159.4

Q ss_pred             chHHHHHHHHHhhcCCCc--eE-EecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---
Q 022194           55 PTRDALESLLAKLDKADR--AL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~--~i-~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---  127 (301)
                      +..++++++++++++.+.  .+ +++||++++. ++..++++||+|+++++.|++..  +...++..|.+++.++.+   
T Consensus        44 ~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  121 (416)
T 3isl_A           44 GIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWGT  121 (416)
T ss_dssp             HHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCCC
Confidence            348899999999999863  33 4566778885 66678999999999999998732  235667788999998876   


Q ss_pred             --CHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccccc
Q 022194          128 --DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 --d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (301)
                        |+++++++++ +++++|++++++||||.+.|+++|+++|+++|+++|+|++|+.+... .....++|+++.|+||+++
T Consensus       122 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~  201 (416)
T 3isl_A          122 VFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLS  201 (416)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTC
T ss_pred             CCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccC
Confidence              8999999998 58999999999999999999999999999999999999999877654 3445678999999999877


Q ss_pred             CCCCceeeEEEEcchhHHHHHHHhh-------------------------------------h-hcCCCCCHHhHHHHHc
Q 022194          204 GHSDVMAGVLAVKGERLAKELYFLQ-------------------------------------N-AEGSGLAPFDCWICLR  245 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~~~~-------------------------------------~-~~~~~~~~~~~~~~~~  245 (301)
                      |+.|  .|+++.+++ +.+.+....                                     . ....+.+.....++..
T Consensus       202 g~~g--~g~~~~~~~-~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  278 (416)
T 3isl_A          202 VPSG--MAPITYNER-VADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALRE  278 (416)
T ss_dssp             CCSS--EEEEEECHH-HHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHH
T ss_pred             CCCC--eEEEEECHH-HHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHH
Confidence            7766  588887754 444433210                                     0 0112334444433333


Q ss_pred             cccc-----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          246 GVKT-----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       246 ~l~~-----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +++.     +.+..++..++++++.+.|++.
T Consensus       279 al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  309 (416)
T 3isl_A          279 GVRLVLEEGLETRFERHRHHEAALAAGIKAM  309 (416)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            3332     4566777888888898888874

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.91  E-value=1.7e-22  Score=179.41  Aligned_cols=211  Identities=20%  Similarity=0.255  Sum_probs=163.8

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+...++++.++++++.++.+++++|++|+. ++..+ +++||+|+++++.|+++..    .+...|.+++.++.+    
T Consensus        55 ~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~  130 (391)
T 3dr4_A           55 GRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASAN----SVTYCGATPVLVDNDPRTF  130 (391)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHH----HHHHTTCEEEEECBCTTTC
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHH----HHHHCCCEEEEEecCcccc
Confidence            3558999999999999999999999999985 56666 7899999999999999874    445678888888865    


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCC--CcEEEeccc--cc
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KF  201 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~--~di~~~S~s--K~  201 (301)
                        |++++++++++++++|+   ++||||...++++|+++|+++|+++|+|++|+.+........+  .|+++.||+  |+
T Consensus       131 ~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~  207 (391)
T 3dr4_A          131 NLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAI  207 (391)
T ss_dssp             SBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSS
T ss_pred             CcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCc
Confidence              78999999998888888   5789999999999999999999999999999976654322222  478888866  99


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhhcC--------------CCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEG--------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF  267 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  267 (301)
                      +++  | ++|+++.+++.+.+.+........              ..+....++.....++.+.+..++..++++++.+.
T Consensus       208 l~~--g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~  284 (391)
T 3dr4_A          208 ITT--G-EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQK  284 (391)
T ss_dssp             SCC--B-SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCc--C-CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            854  2 478888887777666554432211              23455555555555566777778888888899999


Q ss_pred             HHhCCCcc
Q 022194          268 LASHPRVK  275 (301)
Q Consensus       268 l~~~~~v~  275 (301)
                      |++. ++.
T Consensus       285 L~~~-g~~  291 (391)
T 3dr4_A          285 LARL-GNR  291 (391)
T ss_dssp             HGGG-TTS
T ss_pred             hhcC-Ccc
Confidence            9876 443

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.90  E-value=5.9e-23  Score=183.33  Aligned_cols=211  Identities=10%  Similarity=0.114  Sum_probs=158.4

Q ss_pred             hHHHHHHHHHhhcCCCc---eEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           56 TRDALESLLAKLDKADR---ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~~---~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ..++++++++++++.+.   .++++||++++. ++..++++||+|+++++.|++..  +...++..|.+++.++.+    
T Consensus        47 ~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~  124 (411)
T 3nnk_A           47 YMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGEV  124 (411)
T ss_dssp             HHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCCC
Confidence            37889999999998763   344456788885 66778999999999999998731  125566778899988876    


Q ss_pred             -CHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccC
Q 022194          128 -DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       128 -d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (301)
                       |++++++++++ ++++|++++|+||||.+.|+++|+++|++||+++|+|++++.+... .....++|+++.|+||++++
T Consensus       125 ~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~  204 (411)
T 3nnk_A          125 FTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGG  204 (411)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCC
T ss_pred             CCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCC
Confidence             89999999985 8999999999999999999999999999999999999999876653 34455789999999999777


Q ss_pred             CCCceeeEEEEcchhHHHHHHHhh------------------------------------hhcCCCCCHHhHHHHHcccc
Q 022194          205 HSDVMAGVLAVKGERLAKELYFLQ------------------------------------NAEGSGLAPFDCWICLRGVK  248 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~l~  248 (301)
                      +.|  .|+++.+++ +.+.+....                                    .....+.+.....++..+++
T Consensus       205 ~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~  281 (411)
T 3nnk_A          205 PSG--TSPITLSAR-MEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECAR  281 (411)
T ss_dssp             CSS--EEEEEECHH-HHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH
T ss_pred             CCc--eEEEEECHH-HHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHH
Confidence            765  588888754 444443321                                    00112334444433333333


Q ss_pred             c-----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          249 T-----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       249 ~-----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .     +.+..++..++++++.+.|++.
T Consensus       282 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~  309 (411)
T 3nnk_A          282 LILQEGLDYGIARHKLHGDALVKGIQAM  309 (411)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            2     4566677888888898888875

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.90  E-value=8.7e-23  Score=183.47  Aligned_cols=207  Identities=15%  Similarity=0.075  Sum_probs=150.1

Q ss_pred             HHHHHHHHHhhcCCC-ceEEecch-HHHH--H-HHHhccC--C----------CCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           57 RDALESLLAKLDKAD-RALCFTSG-MAAL--A-AVTHLLG--T----------GEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~~sG-~~ai--~-~~~~~~~--~----------g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..++++.++++++.+ +.+++++| ++++  . ++..+++  |          ||+|++++|.|+.+.    ..++..|.
T Consensus        80 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~----~~~~~~g~  155 (427)
T 3ppl_A           80 IVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHF----SITERFGF  155 (427)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHH----HHHHHTTC
T ss_pred             cHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHH----HHHHHcCC
Confidence            466777777777765 45555555 6888  3 4455566  6          899999999999987    55567788


Q ss_pred             EEEEecCC----CHHHHHhhcC-CCceEEEEe-CCCCCccccccHH---HHHHHH-HHcCCEEEEeCCcCCccccC----
Q 022194          120 VVKRVNTC----DLDEVASAIG-PWTKLVWVE-SPTNPRQQICDIR---KIAEMA-HAHGALLLVDNSIMSPVLSR----  185 (301)
Q Consensus       120 ~~~~~~~~----d~~~l~~~l~-~~~~~v~i~-~~~np~G~~~~l~---~l~~l~-~~~~~~li~D~~~~~~~~~~----  185 (301)
                      +++.++.+    |+++++++++ +++++|+++ +++||||.+.+.+   +|+++| +++|+++|+||+|+...+..    
T Consensus       156 ~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~  235 (427)
T 3ppl_A          156 EMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPE  235 (427)
T ss_dssp             EEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCC
T ss_pred             EEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCC
Confidence            88888764    8999999995 678888866 8899999998755   888888 99999999999998643321    


Q ss_pred             ---c-------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc------
Q 022194          186 ---P-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------  249 (301)
Q Consensus       186 ---~-------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------  249 (301)
                         .       ...+.+++++||||++ + +|++.|+++++ +.+.+.+.......+...+...+.++...++.      
T Consensus       236 ~~~~~~~~~~~~~~~~~i~~~S~SK~~-~-~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~  312 (427)
T 3ppl_A          236 VIDIVGLGEAAGNPNRFWAFTSTSKIT-L-AGAGVSFFLTS-AENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRA  312 (427)
T ss_dssp             CCCHHHHHHHTTCTTSEEEEEESTTTS-C-TTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHH
T ss_pred             ccchhhhhhccCCCCcEEEEechhhcc-C-cCccEEEEEcC-HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHH
Confidence               0       1346789999999993 4 47899999987 45666666666655666666665555444433      


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHh
Q 022194          250 -MALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       250 -~~~~~~~~~~~~~~l~~~l~~  270 (301)
                       +.+.++.+.++.+.+.+.|++
T Consensus       313 ~~~~~~~~~~~~~~~l~~~L~~  334 (427)
T 3ppl_A          313 VMRKHAASLAPKFNKVLEILDS  334 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence             334445566666666666654

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.90  E-value=2.8e-22  Score=179.64  Aligned_cols=213  Identities=20%  Similarity=0.224  Sum_probs=161.2

Q ss_pred             CCch-HHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           53 GNPT-RDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        53 g~~~-~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      |.+. ++++++.+++++|.++.+++++|++|+. ++..+ +++||+|+++.|.|+++..    .+...|.+++.++.+  
T Consensus        39 g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~  114 (418)
T 2c81_A           39 GEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATAT----AVLNVNALPVFVDVEAD  114 (418)
T ss_dssp             SSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHH----HHHHTTCEEEEECBCTT
T ss_pred             CCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHH----HHHHcCCEEEEEecCCC
Confidence            5554 8999999999999998999999999986 55666 7899999999999999974    445678888888764  


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcc-ccC-ccCCCCcEEEecc--c
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-LSR-PLELGADIVMHSA--T  199 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~-~~~-~~~~~~di~~~S~--s  199 (301)
                          |++++++++++++++|+++   ||+|...++++|.++|+++|+++|+|++|+.+. +.. ....-.|+++.||  |
T Consensus       115 ~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~  191 (418)
T 2c81_A          115 TYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQG  191 (418)
T ss_dssp             TCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred             CCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCC
Confidence                7899999998889988854   589999999999999999999999999999876 321 1111236888888  9


Q ss_pred             ccccCCCCceeeEEEEcchhHHHHHHHhhhhc--------------C------C------CCCHHhHHHHHcccccHHHH
Q 022194          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE--------------G------S------GLAPFDCWICLRGVKTMALR  253 (301)
Q Consensus       200 K~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~--------------~------~------~~~~~~~~~~~~~l~~~~~~  253 (301)
                      |+++ + | ++|+++.+++.+.+.+.......              .      .      .+....++.....++.+.+.
T Consensus       192 K~~~-~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~  268 (418)
T 2c81_A          192 KVLT-A-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDK  268 (418)
T ss_dssp             SSSC-S-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHH
T ss_pred             cccC-C-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHH
Confidence            9994 4 5 68999987666656554332210              0      0      02233333444455667777


Q ss_pred             HHHHHHHHHHHHHHHHhCCCcc
Q 022194          254 VEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      .++..++++++.+.|++++++.
T Consensus       269 ~~~~~~~~~~l~~~L~~~~g~~  290 (418)
T 2c81_A          269 NAIREKNAMFLNDALSKIDGIK  290 (418)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTEE
T ss_pred             HHHHHHHHHHHHHHhccCCCcc
Confidence            7888888899999998876654

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.90  E-value=7e-23  Score=183.15  Aligned_cols=221  Identities=14%  Similarity=0.111  Sum_probs=149.3

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhc----CCCceEE--ecchHHHHHHH---HhccCCC-----CeEEEcCCCCccHHHHH
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLD----KADRALC--FTSGMAALAAV---THLLGTG-----EEIVAGDDLYGGTDRLL  110 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~----~~~~~i~--~~sG~~ai~~~---~~~~~~g-----~~Vlv~~~~y~~~~~~~  110 (301)
                      ..|.+. |.+. ++++.+++...+    ..+++++  +++|++|+.++   .+++++|     |+|+++.|.|+++.   
T Consensus        68 ~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~---  144 (412)
T 1ajs_A           68 HEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHN---  144 (412)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHH---
T ss_pred             cCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHH---
Confidence            345443 4333 445555543332    2356666  67778998644   3456899     99999999999987   


Q ss_pred             hhhcccCCcE-EEEecC---C----CHHHHHhhcCC---CceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeC
Q 022194          111 SRVTPKTGVV-VKRVNT---C----DLDEVASAIGP---WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDN  176 (301)
Q Consensus       111 ~~~~~~~g~~-~~~~~~---~----d~~~l~~~l~~---~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~  176 (301)
                       ..++..|.+ ++.++.   +    |++++++++.+   +++++++++|+||||.+.+   +++|+++|+++|+++|+||
T Consensus       145 -~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De  223 (412)
T 1ajs_A          145 -GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDS  223 (412)
T ss_dssp             -HHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             -HHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence             444556777 777765   3    78999888863   6778889999999999965   6789999999999999999


Q ss_pred             CcCCccccC------cc-----CCCCcEEEecccccccCCCCceeeEEEE---cchh---HHHHHHHhhhhcCCCCCHHh
Q 022194          177 SIMSPVLSR------PL-----ELGADIVMHSATKFIAGHSDVMAGVLAV---KGER---LAKELYFLQNAEGSGLAPFD  239 (301)
Q Consensus       177 ~~~~~~~~~------~~-----~~~~di~~~S~sK~~~g~~g~~~g~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~  239 (301)
                      +|....+..      +.     ....++++.|+||.+ |++|+|.|++++   +++.   +.+.+.........+.++..
T Consensus       224 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (412)
T 1ajs_A          224 AYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF-GLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQG  302 (412)
T ss_dssp             SCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHH
T ss_pred             ccccccCCcccccchHHHHHhccCCcEEEEEeccccc-CCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHH
Confidence            987544321      11     123469999999999 667899999998   5432   33333332222222335555


Q ss_pred             HHHHHcccc----------cHHHHHHHHHHHHHHHHHHHHhCC
Q 022194          240 CWICLRGVK----------TMALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       240 ~~~~~~~l~----------~~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      ++++...++          .+.+.++++.++.+++.+.|+++.
T Consensus       303 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1ajs_A          303 ARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK  345 (412)
T ss_dssp             HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            555444443          334566777888888888888764

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.90  E-value=5.8e-23  Score=182.77  Aligned_cols=215  Identities=17%  Similarity=0.092  Sum_probs=157.7

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhcc----CCCC-eEEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL----GTGE-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~----~~g~-~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      +..++++++++++++.+  +++++++|++|+. ++..++    ++|| +|+++++.|+++...+... ...|.+++.++.
T Consensus        63 ~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~  141 (400)
T 3vax_A           63 RGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHL-AGRGFEVDFLTP  141 (400)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHH-HTTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHH-HhcCCeEEEEcc
Confidence            34789999999999986  4566666689986 455555    7899 9999999999987666433 567899999987


Q ss_pred             C-----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-ccCCCCcEEEecccc
Q 022194          127 C-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATK  200 (301)
Q Consensus       127 ~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~S~sK  200 (301)
                      +     |++++++++++++++|++++++||||.+.|+++|+++|+++|+++|+|++|+.+.... .... .|+++.|+||
T Consensus       142 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K  220 (400)
T 3vax_A          142 GPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHK  220 (400)
T ss_dssp             CTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGG
T ss_pred             CCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHH
Confidence            5     8999999999999999999999999999999999999999999999999998766432 2233 8999999999


Q ss_pred             cccCCCCceeeEEE-EcchhHH---HHHHHh-------hhhcCCCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHH
Q 022194          201 FIAGHSDVMAGVLA-VKGERLA---KELYFL-------QNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIA  265 (301)
Q Consensus       201 ~~~g~~g~~~g~~~-~~~~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~  265 (301)
                      ++ |+.|  .|+++ ++++.+.   ..+...       ......+.+.....++..+++    .+.+.+++..++++++.
T Consensus       221 ~~-g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~  297 (400)
T 3vax_A          221 IG-APKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLL  297 (400)
T ss_dssp             GT-SCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             hC-CCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            65 6666  46776 6652111   000010       011223344444444433333    34566777888888888


Q ss_pred             HHHHhCCCcc
Q 022194          266 EFLASHPRVK  275 (301)
Q Consensus       266 ~~l~~~~~v~  275 (301)
                      +.|+ .+++.
T Consensus       298 ~~L~-~~~~~  306 (400)
T 3vax_A          298 AGLA-STSFQ  306 (400)
T ss_dssp             HHHT-TTTCE
T ss_pred             HhhC-CCCEE
Confidence            8887 66653

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.90  E-value=3.1e-23  Score=184.64  Aligned_cols=209  Identities=15%  Similarity=0.179  Sum_probs=152.8

Q ss_pred             HHHHHHHHHhhcCCC-ceEEe-cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----CH
Q 022194           57 RDALESLLAKLDKAD-RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DL  129 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~-~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----d~  129 (301)
                      ..++++.+++++|.+ +.+++ ++|++++. ++..++++||+|+++.|.|+++.    ..++..|.+++.++.+    |+
T Consensus        76 ~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~d~  151 (397)
T 2zyj_A           76 YAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAI----QAFRLQGPRFLTVPAGEEGPDL  151 (397)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTCCEEEEEEEETTEECH
T ss_pred             CHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcCCEEEecCcCCCCCCH
Confidence            567777788777764 44544 55568886 56667889999999999999987    4445678888887753    78


Q ss_pred             HHHHhhcCC-CceEE-EEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-----ccCC------CCcE
Q 022194          130 DEVASAIGP-WTKLV-WVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PLEL------GADI  193 (301)
Q Consensus       130 ~~l~~~l~~-~~~~v-~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~~~~------~~di  193 (301)
                      +++++++++ ++++| ++++|+||||.+.+   +++|+++|+++|+++|+||+|+.+.+..     ....      +.++
T Consensus       152 ~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i  231 (397)
T 2zyj_A          152 DALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVI  231 (397)
T ss_dssp             HHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEE
T ss_pred             HHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEE
Confidence            999998875 78887 46899999999986   5589999999999999999998754421     1111      4559


Q ss_pred             EEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc-----cHHHHHHHHHHHHHHHHHHH
Q 022194          194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFL  268 (301)
Q Consensus       194 ~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l  268 (301)
                      ++.|+||+++  +|++.|+++++ +.+.+.+.........+.++..+.++...++     .+.+..+++.++++.+.+.|
T Consensus       232 ~~~s~sK~~~--~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  308 (397)
T 2zyj_A          232 YLGSFSKVLS--PGLRVAFAVAH-PEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHAL  308 (397)
T ss_dssp             EEEESTTTTC--GGGCCEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccccc--ccceeEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999995  67889999987 4566655554444333446665555544443     24555667778888888888


Q ss_pred             Hh-CC
Q 022194          269 AS-HP  272 (301)
Q Consensus       269 ~~-~~  272 (301)
                      ++ .+
T Consensus       309 ~~~~~  313 (397)
T 2zyj_A          309 DREVP  313 (397)
T ss_dssp             HHHSC
T ss_pred             HHHCC
Confidence            76 45

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.90  E-value=2.4e-23  Score=183.76  Aligned_cols=214  Identities=16%  Similarity=0.166  Sum_probs=154.5

Q ss_pred             CchHHHHHHHHHhhcCC-CceEEecchHHHHHHHHh----cc---CCC-CeEEEcCCCCccHHHHHhhhccc----CCc-
Q 022194           54 NPTRDALESLLAKLDKA-DRALCFTSGMAALAAVTH----LL---GTG-EEIVAGDDLYGGTDRLLSRVTPK----TGV-  119 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~-~~~i~~~sG~~ai~~~~~----~~---~~g-~~Vlv~~~~y~~~~~~~~~~~~~----~g~-  119 (301)
                      .+...++++.+++++|. +++++++||++++.+++.    +.   ++| |+|++++|.|+++...+......    .+. 
T Consensus        69 ~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~  148 (375)
T 2eh6_A           69 NPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFE  148 (375)
T ss_dssp             CHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTC
T ss_pred             CHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCC
Confidence            34578899999999998 677777888899864432    34   778 99999999999875433222111    122 


Q ss_pred             ----EEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CccccC---cc
Q 022194          120 ----VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR---PL  187 (301)
Q Consensus       120 ----~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~-~~~~~~---~~  187 (301)
                          .+..++..|++++++++++++++|++++++||||.+.+    +++|+++|+++|+++|+||+|+ .+....   ..
T Consensus       149 ~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~  228 (375)
T 2eh6_A          149 PLVPGFSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQ  228 (375)
T ss_dssp             SCCSSEEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGG
T ss_pred             CCCCCceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhh
Confidence                26666667999999999989999999999999999977    9999999999999999999998 332221   12


Q ss_pred             CCC--CcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHH
Q 022194          188 ELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIA  265 (301)
Q Consensus       188 ~~~--~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~  265 (301)
                      ..+  .|++  |+||++++  |++.|++++++ .+.+.+.........+.++..+.++...++.+.+..+++.++++++.
T Consensus       229 ~~~~~~d~~--s~SK~~~~--g~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~  303 (375)
T 2eh6_A          229 HFNLKPDVI--ALAKGLGG--GVPIGAILARE-EVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGNYFK  303 (375)
T ss_dssp             GGTCCCSEE--EECGGGGT--TSCCEEEEEEH-HHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCEE--EEcccccC--CCCeEEEEEcH-HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234  5665  67799963  57789999875 44443322112233445666666666666655566677888888899


Q ss_pred             HHHHhCC
Q 022194          266 EFLASHP  272 (301)
Q Consensus       266 ~~l~~~~  272 (301)
                      +.|++++
T Consensus       304 ~~L~~~~  310 (375)
T 2eh6_A          304 EKLKELG  310 (375)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9998764

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.90  E-value=6.3e-23  Score=182.36  Aligned_cols=254  Identities=14%  Similarity=0.062  Sum_probs=161.9

Q ss_pred             ceeeecCCCCCCCCcc----ccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhc----CCCceEE--ecc
Q 022194           11 TLLMNFSNEFDPYGAL----STPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLD----KADRALC--FTS   78 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~----~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~----~~~~~i~--~~s   78 (301)
                      ..+++|+ .++|+...    .+|.+.........  ......|.+. |.+. ++++.+++.+..    ..+++++  +++
T Consensus        26 ~~~i~l~-~g~~~~~~~~~~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g  102 (396)
T 2q7w_A           26 PGKINLG-IGVYKDETGKTPVLTSVKKAEQYLLE--NETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPG  102 (396)
T ss_dssp             --CEESS-CCSCCCTTSCCCCCHHHHHHHHHHHH--HCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred             CCceecc-cccccCCCCCccCcHHHHHHHHhhcC--cccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEeccc
Confidence            3578998 56653322    22333332111100  0022345433 4433 555555553332    2345555  666


Q ss_pred             hHHHHHHHHh---ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC---C----CHHHHHhhcCC---CceEEEE
Q 022194           79 GMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C----DLDEVASAIGP---WTKLVWV  145 (301)
Q Consensus        79 G~~ai~~~~~---~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~---~~~~v~i  145 (301)
                      |++++.++..   .+.+||+|++++|.|+++.    ..++..|.+++.++.   +    |++++++.+++   +++++++
T Consensus       103 ~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~  178 (396)
T 2q7w_A          103 GTGALRVAADFLAKNTSVKRVWVSNPSWPNHK----SVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH  178 (396)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEEEESCCTHHH----HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEE
T ss_pred             chhhHHHHHHHHHHhCCCCEEEEcCCCchhHH----HHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEe
Confidence            7899864433   2469999999999999987    445567888888886   3    79999999874   4678888


Q ss_pred             eCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-----cc-----CCCCcEEEecccccccCCCCceeeE
Q 022194          146 ESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PL-----ELGADIVMHSATKFIAGHSDVMAGV  212 (301)
Q Consensus       146 ~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~~-----~~~~di~~~S~sK~~~g~~g~~~g~  212 (301)
                      ++|+||||.+.+   +++|+++|+++|+++|+||+|....+..     +.     ....++++.|+||++ |++|+|.|+
T Consensus       179 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~  257 (396)
T 2q7w_A          179 GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNF-GLYNERVGA  257 (396)
T ss_dssp             CSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccc-cccccccce
Confidence            999999999975   6789999999999999999998654320     11     123579999999999 667889999


Q ss_pred             EEE--cch----hHHHHHHHhhhhcCCCCCHHhHHHHHccccc----------HHHHHHHHHHHHHHHHHHHHhCC
Q 022194          213 LAV--KGE----RLAKELYFLQNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       213 ~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      +++  +++    .+.+.+.........+.++..+.++...++.          +.+..+++.++++.+.+.|+++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  333 (396)
T 2q7w_A          258 CTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG  333 (396)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            987  333    3433333322222233466655555554432          33445667778888888888764

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.90  E-value=4.3e-22  Score=175.57  Aligned_cols=212  Identities=16%  Similarity=0.173  Sum_probs=161.2

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc---cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .+...++++.++++++.+++++++||++|+. ++..+   +++||+|+++++.|+++...    +...|.+++.++.+  
T Consensus        31 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~  106 (375)
T 2fnu_A           31 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANM----LLESGYTPVFAGIKND  106 (375)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHH----HHHTTCEEEECCBCTT
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHH----HHHCCCEEEEeccCCC
Confidence            3558899999999999988888888899986 56666   78999999999999999744    34578899888864  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCC--CcEEEeccc--c
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--K  200 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~--~di~~~S~s--K  200 (301)
                         |++++++++++++++|+++++   +|.+.|+++|.++|+++|+++|+|++|+.+........+  .|+++.|+|  |
T Consensus       107 ~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K  183 (375)
T 2fnu_A          107 GNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIK  183 (375)
T ss_dssp             SSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTS
T ss_pred             CCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCC
Confidence               789999999888998888776   899999999999999999999999999877643221111  378888888  9


Q ss_pred             cccCCCCceeeEEEEcchhHHHHHHHhhhhc--------------C--CCCCHHhHHHHHcccccHHHHHHHHHHHHHHH
Q 022194          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAE--------------G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKI  264 (301)
Q Consensus       201 ~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (301)
                      ++ ++ |+ +++++.+++.+.+.+.......              +  ..+++..++.....++.+.+..++..++++++
T Consensus       184 ~~-~~-g~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  260 (375)
T 2fnu_A          184 PI-TT-AE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTY  260 (375)
T ss_dssp             SS-CC-SS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             Cc-cc-cC-ceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 55 53 4444435455666554433211              1  24555555555555667778888899999999


Q ss_pred             HHHHHhCCCcc
Q 022194          265 AEFLASHPRVK  275 (301)
Q Consensus       265 ~~~l~~~~~v~  275 (301)
                      .+.|++++++.
T Consensus       261 ~~~L~~~~~~~  271 (375)
T 2fnu_A          261 DRIFKDNPYFT  271 (375)
T ss_dssp             HHHHTTCSSEE
T ss_pred             HHHhhcCCCcc
Confidence            99999887653

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.90  E-value=3.4e-23  Score=190.49  Aligned_cols=214  Identities=18%  Similarity=0.190  Sum_probs=158.8

Q ss_pred             HHHHHHHHHhhcCCC----ce--EEecchHHHHH-HHHhccCCC--------CeEEEcCCCCccHHHHHhhhcccCCcEE
Q 022194           57 RDALESLLAKLDKAD----RA--LCFTSGMAALA-AVTHLLGTG--------EEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~----~~--i~~~sG~~ai~-~~~~~~~~g--------~~Vlv~~~~y~~~~~~~~~~~~~~g~~~  121 (301)
                      .+++++++++++|.+    ++  +++++|++++. ++..+.+++        |+|+++.+.|+++.    ..++..|.++
T Consensus       141 e~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~----~~~~~~G~~v  216 (514)
T 3mad_A          141 EAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFD----KAAQYFGIKL  216 (514)
T ss_dssp             HHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHH----HHHHHHTCEE
T ss_pred             HHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHH----HHHHHcCCee
Confidence            566778889999876    44  77788889985 555566555        89999999999986    5555678899


Q ss_pred             EEecCC-----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccc------------c
Q 022194          122 KRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL------------S  184 (301)
Q Consensus       122 ~~~~~~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~------------~  184 (301)
                      +.++.+     |++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++|+.+..            .
T Consensus       217 ~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~  296 (514)
T 3mad_A          217 VRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPF  296 (514)
T ss_dssp             EEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCC
T ss_pred             EEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcc
Confidence            999876     89999999999999999999999999999999999999999999999999986533            1


Q ss_pred             CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh----------cCCCCC---HHhHHHHHccc--cc
Q 022194          185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA----------EGSGLA---PFDCWICLRGV--KT  249 (301)
Q Consensus       185 ~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~l--~~  249 (301)
                      .....++|+++.|+||++.++.+  .|+++.+++.+..........          ...+..   ...+++++..+  ..
T Consensus       297 ~~~~~g~d~~~~s~~K~l~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~  374 (514)
T 3mad_A          297 DFRLEGVTSVSADTHKYGYGAKG--TSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG  374 (514)
T ss_dssp             STTSTTCCEEEECTTTTTCCCSS--CEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCcEEEECchhccCCCCC--eEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHH
Confidence            22345789999999999766544  688888876554321100000          001112   22334444333  23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcce
Q 022194          250 MALRVEKQQDNAQKIAEFLASHPRVKK  276 (301)
Q Consensus       250 ~~~~~~~~~~~~~~l~~~l~~~~~v~~  276 (301)
                      +.+..++..++++++.+.|++++++..
T Consensus       375 ~~~~~~~~~~~~~~l~~~L~~~~g~~~  401 (514)
T 3mad_A          375 YLDATRRILQAADRLKAGVRAIPSLKI  401 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence            566778888999999999998776543

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.90  E-value=2e-22  Score=179.00  Aligned_cols=208  Identities=19%  Similarity=0.244  Sum_probs=161.5

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      +...++++.++++++.+++++++||++|+. ++..+ +++||+|++++|.|+++.    ..++..|.+++.++.+     
T Consensus        39 ~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~  114 (393)
T 1mdo_A           39 PKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTL----NMIVLLGANPVMVDVDRDTLM  114 (393)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHH----HHHHHTTCEEEEECBCTTTCC
T ss_pred             hHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHH----HHHHHCCCEEEEEeccCCcCC
Confidence            558899999999999988889999999996 55666 789999999999999986    4445678888888753     


Q ss_pred             -CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCC-CcEEEeccc--cccc
Q 022194          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG-ADIVMHSAT--KFIA  203 (301)
Q Consensus       128 -d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~-~di~~~S~s--K~~~  203 (301)
                       |++++++++++++++|+++   ||+|...++++|.++|+++|+++|+|++|+.+........+ .|+++.|+|  |+++
T Consensus       115 ~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K~l~  191 (393)
T 1mdo_A          115 VTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNIT  191 (393)
T ss_dssp             BCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSC
T ss_pred             CCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCCccc
Confidence             7899999998888988865   47999999999999999999999999999976533222345 899999999  8885


Q ss_pred             CCCCceeeEEEEcchhHHHHHHHhhhhc----------------------C--CCCCHHhHHHHHcccccHHHHHHHHHH
Q 022194          204 GHSDVMAGVLAVKGERLAKELYFLQNAE----------------------G--SGLAPFDCWICLRGVKTMALRVEKQQD  259 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~~~~~~~----------------------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~  259 (301)
                      +  + ++|+++.+++.+.+.+.......                      +  ..+++..++.....++.+.+..++..+
T Consensus       192 ~--~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~  268 (393)
T 1mdo_A          192 C--A-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAA  268 (393)
T ss_dssp             S--S-SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             c--c-cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  3 58999887666666554432210                      0  123555555555556667777777788


Q ss_pred             HHHHHHHHHHhCC
Q 022194          260 NAQKIAEFLASHP  272 (301)
Q Consensus       260 ~~~~l~~~l~~~~  272 (301)
                      +++++.+.|++++
T Consensus       269 ~~~~l~~~L~~~~  281 (393)
T 1mdo_A          269 IAAQYHQAMADLP  281 (393)
T ss_dssp             HHHHHHHHHHTSS
T ss_pred             HHHHHHHHHhcCC
Confidence            8889999998875

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.83  E-value=1.7e-25  Score=198.87  Aligned_cols=254  Identities=16%  Similarity=0.170  Sum_probs=169.1

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC----CCceEEecchHHHHH-H
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK----ADRALCFTSGMAALA-A   85 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~----~~~~i~~~sG~~ai~-~   85 (301)
                      ..+++|+ .+++ +...+|.+.......   .....+.|...-.+.++++.+++.+.+|    .++++++++|++++. +
T Consensus        31 ~~~i~l~-~~~~-~~~~~~~v~~a~~~~---~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~  105 (392)
T 3b1d_A           31 PQLLPAW-IADM-DFEVMPEVKQAIHDY---AEQLVYGYTYASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIA  105 (392)
Confidence            3678887 4444 333456555443221   1112334443311226666666666655    234555555578886 5


Q ss_pred             HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC--------CCHHHHHhhcC-CCceEEEEeCCCCCccccc
Q 022194           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~-~~~~~v~i~~~~np~G~~~  156 (301)
                      +..++++||+|+++.|.|+++.    ..+...|.+++.++.        .|+++++++++ .++++|++++|+||||.+.
T Consensus       106 ~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~  181 (392)
T 3b1d_A          106 IQAFTKEGEAVLINSPVYPPFA----RSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVW  181 (392)
Confidence            6667889999999999999986    455667777777765        26788888887 6789999999999999997


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCccccC-----c---cC--CCCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----P---LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       157 ~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-----~---~~--~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                      +   +++|+++|+++|+++|+||+|+...+..     .   ..  .+.++++.|+||++ |.+|++.|+++++++.+.+.
T Consensus       182 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~  260 (392)
T 3b1d_A          182 EREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTF-NIAGTKNSYAIIENPTLCAQ  260 (392)
Confidence            5   8999999999999999999998644321     1   11  45679999999999 55678999999876656665


Q ss_pred             HHHhhhhcC-CCCCHHhHHHHHcccc----cHHHHHHHHHHHHHHHHHHHHh-CCCc
Q 022194          224 LYFLQNAEG-SGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLAS-HPRV  274 (301)
Q Consensus       224 ~~~~~~~~~-~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~-~~~v  274 (301)
                      +.......+ .+.++..+.++...++    .+.+.++++.++++.+.+.|++ ++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  317 (392)
T 3b1d_A          261 FKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRL  317 (392)
Confidence            554443332 1234444443333332    3455566677777788888876 5554

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.90  E-value=7.6e-23  Score=178.69  Aligned_cols=209  Identities=15%  Similarity=0.120  Sum_probs=152.5

Q ss_pred             HHHHHHHHHhhcCCC---ceEEe-cchHHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           57 RDALESLLAKLDKAD---RALCF-TSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~-~sG~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      ..++++++++++|.+   +.+++ ++|++++..+...+.. |+|+++++.|+++  .+...++..|.+++.++.+     
T Consensus        35 ~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~-d~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~  111 (353)
T 2yrr_A           35 NRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR-GPVLVLVNGAFSQ--RVAEMAALHGLDPEVLDFPPGEPV  111 (353)
T ss_dssp             HHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC-CCEEEEECSHHHH--HHHHHHHHTTCCEEEEECCTTSCC
T ss_pred             HHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC-CcEEEEcCCCchH--HHHHHHHHcCCceEEEeCCCCCCC
Confidence            789999999999874   44544 5667998755444333 8999999999886  2335556678888888863     


Q ss_pred             CHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-ccCCCCcEEEecccccccCC
Q 022194          128 DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIAGH  205 (301)
Q Consensus       128 d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~S~sK~~~g~  205 (301)
                      |++++++.+++ ++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.... ....+.|+++.|++|+++++
T Consensus       112 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~  191 (353)
T 2yrr_A          112 DPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAP  191 (353)
T ss_dssp             CHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCC
T ss_pred             CHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCC
Confidence            78999999887 89999999999999999999999999999999999999998665432 22346799999999988777


Q ss_pred             CCceeeEEEEcchhHHHHHH-------------H-h-hhhcCCCCCHHhHHHHHccccc-----HHHHHHHHHHHHHHHH
Q 022194          206 SDVMAGVLAVKGERLAKELY-------------F-L-QNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIA  265 (301)
Q Consensus       206 ~g~~~g~~~~~~~~~~~~~~-------------~-~-~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~  265 (301)
                      +|  .|+++++++.+ +.+.             . . ......+.+.....++..+++.     +.+.+++..++++++.
T Consensus       192 ~g--~G~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  268 (353)
T 2yrr_A          192 PG--LAPIAASLEAR-KAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVL  268 (353)
T ss_dssp             SS--CEEEEECHHHH-HHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             Cc--eEEEEECHHHH-HHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            77  48888876533 3322             0 0 1112234454444443333333     4456678888888899


Q ss_pred             HHHHhC
Q 022194          266 EFLASH  271 (301)
Q Consensus       266 ~~l~~~  271 (301)
                      +.|++.
T Consensus       269 ~~L~~~  274 (353)
T 2yrr_A          269 EELKAR  274 (353)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            999875

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.90  E-value=5.6e-22  Score=178.06  Aligned_cols=211  Identities=20%  Similarity=0.223  Sum_probs=159.0

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------C
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------D  128 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------d  128 (301)
                      +...++++.++++++.+++++++||++++.+++..+.+||+|++++|.|+++..    .+...|.+++.++.+      |
T Consensus        52 ~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~~gd~Vlv~~~~~~~~~~----~~~~~G~~~~~v~~~~~~~~~d  127 (424)
T 2po3_A           52 PLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAGLTGEVIMPSMTFAATPH----ALRWIGLTPVFADIDPDTGNLD  127 (424)
T ss_dssp             HHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHTCCSEEEEESSSCTHHHH----HHHHTTCEEEEECBCTTTSSBC
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCEEEECCCccHHHHH----HHHHcCCEEEEEecCCCcCCcC
Confidence            558899999999999988888888899997555555688999999999999873    445678888888754      7


Q ss_pred             HHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC--ccCCCCcEEEeccc--ccccC
Q 022194          129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSAT--KFIAG  204 (301)
Q Consensus       129 ~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~--~~~~~~di~~~S~s--K~~~g  204 (301)
                      ++++++++++++++|++++   |+|...++++|+++|+++|+++|+|++|+.+....  ......|+++.|+|  |++++
T Consensus       128 ~~~l~~~i~~~~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~l~~  204 (424)
T 2po3_A          128 PDQVAAAVTPRTSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNA  204 (424)
T ss_dssp             HHHHGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC
T ss_pred             HHHHHHhhCcCCcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCCccC
Confidence            8999999988899998864   89999999999999999999999999998644321  12222589999999  77743


Q ss_pred             CCCceeeEEEEcchhHHHHHHHhhhhc------------CCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCC
Q 022194          205 HSDVMAGVLAVKGERLAKELYFLQNAE------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                         .++|+++.+++.+.+.+.......            ...+++..++..+..++.+.+..++..++.+++.+.|++++
T Consensus       205 ---~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~  281 (424)
T 2po3_A          205 ---FEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADLP  281 (424)
T ss_dssp             ---SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCT
T ss_pred             ---CCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence               368999988556666554433211            11234555555555555566666777778888888888776


Q ss_pred             Ccc
Q 022194          273 RVK  275 (301)
Q Consensus       273 ~v~  275 (301)
                      ++.
T Consensus       282 g~~  284 (424)
T 2po3_A          282 GVL  284 (424)
T ss_dssp             TEE
T ss_pred             Ccc
Confidence            653

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.90  E-value=1.2e-22  Score=179.25  Aligned_cols=212  Identities=12%  Similarity=0.047  Sum_probs=153.1

Q ss_pred             chHHHHHHHHHhhcCCC---ceEEe-cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           55 PTRDALESLLAKLDKAD---RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~---~~i~~-~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      +.+++++++++++++.+   +.+++ +||++++. ++..++++||+|++++|.|++..  +...+...|.++..++.+  
T Consensus        52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  129 (376)
T 3f0h_A           52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHR--FVQLCEIHEIPYVALKLEHG  129 (376)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHTTCCEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCC
Confidence            34788999999999876   45553 55589985 66678899999999998777643  224456667788777653  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-ccCCCCcEEEeccccccc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~S~sK~~~  203 (301)
                         |++++++++++++++|++++|+||||.+.|+++|+++|+++|+++|+|++++.+.... ....++|+++.|+||+++
T Consensus       130 ~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~  209 (376)
T 3f0h_A          130 KKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLA  209 (376)
T ss_dssp             CCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTC
T ss_pred             CCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCccccc
Confidence               7899999888899999999999999999999999999999999999999998776542 334578999999999997


Q ss_pred             CCCCceeeEEEEcchhHHHHHHHhhh-----------------hcCCCCCHHhHHHHHccccc------HHHHHHHHHHH
Q 022194          204 GHSDVMAGVLAVKGERLAKELYFLQN-----------------AEGSGLAPFDCWICLRGVKT------MALRVEKQQDN  260 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~  260 (301)
                      +++|+  |+++.+++ +.+.+.....                 ....+.+....+++..+++.      +.+..++..++
T Consensus       210 ~~~G~--g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  286 (376)
T 3f0h_A          210 CPPGI--SVIVLAPR-GVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQ  286 (376)
T ss_dssp             CCSSC--EEEEECHH-HHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             CCCce--EEEEECHH-HHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            67774  77777654 4444332110                 01223333222333333332      34556667777


Q ss_pred             HHHHHHHHHhC
Q 022194          261 AQKIAEFLASH  271 (301)
Q Consensus       261 ~~~l~~~l~~~  271 (301)
                      ++++.+.|+++
T Consensus       287 ~~~l~~~L~~~  297 (376)
T 3f0h_A          287 AADFRAKIKDL  297 (376)
T ss_dssp             HHHHHHHTTTS
T ss_pred             HHHHHHHHHHc
Confidence            77788877765

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.90  E-value=8.8e-22  Score=175.35  Aligned_cols=219  Identities=16%  Similarity=0.113  Sum_probs=151.8

Q ss_pred             CCccccCC-CCch-HHHHHHHHHhhcCC----Cc--eEEecchHHHHH-HHHhccC--CCCeEEEcCCCCccHHHHHhhh
Q 022194           45 GPYDYTRS-GNPT-RDALESLLAKLDKA----DR--ALCFTSGMAALA-AVTHLLG--TGEEIVAGDDLYGGTDRLLSRV  113 (301)
Q Consensus        45 ~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~--~i~~~sG~~ai~-~~~~~~~--~g~~Vlv~~~~y~~~~~~~~~~  113 (301)
                      ....|.+. |.+. ++++.+++.+..+.    ++  .+++++|++|+. ++..+++  | |+|++++|.|..+.    ..
T Consensus        64 ~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~----~~  138 (405)
T 3k7y_A           64 KEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHV----NM  138 (405)
T ss_dssp             CCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHH----HH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHH----HH
Confidence            34567776 8776 88888888665542    22  245555578886 4445555  8 99999999999997    56


Q ss_pred             cccCCcEEEEecCC-------CHHHHHhhcC--CCceEEEEeCC-CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 022194          114 TPKTGVVVKRVNTC-------DLDEVASAIG--PWTKLVWVESP-TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (301)
Q Consensus       114 ~~~~g~~~~~~~~~-------d~~~l~~~l~--~~~~~v~i~~~-~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~  180 (301)
                      ++..|.+++.++..       |++.+++.+.  ++++++++++| |||||.+.+   +++|+++|++||+++|+||+|..
T Consensus       139 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~  218 (405)
T 3k7y_A          139 IESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQG  218 (405)
T ss_dssp             HHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTT
T ss_pred             HHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCccc
Confidence            67889999988751       7899998886  35678888765 899999975   77799999999999999999975


Q ss_pred             ccccC------c-----cCCCCcEEEecccccccCCCCceeeEEEE--cchhHHHHHH----HhhhhcCCCCCHHhHHHH
Q 022194          181 PVLSR------P-----LELGADIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELY----FLQNAEGSGLAPFDCWIC  243 (301)
Q Consensus       181 ~~~~~------~-----~~~~~di~~~S~sK~~~g~~g~~~g~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  243 (301)
                      ..+..      .     ......+++.||||+| +.+|+|.|++++  .++.+.+.+.    ..........+...+.++
T Consensus       219 l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~  297 (405)
T 3k7y_A          219 FGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNM-SLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRIL  297 (405)
T ss_dssp             TSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTS-CCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             ccCCCcccchHHHHHHHhcCCcEEEEeeCCccC-CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence            44321      0     1124679999999999 667899999864  4455444332    222222223333433333


Q ss_pred             Hccc----------ccHHHHHHHHHHHHHHHHHHHH
Q 022194          244 LRGV----------KTMALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       244 ~~~l----------~~~~~~~~~~~~~~~~l~~~l~  269 (301)
                      ...+          +.+.+.++++.++++.+.+.|+
T Consensus       298 ~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~  333 (405)
T 3k7y_A          298 CQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLE  333 (405)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222          2234455668888888999998

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.90  E-value=3.3e-22  Score=184.44  Aligned_cols=163  Identities=18%  Similarity=0.224  Sum_probs=126.2

Q ss_pred             CCch-HHHHHHHHHhhcCC-------CceEEecchHHHHHH-HHh-----ccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           53 GNPT-RDALESLLAKLDKA-------DRALCFTSGMAALAA-VTH-----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        53 g~~~-~~~l~~~l~~~~~~-------~~~i~~~sG~~ai~~-~~~-----~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      |.+. ++++.+.+.+.++.       ++++++++|++++.. +..     ++++||+|++++|.|+++.    ..+...|
T Consensus       139 g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~----~~~~~~g  214 (533)
T 3f6t_A          139 CLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYL----RIPELKD  214 (533)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHH----TSGGGGG
T ss_pred             cHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHH----HHHHHcC
Confidence            5555 77777777666232       244555555788864 444     7899999999999999886    6666778


Q ss_pred             cEEEEecCC---------CHHHHHhhcCCCceEEEEeCCCCCccccccH---HHHHHHHH-HcCCEEEEeCCcCCccccC
Q 022194          119 VVVKRVNTC---------DLDEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAH-AHGALLLVDNSIMSPVLSR  185 (301)
Q Consensus       119 ~~~~~~~~~---------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l---~~l~~l~~-~~~~~li~D~~~~~~~~~~  185 (301)
                      ..++.++.+         |++++++++++++++|++++|+||||.+.+.   ++|+++|+ +||+++|+||+|+......
T Consensus       215 ~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~  294 (533)
T 3f6t_A          215 YELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF  294 (533)
T ss_dssp             SEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC
T ss_pred             CeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc
Confidence            888877753         7899999999999999999999999999875   47888888 6899999999998544321


Q ss_pred             c----cCCCCcEEEecccccccCCCCceeeEEEEcchhH
Q 022194          186 P----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (301)
Q Consensus       186 ~----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~  220 (301)
                      .    ...+.++++.||||.+ |++|+|.|+++++++.+
T Consensus       295 ~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~~~~  332 (533)
T 3f6t_A          295 KSIYSVVPYNTMLVYSYSKLF-GCTGWRLGVIALNEKNV  332 (533)
T ss_dssp             CCHHHHSGGGEEEEEESHHHH-TCGGGCEEEEEEESSCH
T ss_pred             cCHhhcCCCCEEEEecCcccC-CCcccceEEEEECcHHH
Confidence            1    1224679999999999 66789999999987633

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.89  E-value=9.9e-23  Score=177.94  Aligned_cols=212  Identities=22%  Similarity=0.231  Sum_probs=144.1

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      .+...++++++++++|.++.+++++|++++. ++..++++||+|++++|.|....... ..+...|.+++.+ .+     
T Consensus        37 ~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v-~~~~~~~  114 (347)
T 1jg8_A           37 DPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPV-PGKNGAM  114 (347)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEE-CEETTEE
T ss_pred             ChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhcccc-chhhccCeEEEEe-cCCCCcc
Confidence            4558899999999999998999999998875 66667899999999999986543100 1344567788777 32     


Q ss_pred             CHHHHHhhcCC------CceEEEEeCCCCCc-ccccc---HHHHHHHHHHcCCEEEEeCCcCCcc---cc-C--ccCCCC
Q 022194          128 DLDEVASAIGP------WTKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMSPV---LS-R--PLELGA  191 (301)
Q Consensus       128 d~~~l~~~l~~------~~~~v~i~~~~np~-G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~---~~-~--~~~~~~  191 (301)
                      |++++++++++      ++++|++++|+||| |.+.+   +++|+++|+++|+++|+|++|..+.   .. .  ....+.
T Consensus       115 d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~  194 (347)
T 1jg8_A          115 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYA  194 (347)
T ss_dssp             CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTC
T ss_pred             CHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccc
Confidence            89999999875      68999999999999 99865   6789999999999999999874321   11 1  112357


Q ss_pred             cEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCC--CHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHH
Q 022194          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       192 di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~  269 (301)
                      |.++.|+||+++++   .+++++.+ +.+.+.+.......+.+.  +...+.....+++...+..++..++++++.+.|+
T Consensus       195 d~~~~s~sK~l~~~---~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~  270 (347)
T 1jg8_A          195 DSVMFCLSKGLCAP---VGSVVVGD-RDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLK  270 (347)
T ss_dssp             SEEEEESSSTTCCS---SCEEEEEC-HHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHH
T ss_pred             cEEEEecccccCCC---ceEEEEcC-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999654   24455554 455555544433333322  3333333333332211222334456677777776


Q ss_pred             hC
Q 022194          270 SH  271 (301)
Q Consensus       270 ~~  271 (301)
                      ++
T Consensus       271 ~~  272 (347)
T 1jg8_A          271 EI  272 (347)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.89  E-value=5.9e-22  Score=175.24  Aligned_cols=212  Identities=10%  Similarity=0.063  Sum_probs=150.8

Q ss_pred             HHHHHHHHHhhcCC------CceEEecchHHHHH-HHHhcc---CCCCeEEEcC-CCCccHHHHHhhhcccCCcEEEEec
Q 022194           57 RDALESLLAKLDKA------DRALCFTSGMAALA-AVTHLL---GTGEEIVAGD-DLYGGTDRLLSRVTPKTGVVVKRVN  125 (301)
Q Consensus        57 ~~~l~~~l~~~~~~------~~~i~~~sG~~ai~-~~~~~~---~~g~~Vlv~~-~~y~~~~~~~~~~~~~~g~~~~~~~  125 (301)
                      ..++++++++.++.      +++++++||++++. ++..+.   ++||+|++.+ +.|+...   ...++..|.+++.++
T Consensus        40 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~---~~~~~~~g~~~~~v~  116 (385)
T 2bkw_A           40 FQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRF---ADCLRSYGAQVDVVR  116 (385)
T ss_dssp             HHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH---HHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHH---HHHHHHcCCceEEEe
Confidence            56677788877765      24556667789986 555565   8999998874 4555442   134556788998888


Q ss_pred             C-C-----CHHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCcccc-CccCCCCcEEE
Q 022194          126 T-C-----DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVM  195 (301)
Q Consensus       126 ~-~-----d~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~--~~~li~D~~~~~~~~~-~~~~~~~di~~  195 (301)
                      . +     |++++++++++ ++++|++++++||||.+.|+++|+++|+++  |+++|+|++|+.+... .....++|+++
T Consensus       117 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~  196 (385)
T 2bkw_A          117 PLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFAL  196 (385)
T ss_dssp             CSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEE
T ss_pred             cCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEE
Confidence            7 3     78999999876 799999999999999999999999999999  9999999999876543 23345789999


Q ss_pred             ecccccccCCCCceeeEEEEcchhHHHHH------------------HHh--hhhc-----CCCCCHHhHHHHHccccc-
Q 022194          196 HSATKFIAGHSDVMAGVLAVKGERLAKEL------------------YFL--QNAE-----GSGLAPFDCWICLRGVKT-  249 (301)
Q Consensus       196 ~S~sK~~~g~~g~~~g~~~~~~~~~~~~~------------------~~~--~~~~-----~~~~~~~~~~~~~~~l~~-  249 (301)
                      +|+||+++|++|+  |+++++++.+.+.+                  ...  ....     ..+.+.....++..+++. 
T Consensus       197 ~s~~K~~~~~~G~--G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~  274 (385)
T 2bkw_A          197 TASQKAIGAPAGL--SISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI  274 (385)
T ss_dssp             EESSSTTCCCSCE--EEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred             ecCccccccCCcc--eEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence            9999988777774  88888765443122                  110  0111     123444444444344333 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHH-HhCCCc
Q 022194          250 ----MALRVEKQQDNAQKIAEFL-ASHPRV  274 (301)
Q Consensus       250 ----~~~~~~~~~~~~~~l~~~l-~~~~~v  274 (301)
                          +.+.+++..++++++.+.| +++ ++
T Consensus       275 ~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~  303 (385)
T 2bkw_A          275 LEEGLHKRWDLHREMSDWFKDSLVNGL-QL  303 (385)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHTTT-CC
T ss_pred             HHccHHHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence                3455677888888999999 765 44

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.89  E-value=1.4e-23  Score=186.88  Aligned_cols=247  Identities=15%  Similarity=0.125  Sum_probs=164.6

Q ss_pred             ceeeecCCCC---CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEF---DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~---~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~   87 (301)
                      ..++||+ ++   +++|. ++|.+........+.   .......+..+.++++++.+++++|.+++++++||++|+.+++
T Consensus        40 ~~~ld~~-~~~~~~~lg~-~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al  114 (397)
T 2ord_A           40 NAYLDFT-SGIAVNVLGH-SHPRLVEAIKDQAEK---LIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAI  114 (397)
T ss_dssp             CEEEESS-HHHHTCTTCB-TCHHHHHHHHHHHHH---CSCCCTTSEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHH
T ss_pred             CEEEECC-ccccccccCC-CCHHHHHHHHHHHHh---cccCccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHH
Confidence            4688998 44   88998 455454432221110   0010001123558999999999999888888899999986444


Q ss_pred             h-ccC------C-CCeEEEcCCCCccHHHHHhhhcccCCcE------------EEEecCCCHHHHHhhcCCCceEEEEeC
Q 022194           88 H-LLG------T-GEEIVAGDDLYGGTDRLLSRVTPKTGVV------------VKRVNTCDLDEVASAIGPWTKLVWVES  147 (301)
Q Consensus        88 ~-~~~------~-g~~Vlv~~~~y~~~~~~~~~~~~~~g~~------------~~~~~~~d~~~l~~~l~~~~~~v~i~~  147 (301)
                      . +..      + +++|++.+|.|++....   .+...|.+            +..++..|++++++++++++++|++++
T Consensus       115 ~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~---~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~  191 (397)
T 2ord_A          115 KIARKYGKKKSEKKYRILSAHNSFHGRTLG---SLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEP  191 (397)
T ss_dssp             HHHHHHHHHHCTTCCEEEEEBTCCCCSSHH---HHHHSBCHHHHGGGCSCCTTEEEECTTCHHHHHHHCCTTEEEEEECS
T ss_pred             HHHHHHhhcCCCCCceEEEEcCCcCCCchh---hhhccCChhhccccCCCCCCeeEecCCCHHHHHHHhhcCeEEEEEec
Confidence            4 332      4 57899999999875431   11222222            677777899999999998999999999


Q ss_pred             CCCCccc-c---ccHHHHHHHHHHcCCEEEEeCCcCCccc-cCcc---CCC--CcEEEecccccccCCCCceeeEEEEcc
Q 022194          148 PTNPRQQ-I---CDIRKIAEMAHAHGALLLVDNSIMSPVL-SRPL---ELG--ADIVMHSATKFIAGHSDVMAGVLAVKG  217 (301)
Q Consensus       148 ~~np~G~-~---~~l~~l~~l~~~~~~~li~D~~~~~~~~-~~~~---~~~--~di~~~S~sK~~~g~~g~~~g~~~~~~  217 (301)
                      |+||||. +   .++++|+++|+++|+++|+||+|+.... ....   ..+  .|++  |+||+++  +|++.|++++++
T Consensus       192 ~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~--~G~r~G~~~~~~  267 (397)
T 2ord_A          192 IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLG--GGVPIGAVIVNE  267 (397)
T ss_dssp             EECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG--TTSCCEEEEECS
T ss_pred             ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccC--CCcCeEEEEEch
Confidence            9999999 3   4699999999999999999999973221 1111   122  5654  7899996  467889999887


Q ss_pred             hhHHHHHHHhhhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHhC
Q 022194          218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +..  .+...........++..++++..+++.+  .+.++++.++++++.+.|++.
T Consensus       268 ~~~--~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (397)
T 2ord_A          268 RAN--VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEM  321 (397)
T ss_dssp             TTC--CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhc--ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            643  3322122333455666666665555433  335567777777777777653

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.89  E-value=6e-23  Score=184.19  Aligned_cols=252  Identities=16%  Similarity=0.133  Sum_probs=166.1

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      ..++||+++  .+++|. ++|.+........+.   ..+....+..+.+.+++++++++++.+++++++||++|+.+++.
T Consensus        57 ~~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~---~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~  132 (420)
T 2pb2_A           57 KEYIDFAGGIAVTALGH-CHPALVEALKSQGET---LWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFK  132 (420)
T ss_dssp             CEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTT---CCCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHH
T ss_pred             CEEEEccccccccccCC-CCHHHHHHHHHHHHh---cccccCccCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHH
Confidence            468999733  278898 455555443222111   11111112345689999999999998888888999999864444


Q ss_pred             -ccC-------CC-CeEEEcCCCCccHHHHHhhhcc---------cCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCC
Q 022194           89 -LLG-------TG-EEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (301)
Q Consensus        89 -~~~-------~g-~~Vlv~~~~y~~~~~~~~~~~~---------~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~n  150 (301)
                       +..       +| ++|++.+|.|++..........         .....+..++..|++++++++++++++|++++++|
T Consensus       133 ~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~le~~i~~~~~~vi~~p~~~  212 (420)
T 2pb2_A          133 LARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQG  212 (420)
T ss_dssp             HHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHHHHHHHCCTTEEEEEECSEET
T ss_pred             HHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHHHHHHHhccCceEEEEeCCcC
Confidence             433       66 5899999999887432211111         11123666777799999999998999999999988


Q ss_pred             Ccccc----ccHHHHHHHHHHcCCEEEEeCCcCCccc-cCc-----cCCCCcEEEecccccccCCCCceeeEEEEcchhH
Q 022194          151 PRQQI----CDIRKIAEMAHAHGALLLVDNSIMSPVL-SRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (301)
Q Consensus       151 p~G~~----~~l~~l~~l~~~~~~~li~D~~~~~~~~-~~~-----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~  220 (301)
                      ++|..    .++++|+++|++||+++|+||+|..... ...     .....|++  |+||+++  +|++.|+++++++ +
T Consensus       213 ~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~--~G~~iG~~~~~~~-l  287 (420)
T 2pb2_A          213 EGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALG--GGFPVSAMLTTQE-I  287 (420)
T ss_dssp             TTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG--TTSCCEEEEECHH-H
T ss_pred             CCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Eeccccc--CCCceEEEEEhHH-H
Confidence            77762    3699999999999999999999963221 111     12235665  6899995  4678899998754 5


Q ss_pred             HHHHHHhhhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHhC
Q 022194          221 AKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+.+.......+...++..++++...++.+  .+..++..++.+++.+.|++.
T Consensus       288 ~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~  340 (420)
T 2pb2_A          288 ASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAI  340 (420)
T ss_dssp             HTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            443322222333456777776666655543  355667777777787777653

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.89  E-value=4.9e-22  Score=177.10  Aligned_cols=210  Identities=15%  Similarity=0.163  Sum_probs=142.7

Q ss_pred             HHHHHHHHHhh--cC-C--CceEEecchHHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcE-EEEecCCCHH
Q 022194           57 RDALESLLAKL--DK-A--DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV-VKRVNTCDLD  130 (301)
Q Consensus        57 ~~~l~~~l~~~--~~-~--~~~i~~~sG~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~-~~~~~~~d~~  130 (301)
                      ..++++.++++  +| .  +++++++++++++.++..++++||+|++++|.|+++..    .++..|.+ ++.++.++.+
T Consensus        77 ~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~~~~~~gd~Vl~~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~  152 (400)
T 3asa_A           77 LPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLD----IARLTGAKEIIALPCLQEN  152 (400)
T ss_dssp             CHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHHHHHCSSCEEEEEESCCHHHHH----HHHHTTCSEEEEEECCGGG
T ss_pred             CHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHHHHcCCCCEEEECCCCcHHHHH----HHHHcCCcceEecccchhc
Confidence            46677777777  46 3  34445555568887777778899999999999999873    34456776 7777754211


Q ss_pred             HHHhhcC--CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcccc-----CccCC----CCcEEEe
Q 022194          131 EVASAIG--PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLEL----GADIVMH  196 (301)
Q Consensus       131 ~l~~~l~--~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~~~~----~~di~~~  196 (301)
                      .+...+.  +++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+.....     .....    +.++++.
T Consensus       153 ~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  232 (400)
T 3asa_A          153 AFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEIN  232 (400)
T ss_dssp             TTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEE
T ss_pred             CcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEe
Confidence            1111111  57899999999999999986   677899999999999999999843221     11111    2469999


Q ss_pred             cccccccCCCCceeeEEEEcchhH------HHHHHH-hhhhcCCCCCHHhHHHHHcccc--cHHHHHHHHHHHHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERL------AKELYF-LQNAEGSGLAPFDCWICLRGVK--TMALRVEKQQDNAQKIAEF  267 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~  267 (301)
                      |+||++ |++|+|.|+++++++..      ...+.. ......++.+...+.++...++  .+.+.++++.++++++.+.
T Consensus       233 s~sK~~-g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~  311 (400)
T 3asa_A          233 SFSKPL-GFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKA  311 (400)
T ss_dssp             ECCGGG-TTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             cchhhc-CCcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999 56788999999876551      333322 2222223455555544444333  3455667788888889999


Q ss_pred             HHhC
Q 022194          268 LASH  271 (301)
Q Consensus       268 l~~~  271 (301)
                      |++.
T Consensus       312 L~~~  315 (400)
T 3asa_A          312 LLAT  315 (400)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            9875

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.89  E-value=7.2e-23  Score=182.05  Aligned_cols=253  Identities=18%  Similarity=0.153  Sum_probs=163.8

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      ..++||+++.  +++|. .+|.+.........  . .......+..+.++++++.++++++  .+++++++||++|+.++
T Consensus        45 ~~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~--~-~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~a  120 (395)
T 1vef_A           45 NEYIDCVGGYGVANLGH-GNPEVVEAVKRQAE--T-LMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAA  120 (395)
T ss_dssp             CEEEESSHHHHTCTTCB-TCHHHHHHHHHHHH--H-CCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHH
T ss_pred             CEEEEccCccccccCCC-CCHHHHHHHHHHHH--h-CCCCccccCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHH
Confidence            3678887332  57786 34444333211111  0 0110011234568999999999995  45677778888998644


Q ss_pred             Hhcc---CCCCeEEEcCCCCccHHHHHhhhccc---------CCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccc
Q 022194           87 THLL---GTGEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (301)
Q Consensus        87 ~~~~---~~g~~Vlv~~~~y~~~~~~~~~~~~~---------~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~  154 (301)
                      +..+   .+|++|++.++.|++....+......         ....+..++..|++++++++++++++|++++++||||.
T Consensus       121 l~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~  200 (395)
T 1vef_A          121 LKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGV  200 (395)
T ss_dssp             HHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTS
T ss_pred             HHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCc
Confidence            4332   57899999999998654221111111         11125566667999999999988999998888899999


Q ss_pred             ccc----HHHHHHHHHHcCCEEEEeCCcCCcc-ccCc-----cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          155 ICD----IRKIAEMAHAHGALLLVDNSIMSPV-LSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       155 ~~~----l~~l~~l~~~~~~~li~D~~~~~~~-~~~~-----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                      +.+    +++|+++|++||+++|+||+|+... ....     .....|++  |+||++++  |++.|+++++++ +.+.+
T Consensus       201 ~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~--g~~~G~~~~~~~-~~~~l  275 (395)
T 1vef_A          201 RPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGG--GVPLGVAVMREE-VARSM  275 (395)
T ss_dssp             EECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT--TSSCEEEEEEHH-HHHTS
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccC--CCceEEEEehHH-HHhhh
Confidence            877    9999999999999999999998321 1111     12235655  88999964  577899998765 54433


Q ss_pred             HHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhCC
Q 022194          225 YFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      ...........++..++++..+++.+.  +..++..++++++.+.|++..
T Consensus       276 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~  325 (395)
T 1vef_A          276 PKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIP  325 (395)
T ss_dssp             CTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSC
T ss_pred             ccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence            221122334456666666666665543  345677778888888888754

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.89  E-value=2.3e-22  Score=178.69  Aligned_cols=252  Identities=14%  Similarity=0.080  Sum_probs=155.5

Q ss_pred             eeeecCCCCCCCCc----cccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhc-CCCceEE--ecchHHH
Q 022194           12 LLMNFSNEFDPYGA----LSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLD-KADRALC--FTSGMAA   82 (301)
Q Consensus        12 ~~~~~~~~~~~~g~----~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~-~~~~~i~--~~sG~~a   82 (301)
                      .+++|+ .+.|...    ..+|.+.........  ......|.+. |.+. ++++.+++.... ..+++++  +++|++|
T Consensus        27 ~~i~l~-~g~~~~~~~~~~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a  103 (394)
T 2ay1_A           27 GKIDLG-VGVYKDATGHTPIMRAVHAAEQRMLE--TETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGA  103 (394)
T ss_dssp             TCEECC-CCSCCCTTSCCCCCHHHHHHHHHHHH--HCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHH
T ss_pred             cccccc-cceeeCCCCCccCcHHHHHHHHHhcC--CcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhH
Confidence            578998 5665332    223433332211100  0123345443 4333 444444442211 2235555  6677899


Q ss_pred             HHHHH-hc--cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC---C----CHHHHHhhcCC---CceEEEEeCCC
Q 022194           83 LAAVT-HL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C----DLDEVASAIGP---WTKLVWVESPT  149 (301)
Q Consensus        83 i~~~~-~~--~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~---~~~~v~i~~~~  149 (301)
                      +.++. .+  +.+||+|+++.|.|+++..    .++..|.+++.++.   +    |++++++++++   +++++++++|+
T Consensus       104 ~~~~~~~~~~~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~  179 (394)
T 2ay1_A          104 LRQALELARMANPDLRVFVSDPTWPNHVS----IMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCH  179 (394)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEESCCHHHHH----HHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSC
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCChhHHH----HHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCC
Confidence            86443 33  3489999999999999873    44556777777776   3    78999988864   36777889999


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC------c--c-C-CCCcEEEecccccccCCCCceeeEEEE-
Q 022194          150 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR------P--L-E-LGADIVMHSATKFIAGHSDVMAGVLAV-  215 (301)
Q Consensus       150 np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~------~--~-~-~~~di~~~S~sK~~~g~~g~~~g~~~~-  215 (301)
                      ||||.+.+   +++|+++|+++|+++|+||+|+......      .  . . ...++++.|+||++ |++|+|.|++++ 
T Consensus       180 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~  258 (394)
T 2ay1_A          180 NPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNF-GIYRERTGCLLAL  258 (394)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTT-TCGGGCEEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCC-cCcCCccceEEEE
Confidence            99999975   6789999999999999999998654420      1  1 1 22468899999999 667889999997 


Q ss_pred             -cchhHHH----HHHHhhhhcCCCCCHHhHHHHHcccc----------cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          216 -KGERLAK----ELYFLQNAEGSGLAPFDCWICLRGVK----------TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       216 -~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                       +++.+.+    .+.........+.++..++++...++          .+.+..+++.++++.+.+.|+++
T Consensus       259 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (394)
T 2ay1_A          259 CADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDL  329 (394)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             3343322    22212112222234444444444332          24455566777777888877764

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.88  E-value=5.7e-22  Score=173.95  Aligned_cols=212  Identities=14%  Similarity=0.143  Sum_probs=151.4

Q ss_pred             chHHHHHHHHHhhcCCC----ceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           55 PTRDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~----~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      +..++++++++++++.+    ++++++||++|+. ++..++++||+|++.++.|++..  +...+...|.+++.++.+  
T Consensus        37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  114 (366)
T 1m32_A           37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGAR--MVEMAGLMGIAHHAYDCGEV  114 (366)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHH--HHHHHHHHTCCEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHH--HHHHHHHhCCceEEEeCCCC
Confidence            44788999999999843    3667777789986 66667789999887765444321  124445567777777753  


Q ss_pred             ---CHHHHHhhcCC--CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-ccCCCCcEEEeccccc
Q 022194          128 ---DLDEVASAIGP--WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF  201 (301)
Q Consensus       128 ---d~~~l~~~l~~--~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~S~sK~  201 (301)
                         |++++++++++  ++++|++++++||||.+.|+++|+++|++||+++|+|++|+.+.... ....+.|+++.|+||+
T Consensus       115 ~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~  194 (366)
T 1m32_A          115 ARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKC  194 (366)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSST
T ss_pred             CCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCccc
Confidence               78999998874  58899999999999999999999999999999999999998765532 2234689999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHh------------h---h---hcCCCCCHHhHHHHHccccc------HHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFL------------Q---N---AEGSGLAPFDCWICLRGVKT------MALRVEKQ  257 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~------------~---~---~~~~~~~~~~~~~~~~~l~~------~~~~~~~~  257 (301)
                      ++++.|  .|+++++++ +.+.+...            .   .   ....+.+....+++..+++.      +.+.++++
T Consensus       195 ~~~~~g--~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~  271 (366)
T 1m32_A          195 IQGVPG--FAFVIAREQ-KLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRY  271 (366)
T ss_dssp             TCCCSS--EEEEEEEHH-HHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             ccCCCc--eEEEEECHH-HHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHH
Confidence            877766  388888754 33322110            0   0   00134455544444444433      34566778


Q ss_pred             HHHHHHHHHHHHhC
Q 022194          258 QDNAQKIAEFLASH  271 (301)
Q Consensus       258 ~~~~~~l~~~l~~~  271 (301)
                      .++++++.+.|+++
T Consensus       272 ~~~~~~l~~~L~~~  285 (366)
T 1m32_A          272 QQNQRSLVAGMRAL  285 (366)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
Confidence            88888899998875

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.88  E-value=1.4e-21  Score=176.39  Aligned_cols=221  Identities=15%  Similarity=0.154  Sum_probs=150.5

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH-HHHhccCCCC--------------eEEEc-CCCCc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGE--------------EIVAG-DDLYG  104 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~~~~~~~~g~--------------~Vlv~-~~~y~  104 (301)
                      ..|... |.+. ++++.+++.+.+|.    ++++++++|++|+. ++..++++||              +|+++ +|.|+
T Consensus        77 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~  156 (444)
T 3if2_A           77 ANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYI  156 (444)
T ss_dssp             HSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCG
T ss_pred             hccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCcc
Confidence            345544 5444 66777777665543    35666666789986 5666788887              78875 89999


Q ss_pred             cHHHHHh--hhcccCCcEEEEecC----------CCHHHHHhh---cCCCceEEEEeCCCCCcccccc---HHHHHHHHH
Q 022194          105 GTDRLLS--RVTPKTGVVVKRVNT----------CDLDEVASA---IGPWTKLVWVESPTNPRQQICD---IRKIAEMAH  166 (301)
Q Consensus       105 ~~~~~~~--~~~~~~g~~~~~~~~----------~d~~~l~~~---l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~  166 (301)
                      .+.....  ..+...+..+..++.          .|+++++++   +.+++++|++++|+||||.+.+   +++|+++|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~  236 (444)
T 3if2_A          157 GYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAK  236 (444)
T ss_dssp             GGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             chhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHH
Confidence            8852110  134556777777763          388999988   6788999999999999999988   888999999


Q ss_pred             HcCCEEEEeCCcCCcccc------CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhH
Q 022194          167 AHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC  240 (301)
Q Consensus       167 ~~~~~li~D~~~~~~~~~------~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (301)
                      +||+++|+||+|+.+...      .+...+.++++.|+||+  +.+|++.|+++.+ +.+.+.+.......+...++..+
T Consensus       237 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~--~~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~~  313 (444)
T 3if2_A          237 RYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI--GLPGMRTGIIVAD-AKVIEAVSAMNAVVNLAPTRFGA  313 (444)
T ss_dssp             HTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT--TCGGGCCEEEECC-HHHHHHHHHHHHHHHSSCCCHHH
T ss_pred             HCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc--cCCCCceEEEEEC-HHHHHHHHHHHHhccCCCChHHH
Confidence            999999999999753211      11234678999999995  4567899999876 45656665555544444444444


Q ss_pred             HHHHccccc------HHH-HHHHHHHHHHHHHHHHHh
Q 022194          241 WICLRGVKT------MAL-RVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       241 ~~~~~~l~~------~~~-~~~~~~~~~~~l~~~l~~  270 (301)
                      .++...++.      ..+ ..+.+.++.+.+.+.|++
T Consensus       314 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  350 (444)
T 3if2_A          314 AIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQ  350 (444)
T ss_dssp             HHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443333222      112 345566677777777765

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.88  E-value=7.2e-22  Score=177.20  Aligned_cols=207  Identities=14%  Similarity=0.083  Sum_probs=147.2

Q ss_pred             HHHHHHHHHhhcCCC-ceEEecch-HHHHH---HHHhccC--C---------CCeEEEcCCCCccHHHHHhhhcccCCcE
Q 022194           57 RDALESLLAKLDKAD-RALCFTSG-MAALA---AVTHLLG--T---------GEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~~sG-~~ai~---~~~~~~~--~---------g~~Vlv~~~~y~~~~~~~~~~~~~~g~~  120 (301)
                      ..++++.++++++.+ +.+++++| ++++.   ++..+++  +         ||+|++++|.|+++.    ..++..|.+
T Consensus        72 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~  147 (423)
T 3ez1_A           72 LPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHF----LLLQTLGFE  147 (423)
T ss_dssp             CHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHH----HHHHHHTCE
T ss_pred             hHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHH----HHHHHcCCE
Confidence            567888888888765 45555555 68884   4455667  7         599999999999887    445567888


Q ss_pred             EEEecCC----CHHHHHhhc--CCCceEEEEe-CCCCCccccccHH---HHHHHH-HHcCCEEEEeCCcCCccccC----
Q 022194          121 VKRVNTC----DLDEVASAI--GPWTKLVWVE-SPTNPRQQICDIR---KIAEMA-HAHGALLLVDNSIMSPVLSR----  185 (301)
Q Consensus       121 ~~~~~~~----d~~~l~~~l--~~~~~~v~i~-~~~np~G~~~~l~---~l~~l~-~~~~~~li~D~~~~~~~~~~----  185 (301)
                      ++.++.+    |++++++++  .+++++|++. +|+||||.+.+.+   +|+++| +++|+++|+||+|....+..    
T Consensus       148 ~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~  227 (423)
T 3ez1_A          148 LLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRA  227 (423)
T ss_dssp             EEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCC
T ss_pred             EEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCC
Confidence            8888764    899999999  5788998765 8999999998755   888888 99999999999998432211    


Q ss_pred             ----c-------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc-----
Q 022194          186 ----P-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----  249 (301)
Q Consensus       186 ----~-------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----  249 (301)
                          .       ...+.++++.|+||++ + +|++.|+++.++ .+.+.+.......+...++..+.++...++.     
T Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~-~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  304 (423)
T 3ez1_A          228 EPVNFVVLARDAGYPDRAFVFASTSKIT-F-AGAGLGFVASSE-DNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGL  304 (423)
T ss_dssp             CCCCHHHHHHHHTCTTSEEEEEESTTTS-C-SSSSCEEEEECH-HHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHH
T ss_pred             CCcchhhhhhccCCCCeEEEEeCchhhc-c-CCcceEEEEeCH-HHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchH
Confidence                0       1346789999999984 4 478899999875 5666666666655666666655554333222     


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHh
Q 022194          250 ---MALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       250 ---~~~~~~~~~~~~~~l~~~l~~  270 (301)
                         +.+.++.+.++.+.+.+.|.+
T Consensus       305 ~~~~~~~~~~~~~~~~~l~~~l~~  328 (423)
T 3ez1_A          305 EGLMRDHAAIIAPKFRAVDEVLRA  328 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence               233444555555556655544

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.88  E-value=1e-21  Score=176.33  Aligned_cols=207  Identities=15%  Similarity=0.091  Sum_probs=146.5

Q ss_pred             HHHHHHHHHhhcCCC-ceEEecch-HHHH--HHHH-hccCC------------CCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           57 RDALESLLAKLDKAD-RALCFTSG-MAAL--AAVT-HLLGT------------GEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~~~sG-~~ai--~~~~-~~~~~------------g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..++++.++++++.+ +.+++++| ++++  .++. .+.++            +|+|++++|.|+++.    ..++..|.
T Consensus        78 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~----~~~~~~g~  153 (422)
T 3d6k_A           78 IADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHF----TITEHFGF  153 (422)
T ss_dssp             CHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHH----HHHHHHTC
T ss_pred             CHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHH----HHHHHcCC
Confidence            466777777777765 55666666 5776  4443 34444            347999999999997    44556688


Q ss_pred             EEEEecCC----CHHHHHhhcCC-CceEEE-EeCCCCCccccccHH---HHHHHHH-HcCCEEEEeCCcCCccc--c---
Q 022194          120 VVKRVNTC----DLDEVASAIGP-WTKLVW-VESPTNPRQQICDIR---KIAEMAH-AHGALLLVDNSIMSPVL--S---  184 (301)
Q Consensus       120 ~~~~~~~~----d~~~l~~~l~~-~~~~v~-i~~~~np~G~~~~l~---~l~~l~~-~~~~~li~D~~~~~~~~--~---  184 (301)
                      +++.++.+    |++++++++++ ++++|+ +++|+||||.+.+.+   +|+++|+ ++|+++|+||+|+...+  .   
T Consensus       154 ~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~  233 (422)
T 3d6k_A          154 EMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPI  233 (422)
T ss_dssp             EEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCC
T ss_pred             EEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCC
Confidence            88888763    78999999975 788888 689999999998755   7888888 99999999999974111  1   


Q ss_pred             --Cc-------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc------
Q 022194          185 --RP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------  249 (301)
Q Consensus       185 --~~-------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------  249 (301)
                        ..       ...+.++++.||||+ ++ +|+|.|+++++ +.+.+.+.........+.+...+.++...++.      
T Consensus       234 ~~~~~~~~~~~~~~~~~i~~~S~SK~-~~-~GlriG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~  310 (422)
T 3d6k_A          234 VHNVIEFAQAAGNPNRFWFMSSTSKI-TH-AGSGVSFFASS-KENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKA  310 (422)
T ss_dssp             CCCHHHHHHHTTCTTCEEEEEESTTT-SC-TTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHH
T ss_pred             CcChhhHhhccCCCCcEEEEcChhhh-cC-cccceEEEEeC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHH
Confidence              11       134678999999998 35 47899999987 45666666665555556667666665555443      


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHh
Q 022194          250 -MALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       250 -~~~~~~~~~~~~~~l~~~l~~  270 (301)
                       +.+.++.+.++.+.+.+.|++
T Consensus       311 ~~~~~~~~~~~~~~~l~~~L~~  332 (422)
T 3d6k_A          311 HMLKHAASLAPKFERVLEILDS  332 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence             333445555666667677654

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.88  E-value=1.3e-21  Score=171.48  Aligned_cols=211  Identities=10%  Similarity=0.062  Sum_probs=150.9

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           56 TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~---~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ..+++++++++++|.+   ++++++||++++. ++.+++++  .+++..+.+++.  .+...++..|.+++.++.+    
T Consensus        44 ~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~--~~i~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~  119 (362)
T 3ffr_A           44 VYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK--KSFHCVNGSFSK--RFYEFAGELGREAYKEEAAFGKG  119 (362)
T ss_dssp             HHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS--EEEEEECSHHHH--HHHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC--cEEEEcCcHHHH--HHHHHHHHhCCCeEEEecCCCCC
Confidence            3788999999999863   3556667789986 56667777  444444444432  1224566778888888764    


Q ss_pred             -CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc-CCEEEEeCCcCCccccCccCCCCcEEEecccccccCC
Q 022194          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGH  205 (301)
Q Consensus       128 -d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~-~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~  205 (301)
                       |+++++  +.+++++|++++|+||||.+.|+++|+++|++| |+++|+|++|+.+........ +|+++.|+||+++++
T Consensus       120 ~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~-~d~~~~s~~K~~~~~  196 (362)
T 3ffr_A          120 FYPADIT--VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTK-IDSVFFSVQKCFGLP  196 (362)
T ss_dssp             CCGGGCC--CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTS-CSEEEEETTSTTCCC
T ss_pred             CCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChhH-CcEEEEecccccCCC
Confidence             778887  678899999999999999999999999999999 999999999987765433322 899999999999768


Q ss_pred             CCceeeEEEEcchhHHHHHHHhhh---------------------hcCCCCCHHhHHHHHccccc-----HHHHHHHHHH
Q 022194          206 SDVMAGVLAVKGERLAKELYFLQN---------------------AEGSGLAPFDCWICLRGVKT-----MALRVEKQQD  259 (301)
Q Consensus       206 ~g~~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~  259 (301)
                      +|+  |+++.+++ +.+.+.....                     ....+.+.....++..+++.     +.+.+++..+
T Consensus       197 ~G~--g~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~  273 (362)
T 3ffr_A          197 AGL--GVWILNDR-VIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEE  273 (362)
T ss_dssp             SCC--EEEEEEHH-HHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             Cce--EEEEECHH-HHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            774  77777654 4444433322                     00233444444443333332     4667788888


Q ss_pred             HHHHHHHHHHhCCCcce
Q 022194          260 NAQKIAEFLASHPRVKK  276 (301)
Q Consensus       260 ~~~~l~~~l~~~~~v~~  276 (301)
                      +++++.+.|+++|++..
T Consensus       274 ~~~~l~~~L~~~~g~~~  290 (362)
T 3ffr_A          274 KAALINTYIESSKVFSF  290 (362)
T ss_dssp             HHHHHHHHHHHCSSEEE
T ss_pred             HHHHHHHHHHHccCcee
Confidence            99999999999877643

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.88  E-value=4.3e-22  Score=179.61  Aligned_cols=252  Identities=15%  Similarity=0.104  Sum_probs=167.9

Q ss_pred             ceeeecCCCCCCCCcc-ccCeeecceeecCCCCCCCCccccC-CCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNEFDPYGAL-STPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~-~~p~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      ..++||.++.++++.. ++|.+......+.+  . .. .+++ +..+.+.++++.++++++.+++++++||++|+.+++.
T Consensus        76 ~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~--~-~~-~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~  151 (439)
T 2oat_A           76 RKYFDFLSSYSAVNQGHCHPKIVNALKSQVD--K-LT-LTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACK  151 (439)
T ss_dssp             CEEEESSGGGGTTTTCBTCHHHHHHHHHHHT--T-CS-CCCTTSEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHH
T ss_pred             CEEEEccCCcccccCCCCCHHHHHHHHHHHH--h-cC-cccCccCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHH
Confidence            4789998666665544 45555544322211  1 11 1111 1234589999999999998888889999999864433


Q ss_pred             c-c---------CCC-CeEEEcCCCCccHHHHHhhhcc---------cCCcEEEEecCCCHHHHHhhcC-CCceEEEEeC
Q 022194           89 L-L---------GTG-EEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTCDLDEVASAIG-PWTKLVWVES  147 (301)
Q Consensus        89 ~-~---------~~g-~~Vlv~~~~y~~~~~~~~~~~~---------~~g~~~~~~~~~d~~~l~~~l~-~~~~~v~i~~  147 (301)
                      + .         .+| |+|++.++.||+..........         .....+..++..|+++++++++ +++++|+++.
T Consensus       152 ~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep  231 (439)
T 2oat_A          152 LARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEP  231 (439)
T ss_dssp             HHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECS
T ss_pred             HHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEEC
Confidence            3 2         356 8999999999886432212111         1114566777789999999994 6788888887


Q ss_pred             CCCCccccc----cHHHHHHHHHHcCCEEEEeCCcCCccc-cCc---cCC--CCcEEEecccccccCCCC-ceeeEEEEc
Q 022194          148 PTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMSPVL-SRP---LEL--GADIVMHSATKFIAGHSD-VMAGVLAVK  216 (301)
Q Consensus       148 ~~np~G~~~----~l~~l~~l~~~~~~~li~D~~~~~~~~-~~~---~~~--~~di~~~S~sK~~~g~~g-~~~g~~~~~  216 (301)
                      .++++|.+.    ++++|.++|++||+++|+||+|..... ...   ...  ..|++  |++|++++  | +++|+++++
T Consensus       232 ~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~--G~~~~G~v~~~  307 (439)
T 2oat_A          232 IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG--GLYPVSAVLCD  307 (439)
T ss_dssp             SBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT--TSSCCEEEEEC
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccC--CCCCeEEEEEC
Confidence            777889876    699999999999999999999953211 111   112  34654  89999964  5 678999987


Q ss_pred             chhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhC
Q 022194          217 GERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  271 (301)
                      + .+.+.+.........+.++..++++...++.+.  +..++..++.+++.+.|++.
T Consensus       308 ~-~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l  363 (439)
T 2oat_A          308 D-DIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL  363 (439)
T ss_dssp             H-HHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTS
T ss_pred             H-HHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            5 444433322233344567777777766666553  35577778888888888774

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.88  E-value=3.9e-21  Score=170.96  Aligned_cols=207  Identities=16%  Similarity=0.131  Sum_probs=157.1

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      +...++++.++++++.+++++++||++|+. ++..+ +++||+|++++|.|+++...+    ...|.+++.++.+     
T Consensus        32 ~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~  107 (394)
T 1o69_A           32 EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPI----CYLKAKPVFIDCDETYNI  107 (394)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHH----HHTTCEEEEECBCTTSSB
T ss_pred             hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHH----HHcCCEEEEEEeCCCCCc
Confidence            568999999999999988888899999996 55666 789999999999999997443    4578888888854     


Q ss_pred             CHHHHHhhcCC---CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCcc---C-CCCcEEEecccc
Q 022194          128 DLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL---E-LGADIVMHSATK  200 (301)
Q Consensus       128 d~~~l~~~l~~---~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~---~-~~~di~~~S~sK  200 (301)
                      |++++++++++   ++++|++++   |+|...++++|.++|+++|+++|+|++|+.+......   . .+.|+...|.+|
T Consensus       108 d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K  184 (394)
T 1o69_A          108 DVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNK  184 (394)
T ss_dssp             CHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTS
T ss_pred             CHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCc
Confidence            78999988875   789999885   7999999999999999999999999999865432211   1 134555556689


Q ss_pred             cccCCCCceeeEEEEcchhHHHHHHHhhhhcC--------------CCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHH
Q 022194          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEG--------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  266 (301)
Q Consensus       201 ~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~  266 (301)
                      .+++ .  ++|+++++++.+.+.+........              ..+++..+.+.+..++.+.+..++..++.+++.+
T Consensus       185 ~l~~-~--~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~  261 (394)
T 1o69_A          185 IITT-S--GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKE  261 (394)
T ss_dssp             SSCC-S--SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-C--CceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8843 2  579999976666665554332210              0034455555555567788888889999999999


Q ss_pred             HHHhC
Q 022194          267 FLASH  271 (301)
Q Consensus       267 ~l~~~  271 (301)
                      .|++.
T Consensus       262 ~L~~~  266 (394)
T 1o69_A          262 FLGEY  266 (394)
T ss_dssp             HHTTT
T ss_pred             Hhccc
Confidence            99875

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.88  E-value=2.3e-22  Score=181.02  Aligned_cols=251  Identities=14%  Similarity=0.125  Sum_probs=158.3

Q ss_pred             ceeeecCCCCCCCCcc-ccCeeecceeecCCCCCCCCccccC-CCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNEFDPYGAL-STPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~-~~p~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      ..++||.++.+++... ++|.+......+.+.  ..  .+++ +..+.+.++++.++++++.+++++++||++|+.+++.
T Consensus        65 ~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~--~~--~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~  140 (433)
T 1z7d_A           65 KRYYDFLSAYSSVNQGHCHPNILNAMINQAKN--LT--ICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYK  140 (433)
T ss_dssp             CEEEESSHHHHTTTTCBTCHHHHHHHHHHHTT--CS--CCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHH
T ss_pred             CEEEEcccchhhcccCCCCHHHHHHHHHHHHh--CC--CccCCcCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHH
Confidence            4688998545554443 445554443222111  11  1121 1234589999999999998888899999999864433


Q ss_pred             cc----------CCC-CeEEEcCCCCccHHHHHhhhcc---------cCCcEEEEecCCCHHHHHhhc-CCCceEEEEeC
Q 022194           89 LL----------GTG-EEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTCDLDEVASAI-GPWTKLVWVES  147 (301)
Q Consensus        89 ~~----------~~g-~~Vlv~~~~y~~~~~~~~~~~~---------~~g~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~  147 (301)
                      ++          .+| ++|++.++.||+..........         .....+..++..|++++++++ .+++++|+++.
T Consensus       141 ~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep  220 (433)
T 1z7d_A          141 LCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEP  220 (433)
T ss_dssp             HHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECS
T ss_pred             HHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEEC
Confidence            32          367 9999999999987432111111         001355667777999999999 57788888887


Q ss_pred             CCCCccccc----cHHHHHHHHHHcCCEEEEeCCcCCccc-cCc---cC--CCCcEEEecccccccCCCC-ceeeEEEEc
Q 022194          148 PTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMSPVL-SRP---LE--LGADIVMHSATKFIAGHSD-VMAGVLAVK  216 (301)
Q Consensus       148 ~~np~G~~~----~l~~l~~l~~~~~~~li~D~~~~~~~~-~~~---~~--~~~di~~~S~sK~~~g~~g-~~~g~~~~~  216 (301)
                      .++++|.+.    ++++|.++|++||+++|+||+|..... ...   ..  ...|++  |++|+++  +| +++|+++++
T Consensus       221 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~--~G~~~~G~v~~~  296 (433)
T 1z7d_A          221 IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALS--GGHYPISAVLAN  296 (433)
T ss_dssp             SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG--TTSSCCEEEEEC
T ss_pred             CCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECcccc--CCCCCeEEEEEC
Confidence            777889875    699999999999999999999963211 111   11  234554  8999995  36 778999987


Q ss_pred             chhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          217 GERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      + .+.+.+...........++..++++...++.+.  +..++..++.+++.+.|++
T Consensus       297 ~-~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  351 (433)
T 1z7d_A          297 D-DIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKR  351 (433)
T ss_dssp             H-HHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            5 444433222223334567777777766666543  3456667777777777765

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.88  E-value=2.2e-21  Score=173.59  Aligned_cols=218  Identities=17%  Similarity=0.183  Sum_probs=145.2

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC----CceEEecchHHHHH-HHHhccCCCC-----eEEEc-CCCCccHHHHHh--h
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGE-----EIVAG-DDLYGGTDRLLS--R  112 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG~~ai~-~~~~~~~~g~-----~Vlv~-~~~y~~~~~~~~--~  112 (301)
                      .|... |.+. ++++.+++.+.+|.    ++++++++|++|+. ++..++++||     +|+++ .|.|+++.....  .
T Consensus        70 ~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~  149 (417)
T 3g7q_A           70 NYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDD  149 (417)
T ss_dssp             STTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----C
T ss_pred             ccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchh
Confidence            45543 4333 55666666555443    35666666689996 5666788887     89997 999998863321  1


Q ss_pred             hcccCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccc
Q 022194          113 VTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (301)
Q Consensus       113 ~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~  183 (301)
                      .....+..+..++.+      |+++++  +.+++++|++++|+||||.+.+   +++|+++|++||+++|+||+|+....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~  227 (417)
T 3g7q_A          150 LFVSARPNIELLPEGQFKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFP  227 (417)
T ss_dssp             CEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTT
T ss_pred             hhccccCcccccCCcccccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccc
Confidence            223345566666543      777777  6778999999999999999987   88999999999999999999975321


Q ss_pred             c------CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc---c---HH
Q 022194          184 S------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---T---MA  251 (301)
Q Consensus       184 ~------~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~---~~  251 (301)
                      .      .+...+.++++.|+|| + +.+|++.|+++.+ +.+.+.+...........++..+.++...++   .   ..
T Consensus       228 ~~~~~~~~~~~~~~~i~~~s~sK-~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  304 (417)
T 3g7q_A          228 GIIFSEARPLWNPNIILCMSLSK-L-GLPGSRCGIIIAN-DKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSE  304 (417)
T ss_dssp             CCBCSCCCCCCCTTEEEEEESGG-G-TCTTSCCEEEECC-HHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccccccccCCCCCEEEEEechh-c-cCCCcceEEEEeC-HHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHH
Confidence            1      1223467899999999 5 5678899999886 4566666665555554445544444433322   1   11


Q ss_pred             H-HHHHHHHHHHHHHHHHHh
Q 022194          252 L-RVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       252 ~-~~~~~~~~~~~l~~~l~~  270 (301)
                      + .++.+.++.+.+.+.|++
T Consensus       305 ~~~~~~~~~~~~~~~~~l~~  324 (417)
T 3g7q_A          305 TVIKPFYYQRVQQTIAIIRR  324 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            2 345566777778888776

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.88  E-value=6e-22  Score=176.60  Aligned_cols=248  Identities=21%  Similarity=0.159  Sum_probs=162.5

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCcccc--CC--CCchHHHHH----HHHHhhcCCCce-EEecchHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYT--RS--GNPTRDALE----SLLAKLDKADRA-LCFTSGMA   81 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~--~~--g~~~~~~l~----~~l~~~~~~~~~-i~~~sG~~   81 (301)
                      ..+++|.++++++    +|.+.......  ........|.  .+  |.+..+.++    +++++++|.+.. +++++|++
T Consensus        23 ~~~i~~~~~~~~~----~~~v~~a~~~~--~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~   96 (407)
T 2dkj_A           23 REGLELIASENFV----SKQVREAVGSV--LTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQ   96 (407)
T ss_dssp             HTSEECCTTCCCC----CHHHHHHHTSG--GGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHH
T ss_pred             hcceeeccCCCCC----CHHHHHHHHhh--hhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHH
Confidence            4678887677766    44444332111  1111122332  22  555433333    589999998855 66789998


Q ss_pred             HHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc--EEEEecC------CCHHHHHhhcCC-CceEEEEeCCCCC
Q 022194           82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNT------CDLDEVASAIGP-WTKLVWVESPTNP  151 (301)
Q Consensus        82 ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~--~~~~~~~------~d~~~l~~~l~~-~~~~v~i~~~~np  151 (301)
                      |+. ++..++++||+|++++|.|+++.... ..+...|.  ....++.      .|++++++++++ ++++|++++|+||
T Consensus        97 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~  175 (407)
T 2dkj_A           97 ANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP  175 (407)
T ss_dssp             HHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC
T ss_pred             HHHHHHHHhcCCCCEEEEecccccCccchH-HHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccC
Confidence            885 55667899999999999998873111 22233333  4444431      278999999874 7899999889997


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-----CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHH
Q 022194          152 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (301)
Q Consensus       152 ~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~  226 (301)
                        ...++++|.++|+++|+++|+||+|+.|...     .... ..|+++.|+||+++|+   ++|+++++++.+.+.+..
T Consensus       176 --~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~---~~G~~~~~~~~~~~~l~~  249 (407)
T 2dkj_A          176 --RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTHKTLRGP---RGGLILSNDPELGKRIDK  249 (407)
T ss_dssp             --SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESSGGGCCC---SCEEEEESCHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEEEEeccccCCCC---CceEEEECCHHHHHHHHh
Confidence              6778999999999999999999999864321     1112 3799999999988654   469999885556665554


Q ss_pred             hhhhc-CCCCCHHhHHHHHccc-----ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          227 LQNAE-GSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       227 ~~~~~-~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..... ..+.++....++..++     +.+.+..++..++++++.+.|+++
T Consensus       250 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  300 (407)
T 2dkj_A          250 LIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR  300 (407)
T ss_dssp             HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            43222 2334443332322322     234667788888889999999876

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.88  E-value=4.1e-22  Score=177.09  Aligned_cols=217  Identities=17%  Similarity=0.144  Sum_probs=143.3

Q ss_pred             ccccCC-CC--chHHHHHHHHHhhcC-------CCceEEecch-HHHHH-HHHhccCCCC----eEEEcCCCCccHHHHH
Q 022194           47 YDYTRS-GN--PTRDALESLLAKLDK-------ADRALCFTSG-MAALA-AVTHLLGTGE----EIVAGDDLYGGTDRLL  110 (301)
Q Consensus        47 ~~y~~~-g~--~~~~~l~~~l~~~~~-------~~~~i~~~sG-~~ai~-~~~~~~~~g~----~Vlv~~~~y~~~~~~~  110 (301)
                      ..|.+. |.  ....++++.++++++       .++.+++++| ++++. ++..++++||    +|++++|.|..+.   
T Consensus        57 ~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~---  133 (391)
T 3bwn_A           57 SYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYV---  133 (391)
T ss_dssp             SSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHH---
T ss_pred             hcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHH---
Confidence            456554 54  011444444444443       2345666666 58886 5666789999    9999999999987   


Q ss_pred             hhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-ccCC
Q 022194          111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLEL  189 (301)
Q Consensus       111 ~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~~  189 (301)
                       ..++..|.+++.++.+ .+.++   .+++++|++++|+||||.+.+  +|++.++++++++|+||+|..+.... ....
T Consensus       134 -~~~~~~g~~~~~~~~d-~~~l~---~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~  206 (391)
T 3bwn_A          134 -EETTYVRSGMYKWEGD-AWGFD---KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITRRQ  206 (391)
T ss_dssp             -HHHHTTCBTTEEEEEE-STTCC---CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCCCB
T ss_pred             -HHHHHcCCeEEEecCC-HHHcC---CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCccccCC
Confidence             4445566666665543 22332   357899999999999999986  55542233349999999998532111 1134


Q ss_pred             CCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc--------------ccHHHHHH
Q 022194          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV--------------KTMALRVE  255 (301)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------~~~~~~~~  255 (301)
                      +.+++++||||++ |++|+|.|++++.++.+.+.+.........+.+...+.++...+              +.+.+.++
T Consensus       207 ~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~  285 (391)
T 3bwn_A          207 DHDIMLFTFSKIT-GHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGRE  285 (391)
T ss_dssp             CCSEEEEEHHHHH-SCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHH
T ss_pred             CCeEEEEechhhc-CCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHH
Confidence            6789999999999 67889999999855667676666555434455555444443333              23566677


Q ss_pred             HHHHHHHHHHHHHHhCCCc
Q 022194          256 KQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~v  274 (301)
                      .+.++++.+.+.|++++++
T Consensus       286 ~~~~~~~~l~~~L~~~~~~  304 (391)
T 3bwn_A          286 MMKNRWEKLREVVKESDAF  304 (391)
T ss_dssp             HHHHHHHHHHHHHHTCSSE
T ss_pred             HHHHHHHHHHHHHHhCCCc
Confidence            8888889999999987644

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.88  E-value=5.2e-21  Score=169.83  Aligned_cols=212  Identities=19%  Similarity=0.190  Sum_probs=160.8

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-------cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEec
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-------LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-------~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~  125 (301)
                      .+..+++++.++++++.++.+++++|++|+. ++..+       +++||+|+++.+.|+++...    +...|.+++.++
T Consensus        33 ~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~----~~~~g~~~~~~~  108 (390)
T 3b8x_A           33 GEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYP----LQQYGLRVKFVD  108 (390)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEEC
T ss_pred             ChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEe
Confidence            4568999999999999999999999998886 55666       67899999999999998744    345788888887


Q ss_pred             CC------CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCC--cEEEec
Q 022194          126 TC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA--DIVMHS  197 (301)
Q Consensus       126 ~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~--di~~~S  197 (301)
                      .+      |++++++++++++++|++++   ++|...++++|.++|+++|+++|+|++|+.+........+.  |+.+.|
T Consensus       109 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~~s  185 (390)
T 3b8x_A          109 IDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFS  185 (390)
T ss_dssp             BCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEEEE
T ss_pred             cCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEEEE
Confidence            64      78999999998899999873   57788999999999999999999999999776554444555  444443


Q ss_pred             c--cccccCCCCceeeEEEEcchhHHHHHHHhhhh-----------------------------cC--CCCCHHhHHHHH
Q 022194          198 A--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-----------------------------EG--SGLAPFDCWICL  244 (301)
Q Consensus       198 ~--sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~-----------------------------~~--~~~~~~~~~~~~  244 (301)
                      +  +|.+.++   .+|+++++++.+.+.+......                             .+  ..+++..+++.+
T Consensus       186 ~~~~k~~~~g---~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l  262 (390)
T 3b8x_A          186 SFYSNHIATM---EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGI  262 (390)
T ss_dssp             CCTTSSSCSS---SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHH
T ss_pred             ccCCCCCccC---CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHH
Confidence            2  3444332   3688888876665544432211                             01  115666666666


Q ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       245 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      ..++.+.+..++..++++++.+.|++++++.
T Consensus       263 ~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~  293 (390)
T 3b8x_A          263 EQLKKLPRFISVRRKNAEYFLDKFKDHPYLD  293 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            6677777888888999999999998877653

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.9e-22  Score=183.56  Aligned_cols=215  Identities=19%  Similarity=0.233  Sum_probs=157.0

Q ss_pred             HHHHHHHHHhhcCCC----ceEEecchHHHHH-HHHhccC-----CC---CeEEEcCCCCccHHHHHhhhcccCCcEEEE
Q 022194           57 RDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLG-----TG---EEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~----~~i~~~sG~~ai~-~~~~~~~-----~g---~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~  123 (301)
                      ++++.+++++++|.+    ..+++++|++|+. ++..+.+     +|   ++|+++.+.|.++.    ..+...|++++.
T Consensus       109 ~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~----~~~~~~G~~~~~  184 (497)
T 3mc6_A          109 ESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFD----KAAYYFGMKLRH  184 (497)
T ss_dssp             HHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHH----HHHHHSCCEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHH----HHHHHcCCeEEE
Confidence            667888899999876    4666777788885 4444433     45   89999999999886    555667889988


Q ss_pred             ecCC------CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccc-------------c
Q 022194          124 VNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-------------S  184 (301)
Q Consensus       124 ~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~-------------~  184 (301)
                      ++.+      |++++++++++++++|++++|+||+|.+.|+++|+++|+++|+++|+|++|+.+..             .
T Consensus       185 v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~  264 (497)
T 3mc6_A          185 VELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLL  264 (497)
T ss_dssp             ECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCC
T ss_pred             EecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccc
Confidence            8854      58899999999999999999999999999999999999999999999999984321             1


Q ss_pred             CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh-cCC-----C-CC------HHhHHHHHcccc--c
Q 022194          185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGS-----G-LA------PFDCWICLRGVK--T  249 (301)
Q Consensus       185 ~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~-~~~-----~-~~------~~~~~~~~~~l~--~  249 (301)
                      .....++|+++.|+||++.++.+  .|+++++++.+.......... .+.     . ..      ..++++++..+.  .
T Consensus       265 ~~~~~g~d~~~~s~~K~l~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~  342 (497)
T 3mc6_A          265 DFRVPGVTSISCDTHKYGFAPKG--SSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENG  342 (497)
T ss_dssp             STTSTTCCEEEEETTTTTCCCSS--CEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCcEEEECchhhcCCCCC--ceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHH
Confidence            23345789999999999866654  588888876553321111111 000     0 00      223444444432  3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCCcceE
Q 022194          250 MALRVEKQQDNAQKIAEFLAS-HPRVKKV  277 (301)
Q Consensus       250 ~~~~~~~~~~~~~~l~~~l~~-~~~v~~v  277 (301)
                      +.+..++..++++++.+.|++ .+++..+
T Consensus       343 ~~~~~~~~~~~~~~l~~~L~~~~~g~~~~  371 (497)
T 3mc6_A          343 YIESCQEIVGAAMKFKKYIQENIPDLDIM  371 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCTTCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            466778889999999999999 5776544

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.88  E-value=3e-21  Score=172.62  Aligned_cols=206  Identities=20%  Similarity=0.176  Sum_probs=139.5

Q ss_pred             HHHHHHHhhcCCCce-EEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhh-hcccCCcEEEEecC-----CCHH
Q 022194           59 ALESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR-VTPKTGVVVKRVNT-----CDLD  130 (301)
Q Consensus        59 ~l~~~l~~~~~~~~~-i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~-~~~~~g~~~~~~~~-----~d~~  130 (301)
                      .+++.++++++.+.. +++++|++++. ++..++++||+|++++|.|+++...... .....+..+..++.     .|++
T Consensus        75 ~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~  154 (417)
T 3n0l_A           75 LAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYE  154 (417)
T ss_dssp             HHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHH
T ss_pred             HHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHH
Confidence            445588899998754 78899998885 6677899999999999999876532111 11123445555554     3899


Q ss_pred             HHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccc-----cCccCCCCcEEEecccccccC
Q 022194          131 EVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       131 ~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~-----~~~~~~~~di~~~S~sK~~~g  204 (301)
                      +++++++ .++++|++++++|  |...++++|+++|++||+++|+|++|..+..     ..... +.|+++.|+||+++|
T Consensus       155 ~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g  231 (417)
T 3n0l_A          155 KVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTLRG  231 (417)
T ss_dssp             HHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTTCS
T ss_pred             HHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccccCC
Confidence            9999997 6899999888775  8899999999999999999999999865433     12222 479999999999965


Q ss_pred             CCCceeeEEEEcchhHHHHHHHhhhhcC-CCCCHHhHHHHHcc----c-ccHHHHHHHHHHHHHHHHHHHHh
Q 022194          205 HSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWICLRG----V-KTMALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----l-~~~~~~~~~~~~~~~~l~~~l~~  270 (301)
                      +   ++|+++++++.+.+.+........ .+.......+...+    . +.+.+..++..++++++.+.|++
T Consensus       232 ~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  300 (417)
T 3n0l_A          232 P---RGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD  300 (417)
T ss_dssp             C---SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C---CeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            4   579999886666666554433222 22333332222111    1 33567778888888999999987

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.87  E-value=7.9e-22  Score=171.59  Aligned_cols=198  Identities=9%  Similarity=0.065  Sum_probs=145.1

Q ss_pred             HHHHHHHHHhhcC---CC--ceEEecchHHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           57 RDALESLLAKLDK---AD--RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~---~~--~~i~~~sG~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ..++++.++++++   .+  +++++++|++++..+...+  ||+|+++ |.|+++.    ..++..|.+++.++.+    
T Consensus        58 ~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~--gd~Vl~~-p~y~~~~----~~~~~~g~~~~~v~~~~~~~  130 (335)
T 1uu1_A           58 DEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF--DRSVFFP-PTYSCYR----IFAKAVGAKFLEVPLTKDLR  130 (335)
T ss_dssp             CHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS--SEEEECS-SSCHHHH----HHHHHHTCEEEECCCCTTSC
T ss_pred             hHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh--CCcEEEC-CCcHHHH----HHHHHcCCeEEEeccCCCCC
Confidence            6778888888887   43  4455555579997665555  8999999 9999886    4445678888888764    


Q ss_pred             -CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccc----cCccCCCCcEEEecccccc
Q 022194          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL----SRPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 -d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~----~~~~~~~~di~~~S~sK~~  202 (301)
                       |++++     +++++|++++|+||||.+.+.+++.++++..| ++|+||+|+....    ......+.++++.|+||++
T Consensus       131 ~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  204 (335)
T 1uu1_A          131 IPEVNV-----GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAF  204 (335)
T ss_dssp             CCCCCC-----CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTT
T ss_pred             CCHHHc-----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhc
Confidence             33333     57899999999999999999999999999888 9999999974221    1112345789999999999


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                       |++|++.|+++++ +.+.+.+.....  .++.++..+.++...++.   +.+.++++.++++++.+.|+++
T Consensus       205 -g~~G~r~G~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  272 (335)
T 1uu1_A          205 -SLAAQRVGYVVAS-EKFIDAYNRVRL--PFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM  272 (335)
T ss_dssp             -TCGGGCCEEEEEC-HHHHHHHHHHSC--TTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcccCeEEEEeC-HHHHHHHHHhcC--CCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence             5578899999996 455565544332  245666666665555443   4566677888888888888875

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.87  E-value=7.5e-22  Score=179.32  Aligned_cols=213  Identities=9%  Similarity=0.051  Sum_probs=151.7

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhccCCCC---eEEEcCCCCccHHHHHhhhcccCCcEE-----EEe
Q 022194           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTGE---EIVAGDDLYGGTDRLLSRVTPKTGVVV-----KRV  124 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~~~g~---~Vlv~~~~y~~~~~~~~~~~~~~g~~~-----~~~  124 (301)
                      ..+++++++++++|.+  ++++++++++++. ++..++++++   +|+++.|.|++....+...++..|.++     ...
T Consensus       112 ~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~  191 (465)
T 3e9k_A          112 GDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIK  191 (465)
T ss_dssp             TTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEEC
T ss_pred             hHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEe
Confidence            3678999999999976  4455555578886 5566766655   499999999997766666666677663     223


Q ss_pred             cCC-----CHHHHHhhcC---CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCc-cCCCCcEEE
Q 022194          125 NTC-----DLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIVM  195 (301)
Q Consensus       125 ~~~-----d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~-~~~~~di~~  195 (301)
                      +.+     |+++++++++   +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+..... .+.++|+++
T Consensus       192 ~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~  271 (465)
T 3e9k_A          192 PREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFAC  271 (465)
T ss_dssp             CCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEE
T ss_pred             cCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEE
Confidence            322     7899999996   6789999999999999999999999999999999999999998876532 345799999


Q ss_pred             eccccccc-CCCCceeeEEEEcchhHHHHHHHhh-------------------------hhcCCCCCHHhHHHHHccccc
Q 022194          196 HSATKFIA-GHSDVMAGVLAVKGERLAKELYFLQ-------------------------NAEGSGLAPFDCWICLRGVKT  249 (301)
Q Consensus       196 ~S~sK~~~-g~~g~~~g~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~  249 (301)
                      .|++|++. ||.+  .|+++.+++.. +.+....                         .....+.+.....++..+++.
T Consensus       272 ~s~~K~l~~gp~~--~g~l~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~  348 (465)
T 3e9k_A          272 WCSYKYLNAGAGG--IAGAFIHEKHA-HTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEI  348 (465)
T ss_dssp             ECSSSTTCCCTTC--CCEEEECGGGT-TTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred             ECcccccccCCCc--eEEEEEcHHHH-hhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHH
Confidence            99999994 5543  47777765432 2111000                         000013344444444444433


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          250 -----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       250 -----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                           +.+.+++..++++++.+.|+++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~l~~~L~~~  375 (465)
T 3e9k_A          349 FKQATMKALRKKSVLLTGYLEYLIKHN  375 (465)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence                 4556677778888888888774

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.87  E-value=2.8e-21  Score=177.33  Aligned_cols=216  Identities=11%  Similarity=0.055  Sum_probs=156.3

Q ss_pred             HHHHHHHHHhhcCCC----ceEEecchHHHHH-HHHhccC--------------CCCeEEEcCCCCccHHHHHhhhcccC
Q 022194           57 RDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLG--------------TGEEIVAGDDLYGGTDRLLSRVTPKT  117 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~----~~i~~~sG~~ai~-~~~~~~~--------------~g~~Vlv~~~~y~~~~~~~~~~~~~~  117 (301)
                      .+++.+++++++|.+    ..+++++||+|+. ++..+..              +++.|+++++.|.++..    .++..
T Consensus       137 e~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~----~~~~~  212 (511)
T 3vp6_A          137 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKK----AGAAL  212 (511)
T ss_dssp             HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHH----HHHHT
T ss_pred             HHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHH----HHHHc
Confidence            566777889999876    4667788887764 4444332              56789999999998874    44445


Q ss_pred             Cc---EEEEecCC-----CHHHHHhhcCCC------ceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccc
Q 022194          118 GV---VVKRVNTC-----DLDEVASAIGPW------TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL  183 (301)
Q Consensus       118 g~---~~~~~~~~-----d~~~l~~~l~~~------~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~  183 (301)
                      |+   .++.++.+     |+++|++++.+.      +++|++++++|++|.+.|+++|+++|++||+|+++|++|+.+..
T Consensus       213 g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~  292 (511)
T 3vp6_A          213 GFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLL  292 (511)
T ss_dssp             TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred             CCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHh
Confidence            55   77777765     899999998744      88999999999999999999999999999999999999998765


Q ss_pred             cCc-------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhc---------------------CCCC
Q 022194          184 SRP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE---------------------GSGL  235 (301)
Q Consensus       184 ~~~-------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~---------------------~~~~  235 (301)
                      ..+       ...++|+++.++||++++|.+  .|+++.+++.+.+........+                     +...
T Consensus       293 ~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~  370 (511)
T 3vp6_A          293 MSRKHRHKLNGIERANSVTWNPHKMMGVLLQ--CSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHV  370 (511)
T ss_dssp             GCTTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCC
T ss_pred             hChhhhhhccCCccCCEEEECcccccCCCcC--eEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCch
Confidence            322       112569999999999988765  4777777765544322110000                     0011


Q ss_pred             CHHhHHHHHcc--cccHHHHHHHHHHHHHHHHHHHHhCCCcceEe
Q 022194          236 APFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKVN  278 (301)
Q Consensus       236 ~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~  278 (301)
                      .....++++..  .+.+.+++++..++++++.+.|++.|+++.+.
T Consensus       371 ~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~  415 (511)
T 3vp6_A          371 DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVF  415 (511)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESS
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            23334444433  34567888999999999999999888765443

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.87  E-value=3.5e-22  Score=180.14  Aligned_cols=252  Identities=13%  Similarity=0.034  Sum_probs=159.3

Q ss_pred             ceeeecCCCCCC---CCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc--CC-CceEEecchHHHHH
Q 022194           11 TLLMNFSNEFDP---YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD--KA-DRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~---~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~--~~-~~~i~~~sG~~ai~   84 (301)
                      ..++||+ ++.+   +|. .+|.+.........  ....+.+..+..+.+.++++++++++  +. +++++++||++|+.
T Consensus        43 ~~~lD~~-~~~~~~~lG~-~~p~v~~a~~~~~~--~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~  118 (439)
T 3dxv_A           43 RELIDLS-GAWGAASLGY-GHPAIVAAVSAAAA--NPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANE  118 (439)
T ss_dssp             CEEEESS-TTTTTCTTCB-SCHHHHHHHHHHHH--SCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHH
T ss_pred             CEEEECC-CchhhccCCC-CCHHHHHHHHHHHH--hccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHH
Confidence            4689999 6776   887 45555544322211  11222222222345899999999998  55 57888888899986


Q ss_pred             HHHhc---cCCCCeEEEcCCCCccHHHHHhhhcccCC-----------cEEEEecCC----------CHHHHHhhc----
Q 022194           85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTG-----------VVVKRVNTC----------DLDEVASAI----  136 (301)
Q Consensus        85 ~~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g-----------~~~~~~~~~----------d~~~l~~~l----  136 (301)
                      .++.+   ..++++|++.++.||+.............           ..+..++..          |++++++++    
T Consensus       119 ~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~  198 (439)
T 3dxv_A          119 AAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVP  198 (439)
T ss_dssp             HHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcC
Confidence            44433   34678899999999877533211111100           012233333          589999998    


Q ss_pred             CCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccc-cC---ccCCCCcEEEecccccccCCCCc
Q 022194          137 GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVL-SR---PLELGADIVMHSATKFIAGHSDV  208 (301)
Q Consensus       137 ~~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~-~~---~~~~~~di~~~S~sK~~~g~~g~  208 (301)
                      .+++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+.... ..   ....+....+.|+||+++ + |+
T Consensus       199 ~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~-~-G~  276 (439)
T 3dxv_A          199 AGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLG-G-GL  276 (439)
T ss_dssp             TTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGG-T-TS
T ss_pred             CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhc-C-Cc
Confidence            567889999999999999987    99999999999999999999973211 11   112233233348999996 3 77


Q ss_pred             eeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHh
Q 022194          209 MAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       209 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~  270 (301)
                      +.|++++++ .+.+.+.......+. .++..++++..+++.+  .+..+++.++.+++++.|++
T Consensus       277 riG~~~~~~-~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~  338 (439)
T 3dxv_A          277 PLSAVIAPA-EILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSE  338 (439)
T ss_dssp             CCEEEEEEH-HHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECH-HHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            899999874 444433332233344 6777776666666543  23445666666666666654

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.87  E-value=2.7e-21  Score=172.96  Aligned_cols=213  Identities=15%  Similarity=0.130  Sum_probs=149.8

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhcc------CCCCeEE-EcCCCCccHHHHHhhhcccC--CcEEE
Q 022194           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL------GTGEEIV-AGDDLYGGTDRLLSRVTPKT--GVVVK  122 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~------~~g~~Vl-v~~~~y~~~~~~~~~~~~~~--g~~~~  122 (301)
                      +..+++++++++++|.+  +++++++|++++. ++..++      ++||+|+ ++.+.|+++...+....+..  |.+++
T Consensus        71 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~  150 (416)
T 1qz9_A           71 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR  150 (416)
T ss_dssp             GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEE
Confidence            44789999999999975  4555566678885 555554      8898755 54556665554443333333  88899


Q ss_pred             EecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-ccCCCCcEEEeccccc
Q 022194          123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF  201 (301)
Q Consensus       123 ~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~S~sK~  201 (301)
                      .++.  ++++++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.... ....+.|+++.|+||+
T Consensus       151 ~v~~--~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~  228 (416)
T 1qz9_A          151 LVDS--PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKY  228 (416)
T ss_dssp             EESS--GGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSST
T ss_pred             EeCc--HHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCccc
Confidence            9887  889999998899999999999999999999999999999999999999998765432 2234689999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhh-----------------------hhcCCCCCHHhHHHHHccc-----ccHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQ-----------------------NAEGSGLAPFDCWICLRGV-----KTMALR  253 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l-----~~~~~~  253 (301)
                      ++++.++ .|+++.+++. .+.+....                       .....+.+.....++..++     ..+.+.
T Consensus       229 l~~g~~~-~g~l~~~~~~-~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~  306 (416)
T 1qz9_A          229 LNGGPGS-QAFVWVSPQL-CDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASL  306 (416)
T ss_dssp             TCCCTTC-CCEEEECTTT-TTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CCCCCCC-eEEEEECHHH-HhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence            8554442 2888887653 22222110                       1111233444333332222     235667


Q ss_pred             HHHHHHHHHHHHHHHHhC
Q 022194          254 VEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~  271 (301)
                      .++..++++++.+.|+++
T Consensus       307 ~~~~~~~~~~l~~~L~~~  324 (416)
T 1qz9_A          307 RRKSLALTDLFIELVEQR  324 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            788888888999998875

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.87  E-value=1e-20  Score=165.46  Aligned_cols=213  Identities=17%  Similarity=0.137  Sum_probs=148.0

Q ss_pred             chHHHHHHHHHhhcCCCc-eEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhh--cccC--CcEEEEecCC-
Q 022194           55 PTRDALESLLAKLDKADR-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRV--TPKT--GVVVKRVNTC-  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~-~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~--~~~~--g~~~~~~~~~-  127 (301)
                      +.++++++++++++|.+. ++++++|++++. ++..++++||+|++++|.|..+.    ..  +...  |.+++.++.+ 
T Consensus        43 ~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~----~~~~~~~~~~g~~~~~v~~~~  118 (356)
T 1v72_A           43 ELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINND----ECGAPEFFSNGAKLMTVDGPA  118 (356)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHS----STTHHHHHTTSCEEEECCCGG
T ss_pred             hHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhh----hchHHHHHhCCcEEEEecCCC
Confidence            458999999999998654 577788898885 66667889999999999887653    22  3344  7888888865 


Q ss_pred             ---CHHHHHh-hcCC-------CceEEEEeCCCCCcccc---ccHHHHHHHHHHcCCEEEEeCCcCCccc---c-CccC-
Q 022194          128 ---DLDEVAS-AIGP-------WTKLVWVESPTNPRQQI---CDIRKIAEMAHAHGALLLVDNSIMSPVL---S-RPLE-  188 (301)
Q Consensus       128 ---d~~~l~~-~l~~-------~~~~v~i~~~~np~G~~---~~l~~l~~l~~~~~~~li~D~~~~~~~~---~-~~~~-  188 (301)
                         |++++++ ++++       ++++|++++|+| ||.+   .++++|+++|++||+++|+|++|..+..   . .+.. 
T Consensus       119 ~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~  197 (356)
T 1v72_A          119 AKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEM  197 (356)
T ss_dssp             GCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTT
T ss_pred             CeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHh
Confidence               7999999 8875       689999999886 9995   4589999999999999999999864211   1 1111 


Q ss_pred             ---CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCC--CHHhHHHHHccccc--HHHHHHHHHHHH
Q 022194          189 ---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKT--MALRVEKQQDNA  261 (301)
Q Consensus       189 ---~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~--~~~~~~~~~~~~  261 (301)
                         .+.|+++.|+||+ ++|.|  .|+++++ +.+.+.+.......+...  ...........++.  +.+..++..+++
T Consensus       198 ~~~~~~d~~~~s~sK~-g~~~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  273 (356)
T 1v72_A          198 TWKAGVDALSFGATKN-GVLAA--EAIVLFN-TSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAA  273 (356)
T ss_dssp             TGGGTCCEEEECCGGG-TCSSC--EEEEESS-GGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred             hhhhcCCEEEEecccC-CCcCc--cEEEEEC-HHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence               3678899999999 45422  2577765 455555444333223211  22222222333322  334566777888


Q ss_pred             HHHHHHHHhCCCcce
Q 022194          262 QKIAEFLASHPRVKK  276 (301)
Q Consensus       262 ~~l~~~l~~~~~v~~  276 (301)
                      +++.+.|++++++..
T Consensus       274 ~~l~~~L~~~~g~~~  288 (356)
T 1v72_A          274 QRLAQGLEGLGGVEV  288 (356)
T ss_dssp             HHHHHHHTTCTTEEE
T ss_pred             HHHHHHHhhCCCcEE
Confidence            889999988777643

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.87  E-value=2.1e-21  Score=174.06  Aligned_cols=254  Identities=13%  Similarity=0.046  Sum_probs=158.8

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC---ceEEecchHHHHHH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD---RALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~---~~i~~~sG~~ai~~   85 (301)
                      ..++||.++.  .++|...+|.+........+  ....+....+..+...++++.+++.++.+   ++++++||++|+..
T Consensus        42 ~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~--~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~  119 (419)
T 2eo5_A           42 NKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQ--KLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEA  119 (419)
T ss_dssp             CEEEESSGGGGTTTTCBSCCHHHHHHHHHHHT--TSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHH
T ss_pred             CEEEEccCChhhhccCCCCCHHHHHHHHHHHh--hCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHH
Confidence            3688997333  37887745555544322211  11111112233455889999999999853   56666777899864


Q ss_pred             HHh-ccC-CCCeEEEcCCCCccHHHHHhhhc----------ccCCcEEEEecCC---------------------CHHHH
Q 022194           86 VTH-LLG-TGEEIVAGDDLYGGTDRLLSRVT----------PKTGVVVKRVNTC---------------------DLDEV  132 (301)
Q Consensus        86 ~~~-~~~-~g~~Vlv~~~~y~~~~~~~~~~~----------~~~g~~~~~~~~~---------------------d~~~l  132 (301)
                      ++. +.. +||+|++++|.||+.........          ......++.++.+                     |++++
T Consensus       120 ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l  199 (419)
T 2eo5_A          120 SIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFI  199 (419)
T ss_dssp             HHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHH
Confidence            443 322 38999999999987643322111          1112244555432                     25788


Q ss_pred             H-hhcC-----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-ccccC---ccCCCCcEEEecc
Q 022194          133 A-SAIG-----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR---PLELGADIVMHSA  198 (301)
Q Consensus       133 ~-~~l~-----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~~---~~~~~~di~~~S~  198 (301)
                      + ++++     +++++|+++..+|++|...+    +++|+++|++||+++|+||+|.. +..+.   ....+....+.|+
T Consensus       200 ~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~  279 (419)
T 2eo5_A          200 EDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITL  279 (419)
T ss_dssp             HHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE
T ss_pred             HHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEe
Confidence            8 8776     35566666555567897665    99999999999999999999973 22211   1111222224479


Q ss_pred             cccccCCCC-ceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          199 TKFIAGHSD-VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       199 sK~~~g~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ||++++  | ++.|+++++++..  .+ ......+...++..+.++..+++.+.+..+++.++.+++.+.|++.
T Consensus       280 sK~~~~--G~~riG~~~~~~~~~--~~-~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~  348 (419)
T 2eo5_A          280 AKALGG--GIMPIGATIFRKDLD--FK-PGMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGL  348 (419)
T ss_dssp             CGGGGT--TTSCCEEEEEEGGGC--CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cccccC--CccceEEEEEchHhh--cC-CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999963  7 7899999886543  33 2123334556777777777777766556777888888899988775

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.87  E-value=2.1e-21  Score=170.28  Aligned_cols=218  Identities=20%  Similarity=0.135  Sum_probs=147.5

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCe-EEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEE-IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~-Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+...+++++++++++.+..+++++|++|+. ++..++.+||+ |++..+.++.+...........|.+++.++.+    
T Consensus        47 ~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  126 (359)
T 3pj0_A           47 GAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTANQLL  126 (359)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCTTSCC
T ss_pred             CHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhcCceEEecCCcCCCc
Confidence            3558999999999999998888899998875 66667778876 44434433332210001113358888888764    


Q ss_pred             CHHHHHhhcCCCceEEEEeCCCCCc-ccccc---HHHHHHHHHHcCCEEEEeCCcCCccc---c---CccCCCCcEEEec
Q 022194          128 DLDEVASAIGPWTKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMSPVL---S---RPLELGADIVMHS  197 (301)
Q Consensus       128 d~~~l~~~l~~~~~~v~i~~~~np~-G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~---~---~~~~~~~di~~~S  197 (301)
                      |+++++++ .+++++|++++|+||+ |.+.+   +++|+++|++||+++|+|++|..+..   .   .....+.|+++.|
T Consensus       127 d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s  205 (359)
T 3pj0_A          127 TIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVS  205 (359)
T ss_dssp             CHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEE
T ss_pred             CHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEe
Confidence            88999988 7789999999999998 68776   55559999999999999999764431   1   1112467899999


Q ss_pred             ccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCC--CCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       198 ~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      +||+++++.   +|+++.+ +.+.+.+.......+..  .....+.+....++...++.++..++++++.+.|++++++.
T Consensus       206 ~sK~~~~~~---gg~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~  281 (359)
T 3pj0_A          206 FYKGIGGIA---GAILAGN-DDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSCSGVK  281 (359)
T ss_dssp             SSSTTCCSS---CEEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             ccccCCCcc---eEEEECC-HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCce
Confidence            999997653   3666655 55666665544333322  12222222223333333455667788889999999987764


Q ss_pred             e
Q 022194          276 K  276 (301)
Q Consensus       276 ~  276 (301)
                      .
T Consensus       282 ~  282 (359)
T 3pj0_A          282 T  282 (359)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.86  E-value=2.6e-21  Score=173.95  Aligned_cols=253  Identities=13%  Similarity=0.088  Sum_probs=158.4

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      ..++||.++.  .++|.. +|.+........+  ....+.++.+..+...++++.+++.++  .+++++++||++|+.++
T Consensus        43 ~~ylD~~~~~~~~~lg~~-~p~v~~a~~~~~~--~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~a  119 (429)
T 1s0a_A           43 RRLVDGMSSWWAAIHGYN-HPQLNAAMKSQID--AMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA  119 (429)
T ss_dssp             CEEEESSTTTTTCTTCBS-CHHHHHHHHHHHH--HCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHH
T ss_pred             CEEEEcCccHhhccCCCC-CHHHHHHHHHHHH--hcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHH
Confidence            3688987443  578864 4544433222111  001111112234557889999999984  45677778889998644


Q ss_pred             Hh-c---cC----CCCeEEEcCCCCccHHHHHhhhcc------------cCCcEEEEecC---------CCHHHHHhhcC
Q 022194           87 TH-L---LG----TGEEIVAGDDLYGGTDRLLSRVTP------------KTGVVVKRVNT---------CDLDEVASAIG  137 (301)
Q Consensus        87 ~~-~---~~----~g~~Vlv~~~~y~~~~~~~~~~~~------------~~g~~~~~~~~---------~d~~~l~~~l~  137 (301)
                      +. +   .+    |||+|++.+|.||++.........            ..++....++.         .|+++++++++
T Consensus       120 i~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  199 (429)
T 1s0a_A          120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA  199 (429)
T ss_dssp             HHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHH
Confidence            33 2   22    689999999999986432211111            11345555442         36888988886


Q ss_pred             ---CCceEEEEeCC-CCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-ccccC---cc--CCCCcEEEeccccccc
Q 022194          138 ---PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR---PL--ELGADIVMHSATKFIA  203 (301)
Q Consensus       138 ---~~~~~v~i~~~-~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~~---~~--~~~~di~~~S~sK~~~  203 (301)
                         +++++|+++.+ +||+|.+.+    +++|+++|++||+++|+||+|+. +..+.   ..  ....|++  |+||+++
T Consensus       200 ~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~  277 (429)
T 1s0a_A          200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALT  277 (429)
T ss_dssp             HHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG
T ss_pred             hCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--Eeccccc
Confidence               46677777766 799998776    99999999999999999999973 22111   11  2234544  7899996


Q ss_pred             CCCC-ceeeEEEEcchhHHHHHHHhh-----hhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHhC
Q 022194          204 GHSD-VMAGVLAVKGERLAKELYFLQ-----NAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       204 g~~g-~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +  | ++.|++++++ .+.+.+....     ...+...++..+.++..+++.+  .+..++..++.+++.+.|++.
T Consensus       278 ~--G~~~iG~~~~~~-~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l  350 (429)
T 1s0a_A          278 G--GTMTLSATLTTR-EVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPA  350 (429)
T ss_dssp             T--SSSCCEEEEECH-HHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGG
T ss_pred             C--CCccceEEEeCH-HHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            4  5 6789999875 4555444321     1123445666666666665543  234567777788888888764

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.86  E-value=1.9e-20  Score=177.07  Aligned_cols=214  Identities=14%  Similarity=0.029  Sum_probs=155.1

Q ss_pred             hHHHHHHHHHhhcCCCceEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-------
Q 022194           56 TRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------  126 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~~~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-------  126 (301)
                      ...++++.+++++|.+..+++++|+ +++. ++.+++++||+|+++.+.|.++...   .+...|+++++++.       
T Consensus       174 ~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~---~~~l~Ga~~v~v~~~~~~~~i  250 (730)
T 1c4k_A          174 PAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS---ALAMAGGRPVYLQTNRNPYGF  250 (730)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH---HTTTTCCEEEEECEEECTTCC
T ss_pred             HHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH---HHHHCCCEEEEEeCCccccCc
Confidence            4899999999999999888888886 7774 7778899999999999999888632   25667888887763       


Q ss_pred             ---CCHHHH-----HhhcCCC------c----eEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc----
Q 022194          127 ---CDLDEV-----ASAIGPW------T----KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (301)
Q Consensus       127 ---~d~~~l-----~~~l~~~------~----~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~----  184 (301)
                         .|++++     +++++++      +    ++|++++| |++|.+.|+++|+++|+++|+++++|++|+.+...    
T Consensus       251 ~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~  329 (730)
T 1c4k_A          251 IGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMM  329 (730)
T ss_dssp             EEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGG
T ss_pred             cCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCccc
Confidence               167777     8888765      4    89999998 58999999999999999999999999999753211    


Q ss_pred             ---CccC---CCCc----EEEecccccccCCCCceeeEEEEcchhH--------HHHHHHhhhhc-CCCCCHHhHHHHHc
Q 022194          185 ---RPLE---LGAD----IVMHSATKFIAGHSDVMAGVLAVKGERL--------AKELYFLQNAE-GSGLAPFDCWICLR  245 (301)
Q Consensus       185 ---~~~~---~~~d----i~~~S~sK~~~g~~g~~~g~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~  245 (301)
                         .+..   .++|    +++.|+||+++|+.+  +|+++.+++.+        ...+....... ..+.+....+.+..
T Consensus       330 ~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~--gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaal~a  407 (730)
T 1c4k_A          330 RNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQ--TSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDV  407 (730)
T ss_dssp             GGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTT--CEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             CCcCcccccccCCCCCCEEEEECCCCCCCCCCC--EEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHHHHH
Confidence               1222   2677    999999999977653  57776665443        12222222222 23334333333222


Q ss_pred             ccc-----cHHHHHHHHHHHHHHHHHHHHh-CCCcc
Q 022194          246 GVK-----TMALRVEKQQDNAQKIAEFLAS-HPRVK  275 (301)
Q Consensus       246 ~l~-----~~~~~~~~~~~~~~~l~~~l~~-~~~v~  275 (301)
                      +++     .-.+++++..++++++++.|++ .+++.
T Consensus       408 A~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~  443 (730)
T 1c4k_A          408 NAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFR  443 (730)
T ss_dssp             HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeE
Confidence            222     2355678888999999999988 67664

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.86  E-value=1.1e-20  Score=167.24  Aligned_cols=210  Identities=16%  Similarity=0.189  Sum_probs=152.2

Q ss_pred             hHHHHHHHHHhhcCCCceEEe-cchHHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC--cEEEEec-------
Q 022194           56 TRDALESLLAKLDKADRALCF-TSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVN-------  125 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~~~i~~-~sG~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g--~~~~~~~-------  125 (301)
                      .++++++.++++++.++.+++ +|||+|+.+++.++++||+|++.++.|++..  +...++..|  .+++.++       
T Consensus        36 ~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~g~~  113 (379)
T 3ke3_A           36 VMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQLTIDEDCLIIRNGWFSYR--WTQILEKGKFAKSSTVLTAERTEDT  113 (379)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHHHCTTCEEEEEECSHHHHH--HHHHHHHHCCSSEEEEEECEESSCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHhCCCCCeEEEEeCCchhHH--HHHHHHHhCCCCceEEEeccccccc
Confidence            377888999999998765655 5778998766677889999999999998753  223333333  3555443       


Q ss_pred             -------CCCHHHHHhhcC-CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcE
Q 022194          126 -------TCDLDEVASAIG-PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADI  193 (301)
Q Consensus       126 -------~~d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di  193 (301)
                             ..|+++++++++ .++++|++++++|++|.+.|   +++|+++|+++|+++|+|++++ +... .....++|+
T Consensus       114 ~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~~~d~  192 (379)
T 3ke3_A          114 EAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKELGIDV  192 (379)
T ss_dssp             SSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHHTCSE
T ss_pred             cccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccccccCCCE
Confidence                   248899999885 47899999999999999999   9999999999999999999998 6432 333458999


Q ss_pred             EEecccccccCCCCceeeEEEEcchhHHHHHHHhh-------------------hh---cCCCCCHHhHHHHHccccc--
Q 022194          194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-------------------NA---EGSGLAPFDCWICLRGVKT--  249 (301)
Q Consensus       194 ~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~~~~~~~l~~--  249 (301)
                      ++.|+||++++|+|  .|+++.+++ +.+.+....                   ..   +..+.+....+++..+++.  
T Consensus       193 ~~~s~~K~l~~~~g--~g~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~  269 (379)
T 3ke3_A          193 LISAPQKGWSSTPC--AGLVMLSAA-AIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAK  269 (379)
T ss_dssp             EEECTTTTTCSCCC--EEEEEECHH-HHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             EEecchhhcCCCCc--eEEEEECHH-HHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999988776  588888754 333332100                   00   1124455555554444443  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHhC
Q 022194          250 ---MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       250 ---~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                         +.+..++..++++++++.|+++
T Consensus       270 ~~g~~~~~~~~~~l~~~l~~~l~~~  294 (379)
T 3ke3_A          270 EIGFDILRDAQWELGNRVRKVLTDK  294 (379)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHc
Confidence               3456677778888888888875

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.86  E-value=5.2e-21  Score=167.46  Aligned_cols=247  Identities=15%  Similarity=0.078  Sum_probs=162.2

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCC-chHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT   87 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~-~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~   87 (301)
                      .+++|+ . ++.|. .+|.+.........     .|.... |. +.++++++++++++|.+  ++++++||++++. ++.
T Consensus        14 ~~i~l~-~-~~~~~-~~~~v~~a~~~~~~-----~~~~~~-g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~   84 (359)
T 1svv_A           14 KPYSFV-N-DYSVG-MHPKILDLMARDNM-----TQHAGY-GQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACS   84 (359)
T ss_dssp             -CEECS-C-SCSSC-CCHHHHHHHHHHTT-----CCCCST-TCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHH
T ss_pred             eeEEec-C-CCcCC-CCHHHHHHHHHHHh-----hccccc-cccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHH
Confidence            467887 3 66663 34444433222111     122222 44 44999999999999865  4566677789986 666


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----CHHHHHhhcCCC-------ceEEEEeCCCCCccccc
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPW-------TKLVWVESPTNPRQQIC  156 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~-------~~~v~i~~~~np~G~~~  156 (301)
                      .++++||+|++++|.|+++...  ..++..|.+++.++.+    |++++++.++++       +++|++++| ||||.+.
T Consensus        85 ~~~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~  161 (359)
T 1svv_A           85 LALRPWEAVIATQLGHISTHET--GAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQY  161 (359)
T ss_dssp             HHCCTTEEEEEETTSHHHHSST--THHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCC
T ss_pred             HHhCCCCEEEEcccchHHHHHH--HHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceec
Confidence            6788999999999999988521  0355678888888865    589999988754       899999998 7899998


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCc---CCccccCccC-----CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHH
Q 022194          157 D---IRKIAEMAHAHGALLLVDNSI---MSPVLSRPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (301)
Q Consensus       157 ~---l~~l~~l~~~~~~~li~D~~~---~~~~~~~~~~-----~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~  225 (301)
                      +   +++|+++|+++|+++|+||+|   ..+.......     ...|+++.|++|+ +++.+  .|+++.+++ +.+.+.
T Consensus       162 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~--~g~l~~~~~-~~~~~~  237 (359)
T 1svv_A          162 TKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFG--EALIILNDA-LKPNAR  237 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSC--EEEEECSGG-GCTTHH
T ss_pred             CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCc--eEEEEEccc-HHHHHH
Confidence            7   899999999999999999998   3233221111     3578999999997 45543  488887654 333333


Q ss_pred             HhhhhcCC--CCCHHhHHHHHcccc--cHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          226 FLQNAEGS--GLAPFDCWICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       226 ~~~~~~~~--~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      ......+.  ..+......+...++  .+.+.++++.++++++.+.| +.+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~  290 (359)
T 1svv_A          238 HLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EACGIR  290 (359)
T ss_dssp             HHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCC
T ss_pred             HHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeE
Confidence            32211222  112122122222222  34566778888888899988 455553

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.86  E-value=8.4e-21  Score=170.65  Aligned_cols=212  Identities=17%  Similarity=0.122  Sum_probs=139.7

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHHH-HHhcc--------CCCCeEEEcCCCCccH-------------HHHHhh
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALAA-VTHLL--------GTGEEIVAGDDLYGGT-------------DRLLSR  112 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~~-~~~~~--------~~g~~Vlv~~~~y~~~-------------~~~~~~  112 (301)
                      .+++++++++++|.+  +++++++|++++.+ +..++        ++||+|++..|.|+.+             ...+..
T Consensus        63 ~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~  142 (432)
T 3a9z_A           63 INTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEH  142 (432)
T ss_dssp             HHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHH
Confidence            579999999999875  45555555798864 44443        4898888888888654             222334


Q ss_pred             hcccCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcC----------CEEEEeC
Q 022194          113 VTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG----------ALLLVDN  176 (301)
Q Consensus       113 ~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~----------~~li~D~  176 (301)
                      ..+..|.+++.++.+      |++++++++++++++|++++|+||||.+.|+++|.++|+++|          +++|+|+
T Consensus       143 ~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDe  222 (432)
T 3a9z_A          143 LVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDA  222 (432)
T ss_dssp             HHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEEC
T ss_pred             HHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEc
Confidence            455678888888863      789999999988999999999999999999999999999999          9999999


Q ss_pred             CcCCcccc-CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh-------hhhcCCCCCHHhHHHHHcccc
Q 022194          177 SIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVK  248 (301)
Q Consensus       177 ~~~~~~~~-~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~  248 (301)
                      +|+.+... .....+.|+++.|+||++ |+   +.|+++++++.....+...       ......+.+....+++..+++
T Consensus       223 a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~  298 (432)
T 3a9z_A          223 AQALGKRRVDVEDLGVDFLTIVGHKFY-GP---RIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAD  298 (432)
T ss_dssp             TTTTTTSCCCHHHHCCSEEEEEGGGTT-CC---SCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHH
T ss_pred             hhhhCCcccChhhcCCCEEEEehhHhc-CC---cceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHH
Confidence            99876543 222346899999999987 54   3799998865411111110       111223344444444433433


Q ss_pred             c----HHHHHHHHHHHHHHHHHHHHhCC
Q 022194          249 T----MALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       249 ~----~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      .    +.+..++..++++++.+.|++++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~  326 (432)
T 3a9z_A          299 LVSENCETYEAHMRDIRDYLEERLEAEF  326 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3    34555667777788888887643

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.86  E-value=5.2e-21  Score=173.16  Aligned_cols=252  Identities=15%  Similarity=0.101  Sum_probs=159.1

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecchHHHHHH-H
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGMAALAA-V   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~~ai~~-~   86 (301)
                      .+++||.++  +.++|..+ |.+......+.+   ...+....+..+.+.++++++++.++.+ ++++++||++|+.. +
T Consensus        49 ~~~lD~~~~~~~~~lG~~~-p~v~~A~~~~~~---~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al  124 (452)
T 3n5m_A           49 KRYLDGMSGLWCVNSGYGR-KELAEAAYKQLQ---TLSYFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAF  124 (452)
T ss_dssp             CEEEETTHHHHTCTTCBCC-HHHHHHHHHHHT---TCCCCCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHH
T ss_pred             CEEEECCcchhhccCCCCC-HHHHHHHHHHHH---hcCCcccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHH
Confidence            468999843  38899864 444433222211   1111111112345899999999998654 46677888999864 4


Q ss_pred             Hhcc-----C---CCCeEEEcCCCCccHHHHHhhhc---------ccCCcEEEEecC--------CC---------HHHH
Q 022194           87 THLL-----G---TGEEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNT--------CD---------LDEV  132 (301)
Q Consensus        87 ~~~~-----~---~g~~Vlv~~~~y~~~~~~~~~~~---------~~~g~~~~~~~~--------~d---------~~~l  132 (301)
                      ..+.     +   ++++|++.++.||++........         ......+..++.        .|         ++++
T Consensus       125 ~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  204 (452)
T 3n5m_A          125 KIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEV  204 (452)
T ss_dssp             HHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHH
Confidence            4433     4   78999999999998753321111         111112333332        23         8899


Q ss_pred             HhhcC----CCceEEEEeCC-CCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCCCCcEEEeccc
Q 022194          133 ASAIG----PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELGADIVMHSAT  199 (301)
Q Consensus       133 ~~~l~----~~~~~v~i~~~-~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~~~di~~~S~s  199 (301)
                      +++++    +++++|+++.+ +| +|.+.+    +++|+++|++||+++|+||+|... ..+   .....+....+.++|
T Consensus       205 e~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~s  283 (452)
T 3n5m_A          205 DRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMA  283 (452)
T ss_dssp             HHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC
T ss_pred             HHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeec
Confidence            98886    56788888888 89 998875    999999999999999999998732 211   122234444455689


Q ss_pred             ccccCCCC-ceeeEEEEcchhHHHHHHH------hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          200 KFIAGHSD-VMAGVLAVKGERLAKELYF------LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       200 K~~~g~~g-~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      |++++  | ++.|++++++ .+.+.+..      .....+...++..+++++.+++.+.  +..++..++.+++++.|++
T Consensus       284 K~l~~--G~~~ig~~~~~~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  360 (452)
T 3n5m_A          284 KGITS--AYLPLSATAVKR-EIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKE  360 (452)
T ss_dssp             GGGGT--TSSCCEEEEEEH-HHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccC--CCcceEEEEECH-HHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            99954  6 7889998874 45453321      1122345567777777777766542  3345666666666666654

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.85  E-value=9.8e-21  Score=171.36  Aligned_cols=214  Identities=12%  Similarity=-0.024  Sum_probs=153.2

Q ss_pred             HHHHHHHHHhhcCCCc-------eEEecchHHHHH-HHHhccC--------CC-----CeEEEcCCCCccHHHHHhhhcc
Q 022194           57 RDALESLLAKLDKADR-------ALCFTSGMAALA-AVTHLLG--------TG-----EEIVAGDDLYGGTDRLLSRVTP  115 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~-------~i~~~sG~~ai~-~~~~~~~--------~g-----~~Vlv~~~~y~~~~~~~~~~~~  115 (301)
                      .+++++++++++|.+.       .+++++|++|+. ++.++..        +|     ++|++++ .|..+.    ..+.
T Consensus        83 ~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~----~~~~  157 (452)
T 2dgk_A           83 DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWH----KFAR  157 (452)
T ss_dssp             HHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHH----HHHH
T ss_pred             HHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHH----HHHH
Confidence            6778888999998762       567777788875 4444432        44     5899998 777665    5566


Q ss_pred             cCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc------CCEEEEeCCcCCccc
Q 022194          116 KTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH------GALLLVDNSIMSPVL  183 (301)
Q Consensus       116 ~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~------~~~li~D~~~~~~~~  183 (301)
                      ..|++++.++.+      |++++++++++++++|++++|+||||.+.|+++|+++|+++      |+++++|++|+.+..
T Consensus       158 ~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~  237 (452)
T 2dgk_A          158 YWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLA  237 (452)
T ss_dssp             HTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH
T ss_pred             HcCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHH
Confidence            778999999864      79999999998999999999999999999999999999995      999999999987643


Q ss_pred             ---cC-----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHH-HHHHHhhhhcC---------CCC---CHHhHHH
Q 022194          184 ---SR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQNAEG---------SGL---APFDCWI  242 (301)
Q Consensus       184 ---~~-----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~-~~~~~~~~~~~---------~~~---~~~~~~~  242 (301)
                         ..     ....++|+++.|+||++.+|.+  .|+++++++.+. +.+.......+         .+.   .....++
T Consensus       238 ~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~a  315 (452)
T 2dgk_A          238 PFVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYY  315 (452)
T ss_dssp             HHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHH
T ss_pred             HhhCccchhhcCCCCCcEEEECcccccCCCCC--eEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHH
Confidence               11     1123689999999998766554  699988765432 22111011100         011   1223334


Q ss_pred             HHccc--ccHHHHHHHHHHHHHHHHHHHHhCCCcceE
Q 022194          243 CLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKV  277 (301)
Q Consensus       243 ~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v  277 (301)
                      ++..+  +.+.++.++..++++++.+.|++++++..+
T Consensus       316 al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~  352 (452)
T 2dgk_A          316 EFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI  352 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Confidence            33332  335677788899999999999988766443

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.85  E-value=2e-21  Score=175.88  Aligned_cols=249  Identities=16%  Similarity=0.142  Sum_probs=151.2

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~~~~~i~~~sG~~ai~~~~   87 (301)
                      ..++||+++.  +++|. ++|.+........+  ....+.   +..+.++++.+++++.+ +.+++++++||++|+.+++
T Consensus        57 ~~~iD~~~~~~~~~lg~-~~~~v~~a~~~~~~--~~~~~~---~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al  130 (453)
T 2cy8_A           57 NVYLDFFGGHGALVLGH-GHPRVNAAIAEALS--HGVQYA---ASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLAL  130 (453)
T ss_dssp             CEEEESCTTTTSCTTCB-TCHHHHHHHHHHHT--TTCSSC---SSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHH
T ss_pred             CEEEECcccHhhcccCC-CCHHHHHHHHHHHH--hCCCCC---CCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHH
Confidence            3688997332  77888 55555444322211  111111   22345889999999888 5667788888999986444


Q ss_pred             hc---cCCCCeEEEcCCCCccHHHHHhhhc-------ccCCc------EEEEecCCCHHHHHhhcC---CCceEEEEeCC
Q 022194           88 HL---LGTGEEIVAGDDLYGGTDRLLSRVT-------PKTGV------VVKRVNTCDLDEVASAIG---PWTKLVWVESP  148 (301)
Q Consensus        88 ~~---~~~g~~Vlv~~~~y~~~~~~~~~~~-------~~~g~------~~~~~~~~d~~~l~~~l~---~~~~~v~i~~~  148 (301)
                      .+   +.++++|++.+|.||++........       ...|+      .+..++..|+++++++++   +++++|+++..
T Consensus       131 ~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~  210 (453)
T 2cy8_A          131 RVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPV  210 (453)
T ss_dssp             HHHHHHHCCCEEEEECC----------------------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSS
T ss_pred             HHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCC
Confidence            43   4455789999999997653221101       01233      345566678999999887   46778877777


Q ss_pred             CCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccccCc-----cCCCCcEEEecccccccCCCCceeeEEEEcchh
Q 022194          149 TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (301)
Q Consensus       149 ~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~~~-----~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~  219 (301)
                      +|++|.+.+    +++|.++|++||+++|+||+|+.......     .....|+  .|+||++++  |+++|++++++ .
T Consensus       211 ~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di--~s~sK~l~~--G~~~G~v~~~~-~  285 (453)
T 2cy8_A          211 GSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQPDL--TCLAKASAG--GLPGGILGGRE-D  285 (453)
T ss_dssp             EHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHTCCCSE--EEEEGGGGT--TSSCEEEEECH-H
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHhCCCCcE--EEEChhhhC--CcceEEEechH-H
Confidence            778998877    99999999999999999999983211111     1122454  489999963  57889999875 4


Q ss_pred             HHHHHHH-----hhhhcCCCCCHHhHHHHHccccc-H-HHHHHHHHHHHHHHHHHHHh
Q 022194          220 LAKELYF-----LQNAEGSGLAPFDCWICLRGVKT-M-ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       220 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~l~~~l~~  270 (301)
                      +.+.+..     .....+...++..++++...++. + ++..+++.++.+++.+.|++
T Consensus       286 ~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~  343 (453)
T 2cy8_A          286 VMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNH  343 (453)
T ss_dssp             HHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            4443322     11222345667777776666655 3 34556667777777777765

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.85  E-value=3.5e-21  Score=173.20  Aligned_cols=252  Identities=10%  Similarity=0.006  Sum_probs=150.3

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCC-C-CchHHHHHHHHHhhcCC--CceEEecchHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-G-NPTRDALESLLAKLDKA--DRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g-~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~   84 (301)
                      ..++||+++  ++++|.. +|.+........+  . .. .|... + .+.+.++++++++.++.  +++++++||++|+.
T Consensus        29 ~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~--~-~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~  103 (430)
T 3i4j_A           29 RRYLDGSSGALVANIGHG-RAEVGERMAAQAA--R-LP-FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATE  103 (430)
T ss_dssp             CEEEETTHHHHTCTTCBC-CHHHHHHHHHHHH--H-CC-CCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHH
T ss_pred             CEEEECCCchhccccCCC-CHHHHHHHHHHHH--h-cc-cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHH
Confidence            468999854  6889976 4444433222111  1 11 12221 2 24589999999999854  56777788899986


Q ss_pred             -HHHhcc--------CCCCeEEEcCCCCccHHHHHhhhcccCC---------c--EEEEecCC--------CHHHHHhhc
Q 022194           85 -AVTHLL--------GTGEEIVAGDDLYGGTDRLLSRVTPKTG---------V--VVKRVNTC--------DLDEVASAI  136 (301)
Q Consensus        85 -~~~~~~--------~~g~~Vlv~~~~y~~~~~~~~~~~~~~g---------~--~~~~~~~~--------d~~~l~~~l  136 (301)
                       ++..+.        .++++|++.+|.||++............         .  .+..++..        |++++++++
T Consensus       104 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l  183 (430)
T 3i4j_A          104 SAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALL  183 (430)
T ss_dssp             HHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHH
Confidence             444443        4578999999999987532211111000         0  22233332        347888887


Q ss_pred             C----CCceEEEEeCCCC-Ccccccc----HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCC-CCcEEEecccccc
Q 022194          137 G----PWTKLVWVESPTN-PRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLEL-GADIVMHSATKFI  202 (301)
Q Consensus       137 ~----~~~~~v~i~~~~n-p~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~-~~di~~~S~sK~~  202 (301)
                      +    +++++|+++.+++ ++|...+    +++|+++|++||+++|+||+|... ...   ..... +....+.++||++
T Consensus       184 ~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l  263 (430)
T 3i4j_A          184 EREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGL  263 (430)
T ss_dssp             HHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGG
T ss_pred             HhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEcccc
Confidence            6    4566777777777 8888766    999999999999999999998732 211   11222 3333344689999


Q ss_pred             cCCCC-ceeeEEEEcchhHHHHHHHh----hhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHh
Q 022194          203 AGHSD-VMAGVLAVKGERLAKELYFL----QNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       203 ~g~~g-~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ++  | ++.|++++++ .+.+.+...    ....++..++..+.+++.+++.+  ++..++..++.+++++.|++
T Consensus       264 ~~--G~~r~G~~~~~~-~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~  335 (430)
T 3i4j_A          264 AA--GYAPLAGLLAAP-QVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQA  335 (430)
T ss_dssp             TT--TSSCCEEEEECH-HHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             cC--CccccEEEEECH-HHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            53  7 8899999864 565655442    33344566777777776666543  22345555555555555543

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.85  E-value=3.3e-21  Score=175.47  Aligned_cols=209  Identities=18%  Similarity=0.204  Sum_probs=152.6

Q ss_pred             HHHHHHHHHhhcCCCceEEe-cchHHHHHH-HHhc----cCCCC-----eEEEcCCCCccHHHHHhhhcccCCcEEEEec
Q 022194           57 RDALESLLAKLDKADRALCF-TSGMAALAA-VTHL----LGTGE-----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~i~~-~sG~~ai~~-~~~~----~~~g~-----~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~  125 (301)
                      ++++++++++++|.+..+++ ++|++++.+ ++.+    .++||     +|+++++.|+.+.    ..+...|.+++.++
T Consensus       109 ~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~----~~~~~~G~~vv~v~  184 (474)
T 1wyu_B          109 MWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNP----ATASMAGYQVREIP  184 (474)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHH----HHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhH----HHHHHCCCEEEEec
Confidence            78899999999999866545 666787753 3332    35777     9999999998886    44567788999998


Q ss_pred             CC-----CHHHHHhhcCCCceEEEEeCCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCcccc--CccCCCCcEEEec
Q 022194          126 TC-----DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLS--RPLELGADIVMHS  197 (301)
Q Consensus       126 ~~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~-~~l~~l~~l~~~~~~~li~D~~~~~~~~~--~~~~~~~di~~~S  197 (301)
                      .+     |++++++++++++++|++++| |++|.+ .++++|+++|+++|+++|+|++|+.+...  .+...++|+++.|
T Consensus       185 ~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s  263 (474)
T 1wyu_B          185 SGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLN  263 (474)
T ss_dssp             BCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECC
T ss_pred             CCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEe
Confidence            75     899999999989999999997 689998 69999999999999999999999765532  3334579999999


Q ss_pred             ccccccCCC---CceeeEEEEcchhHHHHHHH-hh------------------hhcCCCCCHHhHHHHHccc-----ccH
Q 022194          198 ATKFIAGHS---DVMAGVLAVKGERLAKELYF-LQ------------------NAEGSGLAPFDCWICLRGV-----KTM  250 (301)
Q Consensus       198 ~sK~~~g~~---g~~~g~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~~~~~l-----~~~  250 (301)
                      +||+|++|.   |++.|+++++++. .+.+.. ..                  .....+.+...+.++...+     +.+
T Consensus       264 ~~K~~~~p~g~gG~~~G~~~~~~~l-~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l  342 (474)
T 1wyu_B          264 LHKTFTVPHGGGGPGSGPVGVKAHL-APYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGL  342 (474)
T ss_dssp             TTTTTCCCCTTSCCCCCCEEECGGG-GGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccCCCCCCCCeEEEEEcHHH-HHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHH
Confidence            999997653   3578999998653 332220 00                  0011122333333333333     234


Q ss_pred             HHHHHHHHHHHHHHHHHHHhC
Q 022194          251 ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+..++..++++++.+.|++.
T Consensus       343 ~~~~~~~~~~~~~l~~~L~~~  363 (474)
T 1wyu_B          343 KKAAALAVLNARYLKELLKEK  363 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            555777888889999999875

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.85  E-value=8.4e-21  Score=171.94  Aligned_cols=208  Identities=13%  Similarity=0.124  Sum_probs=148.3

Q ss_pred             HHHHHHHHHhhcCCCc-eEEecchH-HHHH-HHHhccC--CCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC---C-
Q 022194           57 RDALESLLAKLDKADR-ALCFTSGM-AALA-AVTHLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~-~i~~~sG~-~ai~-~~~~~~~--~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~---~-  127 (301)
                      .+++++++++++|.+. ++++++|| .++. ++..+..  +++.|+++++.|+++.    ..++..|++++.++.   + 
T Consensus       135 ~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~----~~~~~~G~~~~~v~~~~~~~  210 (456)
T 2z67_A          135 TNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI----KAVSFVGMNMRLVETVLDGD  210 (456)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEETT
T ss_pred             HHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHH----HHHHHcCCCceEEEEeccCC
Confidence            5778999999999874 45556667 4443 4443322  6778999999998875    445567888888775   2 


Q ss_pred             ----CHHHHHhhc-C----CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-Cc-----cCCCCc
Q 022194          128 ----DLDEVASAI-G----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RP-----LELGAD  192 (301)
Q Consensus       128 ----d~~~l~~~l-~----~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~-----~~~~~d  192 (301)
                          |++++++++ +    .++.+|+++.++|++|.+.|+++|+++|+++|+++++|++|+....+ .+     ...++|
T Consensus       211 ~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D  290 (456)
T 2z67_A          211 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVD  290 (456)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCS
T ss_pred             CCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCC
Confidence                799999998 4    46778888999999999999999999999999999999998855431 11     111789


Q ss_pred             EEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCC--CHHhHHHHHccc--ccHHHHHHHHHHHHHHHHHHH
Q 022194          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGV--KTMALRVEKQQDNAQKIAEFL  268 (301)
Q Consensus       193 i~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l  268 (301)
                      +++.|+||++++|.|  +|+++++++.+.+.+..  ...+...  +....++++..+  +.+.+..++..++++++.+.|
T Consensus       291 ~~~~s~hK~~~~p~g--~G~l~~~~~~~~~~l~~--~~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L  366 (456)
T 2z67_A          291 AVVSSSDKNLLTPIG--GGLVYSTDAEFIKEISL--SYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELL  366 (456)
T ss_dssp             EEEEEHHHHHCCCSS--CEEEEESCHHHHHHHHT--TSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcCCCCC--eEEEEEcCHHHHhhcCc--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998877654  69999976666554422  1222211  122233333322  335667788888899999999


Q ss_pred             HhCC
Q 022194          269 ASHP  272 (301)
Q Consensus       269 ~~~~  272 (301)
                      ++++
T Consensus       367 ~~~~  370 (456)
T 2z67_A          367 NDLS  370 (456)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            8874

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.85  E-value=1.7e-20  Score=172.44  Aligned_cols=214  Identities=18%  Similarity=0.176  Sum_probs=151.6

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhcc-------C-CCC------eEEEcCCCCccHHHHHhhhcccCCc
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL-------G-TGE------EIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~-------~-~g~------~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      .+++++++++++|.+  +.+++++||+|+. ++..+.       + +|+      +|+++++.|+++...+    ...|.
T Consensus       150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~----~~~g~  225 (515)
T 2jis_A          150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGA----AFLGL  225 (515)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHH----HHTTS
T ss_pred             HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHH----HHcCC
Confidence            567888999999986  5677788888875 333331       2 465      8899999999887544    33344


Q ss_pred             ---EEEEecCC-----CHHHHHhhcCC------CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC
Q 022194          120 ---VVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR  185 (301)
Q Consensus       120 ---~~~~~~~~-----d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~  185 (301)
                         +++.++.+     |++++++++.+      ++++|++++++|++|.+.|+++|+++|+++|+|+++|++|+.+....
T Consensus       226 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~  305 (515)
T 2jis_A          226 GTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLS  305 (515)
T ss_dssp             CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGC
T ss_pred             CCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhC
Confidence               77777764     78999998864      48999999999999999999999999999999999999999876643


Q ss_pred             c-----c-C-CCCcEEEecccccccCCCCceeeEEEEcch-hHHHHHH-----Hhhhh----------cCC------CCC
Q 022194          186 P-----L-E-LGADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKELY-----FLQNA----------EGS------GLA  236 (301)
Q Consensus       186 ~-----~-~-~~~di~~~S~sK~~~g~~g~~~g~~~~~~~-~~~~~~~-----~~~~~----------~~~------~~~  236 (301)
                      +     . . .++|+++.|+||++++|.|  .|+++++++ .+.+...     .....          ...      ...
T Consensus       306 ~~~~~~~~g~~~aD~v~~s~hK~l~~p~g--~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~  383 (515)
T 2jis_A          306 QTHRHLLDGIQRADSVAWNPHKLLAAGLQ--CSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVD  383 (515)
T ss_dssp             TTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCC
T ss_pred             hhhHhhcCCCccCCEEEECcccccCCCCC--eeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCccc
Confidence            2     1 1 2689999999999977765  588888876 3433211     11000          000      011


Q ss_pred             HHhHHHHHccc--ccHHHHHHHHHHHHHHHHHHHHhCCCcce
Q 022194          237 PFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKK  276 (301)
Q Consensus       237 ~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~v~~  276 (301)
                      ....+++++.+  +.+.+..++..++++++.+.|++.+++..
T Consensus       384 al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  425 (515)
T 2jis_A          384 CLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFEL  425 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            23334433333  33566778888999999999998876543

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.85  E-value=3.9e-20  Score=165.72  Aligned_cols=209  Identities=19%  Similarity=0.180  Sum_probs=137.1

Q ss_pred             HHHH-HHHHHhhcCCCceE-EecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhh-hcccCCcEEEEecCC-----
Q 022194           57 RDAL-ESLLAKLDKADRAL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR-VTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        57 ~~~l-~~~l~~~~~~~~~i-~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~-~~~~~g~~~~~~~~~-----  127 (301)
                      .+++ ++.+++.++.+... ++++|++|+. ++..++++||+|++++|.|++....... .....++....++.+     
T Consensus        79 ~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  158 (425)
T 3ecd_A           79 VEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTML  158 (425)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSS
T ss_pred             HHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCc
Confidence            4444 47788999988764 4888998885 6667899999999999999873211111 122233455566543     


Q ss_pred             -CHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-----CccCCCCcEEEecccc
Q 022194          128 -DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATK  200 (301)
Q Consensus       128 -d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~S~sK  200 (301)
                       |++++++++. .++++|++++|+||  ...++++|+++|++||+++|+||+|..+...     .... ..|+++.|+||
T Consensus       159 ~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK  235 (425)
T 3ecd_A          159 IDYDQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHK  235 (425)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSG
T ss_pred             cCHHHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCc
Confidence             8999999986 58899999988884  6788999999999999999999997654332     1222 37899999999


Q ss_pred             cccCCCCceeeEEEEcchhHHHHHHHhhhhcC-CCCCHHhHHHH----Hccc-ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWIC----LRGV-KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       201 ~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~l-~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +++|+   ++|+++++++.+.+.+........ .+.......++    .... +.+.+..++..++.+++.+.|++.
T Consensus       236 ~l~g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (425)
T 3ecd_A          236 TLRGP---RGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG  309 (425)
T ss_dssp             GGCCC---SCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCC---CcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence            99654   579999887666665544332221 12222222211    1112 334567788888888999999873

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.85  E-value=2e-21  Score=176.06  Aligned_cols=255  Identities=12%  Similarity=0.082  Sum_probs=162.7

Q ss_pred             eeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH-
Q 022194           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV-   86 (301)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~-   86 (301)
                      ++|||.++  +.++|. ++|.+..+...+.+  ....+.+..+..+...+++++++++++  .+++++++||++|+.++ 
T Consensus        76 ~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~--~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Al  152 (457)
T 3tfu_A           76 EVLDAMSSWWTAIHGH-GHPALDQALTTQLR--VMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAA  152 (457)
T ss_dssp             EEEETTHHHHTCTTCB-TCHHHHHHHHHHHH--HCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHH
T ss_pred             EEEECCCcHhhhccCC-CCHHHHHHHHHHHH--hccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHH
Confidence            79999854  578998 45555443322211  111111122234568899999999995  45788888899998644 


Q ss_pred             HhccC-------CC-CeEEEcCCCCccHHHHHhhhcc------------cCCcEEEEecC-----CCHHHHHhhcC---C
Q 022194           87 THLLG-------TG-EEIVAGDDLYGGTDRLLSRVTP------------KTGVVVKRVNT-----CDLDEVASAIG---P  138 (301)
Q Consensus        87 ~~~~~-------~g-~~Vlv~~~~y~~~~~~~~~~~~------------~~g~~~~~~~~-----~d~~~l~~~l~---~  138 (301)
                      ..+..       +| ++|++.++.||+..........            ..+......+.     .|+++++++++   +
T Consensus       153 k~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~  232 (457)
T 3tfu_A          153 KMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAG  232 (457)
T ss_dssp             HHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCC
Confidence            33332       44 5899999999886533212111            11223333322     26788988887   6


Q ss_pred             CceEEEEeC-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCcc-ccC---ccCCCCcEEEecccccccCCCCce
Q 022194          139 WTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPV-LSR---PLELGADIVMHSATKFIAGHSDVM  209 (301)
Q Consensus       139 ~~~~v~i~~-~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~-~~~---~~~~~~di~~~S~sK~~~g~~g~~  209 (301)
                      ++++|+++. ++|++|.+.+    +++|.++|++||+++|+||+|.... ...   ....+....+.|++|.++| +.++
T Consensus       233 ~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~g-G~~~  311 (457)
T 3tfu_A          233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTG-GYLS  311 (457)
T ss_dssp             GEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGT-TSSC
T ss_pred             CEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhC-CCcc
Confidence            788999998 8999998875    9999999999999999999987322 111   1122333333489999965 2257


Q ss_pred             eeEEEEcchhHHHHHHHh-----hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhC
Q 022194          210 AGVLAVKGERLAKELYFL-----QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       210 ~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .|++++++ .+.+.+...     ....+.+.++..+++++..++.+.  +..++..++.+++++.|+++
T Consensus       312 lG~v~~~~-~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l  379 (457)
T 3tfu_A          312 LAATLCTA-DVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTA  379 (457)
T ss_dssp             CEEEEEEH-HHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGG
T ss_pred             eEEEEEcH-HHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            89998875 455544311     223445667777777777766542  34566677777788887753

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.85  E-value=4e-21  Score=172.65  Aligned_cols=251  Identities=14%  Similarity=0.135  Sum_probs=158.7

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC-CCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-ADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~-~~~~i~~~sG~~ai~~~~   87 (301)
                      ..++||.++.  ..+|.. +|.+......+.+  ....+.|   ..+.+.++++++++.++ .+++++++||++|+.+++
T Consensus        52 ~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~--~~~~~~~---~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al  125 (427)
T 3fq8_A           52 NRYIDYVGTWGPAICGHA-HPEVIEALKVAME--KGTSFGA---PCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVL  125 (427)
T ss_dssp             CEEEESSGGGTTCTTCBT-CHHHHHHHHHHHT--TCSCCSS---CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHH
T ss_pred             CEEEECCCchhhhccCCC-CHHHHHHHHHHHH--hCCCcCC---CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH
Confidence            4689998433  568874 4544443322211  1112222   34568999999999984 557778888899986444


Q ss_pred             h---ccCCCCeEEEcCCCCccHHHHHhhh----------cccCC------cEEEEecCCCHHHHHhhcCC---CceEEEE
Q 022194           88 H---LLGTGEEIVAGDDLYGGTDRLLSRV----------TPKTG------VVVKRVNTCDLDEVASAIGP---WTKLVWV  145 (301)
Q Consensus        88 ~---~~~~g~~Vlv~~~~y~~~~~~~~~~----------~~~~g------~~~~~~~~~d~~~l~~~l~~---~~~~v~i  145 (301)
                      .   ....+++|++.++.||+........          ....+      ..+..++.+|++++++++++   ++++|++
T Consensus       126 ~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~  205 (427)
T 3fq8_A          126 RIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVIL  205 (427)
T ss_dssp             HHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEE
T ss_pred             HHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEE
Confidence            2   2344688999999998753211000          00111      12556666789999998864   6888888


Q ss_pred             eCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCcccc---CccCCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       146 ~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      +.+++++|.+.+    +++|+++|++||+++|+||+|+.....   .....+....+.|+||+++  +|++.|++++++ 
T Consensus       206 ~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~sK~~~--~G~~~G~~~~~~-  282 (427)
T 3fq8_A          206 EPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLTTLGKIIG--GGLPVGAYGGKR-  282 (427)
T ss_dssp             CSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEEEECGGGG--TTSSCEEEEECH-
T ss_pred             cCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChhhhhhhhh--CCcceEEEEEcH-
Confidence            888888999988    999999999999999999999832111   1112233333567889996  478899998864 


Q ss_pred             hHHHHHHHhh---hhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHh
Q 022194          219 RLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       219 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~  270 (301)
                      .+.+.+....   ...+...++..++++..+++.+  ++..++..++.+++++.|++
T Consensus       283 ~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~  339 (427)
T 3fq8_A          283 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLA  339 (427)
T ss_dssp             HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            4544333211   2223345777777766665432  33455666666666666654

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.85  E-value=5.1e-20  Score=170.01  Aligned_cols=173  Identities=16%  Similarity=0.214  Sum_probs=126.0

Q ss_pred             cccCC-CCch-HHHHHHH-HHhhcC----C--CceEEecch-HHHHHHHH-h-----ccCCCCeEEEcCCCCccHHHHHh
Q 022194           48 DYTRS-GNPT-RDALESL-LAKLDK----A--DRALCFTSG-MAALAAVT-H-----LLGTGEEIVAGDDLYGGTDRLLS  111 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~-l~~~~~----~--~~~i~~~sG-~~ai~~~~-~-----~~~~g~~Vlv~~~~y~~~~~~~~  111 (301)
                      .|.+. |.+. ++++.+. +.+..+    .  ++.+++++| ++++..+. .     ++++||+|++++|.|+++.... 
T Consensus       133 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~-  211 (546)
T 2zy4_A          133 NYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIP-  211 (546)
T ss_dssp             SCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHH-
T ss_pred             CCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHH-
Confidence            46555 5544 6665544 444432    1  245565555 58886443 3     4789999999999999987432 


Q ss_pred             hhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHH--HHcCCEEEEeCCcC
Q 022194          112 RVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMA--HAHGALLLVDNSIM  179 (301)
Q Consensus       112 ~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~--~~~~~~li~D~~~~  179 (301)
                       .....|.+++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|+++|  +++|+++|+||+|+
T Consensus       212 -~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~  290 (546)
T 2zy4_A          212 -ELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYG  290 (546)
T ss_dssp             -HSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTG
T ss_pred             -HHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcch
Confidence             234557888888752       788999888888999999999999999976   67788998  78999999999998


Q ss_pred             Ccccc--Ccc--CCCCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          180 SPVLS--RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       180 ~~~~~--~~~--~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                      .....  ...  ..+.++++.||||++ |.+|+|.|+++++++.+.+.
T Consensus       291 ~~~~~~~s~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~l~~~  337 (546)
T 2zy4_A          291 TFADDFQSLFAICPENTLLVYSFSKYF-GATGWRLGVVAAHQQNVFDL  337 (546)
T ss_dssp             GGSTTCCCHHHHCGGGEEEEEESTTTT-TCGGGCEEEEEEESSCHHHH
T ss_pred             hhcccCcCHHHhCCCCEEEEEeCcccc-CCCCcceEEEEECCHHHHHH
Confidence            65432  111  125689999999999 66789999999987534443

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.85  E-value=2.3e-21  Score=174.53  Aligned_cols=248  Identities=16%  Similarity=0.148  Sum_probs=158.3

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~~~~~i~~~sG~~ai~~~~   87 (301)
                      ..++||.++.  .++|.. +|.+......+..  ....+.   +..+...++++++++.+ +.+++++++||++|+..++
T Consensus        55 ~~ylD~~~~~~~~~lG~~-~p~v~~a~~~~~~--~~~~~~---~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai  128 (434)
T 3l44_A           55 NKYIDYLAAYGPIITGHA-HPHITKAITTAAE--NGVLYG---TPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTI  128 (434)
T ss_dssp             CEEEECCGGGTTCSSCBT-CHHHHHHHHHHHH--HCSCCS---SCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHH
T ss_pred             CEEEECCCchhccccCCC-CHHHHHHHHHHHH--hCcCCC---CCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHH
Confidence            4689997432  468874 4544443222211  011111   22455889999999988 5567888888999986443


Q ss_pred             -hcc--CCCCeEEEcCCCCccHHHHHhhhcccCC-------------c------EEEEecCCCHHHHHhhcC---CCceE
Q 022194           88 -HLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTG-------------V------VVKRVNTCDLDEVASAIG---PWTKL  142 (301)
Q Consensus        88 -~~~--~~g~~Vlv~~~~y~~~~~~~~~~~~~~g-------------~------~~~~~~~~d~~~l~~~l~---~~~~~  142 (301)
                       .+.  .++++|++.++.||++...   .....+             .      .+..++.+|+++++++++   +++++
T Consensus       129 ~~a~~~~~~~~vi~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~  205 (434)
T 3l44_A          129 RVARAYTGRTKIMKFAGCYHGHSDL---VLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAA  205 (434)
T ss_dssp             HHHHHHHCCCEEEEETTCCCCSSGG---GGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEE
T ss_pred             HHHHHhhCCCEEEEEcCccCCCcHH---HHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEE
Confidence             333  3678999999999986421   111111             1      455666678999998886   46777


Q ss_pred             EEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccccC---ccCCCCcEEEecccccccCCCCceeeEEEE
Q 022194          143 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSATKFIAGHSDVMAGVLAV  215 (301)
Q Consensus       143 v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~~---~~~~~~di~~~S~sK~~~g~~g~~~g~~~~  215 (301)
                      |+++.+++++|.+.+    +++|.++|++||++||+||+|.......   ....+....+.++||.++  +|++.|++++
T Consensus       206 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~t~sK~~~--~G~~iG~~~~  283 (434)
T 3l44_A          206 ILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLTALGKVIG--GGLPIGAYGG  283 (434)
T ss_dssp             EEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEEEEEGGGG--TTSSCEEEEE
T ss_pred             EEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCeeehhhhhc--CCcCeeeEEE
Confidence            888877777888876    9999999999999999999997431111   111233333567999995  4688999987


Q ss_pred             cchhHHHHHHHh---hhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHh
Q 022194          216 KGERLAKELYFL---QNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       216 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ++ .+.+.+...   ....+.+.++..++++..+++.+  ++..++..++.+++++.|++
T Consensus       284 ~~-~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  342 (434)
T 3l44_A          284 KK-EIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILE  342 (434)
T ss_dssp             CH-HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             cH-HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            64 454433221   12234556777777666665533  34456666666666666654

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.85  E-value=2e-20  Score=171.32  Aligned_cols=216  Identities=15%  Similarity=0.074  Sum_probs=155.7

Q ss_pred             HHHHHHHHHhhcCCC-------ceEEecchHHHHH-HHHhccCC--------CC-----eEEEcCCCCccHHHHHhhhcc
Q 022194           57 RDALESLLAKLDKAD-------RALCFTSGMAALA-AVTHLLGT--------GE-----EIVAGDDLYGGTDRLLSRVTP  115 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-------~~i~~~sG~~ai~-~~~~~~~~--------g~-----~Vlv~~~~y~~~~~~~~~~~~  115 (301)
                      .+++++++++++|.+       ..+++++|++++. ++.++..+        |+     +|+++++.|..+.    ..++
T Consensus        97 e~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~----~~~~  172 (502)
T 3hbx_A           97 QNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE----KFAR  172 (502)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH----HHHH
T ss_pred             HHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH----HHHH
Confidence            456778899999887       2345788888875 55555443        66     8999999998875    5566


Q ss_pred             cCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc------CCEEEEeCCcCCccc
Q 022194          116 KTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH------GALLLVDNSIMSPVL  183 (301)
Q Consensus       116 ~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~------~~~li~D~~~~~~~~  183 (301)
                      ..|++++.++.+      |++++++++.+++++|++++++||||.+.|+++|+++|+++      |+++++|++|+.+..
T Consensus       173 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~  252 (502)
T 3hbx_A          173 YFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIA  252 (502)
T ss_dssp             HTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH
T ss_pred             HcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhh
Confidence            778888888853      78999999999999999999999999999999999999999      999999999985531


Q ss_pred             ---cC-----ccCCCCcEEEecccccccCCCCceeeEEEEcchhHH-HHHHHhhhhcC---------CCC---CHHhHHH
Q 022194          184 ---SR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQNAEG---------SGL---APFDCWI  242 (301)
Q Consensus       184 ---~~-----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~-~~~~~~~~~~~---------~~~---~~~~~~~  242 (301)
                         ..     ....++|++..|.||++.+|.|  .|+++.+++... +.+.......+         .+.   .....++
T Consensus       253 p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g--~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~  330 (502)
T 3hbx_A          253 PFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYY  330 (502)
T ss_dssp             HHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHH
T ss_pred             hhhCcccccccCCCCceEEEECcccccCCCCC--eEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHH
Confidence               11     1123789999999999977776  477777655432 21110001111         111   1222333


Q ss_pred             HHcc--cccHHHHHHHHHHHHHHHHHHHHhCCCcceEe
Q 022194          243 CLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKVN  278 (301)
Q Consensus       243 ~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~  278 (301)
                      ++..  .+.+.++.++..++++++.+.|++++++..+.
T Consensus       331 al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~  368 (502)
T 3hbx_A          331 QLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVS  368 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            3332  23456788899999999999999987665443

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.85  E-value=1.6e-20  Score=170.31  Aligned_cols=213  Identities=18%  Similarity=0.162  Sum_probs=131.9

Q ss_pred             CCchHHHHH----HHHHhhcCCCc----eE-EecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHh----hhcccCC
Q 022194           53 GNPTRDALE----SLLAKLDKADR----AL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS----RVTPKTG  118 (301)
Q Consensus        53 g~~~~~~l~----~~l~~~~~~~~----~i-~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~----~~~~~~g  118 (301)
                      |.+..++++    +++++++|.+.    +. +++||++|+. ++.++++|||+|++.++.|.++.....    ..+...|
T Consensus        94 G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g  173 (490)
T 2a7v_A           94 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS  173 (490)
T ss_dssp             ----CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcC
Confidence            444444555    89999999985    34 4468998875 778899999999999998876532110    0122233


Q ss_pred             cE--EEEec------CCCHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcc-----cc
Q 022194          119 VV--VKRVN------TCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LS  184 (301)
Q Consensus       119 ~~--~~~~~------~~d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~-----~~  184 (301)
                      ..  +..++      ..|++++++++. .++++|+++.++||  ...|+++|+++|+++|+++++|++|..+.     ..
T Consensus       174 ~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~  251 (490)
T 2a7v_A          174 IFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP  251 (490)
T ss_dssp             -------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC
T ss_pred             CeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCC
Confidence            32  22332      128999999886 46889888888876  46799999999999999999999986442     23


Q ss_pred             CccCCCCcEEEecccccccCCCCceeeEEEEcch--------------hHHHHHHHhhhhcC-CCCCHHhHHHHHccc--
Q 022194          185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAEG-SGLAPFDCWICLRGV--  247 (301)
Q Consensus       185 ~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l--  247 (301)
                      .+.. ++|++++|+||+++||   ++|+++++++              .+.+++........ .+......+++..++  
T Consensus       252 ~~~~-~aDiv~~S~hK~l~Gp---~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~  327 (490)
T 2a7v_A          252 SPFK-HADIVTTTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ  327 (490)
T ss_dssp             CGGG-TCSEEEEESSGGGCSC---SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHH
T ss_pred             CCCC-CCCEEEECCcccCccc---cchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence            3433 6899999999999776   4699988864              24444443322111 222332222222222  


Q ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          248 ---KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       248 ---~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                         +.+.++.++..+|++++.+.|++.
T Consensus       328 ~~~~~~~~~~~~~~~na~~L~~~L~~~  354 (490)
T 2a7v_A          328 ACTPMFREYSLQVLKNARAMADALLER  354 (490)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence               234677788999999999999875

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.85  E-value=8.8e-21  Score=171.99  Aligned_cols=252  Identities=15%  Similarity=0.083  Sum_probs=155.6

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccC--CCCchHHHHHHHHHhhcC--CCceEEecchHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTR--SGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~--~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~   84 (301)
                      .+++||.++  +..+|..+ |.+......+.+   ...+.+..  +..+.+.+++++++++++  .+++++++||++|+.
T Consensus        50 ~~ylD~~~~~~~~~lG~~~-p~v~~A~~~~~~---~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~  125 (459)
T 4a6r_A           50 NKIIDGMAGLWCVNVGYGR-KDFAEAARRQME---ELPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVD  125 (459)
T ss_dssp             CEEEETTHHHHTCTTCBCC-HHHHHHHHHHHH---HCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHH
T ss_pred             CEEEECCCchhcccCCCCC-HHHHHHHHHHHH---hccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHH
Confidence            468999855  57789864 444433222211   11112222  234568999999999984  457778888899986


Q ss_pred             -HHHhccC--------CCCeEEEcCCCCccHHHHHhhhc---------cc--CCcEEEEecC----C---C--------H
Q 022194           85 -AVTHLLG--------TGEEIVAGDDLYGGTDRLLSRVT---------PK--TGVVVKRVNT----C---D--------L  129 (301)
Q Consensus        85 -~~~~~~~--------~g~~Vlv~~~~y~~~~~~~~~~~---------~~--~g~~~~~~~~----~---d--------~  129 (301)
                       ++..+..        ++++|++.+|.||++........         ..  .+.....++.    .   |        +
T Consensus       126 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~  205 (459)
T 4a6r_A          126 TMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAA  205 (459)
T ss_dssp             HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHH
Confidence             4444443        57899999999998753322111         11  1233333222    1   2        6


Q ss_pred             HHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-cccC---ccCCCCcEEEec
Q 022194          130 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLSR---PLELGADIVMHS  197 (301)
Q Consensus       130 ~~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~~---~~~~~~di~~~S  197 (301)
                      +++++++.    +++++|+++.+++++|.+.+    +++|+++|++||+++|+||+|... ..+.   ....+....+.+
T Consensus       206 ~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t  285 (459)
T 4a6r_A          206 RWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFT  285 (459)
T ss_dssp             HHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE
T ss_pred             HHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee
Confidence            78888875    45677777777777777766    999999999999999999998732 2221   111233333446


Q ss_pred             ccccccCCCCceeeEEEEcchhHHHHHH---HhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHH-HHHHHHHHHH
Q 022194          198 ATKFIAGHSDVMAGVLAVKGERLAKELY---FLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQ-DNAQKIAEFL  268 (301)
Q Consensus       198 ~sK~~~g~~g~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~-~~~~~l~~~l  268 (301)
                      +||++++ ++++.|++++++ .+.+.+.   ......++..++..+++++..++.+.  +..++.. ++.+++++.|
T Consensus       286 ~sK~l~g-g~~~lg~v~~~~-~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l  360 (459)
T 4a6r_A          286 AAKGLSS-GYLPIGAVFVGK-RVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRW  360 (459)
T ss_dssp             ECGGGGT-TSSCCEEEEECH-HHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHH
T ss_pred             hhhhhcC-CCCCccceeeCH-HHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            8899954 457889998875 4555544   22333445567777777777666432  2344455 5555555555

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.85  E-value=8.8e-21  Score=170.16  Aligned_cols=251  Identities=14%  Similarity=0.111  Sum_probs=153.1

Q ss_pred             ceeeecCCCCC--CCCccccCeeecceeecCCCCCCCCccccCC-CCchHHHHHHHHHhhc-C-C-CceEEecchHHHHH
Q 022194           11 TLLMNFSNEFD--PYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLD-K-A-DRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~--~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~-~-~-~~~i~~~sG~~ai~   84 (301)
                      ..++||+++..  ++|. ++|.+........+.   .......+ ..+...++++.+++++ + . ++++++++|++|+.
T Consensus        41 ~~~id~~~~~~~~~lg~-~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~  116 (426)
T 1sff_A           41 REYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKK---LSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVE  116 (426)
T ss_dssp             CEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTT---CSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHH
T ss_pred             CEEEEcccChhhcccCC-CCHHHHHHHHHHHHh---CCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHH
Confidence            36889873332  7887 445454433222111   11111111 2345889999999998 5 3 45666677789986


Q ss_pred             HH-H---hccCCCCeEEEcCCCCccHHHHHhhhccc-------CCc---EEEEecCC----------CHHHHHhhcC---
Q 022194           85 AV-T---HLLGTGEEIVAGDDLYGGTDRLLSRVTPK-------TGV---VVKRVNTC----------DLDEVASAIG---  137 (301)
Q Consensus        85 ~~-~---~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~-------~g~---~~~~~~~~----------d~~~l~~~l~---  137 (301)
                      ++ .   .+.+++ +|++.+|.|+++...+......       .+.   .++.++.+          |+++++++++   
T Consensus       117 ~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~  195 (426)
T 1sff_A          117 NAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA  195 (426)
T ss_dssp             HHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc
Confidence            44 3   456665 8999999998865322122111       111   14444432          5788888885   


Q ss_pred             --CCceEEEEe-CCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccc-cC---ccCCCCcEEEecccccccCCC
Q 022194          138 --PWTKLVWVE-SPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVL-SR---PLELGADIVMHSATKFIAGHS  206 (301)
Q Consensus       138 --~~~~~v~i~-~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~-~~---~~~~~~di~~~S~sK~~~g~~  206 (301)
                        +++++|+++ .++| ||...+    +++|+++|++||+++|+||+|+.... ..   ....+.++.+.|+||+++ + 
T Consensus       196 ~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~-~-  272 (426)
T 1sff_A          196 APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIA-G-  272 (426)
T ss_dssp             CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGG-T-
T ss_pred             CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEEccccc-C-
Confidence              466788775 4466 997766    99999999999999999999983222 11   112233344558999995 4 


Q ss_pred             CceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          207 DVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       207 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      |++.|++++++ .+.+.+...........++..+.++..+++.+.  +..+++.++.+++.+.|++
T Consensus       273 GlriG~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~  337 (426)
T 1sff_A          273 GFPLAGVTGRA-EVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLA  337 (426)
T ss_dssp             SSCCEEEEEEH-HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcH-HHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            78999999985 444433322223334557777766666655443  2445666667777777665

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.85  E-value=3.4e-20  Score=170.05  Aligned_cols=216  Identities=11%  Similarity=0.065  Sum_probs=151.7

Q ss_pred             HHHHHHHHHhhcCCC----ceEEecchHHHHH-HHHhcc--------CCC-----C-eEEEcCCCCccHHHHHhhhcccC
Q 022194           57 RDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLL--------GTG-----E-EIVAGDDLYGGTDRLLSRVTPKT  117 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~----~~i~~~sG~~ai~-~~~~~~--------~~g-----~-~Vlv~~~~y~~~~~~~~~~~~~~  117 (301)
                      .+++.+++++++|.+    +.+++++||+|+. ++..+.        ++|     + .|+++++.|+++...+.. .. .
T Consensus       134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~-~g-~  211 (504)
T 2okj_A          134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA-LG-F  211 (504)
T ss_dssp             HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH-TT-S
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHH-cC-C
Confidence            455668889999875    4667777888875 444332        145     6 788999999988755422 21 1


Q ss_pred             Cc-EEEEecCC-----CHHHHHhhcCC------CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC
Q 022194          118 GV-VVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR  185 (301)
Q Consensus       118 g~-~~~~~~~~-----d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~  185 (301)
                      |. +++.++.+     |++++++++.+      ++++|++++++|++|.+.|+++|+++|+++|+|+++|++|+.+....
T Consensus       212 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~  291 (504)
T 2okj_A          212 GTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMS  291 (504)
T ss_dssp             CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGC
T ss_pred             CcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhC
Confidence            33 67777765     89999998864      58999999999999999999999999999999999999998776531


Q ss_pred             -----ccC--CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh-hhhc-CC-------------------CCCH
Q 022194          186 -----PLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNAE-GS-------------------GLAP  237 (301)
Q Consensus       186 -----~~~--~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~-~~~~-~~-------------------~~~~  237 (301)
                           ...  .++|+++.|+||++++|.+  .|+++.+++.+.+..... .... +.                   ....
T Consensus       292 ~~~~~~~~g~~~~D~i~~~~hK~~~~p~~--~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~  369 (504)
T 2okj_A          292 RKHRHKLNGIERANSVTWNPHKMMGVLLQ--CSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDI  369 (504)
T ss_dssp             TTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCH
T ss_pred             HhhHhhcCCcccCCEEEECchhhcCCCcc--eEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccH
Confidence                 111  2689999999999977754  688988875444322111 1000 00                   0123


Q ss_pred             HhHHHHHccc--ccHHHHHHHHHHHHHHHHHHHHhCCCcce
Q 022194          238 FDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKK  276 (301)
Q Consensus       238 ~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~v~~  276 (301)
                      ...++++..+  +.+.+..++..++++++.+.|++.+++..
T Consensus       370 l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~  410 (504)
T 2okj_A          370 FKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEM  410 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            3444444433  33566778888999999999998876643

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.84  E-value=8e-20  Score=165.49  Aligned_cols=209  Identities=18%  Similarity=0.167  Sum_probs=145.2

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCC-ccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLY-GGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y-~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+...++++.++++++.++++++++|++|+. ++..++++||  +++.+.| ..+.    ..+...|.+++.++.+    
T Consensus        74 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~----~~~~~~G~~~~~v~~~~~~~  147 (456)
T 2ez2_A           74 SENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTR----YHQEKNGAVFVDIVRDEAHD  147 (456)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHH----HHHHHTTCEEEECBCGGGGC
T ss_pred             ChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhH----HHHHHcCCEEEEeccccccc
Confidence            4558899999999999999999999999985 6666788999  7778999 4434    4445678888877542    


Q ss_pred             -----------CHHHHHhhcCCCc----eEEEEeCCCC-Ccccccc---HHHHHHHHHHcCCEEEEeCCcCCc-------
Q 022194          128 -----------DLDEVASAIGPWT----KLVWVESPTN-PRQQICD---IRKIAEMAHAHGALLLVDNSIMSP-------  181 (301)
Q Consensus       128 -----------d~~~l~~~l~~~~----~~v~i~~~~n-p~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~-------  181 (301)
                                 |++++++++.+++    ++|++++|+| |+|.+.+   +++|+++|++||+++|+||+|+.|       
T Consensus       148 ~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~  227 (456)
T 2ez2_A          148 AGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKE  227 (456)
T ss_dssp             TTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccc
Confidence                       7889998887544    8999999999 9999876   999999999999999999999863       


Q ss_pred             ---ccc-Ccc-------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh-cC----CCCCHHhHHH-HH
Q 022194          182 ---VLS-RPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EG----SGLAPFDCWI-CL  244 (301)
Q Consensus       182 ---~~~-~~~-------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~-~~  244 (301)
                         .+. ...       ....|+++.|++|++ ++ + ++|+++++++.+.+.+...... .+    .+.+.....+ +.
T Consensus       228 ~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~-~~-~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~  304 (456)
T 2ez2_A          228 QEQGFENKSIAEIVHEMFSYADGCTMSGKKDC-LV-N-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAI  304 (456)
T ss_dssp             HSTTCTTSCHHHHHHHHHTTCSEEEEETTTTT-CC-S-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHH
T ss_pred             cccccCCcchhhhhhhhcccCCEEEEeCcccC-CC-C-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHH
Confidence               121 110       123588888888876 43 3 5799988656666655443322 11    1122222111 22


Q ss_pred             cccccH-HHHHHHHHHHHHHHHHHHHhC
Q 022194          245 RGVKTM-ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       245 ~~l~~~-~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..++.+ .+..++..++.+++.+.|++.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~  332 (456)
T 2ez2_A          305 GLREAMQYEYIEHRVKQVRYLGDKLKAA  332 (456)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            222222 345566666777888888763

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.84  E-value=2.8e-20  Score=169.29  Aligned_cols=254  Identities=17%  Similarity=0.127  Sum_probs=163.6

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCcccc-CCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~   85 (301)
                      .++|||.++  +.++|..++. +..+...+.+   ...+.+. .+..+.+.+++++++++++  .+.+++++||++|+..
T Consensus        54 ~~ylD~~s~~~~~~lGh~~p~-v~~A~~~~l~---~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~  129 (476)
T 3i5t_A           54 RRLIDGPAGMWCAQVGYGRRE-IVDAMAHQAM---VLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDS  129 (476)
T ss_dssp             CEEEETTHHHHTCTTCBCCHH-HHHHHHHHHH---HCCCCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHH
T ss_pred             CEEEECCCchhhccCCCCCHH-HHHHHHHHHH---hccCcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHH
Confidence            468999844  5668986444 4433222211   1112222 2234568999999999984  5678888999999864


Q ss_pred             HHh-cc--------CCCCeEEEcCCCCccHHHHHhhhcc-----------cCCcEEEEecC-----C-C--------HHH
Q 022194           86 VTH-LL--------GTGEEIVAGDDLYGGTDRLLSRVTP-----------KTGVVVKRVNT-----C-D--------LDE  131 (301)
Q Consensus        86 ~~~-~~--------~~g~~Vlv~~~~y~~~~~~~~~~~~-----------~~g~~~~~~~~-----~-d--------~~~  131 (301)
                      ++. +.        ..+++|++.++.||++.........           ..+......+.     + +        +++
T Consensus       130 Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  209 (476)
T 3i5t_A          130 ALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQE  209 (476)
T ss_dssp             HHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHH
Confidence            433 32        3467999999999987533211111           12233333222     1 1        778


Q ss_pred             HHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-cccC---cc-CCCCcEEEecc
Q 022194          132 VASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLSR---PL-ELGADIVMHSA  198 (301)
Q Consensus       132 l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~~---~~-~~~~di~~~S~  198 (301)
                      +++.+.    +++++|+++.+++++|...+    +++|+++|++||+++|+||+|+.. ..+.   .. ..+....+.++
T Consensus       210 le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~  289 (476)
T 3i5t_A          210 FEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITF  289 (476)
T ss_dssp             HHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEE
T ss_pred             HHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhh
Confidence            888875    56789999988888887654    999999999999999999999732 2221   12 23333333468


Q ss_pred             cccccCCCC-ceeeEEEEcchhHHHHHHHh-------hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHH
Q 022194          199 TKFIAGHSD-VMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFL  268 (301)
Q Consensus       199 sK~~~g~~g-~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l  268 (301)
                      +|++++  | ++.|++++++ .+.+.+...       ....+...++..+++++.+++.+.  +..++..++.+++++.|
T Consensus       290 sK~l~~--G~~plg~v~~~~-~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L  366 (476)
T 3i5t_A          290 AKGVTS--GYVPLGGLAISE-AVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAAL  366 (476)
T ss_dssp             CGGGGT--TSSCCEEEEECH-HHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             hhhhcC--CCcCeEEEEECH-HHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            899964  6 6889998864 555544332       223445668888888877777543  34567777788888888


Q ss_pred             HhC
Q 022194          269 ASH  271 (301)
Q Consensus       269 ~~~  271 (301)
                      +.+
T Consensus       367 ~~l  369 (476)
T 3i5t_A          367 ASL  369 (476)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            753

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.84  E-value=3.5e-20  Score=167.60  Aligned_cols=253  Identities=15%  Similarity=0.106  Sum_probs=160.0

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      ..++||.++.  .++|.. +|.+.........  ......+..+..+.+.++++.++++++  .+++++++||++|+.++
T Consensus        50 ~~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~a  126 (449)
T 3a8u_X           50 RKVYDSLSGLWTCGAGHT-RKEIQEAVAKQLS--TLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTA  126 (449)
T ss_dssp             CEEEETTHHHHTCTTCBS-CHHHHHHHHHHTT--TCSCCCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHH
T ss_pred             CEEEECCccHhhccCCCC-CHHHHHHHHHHHH--hCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHH
Confidence            3678886322  478877 4545444322221  111001112233558899999999985  44677788889998644


Q ss_pred             H-hccC--------CCCeEEEcCCCCccHHHHHhhhcc-----------cCCcEEEEecC--------CC--------HH
Q 022194           87 T-HLLG--------TGEEIVAGDDLYGGTDRLLSRVTP-----------KTGVVVKRVNT--------CD--------LD  130 (301)
Q Consensus        87 ~-~~~~--------~g~~Vlv~~~~y~~~~~~~~~~~~-----------~~g~~~~~~~~--------~d--------~~  130 (301)
                      + .+..        ++|+|++.+|.||+..........           ..++....++.        .|        ++
T Consensus       127 l~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~  206 (449)
T 3a8u_X          127 VKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALAD  206 (449)
T ss_dssp             HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHH
Confidence            3 3332        679999999999986432111111           12344444432        14        88


Q ss_pred             HHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CccccCc---c--CCCCcEEEe
Q 022194          131 EVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSRP---L--ELGADIVMH  196 (301)
Q Consensus       131 ~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~-~~~~~~~---~--~~~~di~~~  196 (301)
                      +++++++    +++++|+++..+|++|.+.+    +++|.++|++||+++|+||+|+ .+.....   .  ....|++  
T Consensus       207 ~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--  284 (449)
T 3a8u_X          207 ELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--  284 (449)
T ss_dssp             HHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--
T ss_pred             HHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--
Confidence            8988886    46677777766678998877    9999999999999999999995 4332211   1  1234654  


Q ss_pred             cccccccCCCC-ceeeEEEEcchhHHHHHHHh---------hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHH
Q 022194          197 SATKFIAGHSD-VMAGVLAVKGERLAKELYFL---------QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKI  264 (301)
Q Consensus       197 S~sK~~~g~~g-~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l  264 (301)
                      |+||++++  | ++.|++++++ .+.+.+...         ........++..++++..+++.+.  +..++..++.+++
T Consensus       285 s~sK~l~~--G~~~~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l  361 (449)
T 3a8u_X          285 CIAKQVTN--GAIPMGAVIAST-EIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHF  361 (449)
T ss_dssp             EECGGGGT--TSSCCEEEEEEH-HHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             EEcccccC--CCCceEEEEECH-HHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            88999964  5 7789988874 555554432         112234456777767666666543  3567777778888


Q ss_pred             HHHHHhC
Q 022194          265 AEFLASH  271 (301)
Q Consensus       265 ~~~l~~~  271 (301)
                      ++.|++.
T Consensus       362 ~~~L~~l  368 (449)
T 3a8u_X          362 EKALHGI  368 (449)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            8888763

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.84  E-value=3.8e-20  Score=167.29  Aligned_cols=207  Identities=22%  Similarity=0.171  Sum_probs=142.9

Q ss_pred             HHHH-HHHHhhcCCCceEE-ecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhh-hcccCCcEEEEecC------C
Q 022194           58 DALE-SLLAKLDKADRALC-FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR-VTPKTGVVVKRVNT------C  127 (301)
Q Consensus        58 ~~l~-~~l~~~~~~~~~i~-~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~-~~~~~g~~~~~~~~------~  127 (301)
                      +++. +++++++|.+...+ ++||++|+. ++..++++||+|++++|.|+++...... .....+..+..++.      .
T Consensus        93 e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (447)
T 3h7f_A           93 ENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLI  172 (447)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSC
T ss_pred             HHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCc
Confidence            4455 89999999987666 899998885 6777899999999999998773210000 01112334444442      3


Q ss_pred             CHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcc-----ccCccCCCCcEEEeccccc
Q 022194          128 DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATKF  201 (301)
Q Consensus       128 d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~-----~~~~~~~~~di~~~S~sK~  201 (301)
                      |++++++++. .++++|++++++||++.  ++++|+++|+++|+++|+|++|..+.     ...+. .++|+++.|+||+
T Consensus       173 d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~  249 (447)
T 3h7f_A          173 DMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKT  249 (447)
T ss_dssp             CHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGG
T ss_pred             CHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcC
Confidence            8899999885 47889999999998876  99999999999999999999986442     22222 3579999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhhcC-CCCCHH---hHHHH-Hcccc-cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPF---DCWIC-LRGVK-TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~-~~~l~-~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++||   ++|++++++ .+.+.+........ .+....   +..++ ....+ .+.++.+++.++++++.+.|++.
T Consensus       250 l~G~---~gG~i~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (447)
T 3h7f_A          250 LGGG---RSGLIVGKQ-QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP  321 (447)
T ss_dssp             GCCC---SCEEEEECG-GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred             CCCC---CeEEEEECH-HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9765   569998875 45554443322222 122221   11111 22222 45677888999999999998765

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.84  E-value=3.7e-21  Score=173.26  Aligned_cols=252  Identities=15%  Similarity=0.123  Sum_probs=162.2

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~~~~~i~~~sG~~ai~~~~   87 (301)
                      ..++||.++.  +++|. ++|.+........+  ....+.   +..+.+.++++++++++ +.+++++++||++|+.+++
T Consensus        56 ~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~--~~~~~~---~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al  129 (434)
T 2epj_A           56 ARIVDLVLAYGPLILGH-KHPRVLEAVEEALA--RGWLYG---APGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAI  129 (434)
T ss_dssp             CEEEESSGGGTTCTTCB-TCHHHHHHHHHHHH--TCSCCS---SCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHH
T ss_pred             CEEEEcccchhcccCCC-CCHHHHHHHHHHHH--hCCCCC---CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH
Confidence            3688997332  57888 55555544322211  111111   23455889999999998 7778888899999986444


Q ss_pred             hc---cCCCCeEEEcCCCCccHHHHHhhhc----------ccCCc------EEEEecCCCHHHHHhhcC---CCceEEEE
Q 022194           88 HL---LGTGEEIVAGDDLYGGTDRLLSRVT----------PKTGV------VVKRVNTCDLDEVASAIG---PWTKLVWV  145 (301)
Q Consensus        88 ~~---~~~g~~Vlv~~~~y~~~~~~~~~~~----------~~~g~------~~~~~~~~d~~~l~~~l~---~~~~~v~i  145 (301)
                      .+   +.++++|++.++.||++........          ...|+      .+..++..|+++++++++   +++++|++
T Consensus       130 ~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~  209 (434)
T 2epj_A          130 RLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIV  209 (434)
T ss_dssp             HHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEE
T ss_pred             HHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEE
Confidence            43   4556889999999998642110000          11232      355666679999999886   36778888


Q ss_pred             eCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccccCc---cCCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSRP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       146 ~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~~~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      +..++++|.+.+    +++|.++|++||+++|+||+|+.......   ...+....+.|+||++++  |++.|++++++ 
T Consensus       210 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~s~sK~l~~--G~~~G~v~~~~-  286 (434)
T 2epj_A          210 EPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYFNIEGDIIVLGKIIGG--GFPVGAVAGSR-  286 (434)
T ss_dssp             CSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHHTCCCSEEEEEGGGGT--TSSCEEEEECH-
T ss_pred             eCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHhCCCCCeeeecchhcC--CcceeeeeecH-
Confidence            877778999887    99999999999999999999983211111   111222334589999954  67899999875 


Q ss_pred             hHHHHHHHhh---hhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhC
Q 022194          219 RLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       219 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+.+.+....   ...+...++..++++...++.+.  +..++..++.+++.+.|++.
T Consensus       287 ~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (434)
T 2epj_A          287 EVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEV  344 (434)
T ss_dssp             HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            4444332211   11233567777777666665543  34566667777777777653

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.84  E-value=7.5e-21  Score=171.94  Aligned_cols=252  Identities=16%  Similarity=0.097  Sum_probs=150.5

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCC-C-CchHHHHHHHHHhhcC--CCceEEecchHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-G-NPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g-~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~   84 (301)
                      ..++||.++  +.++|..+ |.+......+.+  . ..+ +... + .+.+.+++++++++++  .+++++++||++|+.
T Consensus        44 ~~ylD~~~~~~~~~lG~~~-p~v~~A~~~~~~--~-~~~-~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~  118 (448)
T 3dod_A           44 KEYYDGFSSVWLNVHGHRK-KELDDAIKKQLG--K-IAH-STLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAME  118 (448)
T ss_dssp             CEEEETTHHHHTCSSCBSC-HHHHHHHHHHHT--T-CSC-CCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHH
T ss_pred             CEEEECCcchhhccCCCCC-HHHHHHHHHHHH--h-ccC-ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHH
Confidence            468999844  67899864 444443222211  1 111 2122 2 3458999999999984  457888888999986


Q ss_pred             -HHHhccC----C----CCeEEEcCCCCccHHHHHhhhcc---------cCCcEEEEecCC----------------CHH
Q 022194           85 -AVTHLLG----T----GEEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTC----------------DLD  130 (301)
Q Consensus        85 -~~~~~~~----~----g~~Vlv~~~~y~~~~~~~~~~~~---------~~g~~~~~~~~~----------------d~~  130 (301)
                       ++..+..    +    +|+|++.++.||++.........         .....+..++..                |++
T Consensus       119 ~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  198 (448)
T 3dod_A          119 IALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLR  198 (448)
T ss_dssp             HHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHH
Confidence             4444433    3    49999999999987532111100         001122333332                278


Q ss_pred             HHHhhcC---CCceEEEEeCCC-CCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCCCCcEEEecc
Q 022194          131 EVASAIG---PWTKLVWVESPT-NPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELGADIVMHSA  198 (301)
Q Consensus       131 ~l~~~l~---~~~~~v~i~~~~-np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~~~di~~~S~  198 (301)
                      ++++++.   +++++|+++.++ |++|...+    +++|+++|++||+++|+||+|+.. ...   .....+....+.++
T Consensus       199 ~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~  278 (448)
T 3dod_A          199 ELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAA  278 (448)
T ss_dssp             HHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE
T ss_pred             HHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEe
Confidence            8888886   567888888887 88887765    999999999999999999998732 111   11223433345568


Q ss_pred             cccccCCCC-ceeeEEEEcchhHHHHHHH-------hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHH
Q 022194          199 TKFIAGHSD-VMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFL  268 (301)
Q Consensus       199 sK~~~g~~g-~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l  268 (301)
                      +|++++  | ++.|++++++ .+.+.+..       .....+...++..+++++.+++.+.  +..++..++.+++++.|
T Consensus       279 sK~l~~--G~~~ig~v~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l  355 (448)
T 3dod_A          279 GKGITG--GYLPIAVTFATE-DIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLL  355 (448)
T ss_dssp             CGGGGT--TSSCCEEEEEEH-HHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             cccccC--CcCceEEEEECH-HHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            999954  6 5889998875 45554332       2223345567777777777776542  33556666666666666


Q ss_pred             Hh
Q 022194          269 AS  270 (301)
Q Consensus       269 ~~  270 (301)
                      ++
T Consensus       356 ~~  357 (448)
T 3dod_A          356 QD  357 (448)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.84  E-value=3.2e-20  Score=168.33  Aligned_cols=259  Identities=13%  Similarity=0.037  Sum_probs=159.2

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCC--CCchHHHHHHHHHhhcC--CCceEEecchHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~   84 (301)
                      .+++||+++  +.++|..++.+..+.. .+..   ...+.+...  ..+.+.+++++++++++  .+++++++||++|+.
T Consensus        51 ~~~lD~~~~~~~~~lG~~~p~v~~A~~-~~~~---~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~  126 (460)
T 3gju_A           51 RKSIDAFAGLYCVNVGYGRQKIADAIA-TQAK---NLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANE  126 (460)
T ss_dssp             CEEEETTHHHHTCTTCBCCHHHHHHHH-HHHH---HHSCCCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHH
T ss_pred             CEEEECCcchhhccCCCCCHHHHHHHH-HHHH---hccccccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHH
Confidence            468999844  4678876444443321 2111   011122222  23458999999999874  457788888999986


Q ss_pred             HHH-hcc--------CCCCeEEEcCCCCccHHHHHhhh---------cccC--CcEEEEecC----CC------------
Q 022194           85 AVT-HLL--------GTGEEIVAGDDLYGGTDRLLSRV---------TPKT--GVVVKRVNT----CD------------  128 (301)
Q Consensus        85 ~~~-~~~--------~~g~~Vlv~~~~y~~~~~~~~~~---------~~~~--g~~~~~~~~----~d------------  128 (301)
                      +++ .+.        .++++|++.++.||++.......         ....  ++....++.    ++            
T Consensus       127 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~  206 (460)
T 3gju_A          127 TNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHC  206 (460)
T ss_dssp             HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHH
Confidence            443 443        35689999999999875332111         1111  233333222    12            


Q ss_pred             HHHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-cccC---ccCCCCcEEEe
Q 022194          129 LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLSR---PLELGADIVMH  196 (301)
Q Consensus       129 ~~~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~~---~~~~~~di~~~  196 (301)
                      ++++++++.    +++++|+++.++|++|.+.+    +++|+++|++||+++|+||+|+.. ..+.   ....+....+.
T Consensus       207 ~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~  286 (460)
T 3gju_A          207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLI  286 (460)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee
Confidence            588888876    56788888888888888665    999999999999999999998732 2221   11223333345


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHHh-------hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEF  267 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~  267 (301)
                      ++||++++ +.++.|++++++ .+.+.+...       ....++..++..+++++.+++.+.  +..++..++.+++++.
T Consensus       287 t~sK~l~g-G~~~lg~v~~~~-~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~  364 (460)
T 3gju_A          287 TIAKGLTS-AYAPLSGVIVAD-RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAE  364 (460)
T ss_dssp             EECGGGTT-TSSCCEEEEEEH-HHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             eeehhhcC-CCCCeEEEEECH-HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            68999954 336789998875 455544321       233445667777777777766432  2345555555555555


Q ss_pred             H----HhCCCcc
Q 022194          268 L----ASHPRVK  275 (301)
Q Consensus       268 l----~~~~~v~  275 (301)
                      |    ++++.+.
T Consensus       365 l~~~l~~~~~~~  376 (460)
T 3gju_A          365 LAKAVGGHKNVG  376 (460)
T ss_dssp             HHHHHTTSTTEE
T ss_pred             HHHHHhcCCCeE
Confidence            4    4455443

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.84  E-value=5.2e-20  Score=163.94  Aligned_cols=205  Identities=20%  Similarity=0.153  Sum_probs=140.2

Q ss_pred             HHHHHHhhcCCCceE-EecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC--cEEEEecC------CCH
Q 022194           60 LESLLAKLDKADRAL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVNT------CDL  129 (301)
Q Consensus        60 l~~~l~~~~~~~~~i-~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g--~~~~~~~~------~d~  129 (301)
                      +++++++++|.+... ++++|++++. ++..++++||+|++++|.|+.+...+ ......|  .++..++.      .|+
T Consensus        74 ~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d~  152 (405)
T 2vi8_A           74 ARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-SPVNFSGVQYNFVAYGVDPETHVIDY  152 (405)
T ss_dssp             HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTT-CTTSHHHHHSEEEEECBCTTTCSBCH
T ss_pred             HHHHHHHHhCCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhccc-chhhhccceeEEEecccccccCCcCH
Confidence            446999999988554 4689998885 66667899999999999998774100 0011222  36666653      278


Q ss_pred             HHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-ccC---CCCcEEEecccccccC
Q 022194          130 DEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLE---LGADIVMHSATKFIAG  204 (301)
Q Consensus       130 ~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~---~~~di~~~S~sK~~~g  204 (301)
                      +++++++.+ ++++|++ +++| .|...++++|.++|+++|+++|+||+|+.+.... ...   .+.|++++|+||+++|
T Consensus       153 ~~l~~~i~~~~~~~v~~-~~~~-~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g  230 (405)
T 2vi8_A          153 DDVREKARLHRPKLIVA-AAAA-YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRG  230 (405)
T ss_dssp             HHHHHHHHHHCCSEEEE-CCSS-CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCC
T ss_pred             HHHHHHHHhcCCeEEEE-eCCC-CCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCC
Confidence            999999875 7888887 4444 3566789999999999999999999998543221 111   1578999999999976


Q ss_pred             CCCceeeEEEEcchhHHHHHHHhhhhcC-CCCCHHhHHHHHcccc-----cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          205 HSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.|   |+++++ +.+.+.+........ .+.++....++..+++     .+.+..++..++++++.+.|+++
T Consensus       231 ~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  299 (405)
T 2vi8_A          231 PRG---GMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE  299 (405)
T ss_dssp             CSC---EEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCC---eEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            654   888887 456555544332222 2233433333333322     34667788888889999999876

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.84  E-value=6.1e-20  Score=167.39  Aligned_cols=211  Identities=16%  Similarity=0.095  Sum_probs=146.1

Q ss_pred             HHHHHHHHHhhcCCCc-----eEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhh----hcccCC--cEEEEe
Q 022194           57 RDALESLLAKLDKADR-----ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR----VTPKTG--VVVKRV  124 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~-----~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~----~~~~~g--~~~~~~  124 (301)
                      ++++++++++++|.+.     .+++++|++++. ++.++++|||+|+++++.|+++...+..    .+...|  +.++.+
T Consensus        92 e~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~  171 (483)
T 1rv3_A           92 ETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAY  171 (483)
T ss_dssp             HHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEE
T ss_pred             HHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEEC
Confidence            3455589999999872     388899997775 5778899999999999999887532110    112222  445554


Q ss_pred             cC------CCHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-----CccCCCCc
Q 022194          125 NT------CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGAD  192 (301)
Q Consensus       125 ~~------~d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~~~~~~d  192 (301)
                      +.      .|++++++++. .++++|++ +++|++ .+.|+++|+++|+++|+++++|++|..+...     .+.. ++|
T Consensus       172 ~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~d  248 (483)
T 1rv3_A          172 KVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HCH  248 (483)
T ss_dssp             CBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCS
T ss_pred             ccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CCc
Confidence            21      28999999998 78999999 888888 8889999999999999999999998754322     2222 689


Q ss_pred             EEEecccccccCCCCceeeEEEEcchh--------------HHHHHHHhhh-hcCCCCCHHhHHH---HHccc--ccHHH
Q 022194          193 IVMHSATKFIAGHSDVMAGVLAVKGER--------------LAKELYFLQN-AEGSGLAPFDCWI---CLRGV--KTMAL  252 (301)
Q Consensus       193 i~~~S~sK~~~g~~g~~~g~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~---~~~~l--~~~~~  252 (301)
                      ++++|+||++.||   ++|+++++++.              +.+.+..... ....+.......+   ++...  ..+.+
T Consensus       249 iv~~s~~K~l~Gp---rgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~  325 (483)
T 1rv3_A          249 VVTTTTHKTLRGC---RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKE  325 (483)
T ss_dssp             EEEEESSGGGCCC---SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred             EEEecCcccCCCC---CceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHH
Confidence            9999999999776   46999988652              2232222111 1112222222222   22221  23567


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCc
Q 022194          253 RVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      +.++..++++++.+.|+++ ++
T Consensus       326 ~~~~~~~~~~~l~~~L~~~-g~  346 (483)
T 1rv3_A          326 YQRQVVANCRALSAALVEL-GY  346 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHHHHHhc-CC
Confidence            7788899999999999886 44

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.84  E-value=4.1e-20  Score=166.86  Aligned_cols=155  Identities=14%  Similarity=0.130  Sum_probs=116.8

Q ss_pred             chHHHHHHHHHhhcCCCceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC--C---
Q 022194           55 PTRDALESLLAKLDKADRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--C---  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~--~---  127 (301)
                      ...+++++++++ +|.++.+++++| ++++. ++.+++++||+|+++++.|+++...+    ...|.++++++.  +   
T Consensus        57 ~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~----~~~G~~~~~v~~~~~~~~  131 (446)
T 2x3l_A           57 EVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHAL----DISQQEGHFIETHQSPLT  131 (446)
T ss_dssp             SHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHH----HHHTCCEEECEEEECTTT
T ss_pred             hHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHH----HHcCCeEEEEeCeecccc
Confidence            458899999999 998877777777 58885 66777899999999999999987544    335666666665  2   


Q ss_pred             ------CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcc-c----cCccCCCCcEEEe
Q 022194          128 ------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-L----SRPLELGADIVMH  196 (301)
Q Consensus       128 ------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~-~----~~~~~~~~di~~~  196 (301)
                            |++++   +.+++++|++++ .|++|.+.|+++|+++|+++|+++|+||+|+... +    ......++|+++.
T Consensus       132 ~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~  207 (446)
T 2x3l_A          132 NHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQ  207 (446)
T ss_dssp             SSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEE
T ss_pred             CcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEE
Confidence                  34555   456789999999 5569999999999999999999999999998622 1    1233457899999


Q ss_pred             cccccccCCCCceeeEEEEcchhH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERL  220 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~  220 (301)
                      |+||+++++.+  +|+++++++.+
T Consensus       208 S~~K~l~~~~g--~g~l~~~~~~i  229 (446)
T 2x3l_A          208 SFHKTLPALTM--GSVLYIHKNAP  229 (446)
T ss_dssp             CHHHHSSSCTT--CEEEEEETTCT
T ss_pred             CCccccccccc--cEEEEEcCCcC
Confidence            99998777655  58888876543

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.83  E-value=1.5e-20  Score=168.95  Aligned_cols=247  Identities=15%  Similarity=0.091  Sum_probs=159.6

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~~~~~i~~~sG~~ai~~~~   87 (301)
                      .+++||.++.  .++|.. +|.+......+.+  ....+.   +..+...++++.+++.+ +.+++++++||++|+..++
T Consensus        53 ~~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~--~~~~~~---~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai  126 (429)
T 3k28_A           53 NEYIDYVLSWGPLIHGHA-NDRVVEALKAVAE--RGTSFG---APTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSAL  126 (429)
T ss_dssp             CEEEESCGGGTTCTTCBS-CHHHHHHHHHHHH--HCSCCS---SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHH
T ss_pred             CEEEECCCChhhcccCCC-CHHHHHHHHHHHh--hCcCcC---CCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHH
Confidence            4789998432  468874 4544443222211  011111   23456889999999988 5667888888999986443


Q ss_pred             -hcc--CCCCeEEEcCCCCccHHHHHhhhcccCC-------------------cEEEEecCCCHHHHHhhcC---CCceE
Q 022194           88 -HLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTG-------------------VVVKRVNTCDLDEVASAIG---PWTKL  142 (301)
Q Consensus        88 -~~~--~~g~~Vlv~~~~y~~~~~~~~~~~~~~g-------------------~~~~~~~~~d~~~l~~~l~---~~~~~  142 (301)
                       .+.  .++++|++.++.||+....   .....+                   ..+..++.+|+++++++++   +++++
T Consensus       127 ~~a~~~~~~~~vi~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~  203 (429)
T 3k28_A          127 RLARGYTGRNKILKFIGCYHGHGDS---LLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIAC  203 (429)
T ss_dssp             HHHHHHHTCCEEEEEETCCCCSCGG---GCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEE
T ss_pred             HHHHHhhCCCEEEEECCCcCCCcHH---HHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEE
Confidence             332  3678999999999876421   111111                   1345556668999998886   46778


Q ss_pred             EEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccccC----ccCCCCcEEEecccccccCCCCceeeEEE
Q 022194          143 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSR----PLELGADIVMHSATKFIAGHSDVMAGVLA  214 (301)
Q Consensus       143 v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~~----~~~~~~di~~~S~sK~~~g~~g~~~g~~~  214 (301)
                      |+++.+++++|.+.+    +++|.++|++||+++|+||+|... ...    ....+....+.++||++++  |++.|+++
T Consensus       204 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~--G~~iG~~~  280 (429)
T 3k28_A          204 VIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGG--GLPVGAYG  280 (429)
T ss_dssp             EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGT--TSCCEEEE
T ss_pred             EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcC--CCCeEEEE
Confidence            888877777888877    999999999999999999999643 211    1112333345579999953  67899998


Q ss_pred             EcchhHHHHHHHhh---hhcCCCCCHHhHHHHHcccccH-HHHHHHHHHHHHHHHHHHHh
Q 022194          215 VKGERLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTM-ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       215 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~l~~  270 (301)
                      +++ .+.+.+....   ...+.+.++..++++..+++.. ++.++++.++.+++.+.|++
T Consensus       281 ~~~-~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~l~~~L~~  339 (429)
T 3k28_A          281 GKA-EIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRK  339 (429)
T ss_dssp             ECH-HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcH-HHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            875 4544332211   2233456777766666555432 55667777777778777765

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.83  E-value=1.7e-20  Score=171.80  Aligned_cols=216  Identities=14%  Similarity=0.137  Sum_probs=145.8

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecchHHHHH-HHHh----cc---------CC------CC-eEEEcCCCCccHHHHHhh
Q 022194           57 RDALESLLAKLDKAD---RALCFTSGMAALA-AVTH----LL---------GT------GE-EIVAGDDLYGGTDRLLSR  112 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~sG~~ai~-~~~~----~~---------~~------g~-~Vlv~~~~y~~~~~~~~~  112 (301)
                      .+++++++++++|.+   +.+++++|++|+. ++..    ++         .+      |+ .|+++++.|+++...+. 
T Consensus       142 e~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~-  220 (497)
T 2qma_A          142 EQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSAS-  220 (497)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHH-
T ss_pred             HHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHH-
Confidence            445677799999873   5667777788875 3333    12         12      45 78999899998875442 


Q ss_pred             hcccCCc-EEEEecCC-----CHHHHHhhcCCC----c--eEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCC
Q 022194          113 VTPKTGV-VVKRVNTC-----DLDEVASAIGPW----T--KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS  180 (301)
Q Consensus       113 ~~~~~g~-~~~~~~~~-----d~~~l~~~l~~~----~--~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~  180 (301)
                      ... .|. +++.++.+     |+++++++++++    +  .+|+++.++|++|.+.|+++|+++|++||+|+++|++|+.
T Consensus       221 ~~g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~  299 (497)
T 2qma_A          221 WMG-LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGG  299 (497)
T ss_dssp             HTT-SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGG
T ss_pred             HcC-CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhH
Confidence            121 133 67777765     789999888642    3  4888899999999999999999999999999999999987


Q ss_pred             ccccCcc-----C-CCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh----hhc---C----CC------CCH
Q 022194          181 PVLSRPL-----E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----NAE---G----SG------LAP  237 (301)
Q Consensus       181 ~~~~~~~-----~-~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~----~~~---~----~~------~~~  237 (301)
                      +......     . .++|+++.|+||++++|.+  .|+++.+++...+.+....    ...   .    ..      ...
T Consensus       300 ~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~--~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~a  377 (497)
T 2qma_A          300 ALILSSHKSRLKGVERAHSISVDFHKLFYQTIS--CGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDA  377 (497)
T ss_dssp             GGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSS--CEEEEESCGGGGGGGCC--------------------CCSCCCTH
T ss_pred             HHHhCcchHhhcCcccCCEEEEcchhccCCCcc--eEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhH
Confidence            7653221     1 2579999999999987754  5888887665332211000    000   0    00      012


Q ss_pred             HhHHHHHccc--ccHHHHHHHHHHHHHHHHHHHHhCCCcce
Q 022194          238 FDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKK  276 (301)
Q Consensus       238 ~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~v~~  276 (301)
                      ...++.++.+  +.+.+..++..++++++.+.|++.+++..
T Consensus       378 l~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~  418 (497)
T 2qma_A          378 LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFEL  418 (497)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence            2233333333  33567778888999999999998876643

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.83  E-value=5e-20  Score=165.74  Aligned_cols=253  Identities=14%  Similarity=0.095  Sum_probs=155.5

Q ss_pred             ceeeecCCCCC--CCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC--CceEEecchHHHHHHH
Q 022194           11 TLLMNFSNEFD--PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~~~--~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~--~~~i~~~sG~~ai~~~   86 (301)
                      ..++||.++..  ++|. ++|.+........+  . ..+....+..+.+.++++.+++.++.  +++++++||++|+.++
T Consensus        43 ~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~--~-~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a  118 (433)
T 1zod_A           43 RAILDFTSGQMSAVLGH-CHPEIVSVIGEYAG--K-LDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAA  118 (433)
T ss_dssp             CEEEETTHHHHTCTTCB-TCHHHHHHHHHHHH--H-CCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHH
T ss_pred             CEEEEcccchhccccCC-CCHHHHHHHHHHHH--h-CcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHH
Confidence            46889863332  6786 45555443222111  0 11111112234588999999999864  4677777889998644


Q ss_pred             Hhc-c--CCCCeEEEcCCCCccHHHHHhhhc----------ccCCcEEEEecC------C---------CHHHHHhhcC-
Q 022194           87 THL-L--GTGEEIVAGDDLYGGTDRLLSRVT----------PKTGVVVKRVNT------C---------DLDEVASAIG-  137 (301)
Q Consensus        87 ~~~-~--~~g~~Vlv~~~~y~~~~~~~~~~~----------~~~g~~~~~~~~------~---------d~~~l~~~l~-  137 (301)
                      +.+ .  ..+++|++.+|.||+.........          ...++....++.      .         |+++++++++ 
T Consensus       119 ~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~  198 (433)
T 1zod_A          119 IRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR  198 (433)
T ss_dssp             HHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHh
Confidence            432 2  346899999999998643221111          112444444432      1         3888988886 


Q ss_pred             ---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-ccccCc---cCCCCcEEEecccccccCCC
Q 022194          138 ---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP---LELGADIVMHSATKFIAGHS  206 (301)
Q Consensus       138 ---~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~~~---~~~~~di~~~S~sK~~~g~~  206 (301)
                         +++++|+++..+||+|...+    +++|+++|++||+++|+||+|+. +.....   ...+.+..+.|+||++++  
T Consensus       199 ~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~--  276 (433)
T 1zod_A          199 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGA--  276 (433)
T ss_dssp             HCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHT--
T ss_pred             cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccC--
Confidence               46677777666688997655    99999999999999999999983 222211   111333334589999964  


Q ss_pred             CceeeEEEEcchhHHHHHHHhhhh--cCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          207 DVMAGVLAVKGERLAKELYFLQNA--EGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       207 g~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      |++.|++++++ .+.+.+......  .....++..+.++..+++.+.  +..+++.++.+++.+.|++
T Consensus       277 G~~ig~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~  343 (433)
T 1zod_A          277 GLPLAAIVTSA-AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLD  343 (433)
T ss_dssp             TSSCEEEEECH-HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeeEEEEhH-HHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            68899999875 555555442222  334456777766666665432  2445666666677766654

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.83  E-value=1.5e-19  Score=172.22  Aligned_cols=210  Identities=13%  Similarity=0.066  Sum_probs=151.4

Q ss_pred             hHHHHHHHHHhhcCCCceEEecchH-HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------
Q 022194           56 TRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~~~i~~~sG~-~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------  127 (301)
                      ...++++.+++++|.++.+++++|+ +++. ++.+++++||+|+++.+.|.++...    +...|+++++++..      
T Consensus       206 ~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~----~~~~G~~~v~v~~~~~~~g~  281 (755)
T 2vyc_A          206 AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQG----LMLTGAKPVYMVPSRNRYGI  281 (755)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HHHHCCEEEEECCCBCTTSC
T ss_pred             HHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHH----HHHcCCEEEEEeCCCCcccc
Confidence            3788999999999999888888886 7774 7778899999999999999988744    34468888887642      


Q ss_pred             ---------CHHHHHhhcCC--Cce--------EEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc----
Q 022194          128 ---------DLDEVASAIGP--WTK--------LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (301)
Q Consensus       128 ---------d~~~l~~~l~~--~~~--------~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~----  184 (301)
                               |++++++++++  +++        ++++++| |++|.+.|+++|+++|+++|+++++|++|+.+...    
T Consensus       282 ~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~  360 (755)
T 2vyc_A          282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIY  360 (755)
T ss_dssp             BCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGG
T ss_pred             ccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCccc
Confidence                     78999988853  343        8899998 78999999999999999999999999999754221    


Q ss_pred             ---CccCCC--CcE------EEecccccccCCCCceeeEEEEcch--hH-HHHHHHhhhhc-CCCCCHHhHHHHHcccc-
Q 022194          185 ---RPLELG--ADI------VMHSATKFIAGHSDVMAGVLAVKGE--RL-AKELYFLQNAE-GSGLAPFDCWICLRGVK-  248 (301)
Q Consensus       185 ---~~~~~~--~di------~~~S~sK~~~g~~g~~~g~~~~~~~--~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-  248 (301)
                         .+. .+  +|+      ++.|+||+++|+.+  +|+++.+++  .+ ...+....... ..+.+....+.+..+++ 
T Consensus       361 ~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~~--g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~  437 (755)
T 2vyc_A          361 ADHYAM-RGEPGDHNGPTVFATHSTHKLLNALSQ--ASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSM  437 (755)
T ss_dssp             TTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCTT--CEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHH
T ss_pred             CCcchh-cCCcCCccCCCeEEEECccccccCcCC--eeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence               111 35  565      99999999977653  577777654  22 12222222222 23333333333322322 


Q ss_pred             --c--HHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          249 --T--MALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       249 --~--~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                        .  ..++.++..++++++++.|+++++
T Consensus       438 l~~~gg~~~~~~~~~~a~~~r~~L~~l~~  466 (755)
T 2vyc_A          438 MDGNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_dssp             HSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence              2  346778888889999999987654

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.83  E-value=1.2e-20  Score=169.38  Aligned_cols=251  Identities=15%  Similarity=0.115  Sum_probs=159.5

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~~~~~i~~~sG~~ai~~~~   87 (301)
                      ..++||.++.  +++|. ++|.+........+  ....+.   +..+.+.++++++++++ +.+++++++||++|+.+++
T Consensus        52 ~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~--~~~~~~---~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al  125 (424)
T 2e7u_A           52 NRYLDYVMSWGPLILGH-AHPKVLARVRETLE--RGLTFG---APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSAL  125 (424)
T ss_dssp             CEEEESSGGGTTCTTCB-TCHHHHHHHHHHHH--TCSCCS---SCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHH
T ss_pred             CEEEEccccccccccCC-CCHHHHHHHHHHHH--hCCCCC---CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH
Confidence            3688997332  68898 56655544322211  111111   22345899999999998 6677888888999986444


Q ss_pred             hc---cCCCCeEEEcCCCCccHHHHHhhhc----------ccCCc------EEEEecCCCHHHHHhhcC---CCceEEEE
Q 022194           88 HL---LGTGEEIVAGDDLYGGTDRLLSRVT----------PKTGV------VVKRVNTCDLDEVASAIG---PWTKLVWV  145 (301)
Q Consensus        88 ~~---~~~g~~Vlv~~~~y~~~~~~~~~~~----------~~~g~------~~~~~~~~d~~~l~~~l~---~~~~~v~i  145 (301)
                      .+   +.++++|++.+|.||++........          ...|+      .+..++..|+++++++++   +++++|++
T Consensus       126 ~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~  205 (424)
T 2e7u_A          126 RLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIF  205 (424)
T ss_dssp             HHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEE
T ss_pred             HHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEE
Confidence            32   4456889999999998642110100          01232      355666679999998886   45666666


Q ss_pred             eCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCccccCc---cCCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSRP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       146 ~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~~~---~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      +..++++|.+.+    +++|.++ ++||+++|+||+|+.......   ...+....+.|+||++++  |++.|++++++ 
T Consensus       206 ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~s~sK~l~~--G~~~G~~~~~~-  281 (424)
T 2e7u_A          206 EPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPDLVTLGKILGG--GLPAAAYAGRR-  281 (424)
T ss_dssp             CSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEEECGGGGT--TSSCEEEEECH-
T ss_pred             eCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcchhhhhhhhhC--CcceEEEEEcH-
Confidence            554445898876    9999999 999999999999983311111   111222224489999953  68899999875 


Q ss_pred             hHHHHHHHhh---hhcCCCCCHHhHHHHHcccccHH---HHHHHHHHHHHHHHHHHHhC
Q 022194          219 RLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       219 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .+.+.+....   ...+...++..++++...++.+.   +..+++.++.+++.+.|++.
T Consensus       282 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~  340 (424)
T 2e7u_A          282 EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEV  340 (424)
T ss_dssp             HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            4544333211   11233556777777666665543   35667777777888777653

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.83  E-value=3.4e-20  Score=166.70  Aligned_cols=251  Identities=14%  Similarity=0.116  Sum_probs=153.6

Q ss_pred             ceeeecCCCC--CCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~~~~~i~~~sG~~ai~~~~   87 (301)
                      .+++||.++.  ..+|..+ |.+......+.+  ....+.|   ..+...++++++++.+ +.+++++++||++|+..++
T Consensus        53 ~~ylD~~~~~~~~~lG~~~-p~v~~A~~~~~~--~~~~~~~---~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al  126 (429)
T 4e77_A           53 KAYIDYVGSWGPMILGHNH-PAIRQAVIEAVE--RGLSFGA---PTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAI  126 (429)
T ss_dssp             CEEEESSGGGTTCTTCBTC-HHHHHHHHHHHT--TCSCCSS---CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHH
T ss_pred             CEEEECCCchhccccCCCC-HHHHHHHHHHHH--hCcccCC---CCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHH
Confidence            4789997433  4577654 444433222211  1111222   3456889999999988 4567888888999986444


Q ss_pred             hc---cCCCCeEEEcCCCCccHHHHHh----------------hhcccCCcEEEEecCCCHHHHHhhcC---CCceEEEE
Q 022194           88 HL---LGTGEEIVAGDDLYGGTDRLLS----------------RVTPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWV  145 (301)
Q Consensus        88 ~~---~~~g~~Vlv~~~~y~~~~~~~~----------------~~~~~~g~~~~~~~~~d~~~l~~~l~---~~~~~v~i  145 (301)
                      .+   ..++++|++.++.||+......                .........+..++..|+++++++++   +++++|++
T Consensus       127 ~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~  206 (429)
T 4e77_A          127 RLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIV  206 (429)
T ss_dssp             HHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEE
T ss_pred             HHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEE
Confidence            32   2457889999999998753110                00011112455666678999998886   35666666


Q ss_pred             eCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc---cccCccCCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP---VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       146 ~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~---~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      +..++++|.+.+    +++|.++|++||+++|+||+|+..   ........+.+..+.|+||.++  +|++.|++++++ 
T Consensus       207 ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~t~sK~~~--~G~~~G~~~~~~-  283 (429)
T 4e77_A          207 EPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLTCLGKIIG--GGMPVGAFGGRR-  283 (429)
T ss_dssp             CSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEEEEEGGGG--TTSCCEEEEECH-
T ss_pred             CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCeeeeccccc--CCCCeEEEEECH-
Confidence            655555677776    999999999999999999999832   2111112233333458999996  367899998864 


Q ss_pred             hHHHHHHHh---hhhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHh
Q 022194          219 RLAKELYFL---QNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       219 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~  270 (301)
                      .+.+.+...   ....+++.++..++++...++.+  ++..++..++.+++++.|++
T Consensus       284 ~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  340 (429)
T 4e77_A          284 EVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRH  340 (429)
T ss_dssp             HHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            444433221   12233456777777766665533  34455666666666666654

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.83  E-value=2.9e-20  Score=168.18  Aligned_cols=254  Identities=16%  Similarity=0.142  Sum_probs=152.5

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~~   85 (301)
                      ..++||.++  ...+|.. +|.+......+.+  ....+.+..+..+.+.+++++++++++   .+++++++||++|+.+
T Consensus        61 ~~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~--~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~  137 (451)
T 3oks_A           61 NRLIDLGSGIAVTTVGNS-APKVVEAVRSQVG--DFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVEN  137 (451)
T ss_dssp             CEEEESSHHHHTCTTCTT-CHHHHHHHHHHHT--TCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHH
T ss_pred             CEEEEcCCCccccccCCC-CHHHHHHHHHHHH--hcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHH
Confidence            468999854  5668865 4444443322211  112222222234558899999999985   3468888999999864


Q ss_pred             HHhc-c--CCCCeEEEcCCCCccHHHHHhhhc----------ccCCcEEEEecCC------------------CHHHHHh
Q 022194           86 VTHL-L--GTGEEIVAGDDLYGGTDRLLSRVT----------PKTGVVVKRVNTC------------------DLDEVAS  134 (301)
Q Consensus        86 ~~~~-~--~~g~~Vlv~~~~y~~~~~~~~~~~----------~~~g~~~~~~~~~------------------d~~~l~~  134 (301)
                      ++.+ .  ..+++|++.++.||++........          ......+..++..                  +++.+++
T Consensus       138 Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  217 (451)
T 3oks_A          138 AVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAIT  217 (451)
T ss_dssp             HHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHH
Confidence            4433 2  245899999999998754322211          1111133444432                  2333333


Q ss_pred             hc----C-CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCCCCcEEEeccccc
Q 022194          135 AI----G-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELGADIVMHSATKF  201 (301)
Q Consensus       135 ~l----~-~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~~~di~~~S~sK~  201 (301)
                      .+    . +++++|+++..++..|.+.+    +++|+++|++||+++|+||+|... ...   .....+....+.|++|+
T Consensus       218 ~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~  297 (451)
T 3oks_A          218 VIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKG  297 (451)
T ss_dssp             HHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGG
T ss_pred             HHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhh
Confidence            33    3 34556666655555566655    999999999999999999998732 211   11222333334489999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      +++  |++.|++++++ .+.+.+.......+++.++..+++++..++.+.  +..++..++.+++++.|++
T Consensus       298 l~~--G~~iG~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  365 (451)
T 3oks_A          298 IAG--GLPLSAVTGRA-EIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGR  365 (451)
T ss_dssp             GGT--TSSCEEEEEEH-HHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhC--CcceEEEEECH-HHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            954  68899998864 455544333444556677888777777766442  2345555555566555543

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.83  E-value=1.2e-19  Score=165.76  Aligned_cols=215  Identities=16%  Similarity=0.167  Sum_probs=151.4

Q ss_pred             HHHHHHHHHhhcCCCc-----------eEEecchHHHHH-HHHhccC---C------CC--------e--EEEcCCCCcc
Q 022194           57 RDALESLLAKLDKADR-----------ALCFTSGMAALA-AVTHLLG---T------GE--------E--IVAGDDLYGG  105 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~-----------~i~~~sG~~ai~-~~~~~~~---~------g~--------~--Vlv~~~~y~~  105 (301)
                      .+++.+++++++|.+.           .+++++||+|+. ++..+..   +      ||        +  |+++.+.|++
T Consensus       115 e~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s  194 (486)
T 1js3_A          115 ETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS  194 (486)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH
T ss_pred             HHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHH
Confidence            4567778889988763           577888888874 4433321   1      32        3  7789999988


Q ss_pred             HHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcCCCc------eEEEEeCCCCCccccccHHHHHHHHHHcCCEEEE
Q 022194          106 TDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWT------KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV  174 (301)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~------~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~  174 (301)
                      +.    ..++..|++++.++.+     |+++|++++.+++      .+|++++++|++|.+.|+++|+++|++||+|+++
T Consensus       195 ~~----~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhv  270 (486)
T 1js3_A          195 VE----RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHV  270 (486)
T ss_dssp             HH----HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred             HH----HHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEE
Confidence            76    5556678899999874     8999999997544      3889999999999999999999999999999999


Q ss_pred             eCCcCCccccCc--c-----CCCCcEEEecccccccCCCCceeeEEEEcchhH-HHHHH----Hhhh-h-----------
Q 022194          175 DNSIMSPVLSRP--L-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELY----FLQN-A-----------  230 (301)
Q Consensus       175 D~~~~~~~~~~~--~-----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~-~~~~~----~~~~-~-----------  230 (301)
                      |++|+.+.+..+  .     ..++|+++.|+||++++|.  ..|+++.+++.. .+.+.    .... .           
T Consensus       271 D~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~--~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~  348 (486)
T 1js3_A          271 DAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF--DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRH  348 (486)
T ss_dssp             ECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS--SCEEEEESCHHHHHGGGC------------CCSCCCGGG
T ss_pred             ehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc--ceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccc
Confidence            999987654321  1     1257999999999997664  468898887653 22210    0000 0           


Q ss_pred             ----cCCCCCHHhHHHHHcc--cccHHHHHHHHHHHHHHHHHHHHhCCCcceE
Q 022194          231 ----EGSGLAPFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKV  277 (301)
Q Consensus       231 ----~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v  277 (301)
                          .+........++++..  .+.+.+..++..++++++.+.|++.+++..+
T Consensus       349 ~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~  401 (486)
T 1js3_A          349 WQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVC  401 (486)
T ss_dssp             SSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEC
T ss_pred             cCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence                0001223334444332  3446777888889999999999988776543

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.83  E-value=2e-19  Score=168.81  Aligned_cols=208  Identities=13%  Similarity=0.053  Sum_probs=154.1

Q ss_pred             hHHHHHHHHHhhcCCCceEEecchH-HHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------
Q 022194           56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~~~i~~~sG~-~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------  127 (301)
                      ...++++.+++++|+++++++++|+ .|+ .++.+++++||+|++++++|.++..    .+...|+++++++..      
T Consensus       196 ~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~----~l~lsGa~pv~v~~~~~~~gi  271 (715)
T 3n75_A          196 PHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTH----LMMMSDVTPIYFRPTRNAYGI  271 (715)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH----HHHHSCCEEEEECCCBCTTCC
T ss_pred             HHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHH----HHHHcCCEEEEEecccccccc
Confidence            3899999999999999999999996 777 4778899999999999999999873    455678888888743      


Q ss_pred             ---------CHHHHHhhcCC--Cce---EEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccc-c------Cc
Q 022194          128 ---------DLDEVASAIGP--WTK---LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-S------RP  186 (301)
Q Consensus       128 ---------d~~~l~~~l~~--~~~---~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~-~------~~  186 (301)
                               |++++++++++  +++   ++++++| |++|.+.|+++|+++|++++  +++||+|+.+.. .      ..
T Consensus       272 ~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~a  348 (715)
T 3n75_A          272 LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCG  348 (715)
T ss_dssp             BCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSST
T ss_pred             ccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccccccc
Confidence                     68999998863  334   8999999 89999999999999998764  799999986641 1      12


Q ss_pred             cCCC--CcEE---EecccccccCCCCceeeEEEEcchhHHHHHHHhhhhc-CCCCCHHhHHHHHccccc-----HHHHHH
Q 022194          187 LELG--ADIV---MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-GSGLAPFDCWICLRGVKT-----MALRVE  255 (301)
Q Consensus       187 ~~~~--~di~---~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-----~~~~~~  255 (301)
                      ...+  +|++   +.|+||+++|+.  ++|+++++++.....+....... ..+++....+.+..+.+.     -.++++
T Consensus       349 l~~g~~aD~vii~~~S~hKtL~glt--qgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~  426 (715)
T 3n75_A          349 MSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLIN  426 (715)
T ss_dssp             TSSSCCTTCEEEEEECHHHHSSCCT--TCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             cccCcCCCEEEEEEecccccccCCC--CeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHH
Confidence            2222  5665   999999997764  36888887653333333333333 344455444444444322     245678


Q ss_pred             HHHHHHHHHHHHHHhCC
Q 022194          256 KQQDNAQKIAEFLASHP  272 (301)
Q Consensus       256 ~~~~~~~~l~~~l~~~~  272 (301)
                      +..++++++++.|++++
T Consensus       427 ~l~~~a~~~r~~L~~i~  443 (715)
T 3n75_A          427 GSIERAIKFRKEIKRLR  443 (715)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            88999999999998764

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.83  E-value=1.4e-19  Score=161.79  Aligned_cols=208  Identities=22%  Similarity=0.193  Sum_probs=136.5

Q ss_pred             HHHHHHHHHhhcCCCce-EEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhh-hcccCCcEEEEecC-----CC
Q 022194           57 RDALESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR-VTPKTGVVVKRVNT-----CD  128 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~~-i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~-~~~~~g~~~~~~~~-----~d  128 (301)
                      .+.++++++++++.+.. +++++|++++. ++..++++||+|+++.+.|+++...... .....+.....++.     .|
T Consensus        78 ~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  157 (420)
T 3gbx_A           78 EQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKID  157 (420)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCC
T ss_pred             HHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcC
Confidence            44455788999998744 55899998885 6677899999999999999874321111 11111233333322     38


Q ss_pred             HHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccc-----cCccCCCCcEEEecccccc
Q 022194          129 LDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFI  202 (301)
Q Consensus       129 ~~~l~~~l~~-~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~-----~~~~~~~~di~~~S~sK~~  202 (301)
                      ++++++++++ ++++|++++|+|+  ...++++|+++|++||+++|+||+|+.+..     ..... ..|++++|+||++
T Consensus       158 ~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~  234 (420)
T 3gbx_A          158 YDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKTL  234 (420)
T ss_dssp             HHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGGG
T ss_pred             HHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeecccCC
Confidence            9999999975 5899999888886  478899999999999999999999875433     22222 4799999999999


Q ss_pred             cCCCCceeeEEEEcc--hhHHHHHHHhhhhcCC-CCCHHhH---H-HHHccc-ccHHHHHHHHHHHHHHHHHHHHh
Q 022194          203 AGHSDVMAGVLAVKG--ERLAKELYFLQNAEGS-GLAPFDC---W-ICLRGV-KTMALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~---~-~~~~~l-~~~~~~~~~~~~~~~~l~~~l~~  270 (301)
                      +|+.   +|+++.++  +.+.+.+......... +......   . +....+ +.+.+.+++..++++++.+.|++
T Consensus       235 ~g~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  307 (420)
T 3gbx_A          235 AGPR---GGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN  307 (420)
T ss_dssp             CSCS---CEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC---ceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Confidence            7654   58998886  3555544433322211 2222211   1 112222 34567778888999999999987

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.83  E-value=2.5e-20  Score=169.46  Aligned_cols=253  Identities=15%  Similarity=0.073  Sum_probs=161.0

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccC--CCCchHHHHHHHHHhhcC--CCceEEecchHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTR--SGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~--~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~   84 (301)
                      .++|||.++  +.++|.. +|.+..+...+.+   ...+.+..  +..+.+.++++.|+++++  .+++++++||++|+.
T Consensus        55 ~~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~---~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~  130 (472)
T 3hmu_A           55 EEILDAMAGLWCVNIGYG-RDELAEVAARQMR---ELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEAND  130 (472)
T ss_dssp             CEEECTTHHHHTCTTCBC-CHHHHHHHHHHHH---HCSCCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHH
T ss_pred             CEEEECCCchhhccCCCC-CHHHHHHHHHHHH---hccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHH
Confidence            478999854  5779986 4444443222211   11112222  234568999999999985  447888888999986


Q ss_pred             HHHh-ccC--------CCCeEEEcCCCCccHHHHHhhhc---------c-cCCcEEEEecC----C---C--------HH
Q 022194           85 AVTH-LLG--------TGEEIVAGDDLYGGTDRLLSRVT---------P-KTGVVVKRVNT----C---D--------LD  130 (301)
Q Consensus        85 ~~~~-~~~--------~g~~Vlv~~~~y~~~~~~~~~~~---------~-~~g~~~~~~~~----~---d--------~~  130 (301)
                      +++. +..        ++++|++.++.||++........         . ..++.....+.    .   |        ++
T Consensus       131 ~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~  210 (472)
T 3hmu_A          131 TNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARAR  210 (472)
T ss_dssp             HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHH
Confidence            4433 332        46899999999998753321111         1 11333333222    1   1        67


Q ss_pred             HHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-cccCc---cCCC--CcEEEe
Q 022194          131 EVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLSRP---LELG--ADIVMH  196 (301)
Q Consensus       131 ~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~~~---~~~~--~di~~~  196 (301)
                      ++++.+.    +++++|+++.+++++|.+.+    +++|.++|++||+++|+||+|... ..+..   ...+  .|++  
T Consensus       211 ~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~--  288 (472)
T 3hmu_A          211 ELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIM--  288 (472)
T ss_dssp             HHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE--
T ss_pred             HHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCcee--
Confidence            8888775    56788888888888888876    999999999999999999999742 22211   1123  4554  


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHHh--hhhcCCCCCHHhHHHHHcccccHH--HHHHHHH-HHHHHHHHHHHhC
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQ-DNAQKIAEFLASH  271 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~-~~~~~l~~~l~~~  271 (301)
                      +++|+++| ++++.|++++++ .+.+.+...  ....+.+.++..+++++..++.+.  +..++.. ++.+++++.|+++
T Consensus       289 t~sK~l~g-g~~plG~v~~~~-~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l  366 (472)
T 3hmu_A          289 TIAKGLSS-GYAPIGGSIVCD-EVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEAL  366 (472)
T ss_dssp             EECGGGTT-TSSCCEEEEEEH-HHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGG
T ss_pred             eechhhhc-CCcceEEEEECH-HHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            58899954 446789998874 455544211  222345567888888777776542  3456666 6777777777653

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.83  E-value=4.8e-20  Score=165.53  Aligned_cols=205  Identities=19%  Similarity=0.200  Sum_probs=140.7

Q ss_pred             HHHHHHHHHhhcC--C-CceEEecch-HHHHH-HHHhc--------cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEE
Q 022194           57 RDALESLLAKLDK--A-DRALCFTSG-MAALA-AVTHL--------LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (301)
Q Consensus        57 ~~~l~~~l~~~~~--~-~~~i~~~sG-~~ai~-~~~~~--------~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~  123 (301)
                      ++++.+++.+..+  . ++.+++++| ++++. ++..+        +++||+|+++.|.|..+...+    +..|.+++.
T Consensus       106 r~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~----~~~g~~~~~  181 (427)
T 2hox_A          106 EKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT----KYFDKKGYV  181 (427)
T ss_dssp             HHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHH----HHSCBTTEE
T ss_pred             HHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHH----HHcCCeeee
Confidence            4445555544322  2 244555555 68886 55667        789999999999999887444    344554443


Q ss_pred             ecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       124 ~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                      .. .|++.+++++++++++|++++|+||||.+.+ + ++   +  ++..+.|+.+...... .....+.+++++||||.+
T Consensus       182 ~~-~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~-~l---~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~  253 (427)
T 2hox_A          182 WA-GNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A-VI---K--GCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFT  253 (427)
T ss_dssp             EE-EEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C-SS---T--TCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHT
T ss_pred             ec-CCHHHHHHhhcCCceEEEEcCCCCCcccccH-H-HH---c--CCCEEEeecccCCCCCccccCCCceEEEEeChhcC
Confidence            33 2678888888888999999999999999998 3 32   2  5688999987532111 111256899999999999


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc---------------cHHHHHHHHHHHHHHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---------------TMALRVEKQQDNAQKIAEF  267 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~~~~~l~~~  267 (301)
                       |++|+|.|+++++++.+.+.+.........+.+...+.++...++               .+.+.++++.++.+.+.+.
T Consensus       254 -g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  332 (427)
T 2hox_A          254 -GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITAL  332 (427)
T ss_dssp             -SCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence             667899999999766777777666655555556655444333322               2345567788888899999


Q ss_pred             HHhCCCc
Q 022194          268 LASHPRV  274 (301)
Q Consensus       268 l~~~~~v  274 (301)
                      |++++++
T Consensus       333 L~~~~g~  339 (427)
T 2hox_A          333 LDQSDRF  339 (427)
T ss_dssp             HTTSSSE
T ss_pred             HHhCcCc
Confidence            9887554

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.82  E-value=6.4e-20  Score=166.04  Aligned_cols=260  Identities=16%  Similarity=0.177  Sum_probs=155.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~~   85 (301)
                      ..+|||.++  ..++|..+ |.+......+.+  ....+.+..+..+.+.+++++++++++   .+++++++||++|+.+
T Consensus        64 ~~ylD~~~~~~~~~lGh~~-p~v~~A~~~~~~--~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~  140 (453)
T 4ffc_A           64 NSFIDLGAGIAVTTVGASH-PAVAAAIADQAT--HFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVEN  140 (453)
T ss_dssp             CEEEESSHHHHTCTTCTTC-HHHHHHHHHHHH--HCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHH
T ss_pred             CEEEEcCCCcccCcCCCCC-HHHHHHHHHHHH--hccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHH
Confidence            468999854  56788764 444443222211  112222222234558999999999985   3467888889999964


Q ss_pred             HHhcc---CCCCeEEEcCCCCccHHHHHhhhcc----------cCCcEEEEecCC----C-------------HHHHHhh
Q 022194           86 VTHLL---GTGEEIVAGDDLYGGTDRLLSRVTP----------KTGVVVKRVNTC----D-------------LDEVASA  135 (301)
Q Consensus        86 ~~~~~---~~g~~Vlv~~~~y~~~~~~~~~~~~----------~~g~~~~~~~~~----d-------------~~~l~~~  135 (301)
                      ++.++   ..+++|++.++.||+..........          .....+..++..    |             .+.+++.
T Consensus       141 alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~  220 (453)
T 4ffc_A          141 AIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQ  220 (453)
T ss_dssp             HHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHh
Confidence            44332   3568999999999987543322211          111123333322    2             3566776


Q ss_pred             cCCCceEEEEeCCCCCc-ccccc----HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCCCCcEEEecccccccCCC
Q 022194          136 IGPWTKLVWVESPTNPR-QQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELGADIVMHSATKFIAGHS  206 (301)
Q Consensus       136 l~~~~~~v~i~~~~np~-G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~~~di~~~S~sK~~~g~~  206 (301)
                      +..+..++++..|.|++ |.+.+    +++|+++|++||+++|+||+|... ...   .....+....+.+++|++++  
T Consensus       221 i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~--  298 (453)
T 4ffc_A          221 IGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAG--  298 (453)
T ss_dssp             TCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGT--
T ss_pred             cCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcC--
Confidence            66444444444455554 55554    999999999999999999998732 221   11122444445678999954  


Q ss_pred             CceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHH----hCCCcce
Q 022194          207 DVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA----SHPRVKK  276 (301)
Q Consensus       207 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~----~~~~v~~  276 (301)
                      |++.|++++++ .+.+.+.......++..++..+++++..++.+.  +..++..++.+++++.|+    +++.+..
T Consensus       299 G~~~G~~~~~~-~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  373 (453)
T 4ffc_A          299 GMPLSAVTGRA-ELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGE  373 (453)
T ss_dssp             TSSCEEEEEEH-HHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEE
T ss_pred             CcCeEEEEECH-HHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence            68899998864 455544333444456667777777776665432  234555555555555554    4554433

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.81  E-value=3.5e-19  Score=162.36  Aligned_cols=215  Identities=14%  Similarity=0.126  Sum_probs=152.8

Q ss_pred             HHHHHHHHHhhcCCCc------------eEEecchHHHHH-HHHhcc-------------------CCCCeEEEcCCCCc
Q 022194           57 RDALESLLAKLDKADR------------ALCFTSGMAALA-AVTHLL-------------------GTGEEIVAGDDLYG  104 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~------------~i~~~sG~~ai~-~~~~~~-------------------~~g~~Vlv~~~~y~  104 (301)
                      .+++.+++++++|.+.            .+++++||+++. ++....                   .+++.|++++..|.
T Consensus       120 E~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~  199 (481)
T 4e1o_A          120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHS  199 (481)
T ss_dssp             HHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCH
T ss_pred             HHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchH
Confidence            5566677888888763            477888897763 443321                   15678999999999


Q ss_pred             cHHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcCCC------ceEEEEeCCCCCccccccHHHHHHHHHHcCCEEE
Q 022194          105 GTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPW------TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL  173 (301)
Q Consensus       105 ~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~------~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li  173 (301)
                      ++.+.    +...|.+++.++.+     |+++|+++++++      +.+|+++.++|++|.+.|+++|+++|++||+|++
T Consensus       200 s~~~~----~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lh  275 (481)
T 4e1o_A          200 SVEKA----GLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLH  275 (481)
T ss_dssp             HHHHH----HHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEE
T ss_pred             HHHHH----HHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEE
Confidence            88744    34568889888865     899999998643      6788889999999999999999999999999999


Q ss_pred             EeCCcCCccccCc----cCCC---CcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh-hh---------------
Q 022194          174 VDNSIMSPVLSRP----LELG---ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NA---------------  230 (301)
Q Consensus       174 ~D~~~~~~~~~~~----~~~~---~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~-~~---------------  230 (301)
                      +|++|+.+....+    ...|   +|.++.++||++++|.|  .|+++.+++.......... ..               
T Consensus       276 vDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g--~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~  353 (481)
T 4e1o_A          276 IDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFD--CTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHW  353 (481)
T ss_dssp             EECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGG
T ss_pred             eehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCc--eEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccc
Confidence            9999987654221    1123   59999999999988877  4777777665433111000 00               


Q ss_pred             ---cCCCCCHHhHHHHHcc--cccHHHHHHHHHHHHHHHHHHHHhCCCcceE
Q 022194          231 ---EGSGLAPFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKV  277 (301)
Q Consensus       231 ---~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v  277 (301)
                         .+........++.+..  .+.+.+.+++..++++++.+.|++.++++.+
T Consensus       354 ~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  405 (481)
T 4e1o_A          354 QIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIP  405 (481)
T ss_dssp             SSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECC
T ss_pred             cccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence               0001123334444443  3446778889999999999999998776543

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.80  E-value=3.8e-18  Score=152.17  Aligned_cols=221  Identities=14%  Similarity=0.072  Sum_probs=141.2

Q ss_pred             CccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecchHHHHH-H---H-HhccCCCCeEEEcCCCCccHHHHHhhhcc
Q 022194           46 PYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGMAALA-A---V-THLLGTGEEIVAGDDLYGGTDRLLSRVTP  115 (301)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG~~ai~-~---~-~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~  115 (301)
                      ...|.+. |.|. ++++.+.+-......   ..+-+.+||.|+. +   + ..+++|||+|++++|.|..+.    .+++
T Consensus        80 ~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~----~i~~  155 (420)
T 4h51_A           80 DYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHY----GVVK  155 (420)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHH----HHHH
T ss_pred             CCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHH----HHHH
Confidence            3457777 8877 666666553222121   2333566676653 2   2 224679999999999999997    4455


Q ss_pred             cCCcE-EEEec---CC----CHHHHHhhc---CCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCc
Q 022194          116 KTGVV-VKRVN---TC----DLDEVASAI---GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (301)
Q Consensus       116 ~~g~~-~~~~~---~~----d~~~l~~~l---~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~  181 (301)
                      ..|.+ +...+   .+    |.+.+++.+   .++++++++++||||||...+   +++|+++|+++++++|+|++|...
T Consensus       156 ~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~  235 (420)
T 4h51_A          156 AAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGY  235 (420)
T ss_dssp             HTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTT
T ss_pred             HcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhh
Confidence            56654 32222   11    566666555   367788888999999999974   888999999999999999999765


Q ss_pred             cccCc-----------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHH------HHHHhhhhcCCCCCHHhHHHHH
Q 022194          182 VLSRP-----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK------ELYFLQNAEGSGLAPFDCWICL  244 (301)
Q Consensus       182 ~~~~~-----------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  244 (301)
                      .+...           ......+++.||||.| +.+|.|.|++++..+....      .+...........+...+....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~  314 (420)
T 4h51_A          236 ASGSLDTDAYAARLFARRGIEVLLAQSFSKNM-GLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAH  314 (420)
T ss_dssp             TTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred             ccCCcccchHHHHhHHhhCceEEEEecccccc-ccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHH
Confidence            54321           1223578999999999 6678999999886543322      1222222222333444433332


Q ss_pred             ccc----------ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          245 RGV----------KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       245 ~~l----------~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..+          +.+...++++.++++.+.+.|++.
T Consensus       315 ~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~  351 (420)
T 4h51_A          315 LILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRL  351 (420)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222          224455667777788888888774

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.80  E-value=4.2e-19  Score=161.50  Aligned_cols=215  Identities=14%  Similarity=0.148  Sum_probs=149.6

Q ss_pred             HHHHHHHHHhhcCCC-----------ceEEecchHHHHH-HHHhcc-------------------CCCCeEEEcCCCCcc
Q 022194           57 RDALESLLAKLDKAD-----------RALCFTSGMAALA-AVTHLL-------------------GTGEEIVAGDDLYGG  105 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-----------~~i~~~sG~~ai~-~~~~~~-------------------~~g~~Vlv~~~~y~~  105 (301)
                      .+++.+++++++|.+           ..+++++||+++. ++....                   .+++.|+++...|.+
T Consensus       115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s  194 (475)
T 3k40_A          115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSS  194 (475)
T ss_dssp             HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHH
T ss_pred             HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHH
Confidence            445667788888876           3678888897763 443321                   134689999999998


Q ss_pred             HHHHHhhhcccCCcEEEEecCC----CHHHHHhhcCCC------ceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEe
Q 022194          106 TDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPW------TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD  175 (301)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~------~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D  175 (301)
                      +.    +.+...|++++.++.+    |++++++++.+.      +.+|+++.++|++|.+.|+++|+++|++||+|+++|
T Consensus       195 ~~----~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD  270 (475)
T 3k40_A          195 VE----RAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVD  270 (475)
T ss_dssp             HH----HHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred             HH----HHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEe
Confidence            86    4444578899999874    899999998743      677888999999999999999999999999999999


Q ss_pred             CCcCCccccCc----cCC---CCcEEEecccccccCCCCceeeEEEEcchhHH-HHHHH----hhhhc-C----------
Q 022194          176 NSIMSPVLSRP----LEL---GADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYF----LQNAE-G----------  232 (301)
Q Consensus       176 ~~~~~~~~~~~----~~~---~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~-~~~~~----~~~~~-~----------  232 (301)
                      ++|+.+....+    ...   .+|.++.|+||++++|.|  +|+++.+++... +.+..    +.... +          
T Consensus       271 ~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g--~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~  348 (475)
T 3k40_A          271 AAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFD--CSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQI  348 (475)
T ss_dssp             CTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESSGGGC---------------------------
T ss_pred             HHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCc--eEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccc
Confidence            99987654221    111   369999999999988876  477777765432 21110    00000 0          


Q ss_pred             -CC--CCHHhHHHHHcc--cccHHHHHHHHHHHHHHHHHHHHhCCCcceE
Q 022194          233 -SG--LAPFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKV  277 (301)
Q Consensus       233 -~~--~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v  277 (301)
                       .+  ......+++++.  .+.+.+.+++..++++++.+.|+++++++.+
T Consensus       349 ~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~  398 (475)
T 3k40_A          349 PLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELA  398 (475)
T ss_dssp             CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred             cCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence             00  112233433333  2346777888999999999999998776543

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.68  E-value=2.5e-21  Score=174.58  Aligned_cols=250  Identities=15%  Similarity=0.089  Sum_probs=165.2

Q ss_pred             ceeeecCCCCCC---CCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNEFDP---YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~~~~---~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~~~~~i~~~sG~~ai~~~   86 (301)
                      .++|||. ++.+   +|. ++|.+..+...+.+  ....+   .+..+...++++.|++++ +.+.+++++||++|+.++
T Consensus       100 ~~yiD~~-~~~~~~~lGh-~~p~V~~Av~~q~~--~~~~~---~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~A  172 (465)
T 2yky_A          100 HAYVNFL-GEYTAGLFGH-SHPVIRAAVERALA--VGLNL---STQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMA  172 (465)
Confidence            4689998 5555   775 45555554322211  11111   123456889999999998 677888999999998655


Q ss_pred             Hhcc---CCCCeEEEcCCCCccHHHHHhhhcccCCc--EEEEecCCCHHHHHhhcC---CCceEEEEeCCCCCcccccc-
Q 022194           87 THLL---GTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD-  157 (301)
Q Consensus        87 ~~~~---~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~--~~~~~~~~d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~-  157 (301)
                      +.++   ..+++|++.++.||+.......-....|+  .+..++..|+++++++++   +++++|+++..++++|.+.+ 
T Consensus       173 ik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~  252 (465)
T 2yky_A          173 LATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAE  252 (465)
Confidence            4443   45689999999999875321100012233  444555668999999987   68899999877777998766 


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCcCCccccC---ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHH-----
Q 022194          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-----  226 (301)
Q Consensus       158 ---l~~l~~l~~~~~~~li~D~~~~~~~~~~---~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~-----  226 (301)
                         +++|.++|++||+++|+||+|+ +....   ....+....+.+|+|++++  |++.|+++++++ +++.+..     
T Consensus       253 ~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~t~sK~lg~--G~piG~v~~~~~-i~~~l~~~~~g~  328 (465)
T 2yky_A          253 RAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLTTLGKYIGG--GMSFGAFGGRRD-LMERFDPARDGA  328 (465)
Confidence               9999999999999999999999 53221   1122444556689999964  678899988754 4454433     


Q ss_pred             hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhC
Q 022194          227 LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .....+.+.++..+++++..++.+.  ...+++.++.+++++.|++.
T Consensus       329 ~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~  375 (465)
T 2yky_A          329 FAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRI  375 (465)
Confidence            1222334456666666666666542  34566666666777766553

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.80  E-value=1.3e-18  Score=158.03  Aligned_cols=209  Identities=17%  Similarity=0.164  Sum_probs=136.8

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccC----CCCe---EEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLG----TGEE---IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~----~g~~---Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      +...+++++++++++.+++++++||++|+. ++..+++    +||+   |+++.+.|..+.    ..+...|.+++.++.
T Consensus        76 ~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~----~~~~~~g~~~~~~~~  151 (467)
T 1ax4_A           76 RNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTA----AHVELNGCKAINIVT  151 (467)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHH----HHHHHTTCEEEECBC
T ss_pred             ccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhh----HHHhccCCceecccc
Confidence            457899999999999988888899999985 5666677    8998   998844444433    333445666654421


Q ss_pred             ---------------CCHHHHHhhcCC----CceEEEEeCCCCCc-cccc---cHHHHHHHHHHcCCEEEEeCCcCC---
Q 022194          127 ---------------CDLDEVASAIGP----WTKLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDNSIMS---  180 (301)
Q Consensus       127 ---------------~d~~~l~~~l~~----~~~~v~i~~~~np~-G~~~---~l~~l~~l~~~~~~~li~D~~~~~---  180 (301)
                                     .|++++++++++    ++++|++++++||+ |.+.   ++++|+++|++||+++|+|+++..   
T Consensus       152 ~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~  231 (467)
T 1ax4_A          152 EKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA  231 (467)
T ss_dssp             GGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHH
T ss_pred             cccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcc
Confidence                           278999998873    68999999999999 7765   478999999999999999998654   


Q ss_pred             --------ccccCc-cC------CCCcEEEecccccccCCCCceeeEEEEcch-hHHHHHHHhhhh-cC----CCCCHHh
Q 022194          181 --------PVLSRP-LE------LGADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKELYFLQNA-EG----SGLAPFD  239 (301)
Q Consensus       181 --------~~~~~~-~~------~~~di~~~S~sK~~~g~~g~~~g~~~~~~~-~~~~~~~~~~~~-~~----~~~~~~~  239 (301)
                              +..... ..      ...|+++.|+||+++.+   .+|+++.+++ .+.+.+...... .+    ...+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~  308 (467)
T 1ax4_A          232 YFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRD  308 (467)
T ss_dssp             HHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHH
T ss_pred             hhccccccccCCCchhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccCCccchH
Confidence                    111111 11      23688899999998543   2577777744 555554433221 11    1122221


Q ss_pred             HHHHHcccccH--HHHHHHHHHHHHHHHHHHHh
Q 022194          240 CWICLRGVKTM--ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       240 ~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ..++..+++..  .+..++..++.+++.+.|++
T Consensus       309 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~  341 (467)
T 1ax4_A          309 MAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE  341 (467)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            12111122211  22444555677788888876

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.79  E-value=2.8e-19  Score=157.02  Aligned_cols=200  Identities=14%  Similarity=0.055  Sum_probs=138.2

Q ss_pred             HHHHHHHHHhhcCCC---ceEEec-chHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           57 RDALESLLAKLDKAD---RALCFT-SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~-sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ++++++++++++|.+   ++++++ +|++++. ++..++++||+|++.++.+.+..  +...++..| +++.++.+    
T Consensus        51 ~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~~  127 (362)
T 2c0r_A           51 HNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEASN  127 (362)
T ss_dssp             HHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGGT
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEecccccc
Confidence            788999999999986   345664 5578886 66778899999998877655432  123444456 66666532    


Q ss_pred             -----CHHHHHhhcCCCceEEEEeCCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEeccccc
Q 022194          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF  201 (301)
Q Consensus       128 -----d~~~l~~~l~~~~~~v~i~~~~np~G~~-~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~  201 (301)
                           |.+++  .+++++++|++++++||||.. .|+++|      +|+++++|++|+.+....... ..|+++.|+||+
T Consensus       128 ~~~~~~~~~~--~i~~~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~-~~d~~~~s~~K~  198 (362)
T 2c0r_A          128 YMTLPKLQEI--QLQDNAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLN-QFGLVYAGAQKN  198 (362)
T ss_dssp             TCSCCCGGGC--CCCTTEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGG-GCSEEEEETTTT
T ss_pred             cccCCCHHHc--ccCCCcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccchh-HCcEEEEecccc
Confidence                 33333  267789999999999999996 778777      899999999999876542222 248999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHH------------hhhhcCCCCCHHhHHHHHccccc------HHHHHHHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYF------------LQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQK  263 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~  263 (301)
                      + ||+|  .|+++++++.+ +.+..            .......+.+....+++..+++.      +.+.+++..+++++
T Consensus       199 ~-g~~G--~G~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~  274 (362)
T 2c0r_A          199 L-GPSG--VTVVIVREDLV-AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASL  274 (362)
T ss_dssp             T-CCSS--CEEEEEEGGGS-SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             c-cCcC--cEEEEEcHHHH-hhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            9 5777  58998876543 22111            01122345555555555444432      45667788888889


Q ss_pred             HHHHHHhCC
Q 022194          264 IAEFLASHP  272 (301)
Q Consensus       264 l~~~l~~~~  272 (301)
                      +.+.|++++
T Consensus       275 l~~~L~~~~  283 (362)
T 2c0r_A          275 IYDAIDQSG  283 (362)
T ss_dssp             HHHHHHTST
T ss_pred             HHHHHHHcC
Confidence            999998875

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.77  E-value=4.1e-19  Score=155.64  Aligned_cols=202  Identities=13%  Similarity=0.116  Sum_probs=136.3

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecch-HHHHH-HHHhccCC---CCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGT---GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~-~~~~~~~~---g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      .+++++++++++|.+   ++++++++ ++|+. ++..++.+   ||.|+++.+.|...     ..++..| +++.++.+ 
T Consensus        50 ~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-----~~~~~~g-~~~~v~~~~  123 (360)
T 1w23_A           50 HEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-----KEAKLLG-ETHIAASTK  123 (360)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-----HHHHTTS-EEEEEEECG
T ss_pred             HHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-----HHHHHhC-CeEEeeccc
Confidence            789999999999876   34455555 78886 55666654   55677665555432     2345567 88877753 


Q ss_pred             -----CHHHHHh-hcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEeccccc
Q 022194          128 -----DLDEVAS-AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF  201 (301)
Q Consensus       128 -----d~~~l~~-~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~  201 (301)
                           |++++++ ++++++++|++++|+||||.+.+  +|.   +++|+++|+|++|+.+....... ..|++++|+||+
T Consensus       124 ~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~--~i~---~~~~~~li~D~a~~~~~~~~~~~-~~di~~~s~sK~  197 (360)
T 1w23_A          124 ANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ--NFP---EINHAPLIADMSSDILSRPLKVN-QFGMIYAGAQKN  197 (360)
T ss_dssp             GGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECS--SCC---CCCSSCEEEECTTTTTSSCCCGG-GCSEEEEETTTT
T ss_pred             ccCcCCccchHhhccCCCCCEEEEeCCCCCcceecc--ccc---ccCCceEEEechhhcCCCCcCcc-cCCEEEEEcccc
Confidence                 6678888 88888999999999999999976  333   38999999999998776442222 238999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHhh-----------h-hcCCCCCHHhHHHHHccccc------HHHHHHHHHHHHHH
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFLQ-----------N-AEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQK  263 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~  263 (301)
                      + |++|  .|+++++++.+ +.+....           . ....+.+....+++..+++.      +.+.++++.+++++
T Consensus       198 ~-~~~G--~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  273 (360)
T 1w23_A          198 L-GPSG--VTVVIVKKDLL-NTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKI  273 (360)
T ss_dssp             T-SCTT--CEEEEEEHHHH-CSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             c-CCCC--cEEEEEcHHHH-hhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            9 5666  58888875432 3221110           0 11123344443333333332      45567788888899


Q ss_pred             HHHHHHhCCCc
Q 022194          264 IAEFLASHPRV  274 (301)
Q Consensus       264 l~~~l~~~~~v  274 (301)
                      +.+.|++++++
T Consensus       274 l~~~L~~~~~~  284 (360)
T 1w23_A          274 IYDTIDESNGF  284 (360)
T ss_dssp             HHHHHHTTTTS
T ss_pred             HHHHHHHccCc
Confidence            99999887643

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.77  E-value=9e-18  Score=151.28  Aligned_cols=209  Identities=21%  Similarity=0.217  Sum_probs=142.4

Q ss_pred             HHHHHHHHHhhcCCCc--eEEecchHHH---HHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           57 RDALESLLAKLDKADR--ALCFTSGMAA---LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~--~i~~~sG~~a---i~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+++++.+++++|.+.  ++++++|+.+   +..+. .+++||+|+++++.|+++...+...++..|++++.++..    
T Consensus       110 ~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~  188 (438)
T 1wyu_A          110 TFEYQTMIAELAGLEIANASMYDGATALAEGVLLAL-RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRT  188 (438)
T ss_dssp             HHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBC
T ss_pred             HHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCcc
Confidence            7889999999999873  3566666633   32222 357899999999999999877766667789999999853    


Q ss_pred             CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCC-cCCccccCccCCCCcEEEecccc-----c
Q 022194          128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATK-----F  201 (301)
Q Consensus       128 d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~-~~~~~~~~~~~~~~di~~~S~sK-----~  201 (301)
                      |+++    +++++++|++++| ||+|.+.|+++|+++|+++|+++++|.. ++.+....+...++|++++|.+|     +
T Consensus       189 d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~  263 (438)
T 1wyu_A          189 PLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMG  263 (438)
T ss_dssp             CCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCG
T ss_pred             CHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCCcc
Confidence            2333    6678999999999 9999999999999999999999997743 44444444455689999999444     4


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHH-------------------------hhh-hcCCCC---CHHhHH-HH--Hccc--
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYF-------------------------LQN-AEGSGL---APFDCW-IC--LRGV--  247 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~-------------------------~~~-~~~~~~---~~~~~~-~~--~~~l--  247 (301)
                      ++||   ++|+++++++.. +.+..                         ... ..+...   +...+. +.  +..+  
T Consensus       264 ~~Gp---~~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~  339 (438)
T 1wyu_A          264 FGGP---HFGFLATKKAFV-RQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGP  339 (438)
T ss_dssp             GGCS---CCEEEEECGGGG-GGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCC---CeeEEEEcHHHH-HhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCH
Confidence            5454   468998876533 32210                         010 111111   222221 11  2222  


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          248 KTMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      +.+.+..++..++++++.+.|++.+++.
T Consensus       340 ~g~~~~~~~~~~~~~~l~~~L~~~~g~~  367 (438)
T 1wyu_A          340 EGLREVALKSVEMAHKLHALLLEVPGVR  367 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            1245566778888899999999887664

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.77  E-value=1.6e-18  Score=156.67  Aligned_cols=247  Identities=12%  Similarity=0.050  Sum_probs=151.1

Q ss_pred             ceeeecCCCC--CCCCccccCeee-c-ceee---cCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEecchH
Q 022194           11 TLLMNFSNEF--DPYGALSTPLYQ-T-ATFK---QPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGM   80 (301)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~p~~~-~-~~~~---~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~---~~~~i~~~sG~   80 (301)
                      ..++||.++.  ..+|.. +|.+. . ....   +.+  ....+. ..+..+...++++.+++.++   .+++++++||+
T Consensus        54 ~~ylD~~~~~~~~~lG~~-~p~v~~~~A~~~~~~~~~--~~~~~~-~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gs  129 (449)
T 2cjg_A           54 RRYLDMFTFVASSALGMN-PPALVDDREFHAELMQAA--LNKPSN-SDVYSVAMARFVETFARVLGDPALPHLFFVEGGA  129 (449)
T ss_dssp             CEEEESSHHHHTCSSCBS-CHHHHTCHHHHHHHHHHH--TCCCCT-TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHH
T ss_pred             cEEEEccCCccccCCCCC-CHHHHHHHHHHHHHHHHH--hcCCCC-cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchH
Confidence            3688885222  357765 45454 3 3222   111  111111 22344558899999999984   45677888889


Q ss_pred             HHHHHHHhc----cC-----------CCCeEEEcCCCCccHHHHHhhhc----------ccCCcEEEEecCCC--H----
Q 022194           81 AALAAVTHL----LG-----------TGEEIVAGDDLYGGTDRLLSRVT----------PKTGVVVKRVNTCD--L----  129 (301)
Q Consensus        81 ~ai~~~~~~----~~-----------~g~~Vlv~~~~y~~~~~~~~~~~----------~~~g~~~~~~~~~d--~----  129 (301)
                      +|+..++.+    ..           +||+|++.+|.||++........          ......+..++.+|  .    
T Consensus       130 eA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  209 (449)
T 2cjg_A          130 LAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPA  209 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccc
Confidence            998643322    12           28999999999998642111111          11112556666555  3    


Q ss_pred             ---------HHHHhhcC---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-cccCc---c--
Q 022194          130 ---------DEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLSRP---L--  187 (301)
Q Consensus       130 ---------~~l~~~l~---~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~~~---~--  187 (301)
                               ++++++++   +++++|+++.++|++|...+    +++|.++|++||+++|+||+|+.. ..+..   .  
T Consensus       210 ~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~  289 (449)
T 2cjg_A          210 MAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQL  289 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHH
T ss_pred             cchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeeccc
Confidence                     33777774   67888888877889997665    999999999999999999999832 22111   1  


Q ss_pred             CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHH-----HhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHH
Q 022194          188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-----FLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDN  260 (301)
Q Consensus       188 ~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~  260 (301)
                      ....|+  .|+||++  |    .|++++++ .+.+.+.     ......+...++..+.++..+++.+.  +..++..++
T Consensus       290 ~~~~di--~t~sK~l--~----iG~~~~~~-~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~  360 (449)
T 2cjg_A          290 DVAPDI--VAFGKKT--Q----VCGVMAGR-RVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQH  360 (449)
T ss_dssp             TCCCSE--EEECGGG--S----SEEEEECG-GGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CCCceE--EEecCcc--c----EEEEEECH-HHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            123454  4789998  3    57777775 4444211     11222334556777777766666442  345667777


Q ss_pred             HHHHHHHHHh
Q 022194          261 AQKIAEFLAS  270 (301)
Q Consensus       261 ~~~l~~~l~~  270 (301)
                      .+++.+.|++
T Consensus       361 ~~~l~~~L~~  370 (449)
T 2cjg_A          361 GKYLRARLDE  370 (449)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7778887764

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.75  E-value=9.8e-18  Score=149.12  Aligned_cols=209  Identities=11%  Similarity=0.053  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHhhcCCC---ceEE-ecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccC--CcEEEEecCCC
Q 022194           56 TRDALESLLAKLDKAD---RALC-FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT--GVVVKRVNTCD  128 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~---~~i~-~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~--g~~~~~~~~~d  128 (301)
                      ..+++++++++++|.+   ++++ ++||++++. ++..++++| .+.+....| +..  +...+...  |.+++.++.++
T Consensus        79 ~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~-~~~--~~~~~~~~~~g~~~~~v~~~~  154 (398)
T 2fyf_A           79 LVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEF-SAK--FASAVSKNPFVGEPIIITSDP  154 (398)
T ss_dssp             HHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHH-HHH--HHHHHHHCTTSCCCEEEECCT
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHH-HHH--HHHHHHHhCCCCceEEEecCC
Confidence            3788999999999986   3444 566679986 566677886 233333333 211  11112222  55666665431


Q ss_pred             HHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCc
Q 022194          129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDV  208 (301)
Q Consensus       129 ~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~  208 (301)
                      -......+.+++++|++++++||||.+.|+++|.++   +|+++|+|++|+.+....... +.|+++.|+||++++++| 
T Consensus       155 g~~~~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-~~di~~~s~sK~~~~~gg-  229 (398)
T 2fyf_A          155 GSAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-ETDAYYFAPQKNFASDGG-  229 (398)
T ss_dssp             TCCCCCCCCTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-GCSEEEECTTSTTCSCSS-
T ss_pred             CCCCCccccCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-cCcEEEEecCcccCCCCc-
Confidence            111111356789999999999999999999888887   899999999998776543222 479999999999965433 


Q ss_pred             eeeEEEEcchhHHHHHHHhh---------------------hhcCCCCCHHhHHHHHccccc------HHHHHHHHHHHH
Q 022194          209 MAGVLAVKGERLAKELYFLQ---------------------NAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNA  261 (301)
Q Consensus       209 ~~g~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~  261 (301)
                       .|+++.+++ +.+.+....                     .....+.+....+++..+++.      +.+.+++..+++
T Consensus       230 -~g~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~  307 (398)
T 2fyf_A          230 -LWLAIMSPA-ALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSS  307 (398)
T ss_dssp             -EEEEEECHH-HHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             -eEEEEECHH-HHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence             688888754 434332110                     011123444444444334332      455677788888


Q ss_pred             HHHHHHHHhCCCcc
Q 022194          262 QKIAEFLASHPRVK  275 (301)
Q Consensus       262 ~~l~~~l~~~~~v~  275 (301)
                      +++.+.|++++++.
T Consensus       308 ~~l~~~L~~~~g~~  321 (398)
T 2fyf_A          308 QRLYSWAQERPYTT  321 (398)
T ss_dssp             HHHHHHHHHSTTEE
T ss_pred             HHHHHHHHHcCCce
Confidence            89999998876653

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.73  E-value=4.3e-17  Score=144.90  Aligned_cols=210  Identities=12%  Similarity=0.053  Sum_probs=141.6

Q ss_pred             HHHHHHHHHhhcCCCc--e-EEecchH-HHHHHHHhccCC----CCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDKADR--A-LCFTSGM-AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~--~-i~~~sG~-~ai~~~~~~~~~----g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      .+.+..++.+.+|.++  . ++++++| .++.++++.+++    ++.|++++.+|.++.    +.+...|+..+++++. 
T Consensus       100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~----kAl~l~Gl~p~~v~~~~  175 (450)
T 3bc8_A          100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF----KSMVTAGFEPVVIENVL  175 (450)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEE
T ss_pred             HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHH----HHHHHcCCeeEEEEeee
Confidence            4567777888888873  3 6666666 444566665554    899999999998886    6667788888888762 


Q ss_pred             -------CHHHHHhhcCC---CceEEEEeCCC-CCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc------CccC-C
Q 022194          128 -------DLDEVASAIGP---WTKLVWVESPT-NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLE-L  189 (301)
Q Consensus       128 -------d~~~l~~~l~~---~~~~v~i~~~~-np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~------~~~~-~  189 (301)
                             |++.+++++++   +..++++.+|+ +.+|.+.|+++|+++|++||+|++||++|+.....      .... .
T Consensus       176 ~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~  255 (450)
T 3bc8_A          176 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG  255 (450)
T ss_dssp             ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS
T ss_pred             cCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhccc
Confidence                   89999999863   23444444444 44668899999999999999999999999964322      1112 2


Q ss_pred             CCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHc--ccccHHHHHHHHHHHHHHHHHH
Q 022194          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEF  267 (301)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~  267 (301)
                      ++|+++.|.||++..|-+  ++++..+++...+...........+.+....|..+.  +.+.+.+.+++..++++++++.
T Consensus       256 ~AD~~v~S~HK~l~a~~~--~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~  333 (450)
T 3bc8_A          256 RIDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQ  333 (450)
T ss_dssp             CCCEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCccCCCchhc--cEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999987754  677777766655544222110011222233333322  2233555566668888889998


Q ss_pred             HHhCC
Q 022194          268 LASHP  272 (301)
Q Consensus       268 l~~~~  272 (301)
                      |++++
T Consensus       334 l~~~~  338 (450)
T 3bc8_A          334 LKKLA  338 (450)
T ss_dssp             HHHHH
T ss_pred             HHhhH
Confidence            88766

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.72  E-value=1.2e-16  Score=145.02  Aligned_cols=210  Identities=17%  Similarity=0.140  Sum_probs=129.5

Q ss_pred             chHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCC-----C----CeEEEcCCCCccHHHHHhhhcccCCcEEEEe
Q 022194           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGT-----G----EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~-----g----~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~  124 (301)
                      +...+++++++++++.+++++++||++|+. ++..+.++     |    |+|++. +.|.....   ......+..+...
T Consensus        74 ~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~---~~~~~~~~~~~~~  149 (467)
T 2oqx_A           74 RSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTTQ---GHSQINGCTVRNV  149 (467)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHHH---HHHHHTTCEEEEC
T ss_pred             chhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccch---hhhhccCcceeec
Confidence            457899999999999988889999998875 55556667     8    888876 43432211   1111122222211


Q ss_pred             ------c------C---CCHHHHHhhcC----CCceEEEEeCCCCCc-cccc---cHHHHHHHHHHcCCEEEEeCCcCC-
Q 022194          125 ------N------T---CDLDEVASAIG----PWTKLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDNSIMS-  180 (301)
Q Consensus       125 ------~------~---~d~~~l~~~l~----~~~~~v~i~~~~np~-G~~~---~l~~l~~l~~~~~~~li~D~~~~~-  180 (301)
                            +      .   .|+++++++++    +++++|++++++||+ |.+.   ++++|+++|++||+++|+|+++.. 
T Consensus       150 ~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e  229 (467)
T 2oqx_A          150 YIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAE  229 (467)
T ss_dssp             BCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHH
T ss_pred             cccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhh
Confidence                  1      1   27899999987    378999999999998 6664   488999999999999999977644 


Q ss_pred             cc----------ccC-ccC------CCCcEEEecccccccCCCCceeeEEEEcch---hHHHHHHHhhh-hcC----CCC
Q 022194          181 PV----------LSR-PLE------LGADIVMHSATKFIAGHSDVMAGVLAVKGE---RLAKELYFLQN-AEG----SGL  235 (301)
Q Consensus       181 ~~----------~~~-~~~------~~~di~~~S~sK~~~g~~g~~~g~~~~~~~---~~~~~~~~~~~-~~~----~~~  235 (301)
                      +.          .+. ...      ...|+++.|+||+++.|   .+|+++++++   .....+..... ..+    ...
T Consensus       230 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (467)
T 2oqx_A          230 NAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGL  306 (467)
T ss_dssp             HHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCC
T ss_pred             hhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---CceEEEecChhHHHHHHHHHHhhhccCCcccccch
Confidence            11          111 111      23678899999999544   2578877765   23333332221 111    112


Q ss_pred             CHHhHHHHHccccc-H-HHHHHHHHHHHHHHHHHHHhC
Q 022194          236 APFDCWICLRGVKT-M-ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       236 ~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.....++..+++. + .+..++..++.+++.+.|++.
T Consensus       307 ~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (467)
T 2oqx_A          307 EGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI  344 (467)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC
Confidence            22222222222121 1 234455667788889999876

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.71  E-value=1.3e-17  Score=151.48  Aligned_cols=246  Identities=13%  Similarity=0.095  Sum_probs=144.9

Q ss_pred             ceeeecCCCCC---CCCccccCeeecceeecCCCCCCCCccc-cCCCC----chHHHHHHHHHhhc--CCCceEEecchH
Q 022194           11 TLLMNFSNEFD---PYGALSTPLYQTATFKQPSATENGPYDY-TRSGN----PTRDALESLLAKLD--KADRALCFTSGM   80 (301)
Q Consensus        11 ~~~~~~~~~~~---~~g~~~~p~~~~~~~~~~~~~~~~~~~y-~~~g~----~~~~~l~~~l~~~~--~~~~~i~~~sG~   80 (301)
                      .++|||. ++.   .+|.. +|.+..+...+...   ..+.+ +.++.    +..+++++.|++++  +.+++++++||+
T Consensus        63 ~~ylD~~-~g~~~~~lGh~-~p~v~~A~~~~~~~---~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGs  137 (472)
T 1ohv_A           63 NRMLDLY-SQISSIPIGYS-HPALVKLVQQPQNV---STFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGS  137 (472)
T ss_dssp             CEEEESS-HHHHTCSSCBT-CHHHHHHHHCGGGH---HHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHH
T ss_pred             CEEEECC-CCHhhcccCCC-CHHHHHHHHHHHhh---cccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCch
Confidence            4689997 443   47874 55454443222110   00011 11222    23666666677766  566888999999


Q ss_pred             HHHHHHHhcc--------C------------------CC---CeEEEcCCCCccHHHHHhhhcc-----cCCc-----EE
Q 022194           81 AALAAVTHLL--------G------------------TG---EEIVAGDDLYGGTDRLLSRVTP-----KTGV-----VV  121 (301)
Q Consensus        81 ~ai~~~~~~~--------~------------------~g---~~Vlv~~~~y~~~~~~~~~~~~-----~~g~-----~~  121 (301)
                      +|+.+++.++        +                  ||   ++|++.++.||++.........     ..+.     ..
T Consensus       138 eA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~  217 (472)
T 1ohv_A          138 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI  217 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCE
T ss_pred             hHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcc
Confidence            9986443332        1                  35   8999999999997543322211     1111     11


Q ss_pred             EEecC-----------------CCHHHHHhhcCC------CceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEE
Q 022194          122 KRVNT-----------------CDLDEVASAIGP------WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLV  174 (301)
Q Consensus       122 ~~~~~-----------------~d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~  174 (301)
                      ..++.                 .|++++++++++      ++++|++++.+|++|.+.+    +++|.++|++||+++|+
T Consensus       218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~  297 (472)
T 1ohv_A          218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV  297 (472)
T ss_dssp             ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence            12210                 147788888865      7899999988889998876    99999999999999999


Q ss_pred             eCCcCC-cccc---CccCCCCc--EEEeccccc-ccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc
Q 022194          175 DNSIMS-PVLS---RPLELGAD--IVMHSATKF-IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (301)
Q Consensus       175 D~~~~~-~~~~---~~~~~~~d--i~~~S~sK~-~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (301)
                      ||+|+. +..+   .....+.+  +.+.||+|+ ++      +|+++ + +.+.. +.......+...++..++++..++
T Consensus       298 DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~------GG~~~-~-~~~~~-~~~~~~~~T~~~~~~~~aaa~aal  368 (472)
T 1ohv_A          298 DEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMT------GGFFH-K-EEFRP-NAPYRIFNTWLGDPSKNLLLAEVI  368 (472)
T ss_dssp             ECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSS------EEEEE-C-GGGSC-SSSSSSCCSSSSCHHHHHHHHHHH
T ss_pred             eCcccCCCCCCCchhccccCCCCCCCEEEEcccccc------CCccC-c-hhhcc-cccccccCccCccHHHHHHHHHHH
Confidence            999973 3221   11223422  334578999 53      25555 4 33321 111112223345677777766666


Q ss_pred             ccHH--HHHHHHHHHHHHHHHHHHh
Q 022194          248 KTMA--LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       248 ~~~~--~~~~~~~~~~~~l~~~l~~  270 (301)
                      +.+.  +..+++.++.+++.+.|++
T Consensus       369 ~~~~~~~~~~~~~~~~~~l~~~L~~  393 (472)
T 1ohv_A          369 NIIKREDLLSNAAHAGKVLLTGLLD  393 (472)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            5442  3456666677777777764

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.70  E-value=1.3e-16  Score=140.31  Aligned_cols=201  Identities=10%  Similarity=0.061  Sum_probs=135.6

Q ss_pred             HHHHhhcCCCc---eEEecchHHH-HHHHHhccCC----CCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------
Q 022194           62 SLLAKLDKADR---ALCFTSGMAA-LAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (301)
Q Consensus        62 ~~l~~~~~~~~---~i~~~sG~~a-i~~~~~~~~~----g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------  127 (301)
                      ++|+.. |.+.   .++++++|.+ +.++++.+++    +|+|++++.+|.+..    ..+...|+.++++++.      
T Consensus       124 d~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~----kAliL~Gl~Pv~V~p~~d~~~~  198 (501)
T 3hl2_A          124 DIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF----KSMITAGFEPVVIENVLEGDEL  198 (501)
T ss_dssp             HHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH----HHHHHTTCEEEEECEEEETTEE
T ss_pred             HHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHH----HHHHHcCCeEEEEeeeeccccc
Confidence            444444 7663   3444444544 4577777664    499999999999887    5566788888888862      


Q ss_pred             --CHHHHHhhcCC---C-ceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc------CccCCC-CcEE
Q 022194          128 --DLDEVASAIGP---W-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELG-ADIV  194 (301)
Q Consensus       128 --d~~~l~~~l~~---~-~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~------~~~~~~-~di~  194 (301)
                        |++.+++++++   + +.+|+.+.+.|..+.+.|+++|+++|++||+++++|++|+.....      .....| +|++
T Consensus       199 ~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~v  278 (501)
T 3hl2_A          199 RTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAF  278 (501)
T ss_dssp             EECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEE
Confidence              78999988863   2 334444455554456689999999999999999999999865421      123457 9999


Q ss_pred             EecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCC--CCCHHhHHHHHc--ccccHHHHHHHHHHHHHHHHHHHHh
Q 022194          195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS--GLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       195 ~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~  270 (301)
                      +.|.||++..|-|  ++++..+++.+.+.+..  ...+.  +.+....++.+.  +.+.+.+.+++..++++++.+.|++
T Consensus       279 VqS~HK~llvpIG--G~ii~~~d~e~l~~~~~--~yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~  354 (501)
T 3hl2_A          279 VQSLDKNFMVPVG--GAIIAGFNDSFIQEISK--MYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKK  354 (501)
T ss_dssp             EEEHHHHHCCCSS--CEEEEESCHHHHHHHHH--TSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecccccceeecC--ceEEEeCCHHHHHHHHH--hCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999876633  45555777666664322  22222  222222344333  3345677888888889999999887


Q ss_pred             C
Q 022194          271 H  271 (301)
Q Consensus       271 ~  271 (301)
                      +
T Consensus       355 l  355 (501)
T 3hl2_A          355 L  355 (501)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.69  E-value=8e-17  Score=144.40  Aligned_cols=250  Identities=15%  Similarity=0.122  Sum_probs=158.9

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-~~~~~i~~~sG~~ai~~~~   87 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+  .  ...+.. ..+...++.+.|++.+ +.+.+.+++||++|+...+
T Consensus        87 ~~ylD~~~g~~~~~lGH~hp~v~~Av~-~q~~--~--~~~~~~-~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~Ai  160 (454)
T 4ao9_A           87 HRYADFIAEYTAGVYGHSAPEIRDAVI-EAMQ--G--GINLTG-HNLLEGRLARLICERFPQIEQLRFTNSGTEANLMAL  160 (454)
T ss_dssp             CEEEESSGGGGTTTTCSCCHHHHHHHH-HHHH--T--CSCCCS-EESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHH
T ss_pred             CEEEEccccHHhhcccCCCHHHHHHHH-HHHh--c--CCCccC-CcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHH
Confidence            378888643  3447876555444332 2211  1  111111 1233678888888877 5567888899999986444


Q ss_pred             hcc---CCCCeEEEcCCCCccHHHHHhhh--cccCCcEEEEecCCCHHHHHhhcC---CCceEEEEeCCCCCcccccc--
Q 022194           88 HLL---GTGEEIVAGDDLYGGTDRLLSRV--TPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD--  157 (301)
Q Consensus        88 ~~~---~~g~~Vlv~~~~y~~~~~~~~~~--~~~~g~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~--  157 (301)
                      ++.   ...++|+....+||+........  .......+..++.+|.+.+++.+.   +++.+|+++......|.+.|  
T Consensus       161 klAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~  240 (454)
T 4ao9_A          161 TAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQP  240 (454)
T ss_dssp             HHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCH
T ss_pred             HHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCch
Confidence            432   34578999999999864211000  112234566777789999988886   46889999988888888876  


Q ss_pred             --HHHHHHHHHHcCCEEEEeCCcCCccccC---ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh----h
Q 022194          158 --IRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----Q  228 (301)
Q Consensus       158 --l~~l~~l~~~~~~~li~D~~~~~~~~~~---~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~----~  228 (301)
                        +++|.++|++||+++|+||+++ |....   ....|....+.+++|.++|  |+..|.+.++.+ +++.+...    .
T Consensus       241 ~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~gK~lgg--G~Piga~~~~~e-i~~~~~~~~~~~~  316 (454)
T 4ao9_A          241 DFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLGKYIGG--GMSFGAFGGRAD-VMALFDPRTGPLA  316 (454)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEEGGGGT--TSSCEEEEECHH-HHGGGCTTTCSCC
T ss_pred             hhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEeccccCC--CCcceeeeeHHH-HHHHHhhccCCcc
Confidence              9999999999999999999997 32221   1123443344469999965  356788887754 44432211    1


Q ss_pred             hhcCCCCCHHhHHHHHcccccH--HHHHHHHHHHHHHHHHHHHh
Q 022194          229 NAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~  270 (301)
                      +..+.+.+|..+++.+..++.+  .+..+++.++.++|++.|++
T Consensus       317 h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~  360 (454)
T 4ao9_A          317 HSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNA  360 (454)
T ss_dssp             CCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence            2223445677777777766554  44556777777777777764

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.68  E-value=6.6e-16  Score=135.52  Aligned_cols=207  Identities=15%  Similarity=0.091  Sum_probs=146.2

Q ss_pred             HHHHHHHHHhhcCCC--c-eEEec-chHHHHH-HHHhccCC--CCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           57 RDALESLLAKLDKAD--R-ALCFT-SGMAALA-AVTHLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~-~i~~~-sG~~ai~-~~~~~~~~--g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .++.++.++++++++  + +++++ +||++++ ++..++.+  ||+|++....+.+.  .|...+++.|..++.++.+  
T Consensus        60 ~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~~~  137 (377)
T 3e77_A           60 INNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKLGS  137 (377)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCCSS
T ss_pred             HHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccCCC
Confidence            678889999999986  2 45544 5689986 66677765  89998777766654  3457788889888877653  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC-ccCCCCcEEEeccccccc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~S~sK~~~  203 (301)
                         ++++++..+++++++|.+++..|.+|.+.|+     +|+++|+++++|.+++.+..+- ..+.+  ++++|.+|++ 
T Consensus       138 ~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~-  209 (377)
T 3e77_A          138 YTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNV-  209 (377)
T ss_dssp             SCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTT-
T ss_pred             cCCCCChHHhccCCCccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEeccccc-
Confidence               4567777788899999999999999999998     4778999999999999988753 33444  6889999999 


Q ss_pred             CCCCceeeEEEEcchhHHH-------HH--H-Hhh-hhcCCCCCHHhHHHHHccccc------HHHHHHHHHHHHHHHHH
Q 022194          204 GHSDVMAGVLAVKGERLAK-------EL--Y-FLQ-NAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAE  266 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~~~~-------~~--~-~~~-~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~  266 (301)
                      ||+|+  |+++.+++.+.+       .+  . ... .....+.+....+.+..+++.      ++...++..+.++++.+
T Consensus       210 gp~G~--g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~  287 (377)
T 3e77_A          210 GSAGV--TVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYE  287 (377)
T ss_dssp             SCTTC--EEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcc--EEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            79985  788887654210       00  0 111 112234444445554444443      34555677788888999


Q ss_pred             HHHhCCCcc
Q 022194          267 FLASHPRVK  275 (301)
Q Consensus       267 ~l~~~~~v~  275 (301)
                      .|++.+++.
T Consensus       288 ~L~~~~g~~  296 (377)
T 3e77_A          288 IIDNSQGFY  296 (377)
T ss_dssp             HHHTSTTSE
T ss_pred             HHHhcCCce
Confidence            998877653

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.66  E-value=6.2e-15  Score=129.20  Aligned_cols=213  Identities=19%  Similarity=0.189  Sum_probs=135.8

Q ss_pred             CCchHHHHH----HHHHhhcCCCce-----EEecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHHh----hhcccCC
Q 022194           53 GNPTRDALE----SLLAKLDKADRA-----LCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS----RVTPKTG  118 (301)
Q Consensus        53 g~~~~~~l~----~~l~~~~~~~~~-----i~~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~----~~~~~~g  118 (301)
                      |....++++    ++.+++|+++.+     +=.-||+.|. .++.++++|||+|+..+..+.++...-.    ......|
T Consensus        94 Gce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg  173 (490)
T 3ou5_A           94 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS  173 (490)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------
T ss_pred             CChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCccccccc
Confidence            444455555    556788998853     5567898776 6889999999999998888777653210    0011112


Q ss_pred             cEEEEec----C----CCHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----Ccccc
Q 022194          119 VVVKRVN----T----CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLS  184 (301)
Q Consensus       119 ~~~~~~~----~----~d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~-----~~~~~  184 (301)
                      ..+..++    .    .|.|++++... .++++|+.....+|  ...|+++++++|++.|++|++|.+|.     .+.++
T Consensus       174 ~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~p  251 (490)
T 3ou5_A          174 IFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP  251 (490)
T ss_dssp             ------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSC
T ss_pred             ccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCccCc--cccCHHHHHHHHhhcccEEEechhhhhhhhcccccC
Confidence            2112221    1    18888887776 58999998777776  47899999999999999999999996     45678


Q ss_pred             CccCCCCcEEEecccccccCCCCceeeEEEEcch--------------hHHHHHHHhhhhcC-CCCCHHhHHH----HHc
Q 022194          185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAEG-SGLAPFDCWI----CLR  245 (301)
Q Consensus       185 ~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~~~----~~~  245 (301)
                      +|... +|++++|.||+|.||   |+|+|+++++              .+.+++........ .+......++    +.+
T Consensus       252 sP~~~-ADvVTtTTHKTLrGP---rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~E  327 (490)
T 3ou5_A          252 SPFKH-ADIVTTTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ  327 (490)
T ss_dssp             CGGGT-CSEEEEESSSTTCSC---SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH
T ss_pred             Ccccc-ceEEeccccccccCC---CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHH
Confidence            88876 899999999999988   5799998763              34444433222111 1111111111    222


Q ss_pred             c-cccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          246 G-VKTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       246 ~-l~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      + ...+.++.++..+|++.|.+.|.+.
T Consensus       328 a~~p~fk~Ya~qVv~NAkaLA~~L~~~  354 (490)
T 3ou5_A          328 ACTPMFREYSLQVLKNARAMADALLER  354 (490)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhHhHHHHHHHHHHHHHHHHHHHHhC
Confidence            2 2346788899999999999999886

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.63  E-value=1.2e-15  Score=134.42  Aligned_cols=203  Identities=12%  Similarity=0.039  Sum_probs=138.0

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEe-cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---
Q 022194           56 TRDALESLLAKLDKAD---RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~---~~i~~-~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---  127 (301)
                      ..++.++.++++++++   +++++ ++||++++ ++..++++||+|++....+.+..  |...++..| ++..++.+   
T Consensus        73 ~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~--~~~~a~~~G-~v~~v~~~~~~  149 (386)
T 3qm2_A           73 VAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAAS--AIKEAKKYC-APQIIDAKITV  149 (386)
T ss_dssp             CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHH--HHHHHTTTS-EEEEEECEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHH--HHHHHHHhC-CeEEEecCccc
Confidence            3788999999999986   24553 56789986 66778899999876555555542  445567778 77777643   


Q ss_pred             -----CHHHHHhhcCCCceEEEEeCCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCccccC-ccCCCCcEEEecccc
Q 022194          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATK  200 (301)
Q Consensus       128 -----d~~~l~~~l~~~~~~v~i~~~~np~G~~-~~l~~l~~l~~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~S~sK  200 (301)
                           ++++++.++++++++|.+++..|.+|.+ .|+++|.     +|+++++|.+++.+..+- ..+.  +++++|.+|
T Consensus       150 ~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~--~~~~~s~hK  222 (386)
T 3qm2_A          150 DGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRY--GVIYAGAQK  222 (386)
T ss_dssp             TTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGC--SEEEEETTT
T ss_pred             CCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCcccc--CEEEEeccc
Confidence                 3567788888899999999999999996 8999886     799999999999988763 3334  467899999


Q ss_pred             cccCCCCceeeEEEEcchhHH----------HHHHHhhh-hcCCCCCHHhHHHHHccccc------HHHHHHHHHHHHHH
Q 022194          201 FIAGHSDVMAGVLAVKGERLA----------KELYFLQN-AEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQK  263 (301)
Q Consensus       201 ~~~g~~g~~~g~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~  263 (301)
                      ++ ||+|+  |+++.+++.+.          +....... ....+.+....+.+..+++.      +++..++..+.+++
T Consensus       223 ~l-GP~G~--g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~  299 (386)
T 3qm2_A          223 NI-GPAGL--TLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAEL  299 (386)
T ss_dssp             TT-CCTTE--EEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             cc-CCCcc--EEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            99 79884  88888765421          00001111 11123333333344344433      34445666777778


Q ss_pred             HHHHHHhC
Q 022194          264 IAEFLASH  271 (301)
Q Consensus       264 l~~~l~~~  271 (301)
                      +.+.|++.
T Consensus       300 l~~~l~~~  307 (386)
T 3qm2_A          300 LYGVIDNS  307 (386)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHC
Confidence            88888765

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.61  E-value=4.2e-15  Score=133.74  Aligned_cols=253  Identities=16%  Similarity=0.153  Sum_probs=150.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~~   85 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+..  ....+.....+...++.+.|.++..   .+.+++++||++|+..
T Consensus        64 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~q~~~~--~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~  140 (456)
T 4atq_A           64 NSFIDLGSGIAVTSVGASDPAVVAAVQ-EAAAHF--THTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVEN  140 (456)
T ss_dssp             CEEEESSHHHHTCTTCTTCHHHHHHHH-HHHHHC--SCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHH
T ss_pred             CEEEEccccHHHHhcCCCCHHHHHHHH-HHHhhc--cCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHH
Confidence            378888644  4558876655554432 221110  1111111123446778888988874   3467788999999864


Q ss_pred             HHhc---cCCCCeEEEcCCCCccHHHHHhhhc----------ccCCcEEEEecCC-----------CH-------HHHHh
Q 022194           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRVT----------PKTGVVVKRVNTC-----------DL-------DEVAS  134 (301)
Q Consensus        86 ~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~----------~~~g~~~~~~~~~-----------d~-------~~l~~  134 (301)
                      .+.+   ....++|+....+||+.........          ......+..++..           +.       +.++.
T Consensus       141 AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~  220 (456)
T 4atq_A          141 AVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEK  220 (456)
T ss_dssp             HHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHH
Confidence            4433   3456789999999998753321111          0111233334321           12       22333


Q ss_pred             hcC-CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC----ccccCccCCCCcEEEecccccccCC
Q 022194          135 AIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS----PVLSRPLELGADIVMHSATKFIAGH  205 (301)
Q Consensus       135 ~l~-~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~----~~~~~~~~~~~di~~~S~sK~~~g~  205 (301)
                      .+. +++.+|+++......|.+.+    +++|.++|++||+++|+||++..    |.+.....+|....+.+++|.++| 
T Consensus       221 ~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lgg-  299 (456)
T 4atq_A          221 QIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAG-  299 (456)
T ss_dssp             HTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGT-
T ss_pred             hhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccC-
Confidence            333 47889999988887787754    99999999999999999999864    223333334443334458899865 


Q ss_pred             CCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHH
Q 022194          206 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       206 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~  269 (301)
                       |+..|.++++++ +.+.+....+..+++-++.+++++++.++.+.+  ..++..+..+++.+.|+
T Consensus       300 -g~P~~av~~~~~-i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~  363 (456)
T 4atq_A          300 -GLPLSAITGRAD-LLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLR  363 (456)
T ss_dssp             -TSSCEEEEEEHH-HHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             -cCCceeeEecHH-HHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence             456788877754 444333334445566788888888888776632  23444444445555544

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.56  E-value=5.3e-14  Score=122.92  Aligned_cols=201  Identities=12%  Similarity=0.006  Sum_probs=134.3

Q ss_pred             HHHHHHHHHhhcCCC---ceEE-ecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           57 RDALESLLAKLDKAD---RALC-FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~-~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .++.++.++++++++   ++++ +++||++++ ++..++ +||++++....+.+.  .|...++..|.+++.++.+    
T Consensus        52 ~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~--~~~~~a~~~G~~v~~~~~~~~g~  128 (361)
T 3m5u_A           52 HFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTK--KAIKEAQILGVNVKTVASSEESN  128 (361)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHH--HHHHHHHHTTCCEEEEEECTTTT
T ss_pred             HHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHH--HHHHHHHHcCCceEEEecccCcC
Confidence            778889999999984   3455 355579986 666677 788663222233333  2334556678777777643    


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccC
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g  204 (301)
                         +++.  + +++++++|.+++..|.+|.+.|.     +++ +|+++++|.+++.+..+-... +.|++++|.||++ |
T Consensus       129 ~~~~~~~--~-l~~~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~-~~d~~~~s~~K~~-g  197 (361)
T 3m5u_A          129 FDHIPRV--E-FSDNADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS-NIALFYGGVQKNA-G  197 (361)
T ss_dssp             SCSCCCC--C-CCTTSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT-TEEEEEEETTTTS-S
T ss_pred             CCcCChh--h-cCCCCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc-cCCEEEEechhcc-C
Confidence               2344  3 78899999999999999998662     333 499999999999988764443 4799999999999 7


Q ss_pred             CCCceeeEEEEcchhHHHHHHH-----------h--hhhcCCCCCHHhHHHHHccccc------HHHHHHHHHHHHHHHH
Q 022194          205 HSDVMAGVLAVKGERLAKELYF-----------L--QNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIA  265 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~  265 (301)
                      |+|+  |+++.+++.+ +.+..           .  ......+.+....+.+..+++.      ++...++..+.++++.
T Consensus       198 p~G~--g~l~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~  274 (361)
T 3m5u_A          198 ISGL--SCIFIRKDML-ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLY  274 (361)
T ss_dssp             CTTC--EEEEEEHHHH-HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCcc--EEEEEcHHHH-hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            9985  8888886544 22211           0  0111134444444444444432      4555677778888899


Q ss_pred             HHHHhCCCc
Q 022194          266 EFLASHPRV  274 (301)
Q Consensus       266 ~~l~~~~~v  274 (301)
                      +.|++++++
T Consensus       275 ~~L~~~~g~  283 (361)
T 3m5u_A          275 ECIDLSNGF  283 (361)
T ss_dssp             HHHHTSTTS
T ss_pred             HHHHHCCCe
Confidence            999887755

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.53  E-value=2.3e-13  Score=122.84  Aligned_cols=265  Identities=16%  Similarity=0.127  Sum_probs=156.3

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCC-C--CchHHHHHHHHHhhcC--CCceEEecchHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-G--NPTRDALESLLAKLDK--ADRALCFTSGMAAL   83 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g--~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai   83 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+  +..  .+... +  ++...+|.+.|.++..  .+.+.+.+||++|+
T Consensus        67 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~q~~--~l~--~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~  141 (473)
T 4e3q_A           67 RRYLDANSGLWNMVAGFDHKGLIDAAK-AQYE--RFP--GYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEAN  141 (473)
T ss_dssp             CEEEETTTTTTTCTTCSCCHHHHHHHH-HHHH--HCC--CCCCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHH
T ss_pred             CEEEEcccCHHHhhccCCCHHHHHHHH-HHHH--hcc--cccccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHH
Confidence            478898643  4457876655544332 2211  101  12222 2  2446788899998874  45788899999998


Q ss_pred             HHHHhcc---------CCCCeEEEcCCCCccHHHHHhhhc----------ccCCcEEEEecC--------C--------C
Q 022194           84 AAVTHLL---------GTGEEIVAGDDLYGGTDRLLSRVT----------PKTGVVVKRVNT--------C--------D  128 (301)
Q Consensus        84 ~~~~~~~---------~~g~~Vlv~~~~y~~~~~~~~~~~----------~~~g~~~~~~~~--------~--------d  128 (301)
                      ...+++.         ....+|+.....||+.....-...          ...+......+.        .        .
T Consensus       142 e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  221 (473)
T 4e3q_A          142 DTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARL  221 (473)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHH
Confidence            6444432         124578888999998643211111          111222222221        0        1


Q ss_pred             HHHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCc-c---ccCccCCCCcEEEe
Q 022194          129 LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-V---LSRPLELGADIVMH  196 (301)
Q Consensus       129 ~~~l~~~l~----~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~-~---~~~~~~~~~di~~~  196 (301)
                      .+++++.+.    +++.+|+++......|.+.+    +++|.++|++||+++|+||+++.. -   +......|....+.
T Consensus       222 ~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~  301 (473)
T 4e3q_A          222 ARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAI  301 (473)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEE
T ss_pred             HHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChH
Confidence            233444432    46788999988887787754    999999999999999999998643 2   22222334433344


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHHHh-------hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEF  267 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~  267 (301)
                      +++|.++| +.+..|.++++++ +.+.+...       .+..+.+-+|.+++++++.++.+.  ...++..+..+++.+.
T Consensus       302 t~~K~l~g-G~~Pl~av~~~~~-i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~  379 (473)
T 4e3q_A          302 ISSKNLTA-GFFPMGAVILGPE-LSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEER  379 (473)
T ss_dssp             EECGGGGT-TSSCCEEEEECHH-HHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred             HhcccccC-CCCCcccccccHH-HHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHH
Confidence            58999965 3356788888754 44443321       123345567888888888877653  2335555555666666


Q ss_pred             HHh---CCCcceEecCCC
Q 022194          268 LAS---HPRVKKVNYAGL  282 (301)
Q Consensus       268 l~~---~~~v~~v~~p~~  282 (301)
                      |++   ++.|..++.-|+
T Consensus       380 L~~l~~~~~v~~vRG~Gl  397 (473)
T 4e3q_A          380 LKHIAERPNIGEYRGIGF  397 (473)
T ss_dssp             HHHHTTSTTEEEEEEETT
T ss_pred             HHHHhcCCCeeEEeecce
Confidence            654   566666655443

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.44  E-value=2.1e-14  Score=137.95  Aligned_cols=265  Identities=9%  Similarity=0.027  Sum_probs=154.2

Q ss_pred             eeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEecchHHHHHHH
Q 022194           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAAV   86 (301)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~---~~~~i~~~sG~~ai~~~   86 (301)
                      .++||.++  +..+|...+|.+..+...+.+.  .....+..+.++...+|.++|+++.+   .+.+++++||++|+...
T Consensus       381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~--l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~A  458 (831)
T 4a0g_A          381 QQFDACASWWTQGPDPTFQAELAREMGYTAAR--FGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIA  458 (831)
T ss_dssp             EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHH--HSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHH
T ss_pred             heeeecccHhhcCCCCCCCHHHHHHHHHHHhh--cccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHH
Confidence            68999754  7889988455555443233111  01111111234567899999999986   45788999999988533


Q ss_pred             Hhcc------C------------CCCeEEEcCCCCccHHHHHhhhccc--------------CCc-------------EE
Q 022194           87 THLL------G------------TGEEIVAGDDLYGGTDRLLSRVTPK--------------TGV-------------VV  121 (301)
Q Consensus        87 ~~~~------~------------~g~~Vlv~~~~y~~~~~~~~~~~~~--------------~g~-------------~~  121 (301)
                      +.+.      +            ...+|+..+..||+.....-.....              .+.             ..
T Consensus       459 lK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  538 (831)
T 4a0g_A          459 LKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWN  538 (831)
T ss_dssp             HHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEE
T ss_pred             HHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceE
Confidence            3322      1            1347888899998764332122110              000             01


Q ss_pred             EEecC------------CC------------------HHHHHhhcC--------CCceEEEEeCC-CCCcccccc----H
Q 022194          122 KRVNT------------CD------------------LDEVASAIG--------PWTKLVWVESP-TNPRQQICD----I  158 (301)
Q Consensus       122 ~~~~~------------~d------------------~~~l~~~l~--------~~~~~v~i~~~-~np~G~~~~----l  158 (301)
                      ...+.            .+                  .+.+++.+.        +++.+|+++.. ++..|...+    +
T Consensus       539 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L  618 (831)
T 4a0g_A          539 ISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQ  618 (831)
T ss_dssp             EECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHH
T ss_pred             ecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHH
Confidence            11110            11                  145666664        35788899986 787787764    9


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCC-cc---ccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh------h
Q 022194          159 RKIAEMAHAHGALLLVDNSIMS-PV---LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL------Q  228 (301)
Q Consensus       159 ~~l~~l~~~~~~~li~D~~~~~-~~---~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~------~  228 (301)
                      ++|.++|++||+++|+||++.. |.   .......|....+.+++|.++| +.++.|+++++++ +.+.+...      .
T Consensus       619 ~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiitlsK~L~g-G~~Plgav~~~~~-i~~~~~~~~~~~~~~  696 (831)
T 4a0g_A          619 RVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTG-GMVPLAVTLATDA-VFDSFSGDSKLKALL  696 (831)
T ss_dssp             HHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEEECGGGGT-TSSCCEEEEECHH-HHHTTCSSCGGGSCC
T ss_pred             HHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEEEeccccc-CccCcEEEEECHH-HHHHHhcccccccce
Confidence            9999999999999999999863 22   2221222333333469999965 2256788888754 44433221      1


Q ss_pred             hhcCCCCCHHhHHHHHcccccHHH--HHHHHHHH--------HHHHHHHHHhCCCcceEecC
Q 022194          229 NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDN--------AQKIAEFLASHPRVKKVNYA  280 (301)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~--------~~~l~~~l~~~~~v~~v~~p  280 (301)
                      +..+.+.++.++++++..++.+.+  ..++..++        .+.+.+.+++++.|..++..
T Consensus       697 hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~  758 (831)
T 4a0g_A          697 HGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVI  758 (831)
T ss_dssp             CCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEE
T ss_pred             eecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeec
Confidence            334456688888888777765532  11111111        12345566777777666543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=85.74  E-value=4.2  Score=27.79  Aligned_cols=90  Identities=22%  Similarity=0.192  Sum_probs=55.0

Q ss_pred             ceEEecchHHHHHHHHhccCCC-CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCC
Q 022194           72 RALCFTSGMAALAAVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (301)
Q Consensus        72 ~~i~~~sG~~ai~~~~~~~~~g-~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~n  150 (301)
                      .+++++.|.-+...+..+.+.| .+|.+.+..-...     ......++.....+..+.+.+++.+. ...+|+.+.+..
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~~~~-~~d~vi~~~~~~   80 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAAL-----AVLNRMGVATKQVDAKDEAGLAKALG-GFDAVISAAPFF   80 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHH-----HHHHTTTCEEEECCTTCHHHHHHHTT-TCSEEEECSCGG
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHH-----HHHHhCCCcEEEecCCCHHHHHHHHc-CCCEEEECCCch
Confidence            3555655654444555555667 5676654432111     11225677888888888888888875 567777655422


Q ss_pred             CccccccHHHHHHHHHHcCCEEE
Q 022194          151 PRQQICDIRKIAEMAHAHGALLL  173 (301)
Q Consensus       151 p~G~~~~l~~l~~l~~~~~~~li  173 (301)
                            ....+.+.|.+.|+..+
T Consensus        81 ------~~~~~~~~~~~~g~~~~   97 (118)
T 3ic5_A           81 ------LTPIIAKAAKAAGAHYF   97 (118)
T ss_dssp             ------GHHHHHHHHHHTTCEEE
T ss_pred             ------hhHHHHHHHHHhCCCEE
Confidence                  23678888888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1ibja_	380	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale	1e-79
d1y4ia1	397	c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci	5e-76
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	4e-69
d1n8pa_	393	c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba	2e-61
d1cs1a_	384	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E	8e-61
d2ctza1	421	c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry	8e-60
d1qgna_	398	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C	1e-57
d1e5ea_	394	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	6e-55
d1pffa_	331	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	2e-50
d1cl1a_	391	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche	1e-36
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	6e-31
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	8e-11
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	2e-10
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	6e-10
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	2e-09
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	1e-07
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	3e-07
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	3e-07
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	4e-07
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-06
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	6e-06
d1mdoa_	376	c.67.1.4 (A:) Aminotransferase ArnB {Salmonella ty	1e-05
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	1e-05
d1jf9a_	405	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	3e-05
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	2e-04
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	3e-04
d1bs0a_	383	c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a	4e-04
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	0.002

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  244 bits (623), Expect = 1e-79
 Identities = 241/285 (84%), Positives = 268/285 (94%)

Query: 8   GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKL 67
            VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDALESLLAKL
Sbjct: 2   SVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKL 61

Query: 68  DKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
           DKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT 
Sbjct: 62  DKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT 121

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
            LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMSPVLSRPL
Sbjct: 122 KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL 181

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
           ELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+
Sbjct: 182 ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI 241

Query: 248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+
Sbjct: 242 KTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHF 286

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

 Score =  235 bits (601), Expect = 5e-76
 Identities = 127/305 (41%), Positives = 184/305 (60%), Gaps = 11/305 (3%)

Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRD 58
           G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR GNPT D
Sbjct: 7   GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 66

Query: 59  ALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE  LA L++ +  L   SG++A+      L   G+ IV+   +YG T   LS   PK 
Sbjct: 67  ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 126

Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
           G+ V+ V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+
Sbjct: 127 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 186

Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGLA 236
            MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +     L++  G  ++
Sbjct: 187 FMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 246

Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVL 296
           PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +EL   Q+ 
Sbjct: 247 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS 306

Query: 297 SDNGP 301
              G 
Sbjct: 307 LPGGI 311

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score =  217 bits (554), Expect = 4e-69
 Identities = 111/305 (36%), Positives = 178/305 (58%), Gaps = 11/305 (3%)

Query: 7   PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTR 57
           PG +T  ++   +     GAL  P+YQTATF  P+          E   + Y+R  NPT 
Sbjct: 2   PGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTL 61

Query: 58  DALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK 116
           + LE+ +A L+  +  L   SGM A+ + +  LL  G+E++ G+ LYG T   L     +
Sbjct: 62  NLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE 121

Query: 117 TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176
            GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++VDN
Sbjct: 122 FGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDN 181

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-FLQNAEGSGL 235
           +  +P L RPLELGAD+V+HSATK+++GH D+ AG++      + +     L++  G+ L
Sbjct: 182 TYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVL 241

Query: 236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV 295
           +P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L   Q+
Sbjct: 242 SPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQM 301

Query: 296 LSDNG 300
               G
Sbjct: 302 SQPGG 306

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  197 bits (502), Expect = 2e-61
 Identities = 109/296 (36%), Positives = 160/296 (54%), Gaps = 6/296 (2%)

Query: 2   SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDAL 60
           +++E    +T  ++     D +G++  P+  + TFKQ S     G Y+Y+RS NP R+ L
Sbjct: 1   TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           E  +A L+ A   L F+SG A  A +   L  G   V+  D+YG               V
Sbjct: 61  ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYG-GTHRYFTKVANAHGV 119

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH----GALLLVDN 176
                   L+++   I   TKLVW+E+PTNP  ++ DI+K+A++   H      +L+VDN
Sbjct: 120 ETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           + +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPS 239

Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           PFD W+  RG+KT+ LRV +   +A KIAEFLA+             +   +    
Sbjct: 240 PFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVV 295

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

 Score =  195 bits (497), Expect = 8e-61
 Identities = 108/287 (37%), Positives = 166/287 (57%), Gaps = 2/287 (0%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD 68
           +T+ +      D  YG +  P++ ++T+      E   +DY+R GNPTRD ++  LA+L+
Sbjct: 4   ATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELE 63

Query: 69  KADRALCFTSGMAALAAVTHLLGTGEE-IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
               A+   +GM+A+  VT +     + +VA  D YGG+ RL   +  +    V  V+  
Sbjct: 64  GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG 123

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
           D   + +A+    KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL
Sbjct: 124 DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL 183

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
            LGAD+V+HS TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG+
Sbjct: 184 ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGL 243

Query: 248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           +T+  R+E  Q NAQ I ++L + P VKK+ +  LPE+ GHE+   Q
Sbjct: 244 RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQ 290

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

 Score =  194 bits (493), Expect = 8e-60
 Identities = 99/334 (29%), Positives = 139/334 (41%), Gaps = 43/334 (12%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDAL 60
            TL ++   E +P   +   P+Y T ++   S          +     Y+R  NPT D L
Sbjct: 4   ETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVL 63

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEE-IVAGDDLYGGTDRLLSRV-TPKTG 118
           E  LA L+    AL   SG AA       L    + IV+  +LYGGT             
Sbjct: 64  EKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGI 123

Query: 119 VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI 178
            V         +E  +     T+  WVES  NP   I D+  +A+ A   G  L+VDN+ 
Sbjct: 124 EVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTF 183

Query: 179 -MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK--------------- 222
            M   L RPL  GA +V HS TK++ GH  V+AG +   G    +               
Sbjct: 184 GMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH 243

Query: 223 ---------ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE 266
                    EL F+  A        G  L PF+ W+ L G++T++LR E+  +N   +A 
Sbjct: 244 GLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAH 303

Query: 267 FLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG 300
           +L   P+V  VNY GLP HP H+          G
Sbjct: 304 WLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPG 337

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  188 bits (478), Expect = 1e-57
 Identities = 85/282 (30%), Positives = 134/282 (47%), Gaps = 11/282 (3%)

Query: 23  YGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
             A++TP+  T+ +     +E           ++Y R GNPT   LE  ++ L+ A+  L
Sbjct: 27  TDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTL 86

Query: 75  CFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS 134
              SGM A   +   L      +          R+          +   V          
Sbjct: 87  LMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALE 146

Query: 135 AIGPW--TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 192
                    L + ESPTNP  +  DI  ++++ H  GAL+ +D +  +P+  + L LGAD
Sbjct: 147 LALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGAD 206

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL 252
           +V+HSATKF+ GH+DV+AG       +L  E+  L +  G  L P   ++ +RG+KT+ L
Sbjct: 207 LVLHSATKFLGGHNDVLAGC-ISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHL 265

Query: 253 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           RV++Q   A ++AE L +HP+V+ V Y GL  HP H +   Q
Sbjct: 266 RVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQ 307

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

 Score =  181 bits (459), Expect = 6e-55
 Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 11/294 (3%)

Query: 10  STLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALE 61
           +T  ++ + + D +GA   P+YQT+TF   +          +   Y YTR GNPT   LE
Sbjct: 6   ATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLE 65

Query: 62  SLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
             +A L+K +  +  +SGM A+AA V  +L  G+ +++ + LYG T  L      K G+ 
Sbjct: 66  GKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQ 125

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIM 179
           V  +NT    EV   + P TK+V+ E+P NP  +I D  R   +     G L++ DN+  
Sbjct: 126 VDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFC 185

Query: 180 SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-FLQNAEGSGLAPF 238
           SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L +     +++  GS ++P 
Sbjct: 186 SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPH 245

Query: 239 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           D W+  RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G  +H GH++  
Sbjct: 246 DAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAK 299

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

 Score =  167 bits (424), Expect = 2e-50
 Identities = 92/237 (38%), Positives = 142/237 (59%), Gaps = 3/237 (1%)

Query: 59  ALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE  +AKL+ A+      SGM A+ A+V   L  G+ +++ D LYG T  L      K 
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP-RQQICDIRKIAEMAHAHGALLLVDN 176
           GV V  ++      +   + P T++V+ E+P NP  + I     + +       L++VDN
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGL 235
           +  SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++  + + +AK     +++  G+ +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181

Query: 236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           +P D W+  RG  T+ +RV++  +NAQK+AEFL  H  VKKV Y GLP+HPGHE+  
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAK 238

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

 Score =  132 bits (333), Expect = 1e-36
 Identities = 72/304 (23%), Positives = 137/304 (45%), Gaps = 14/304 (4%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---------TENGPYDYTRSGNPTRDA 59
            T L+N         GA+++ + + ++    S            NG   Y R G  T  +
Sbjct: 3   DTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFS 62

Query: 60  LESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118
           L+  + +L+     + F  G AA+A ++   +  G+ ++  +  Y  +    S++  K G
Sbjct: 63  LQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG 122

Query: 119 VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP--RQQICDIRKIAEMAHAHGALLLVDN 176
           V     +     ++   + P TK+V++ESP +             A  +    A++++DN
Sbjct: 123 VTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 182

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           +  + VL + L+ G D+ + +ATK++ GHSD M G          +         G  + 
Sbjct: 183 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN-AYLMGQMVD 241

Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVL 296
               +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP   GHE       
Sbjct: 242 ADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT 301

Query: 297 SDNG 300
             +G
Sbjct: 302 GSSG 305

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  116 bits (292), Expect = 6e-31
 Identities = 44/265 (16%), Positives = 84/265 (31%), Gaps = 19/265 (7%)

Query: 36  FKQPSATENGPYDYTRSGNPTRDALESLLAKL--DKADRALCFTSGMAA-LAAVTHLLGT 92
           F      +     Y  S        E  L  L  D+ D+ + F    +A LA +  L   
Sbjct: 32  FLIDEKDKALLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPK 91

Query: 93  GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 152
                  +     +   + R         K   +  + E+ + I   T ++   S  + +
Sbjct: 92  KVIHYLPELPGHPS---IERSCKIVNA--KYFESDKVGEILNKIDKDTLVIITGSTMDLK 146

Query: 153 Q-QICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHS 206
             ++ + +K+   A    A++ VD++  + V         L+LGAD+V+ S  K + G  
Sbjct: 147 VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPR 206

Query: 207 DVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQDNAQKIA 265
             +        + L  ++Y      G    P       R +K   L R+ K  + A+   
Sbjct: 207 GGLL----AGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFD 262

Query: 266 EFLASHPRVKKVNYAGLPEHPGHEL 290
                    +               
Sbjct: 263 LSKIEKLNKELKAIDDNINIVYERT 287

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score = 59.9 bits (144), Expect = 8e-11
 Identities = 49/260 (18%), Positives = 88/260 (33%), Gaps = 24/260 (9%)

Query: 51  RSGNPTRDALE---SLLAKLDKADRA-LCFTSG------MAALAAVTHLLGTGEEIVAGD 100
           R G    +A++   + +A L  AD   + FTSG      +A   A       G+ I+   
Sbjct: 41  RFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSK 100

Query: 101 DLYGGTDRLLSRVTPKTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQI 155
             +        ++  + G  V  +        DL E+ +A+   T LV +    N    +
Sbjct: 101 TEHKAVLDTCRQL-EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVV 159

Query: 156 CDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLA 214
            DI  I EM  A G +  VD +     L     +L  D++  S  K          G L 
Sbjct: 160 QDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPK---GIGALY 216

Query: 215 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV 274
           V+     K    ++     G            V  +    E  +   +++A  +     +
Sbjct: 217 VR----RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGL 272

Query: 275 KKVNYAGLPEHPGHELHYSQ 294
           +   + G+ +     L+   
Sbjct: 273 RNRLWNGIKDIEEVYLNGDL 292

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (140), Expect = 2e-10
 Identities = 24/227 (10%), Positives = 62/227 (27%), Gaps = 19/227 (8%)

Query: 77  TSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN----TCDLDEV 132
            S       + H     + I+          + +     +  V+   +       DL  V
Sbjct: 124 MSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAV 183

Query: 133 ASA----IGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN--SIMSPVLSRP 186
            +            +   +     +    + ++A +   +    +V+N   + S      
Sbjct: 184 EAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHL 243

Query: 187 LEL-----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 241
           ++        D  + S  K           ++A   E   +++  +     S     D  
Sbjct: 244 IQQGARVGRIDAFVQSLDKNFMVPVGGA--IIAGFNEPFIQDISKMYPGRASASPSLDVL 301

Query: 242 ICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP 286
           I L   G       ++++++    ++  L              P +P
Sbjct: 302 ITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNP 348

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 57.2 bits (137), Expect = 6e-10
 Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 15/174 (8%)

Query: 125 NTCDLDEVASAIGPWTKL-----VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM 179
               ++++ +AI    +L     V       P +   DI +IA++   +    +++ +  
Sbjct: 192 VYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYA 251

Query: 180 SPV------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS 233
                    L +  +   D V+ S+ K +     +  G++        KE+        S
Sbjct: 252 IQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP--IGGGLVYSTDAEFIKEISLSYPGRAS 309

Query: 234 GLAPFDCWI--CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH 285
                +  +     G K     V+ Q+++ + + E L    +     +  +   
Sbjct: 310 ATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESP 363

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 55.6 bits (133), Expect = 2e-09
 Identities = 33/225 (14%), Positives = 66/225 (29%), Gaps = 42/225 (18%)

Query: 37  KQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEI 96
           KQ +    G   Y  +G+     LE  + +L      +    G  A   ++ L     + 
Sbjct: 59  KQWAGMMIGDEAY--AGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQY 116

Query: 97  VAGDDLYGGTD-----------RLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTK 141
           VAG+  +  T             ++        + +      DL+++A+ I         
Sbjct: 117 VAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIA 176

Query: 142 LVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS----------------- 180
            + +    N          ++R + EMA  +G  +  D +                    
Sbjct: 177 YICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVS 236

Query: 181 -PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 224
              +   +   AD    S  K    +   + G L +  E +    
Sbjct: 237 IKDIVHEMFSYADGCTMSGKKDCLVN---IGGFLCMNDEEMFSAA 278

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 23/165 (13%)

Query: 75  CFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV---KRVNTCDLD 130
               G  AL  +   +L  G+E++     +     ++         V    +     D +
Sbjct: 96  VTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPE 155

Query: 131 EVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--- 184
            V  AI P TK + V SP NP   +     +  +A +A  H   L+ D      +     
Sbjct: 156 RVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH 215

Query: 185 -RPLELGAD--IVMHSATK----------FIAGHSDVMAGVLAVK 216
             P  +  +  + ++ A K          +  G  +V+  + +V 
Sbjct: 216 FSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVS 260

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 49.1 bits (116), Expect = 3e-07
 Identities = 19/167 (11%), Positives = 45/167 (26%), Gaps = 31/167 (18%)

Query: 38  QPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEI 96
             +A   G   +  SG+ +  AL   +  +      +    G  A    +  L+   E+ 
Sbjct: 59  MQAAMMRGDEAF--SGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQE 116

Query: 97  VAGDDLYGGT-----------------------DRLLSRVTPKTGVVVKRVNTCDLDEVA 133
              D                                 +  T          +   L+   
Sbjct: 117 KGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176

Query: 134 SAIGPWTKLVWVESPTNPR-----QQICDIRKIAEMAHAHGALLLVD 175
             +GP      V + T+         + +++ +  +A  +   +++D
Sbjct: 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score = 48.9 bits (115), Expect = 3e-07
 Identities = 31/243 (12%), Positives = 61/243 (25%), Gaps = 39/243 (16%)

Query: 21  DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM 80
            P G      +    F+      +              A E   A++  AD+      G 
Sbjct: 32  HPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKTYFVLGGS 91

Query: 81  AA--LAAVTHLLGTGEEIVAGDDLYGGTD---RLLSRVTPKTGVV-------VKRVNTCD 128
           +       + L+  G+ ++   + +         ++   P            +  +   D
Sbjct: 92  SNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSD 151

Query: 129 LDE-----------VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD-- 175
            DE              A       + V         I +  ++ +        +  D  
Sbjct: 152 FDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSA 211

Query: 176 ------------NSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223
                       NS    +     E    IV+ S  K  AG S      +  K   +  +
Sbjct: 212 WVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQ 269

Query: 224 LYF 226
           L +
Sbjct: 270 LRY 272

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 32/207 (15%), Positives = 60/207 (28%), Gaps = 10/207 (4%)

Query: 44  NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLY 103
                      P  D + + L K    D A        A  AV H L   +  V  D+  
Sbjct: 36  TTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENC 95

Query: 104 GGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW---------TKLVWVESPTNPRQQ 154
             +  + +        +V + +  D                      L  +  P      
Sbjct: 96  HYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGN 155

Query: 155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA 214
           + D++KIA++   +   LLV+ +     +   L+      +  +       S    GV+ 
Sbjct: 156 LPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAAS-GPIGVMG 214

Query: 215 VKGERLAKELYFLQNAEGSGLAPFDCW 241
           +K E     L   +  +   +    C 
Sbjct: 215 MKEEWAEIVLRRSEKYKNKEVELLGCT 241

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 31/187 (16%)

Query: 41  ATENGPYDYTRS-GNPT-RDALESLLAKL------DKADRALCFTSGMAALAAVTHLLGT 92
           A + G   Y  + G    R+A+   L K        K +  +   +  A L  ++  L  
Sbjct: 50  ALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKD 109

Query: 93  GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWV 145
           GEE++     +      +       G     V T        ++DE+   +   T+ + +
Sbjct: 110 GEEVLIPTPAFVSYAPAVIL----AGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALII 165

Query: 146 ESPTNPRQQIC---DIRKIAEMAHAHGALLLVD---------NSIMSPVLSRPLELGADI 193
            SP NP   +    D+ +IA+    H  +++ D         ++    + S        I
Sbjct: 166 NSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTI 225

Query: 194 VMHSATK 200
            ++  +K
Sbjct: 226 TVNGFSK 232

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 45.1 bits (106), Expect = 6e-06
 Identities = 45/266 (16%), Positives = 77/266 (28%), Gaps = 32/266 (12%)

Query: 46  PYDYTRSGNPTRDALESLLAKL-------DKADRALCFTSG-----MAALAAVT-----H 88
            Y +    N     LE  + +L          DR + F  G        + +++      
Sbjct: 91  SYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTAT 150

Query: 89  LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESP 148
                 ++VA    Y    R  ++   K G V       +     +   P   +  V SP
Sbjct: 151 PDAPESKVVAHAPFYPVF-REQTKYFDKKGYVWAG----NAANYVNVSNPEQYIEMVTSP 205

Query: 149 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA-DIVMHSATKFIAGHSD 207
            NP   +         A   G   + D     P  +        DI++ + +K   GHS 
Sbjct: 206 NNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSK-FTGHSG 257

Query: 208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 267
              G   +K E +   L         G         L+ +K +   V+ Q+   + +  F
Sbjct: 258 SRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTF 317

Query: 268 LASHPR-VKKVNYAGLPEHPGHELHY 292
                R       A L +        
Sbjct: 318 GFKKLRERWVNITALLDQSDRFSYQE 343

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 7/128 (5%)

Query: 52  SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGT--GEEIVAGDDLYGGTDRL 109
           +  P    LE+   +L     A+  +S  A +      LG   G+E++     +  T  +
Sbjct: 28  TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNM 87

Query: 110 LSRVTPKTGVVVKRVNTC--DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 167
           +  +     +V    +T     + + +AI P TK +    P +      D+  I  +   
Sbjct: 88  IVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAII---PVHYAGAPADLDAIYALGER 144

Query: 168 HGALLLVD 175
           +G  ++ D
Sbjct: 145 YGIPVIED 152

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 30/268 (11%), Positives = 78/268 (29%), Gaps = 41/268 (15%)

Query: 38  QPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEI 96
           Q +A   G   Y   G+     L+    +L   D  +    G  A       LL   ++ 
Sbjct: 60  QWAAMITGDEAYA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKE 117

Query: 97  VAGDDLYGGTDR------------------LLSRVTPKTGVVVKRVNTCDLDEVASAIGP 138
               +    ++                   +++     +          D+ ++   I  
Sbjct: 118 GKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQ 177

Query: 139 W----TKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDN------------SI 178
                   +      N          +++++ E+A  HG  +++D+              
Sbjct: 178 HGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARD 237

Query: 179 MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF 238
                +   E+  D+  ++    ++   D +  +  +   R  +E++ L       +  F
Sbjct: 238 PKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGF 297

Query: 239 DCWICLRGVKTMALRVEKQQDNAQKIAE 266
             +  L G    A+    ++   ++   
Sbjct: 298 VTYGGLAGRDMAAMVQGLEEGTEEEYLH 325

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 6/132 (4%)

Query: 80  MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-----TCDLDEVAS 134
           + A +     +  G+ I+     +         +  + G  ++ +      T  L+ + +
Sbjct: 99  LVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPT 158

Query: 135 AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADI 193
                T+L+ +   +N       + ++  +AH HGA +LVD +            L  D 
Sbjct: 159 LFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDF 218

Query: 194 VMHSATKFIAGH 205
            + S  K     
Sbjct: 219 YVFSGHKLYGPT 230

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 20/165 (12%)

Query: 35  TFKQPS-----ATENGPYDYTRSGN-PTRDALESLLAKLDKADRALCFTSGMAA-LAAVT 87
           T  +P+     A           G  PT + LE L A+    + AL   SG      ++ 
Sbjct: 8   TVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIM 67

Query: 88  HLLGTGEEIVAGDDLYGGTD---RLLSRVTPKTGVVVKRVNTCDLDEVASAI------GP 138
                G+E++   D +        +          V  +    D D+V  AI       P
Sbjct: 68  AHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFP 127

Query: 139 WTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM 179
            T L+ +E+  N          +I++I  +A  HG  + +D + +
Sbjct: 128 RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 172

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 44/268 (16%), Positives = 91/268 (33%), Gaps = 41/268 (15%)

Query: 41  ATENGPYDYTRS-GNPT-RDALESLLAK---LDKADRALCFTSG--MAALAAVTHLLGTG 93
           A E G   Y  + G P  R+A+   L +   L      +  T+G   +    +  ++  G
Sbjct: 55  ALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPG 114

Query: 94  EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---DLDEVASAIGPWTKLVWVESPTN 150
           +E++     +     ++        ++   V T      +++  AI P TKL+   +P+N
Sbjct: 115 DEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSN 174

Query: 151 P---RQQICDIRKIAEMAHAHGALLLVDN----------SIMSPVLSRPLELGADIVMHS 197
           P        ++R IA++A   G  +L D             +S   + P      +V   
Sbjct: 175 PTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSG 234

Query: 198 ATK----------FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
             K          F+AG   ++     ++G   +    F Q                   
Sbjct: 235 FAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYG--------AIAAYENSQ 286

Query: 248 KTMALRVEKQQDNAQKIAEFLASHPRVK 275
             +   +    +  + + + L + P ++
Sbjct: 287 DCVQEMLAAFAERRRYMLDALNAMPGLE 314

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 26/115 (22%), Positives = 48/115 (41%)

Query: 64  LAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           LA+     RAL F SG AA  AV   +   E+ +A D L   +    + ++P        
Sbjct: 92  LAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH 151

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI 178
            +   L  + ++  P  ++V  E   +       + +I ++   H   L+VD++ 
Sbjct: 152 NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAH 206

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 127 CDLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVD 175
            DL  +  A+ P T+ + + +P NP   +    ++  IA +A AH   L+ D
Sbjct: 140 LDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISD 191

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	100.0
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	100.0
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	100.0
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	100.0
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	100.0
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	100.0
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	100.0
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	100.0
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.96
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.95
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.94
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.93
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.93
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.93
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.93
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.93
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.93
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.93
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.92
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.92
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.92
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.91
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.91
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.91
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.91
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.9
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.9
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.9
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.89
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.89
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.89
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.88
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.88
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.88
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.87
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.87
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.86
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.86
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.85
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.85
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.84
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.84
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.83
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.83
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.81
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.81
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.8
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.79
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.79
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.77
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.76
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.76
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.75
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.75
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.72
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.7
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.68
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.67
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.67
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.67
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.66
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.66
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.66
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.64
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.61
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.61
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.6
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.58
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.58
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.56
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.56
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.55
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.54
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.53
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.5
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.47
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.44
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.37
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.31
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.12
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.07
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	98.85
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	98.71
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.43
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	86.13
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	85.14
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	83.9
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	81.95
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	81.51
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	80.79

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-46  Score=326.86  Aligned_cols=291  Identities=83%  Similarity=1.282  Sum_probs=278.1

Q ss_pred             cceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHhc
Q 022194           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL   89 (301)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~~   89 (301)
                      +|..++.+...|+.|...+|++.+.+|..+...+...|.|+|.|+|..+.|++.++++.+.+.+++++||++|+.+++.+
T Consensus         4 ~t~~~h~~~~~dp~ga~~~PI~~sstf~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAisall~l   83 (380)
T d1ibja_           4 STLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTHL   83 (380)
T ss_dssp             HHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTT
T ss_pred             hHhhhcCCCCCCCCCCccCCccCCcceecCCCCccCCceeeCCCChHHHHHHHHHHHHcCCceEEehhhHHHHHHHHHHh
Confidence            45667777778889999999999999998888788889999999999999999999999999999999999999988999


Q ss_pred             cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcC
Q 022194           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG  169 (301)
Q Consensus        90 ~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~  169 (301)
                      +++||+|++.++.|.++...++......|+++..++..+.+.+++++++++++|++++|.||+..+.|+++|+++||++|
T Consensus        84 l~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g  163 (380)
T d1ibja_          84 IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQG  163 (380)
T ss_dssp             SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTT
T ss_pred             hCCCCEEEEEecccccccchhhhhhccccccccccCcchHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcC
Confidence            99999999999999999999989999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccccc
Q 022194          170 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (301)
Q Consensus       170 ~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (301)
                      +++|+|++++.+....|++.|+|+++.|++|+++|...+++|.++.+++.+.+.++......|..+++..++.++++++.
T Consensus       164 ~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T  243 (380)
T d1ibja_         164 ALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT  243 (380)
T ss_dssp             CEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT
T ss_pred             CeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchh
Confidence            99999999999999999999999999999999999999999999999888888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          250 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       250 ~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +..|.+++.+|+..+.++|+++|.|..|+|||++++|+|++++++.+++||
T Consensus       244 l~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~  294 (380)
T d1ibja_         244 MALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS  294 (380)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCS
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccc
Confidence            999999999999999999999999999999999999999999999988876

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-45  Score=319.35  Aligned_cols=293  Identities=37%  Similarity=0.574  Sum_probs=274.9

Q ss_pred             CccceeeecCCCCC-CCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHH-H
Q 022194            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (301)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~   85 (301)
                      +++|..++-+...| ..|...+|++.+.+|..+...+...|.|+|.|+|..+.|++.++++.|.+.+++++||++|+. +
T Consensus         2 k~~T~~vh~G~~~~~~~gav~pPI~~sst~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~   81 (384)
T d1cs1a_           2 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLV   81 (384)
T ss_dssp             CHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred             ChhhheeeCCCCCCCCCCCccCCccCCCCeecCCCCcccCCcccCCCCHHHHHHHHHHHHHhCCCceEEecChHHHHHHH
Confidence            45677777774433 589999999999999887777777889999999999999999999999999999999999995 7


Q ss_pred             HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 022194           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (301)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~  165 (301)
                      ++.++++||+|++++..|.+....+...+...|+.+..++..|.+.++.++++++++|++++|.||+..+.|+++|+++|
T Consensus        82 l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia  161 (384)
T d1cs1a_          82 TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLA  161 (384)
T ss_dssp             HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHH
T ss_pred             HhhcccccceecccccccchhhhhhhhhhcccccccccccCCCHHHHHhhccccccEEEEeccccccceeccHHHHhhhh
Confidence            78899999999999999999998888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHc
Q 022194          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (301)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (301)
                      |++|+++|+|+++..+....|++.|+|+++.|.+|+++|...+++|+++.+++.+.+.+.......|..+++..++.+++
T Consensus       162 ~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~r  241 (384)
T d1cs1a_         162 REVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR  241 (384)
T ss_dssp             HHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHH
T ss_pred             hhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhh
Confidence            99999999999999999999999999999999999999999999999999888888888888888999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++.+..|.+++.+|+..+.++|+++|.|..|.||+++++|+|++++++++++||
T Consensus       242 gL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg  296 (384)
T d1cs1a_         242 GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGA  296 (384)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS
T ss_pred             ccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcc
Confidence            9999999999999999999999999999999999999999999999999988776

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=4.9e-46  Score=323.17  Aligned_cols=295  Identities=38%  Similarity=0.638  Sum_probs=247.2

Q ss_pred             CCCccceeeecCCCCC-CCCccccCeeecceeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEe
Q 022194            6 EPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (301)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~   76 (301)
                      +|+++|..++-+...+ ..|...+|++.+.+|..+...        ....+.|+|.|+|.++.|++.++++.+.+.++++
T Consensus         1 ~~g~~T~~vH~G~~~~~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~~~   80 (392)
T d1gc0a_           1 LPGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL   80 (392)
T ss_dssp             CCCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcCcchhceeCCCCCCCCCCCeeCCccCCCCEeeCCHHHHHHhhcCCcCCceecCCCChHHHHHHHHHHHHhCCcceeeh
Confidence            4788888898773333 589999999999998875532        2345779999999999999999999999999999


Q ss_pred             cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccc
Q 022194           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        77 ~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~  155 (301)
                      +||++|+. ++++++++||+|++++..|++....++..+++.|+++.+++..|.+.+++++++++++|++++|.||+..+
T Consensus        81 ~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v  160 (392)
T d1gc0a_          81 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHM  160 (392)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             hhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCccCHHHHHHhCCCCCeEEEecccccceeee
Confidence            99999995 77889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHH-HHHHhhhhcCCC
Q 022194          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSG  234 (301)
Q Consensus       156 ~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~-~~~~~~~~~~~~  234 (301)
                      .|+++|+++||++|+++++|++++.+..+.|++.|+|+++.|.+|+++|...+.+|.++++++.+.+ ++...+...|..
T Consensus       161 ~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~  240 (392)
T d1gc0a_         161 ADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAV  240 (392)
T ss_dssp             CCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCC
T ss_pred             cchHHHHHHHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCc
Confidence            9999999999999999999999999999999999999999999999999999999999998765544 344566778999


Q ss_pred             CCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +++..++.++++++.+..|.+++.+|+..+.++|+++|.|+.|++|+++++|+|.+++++.+++||
T Consensus       241 ~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg  306 (392)
T d1gc0a_         241 LSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGG  306 (392)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTT
T ss_pred             CChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999998887

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=100.00  E-value=1.9e-45  Score=319.61  Aligned_cols=296  Identities=42%  Similarity=0.705  Sum_probs=271.3

Q ss_pred             CCCCccceeeecCCCC-CCCCccccCeeecceeecCCC--------CCCCCccccCCCCchHHHHHHHHHhhcCCCceEE
Q 022194            5 EEPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (301)
Q Consensus         5 ~~~~~~~~~~~~~~~~-~~~g~~~~p~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~   75 (301)
                      ++-+++|..++-+... ++.|...+|++.+.+|..+..        .....|.|+|.|+|.++.|++.++++.|.+.+++
T Consensus         4 k~~~f~T~~ih~G~~~~~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~a~~   83 (397)
T d1y4ia1           4 RTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLA   83 (397)
T ss_dssp             GGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCccceeEeCCCCCCCCCCCccCCccCCCCeeeCCHHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhCCcccee
Confidence            3456778888877433 357999999999999876543        2345688999999999999999999999999999


Q ss_pred             ecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccc
Q 022194           76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (301)
Q Consensus        76 ~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~  154 (301)
                      ++||++|+. +++.++++||+|++++..|++..+.+...+.+.|+++..++..|.+.+++++++++++|++++|.||+..
T Consensus        84 ~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~Tklv~~Esp~NP~l~  163 (397)
T d1y4ia1          84 TASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLS  163 (397)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred             ehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCCCHHHHHHhcCCCCcEEEecCCccccee
Confidence            999999995 7789999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHH-HHHHhhhhcCC
Q 022194          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGS  233 (301)
Q Consensus       155 ~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~-~~~~~~~~~~~  233 (301)
                      +.|+++|+++||++|+++++|++++.+..+.|++.|+|+++.|++|+++|...+++|+++++++.+.+ ++...+...|.
T Consensus       164 v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~  243 (397)
T d1y4ia1         164 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG  243 (397)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred             ecccHHHHHHhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999998766544 23455667899


Q ss_pred             CCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          234 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      .++|..++.++++++.+..|.+++.+|+..+.++|+++|.|+.|+||+++++|+|.++++++++.||
T Consensus       244 ~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg  310 (397)
T d1y4ia1         244 CMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGG  310 (397)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCS
T ss_pred             cCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCe
Confidence            9999999999999999999999999999999999999999999999999999999999999999887

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.4e-43  Score=303.25  Aligned_cols=293  Identities=42%  Similarity=0.675  Sum_probs=270.6

Q ss_pred             CCCCCccceeeecCCCCCCCCccccCeeecceeecCCCC-CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHH
Q 022194            4 EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT-ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (301)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~-~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~a   82 (301)
                      .++.+++|..++-+...|..|...+|++.+.+|..+... ....|.|+|.|+|.++.|++.++++.|.+.+++++||++|
T Consensus         3 ~~~~~f~T~~vHag~~~d~~gav~pPI~~ssTf~~~~~~~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGmaA   82 (393)
T d1n8pa_           3 QESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGSAT   82 (393)
T ss_dssp             CSSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHH
T ss_pred             CCCCCcchheEECCCCCCCCCCccCCcCCCCceecCCcccccCCeeeeCCCChHHHHHHHHHHHHhCCceEEEecCchhH
Confidence            355778899999875567789999999999999876643 3456889999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHH
Q 022194           83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (301)
Q Consensus        83 i~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~  162 (301)
                      +.+++.++++||+|++.+..|++....+...+...|+++..++. +.+++++++++++++|++++|.||+..+.|+++|+
T Consensus        83 i~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~-~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia  161 (393)
T d1n8pa_          83 TATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND-LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVA  161 (393)
T ss_dssp             HHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS-HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHH
T ss_pred             HHhhhhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEeec-chHHHHHHhhhhcceeEecCcchhhhhccchhhhh
Confidence            98888899999999999999999999999999999999988884 56889999999999999999999999999999999


Q ss_pred             HHHH----HcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHH
Q 022194          163 EMAH----AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (301)
Q Consensus       163 ~l~~----~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (301)
                      ++||    ++|+++++|++++.+....|++.|+|+++.|++|+++|...+++|+++.+++.+.++++......|..++|.
T Consensus       162 ~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~  241 (393)
T d1n8pa_         162 DLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPF  241 (393)
T ss_dssp             HHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHH
T ss_pred             hhhhhhcccCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChH
Confidence            9999    678999999999999999999999999999999999999999999999888888888888899999999999


Q ss_pred             hHHHHHcccccHHHHHHHHHHHHHHHHHHHHhC-CCcceEecCCCCCCcchHHHHhhhcc
Q 022194          239 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQVLS  297 (301)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~v~~v~~p~~~~~~~~~~~~~~~~~  297 (301)
                      .++.++++++.+..|.+++.+|+..+.++|+.+ +.|..|++|+++++|+|.+++++++.
T Consensus       242 ~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~  301 (393)
T d1n8pa_         242 DAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRD  301 (393)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGG
T ss_pred             HHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhcccc
Confidence            999999999999999999999999999999876 78999999999999999999998764

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=100.00  E-value=9.2e-43  Score=303.74  Aligned_cols=293  Identities=36%  Similarity=0.644  Sum_probs=265.5

Q ss_pred             CccceeeecCCCCCCCCccccCeeecceeecCCC--------CCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecch
Q 022194            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (301)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG   79 (301)
                      .+.|..++-+...|..|...+|++.+++|..+..        -+...|.|+|.++|+++.|++.++++.|.+.+++++||
T Consensus         4 ~~~T~~vh~g~~~d~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~sSG   83 (394)
T d1e5ea_           4 TPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSG   83 (394)
T ss_dssp             CHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred             CHHHHheeCCCCCCCCCCeeCCccCCCCeeeCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCcceeeeccc
Confidence            3456777777677889999999999999887653        23456889999999999999999999999999999999


Q ss_pred             HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccH
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l  158 (301)
                      ++|+. ++++++++||+|++++..|++....+...+...|+.+..++..|.+.+++++++++++|+++.|.||+..+.|+
T Consensus        84 maAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di  163 (394)
T d1e5ea_          84 MGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDM  163 (394)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             hHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCCCHHHHHHhhcccccEEEEeccCCcceeeehh
Confidence            99996 78899999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-cCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHH-HHHhhhhcCCCCC
Q 022194          159 RKIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGLA  236 (301)
Q Consensus       159 ~~l~~l~~~-~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~  236 (301)
                      +++++.+++ +|+++++|++++.+...+|++.|+|+++.|.+|+++|...+++|.++.+++..... ....+...|..++
T Consensus       164 ~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~ls  243 (394)
T d1e5ea_         164 ERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVIS  243 (394)
T ss_dssp             HHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCC
T ss_pred             hhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCC
Confidence            999887764 68999999999999999999999999999999999999999999999876544332 2233456789999


Q ss_pred             HHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +..++.++++++.+..|.+++.+|+..+.++|+++|.|+.|.||+++++|+|.+++++++++||
T Consensus       244 p~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~  307 (394)
T d1e5ea_         244 PHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGS  307 (394)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCS
T ss_pred             hHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCC
Confidence            9999999999999999999999999999999999999999999999999999999999988876

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=7.1e-42  Score=297.48  Aligned_cols=291  Identities=32%  Similarity=0.567  Sum_probs=262.2

Q ss_pred             ccceeeecCCCC--C-CCCccccCeeecceeecCCC--------CCCCCccccCCCCchHHHHHHHHHhhcCCCceEEec
Q 022194            9 VSTLLMNFSNEF--D-PYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (301)
Q Consensus         9 ~~~~~~~~~~~~--~-~~g~~~~p~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~   77 (301)
                      ..|..++-+...  + ..|...+|++.+.+|..+..        .+...|.|+|.|+|..+.|++.++++.|.+.+++++
T Consensus        10 ~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LEgg~~a~~~s   89 (398)
T d1qgna_          10 DGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMA   89 (398)
T ss_dssp             HHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CccEEEeCCCcCCCCCCCCCccCCeeCCCcEEeCCHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHhCCceEEEec
Confidence            346777766332  2 36899999999999877543        234678899999999999999999999999999999


Q ss_pred             chHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHH-hhcCCCceEEEEeCCCCCcccc
Q 022194           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA-SAIGPWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        78 sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~-~~l~~~~~~v~i~~~~np~G~~  155 (301)
                      ||++|+. ++++++++||+|++++..|++....+....+..|+++..++..+.+..+ ....+++++|++++|.||+..+
T Consensus        90 SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v  169 (398)
T d1qgna_          90 SGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRC  169 (398)
T ss_dssp             CHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCC
T ss_pred             CcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccccchhhhhhhhccccceEEEccCcccccccc
Confidence            9999995 7788999999999999999999999999999999999999977766555 4556899999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCC
Q 022194          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  235 (301)
Q Consensus       156 ~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
                      .|+++|+++||++|+++++|++++.+....|++.|+|+++.|++|+++|...+++|.+..+ +.+...++......|..+
T Consensus       170 ~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~-~~~~~~~~~~~~~~G~~l  248 (398)
T d1qgna_         170 VDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGP-LKLVSEIRNLHHILGGAL  248 (398)
T ss_dssp             CCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEEC-HHHHHHHHHHHHHHCCCC
T ss_pred             chHHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcch-hhhhhhhhhhcccCCCcC
Confidence            9999999999999999999999999999999999999999999999999999988988765 556677777888899999


Q ss_pred             CHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ++..++.++++++.+..|.+++.+|+..+.++|+++|.|..|+||+++++|+|++++++++++||
T Consensus       249 ~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~  313 (398)
T d1qgna_         249 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGG  313 (398)
T ss_dssp             CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCS
T ss_pred             CHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999988776

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-42  Score=301.20  Aligned_cols=291  Identities=25%  Similarity=0.445  Sum_probs=264.7

Q ss_pred             ccceeeecCCCCC-CCCccccCeeecceeecCCCC---------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEecc
Q 022194            9 VSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT---------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (301)
Q Consensus         9 ~~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~---------~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~s   78 (301)
                      ++|..++.+...+ ..|...+|++.+.+|..+...         ....|.|+|.++|..+.+++.++++.|.+.+++++|
T Consensus         2 ~~T~~vh~g~~~~~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~~~S   81 (391)
T d1cl1a_           2 LDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPC   81 (391)
T ss_dssp             HHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred             cccceecCCCCCCCCCCCccCCeeCCCceeeCCHHHHHHHhcCCccCceEeECCCChhHHHHHHHHHHHhCCccEEEecc
Confidence            3566677663333 479999999999998765421         234578999999999999999999999999999999


Q ss_pred             hHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        79 G~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                      |++|+. +++.++++||+|++++..|.++...++..+...|+++..++..|.+.+++++++++++|++++|.||+..+.|
T Consensus        82 GMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~D  161 (391)
T d1cl1a_          82 GAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHD  161 (391)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCCC
T ss_pred             ccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCccccccccccccccceeeecccCcccccccc
Confidence            999995 7788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHc--CCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCC
Q 022194          158 IRKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  235 (301)
Q Consensus       158 l~~l~~l~~~~--~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
                      +++|+++|+++  |+++++|++++.+...+|++.|+|+++.|.+|+++|...+++|.++.+++ +...+.......+..+
T Consensus       162 i~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~-~~~~~~~~~~~~G~~~  240 (391)
T d1cl1a_         162 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYLMGQMV  240 (391)
T ss_dssp             HHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHHHHTTCCC
T ss_pred             cHHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceecccc-ccccchhhhhcccccC
Confidence            99999999774  99999999999999999999999999999999999999999999987754 5566667777889999


Q ss_pred             CHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhhccCCC
Q 022194          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQVLSDNG  300 (301)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ++..++.++++++.+..|.+++.+|+..+.++|+++|.|..|++|+++++|+|++++++.++.||
T Consensus       241 ~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg  305 (391)
T d1cl1a_         241 DADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSG  305 (391)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCS
T ss_pred             CchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999988876

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5e-42  Score=300.13  Aligned_cols=292  Identities=34%  Similarity=0.495  Sum_probs=256.6

Q ss_pred             ccceeeecCCCCC-CCCccccCeeecceeecCCC--------CCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecch
Q 022194            9 VSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (301)
Q Consensus         9 ~~~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG   79 (301)
                      .+|..++-+...+ ..|...+|++.+.+|..+..        .....|.|+|.|+|+++.|++.|+++.+.+.+++++||
T Consensus         3 ~~T~~vh~g~~~~~~~gsv~pPI~~sstf~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~~~~a~~~~SG   82 (421)
T d2ctza1           3 FETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASG   82 (421)
T ss_dssp             HHHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred             hhHhheeCCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCCeEEEecCh
Confidence            3566677664444 47899999999999876532        13455789999999999999999999999999999999


Q ss_pred             HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCC-HHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD-LDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        80 ~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d-~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                      ++|+. +++.++++||+|++++..|+++...+...+...|+++.+++..+ .+..++.+++++++|++++|.||+..+.|
T Consensus        83 maAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~~~~~~~t~li~~EtpsNP~l~v~D  162 (421)
T d2ctza1          83 HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPD  162 (421)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccccCcchhccccCCCceEEEEcCCCcceeEecc
Confidence            99985 78899999999999999999999999999999999999998764 56667778899999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCcC-CccccCccCCCCcEEEecccccccCCCCceeeEEEEcchhH----------------
Q 022194          158 IRKIAEMAHAHGALLLVDNSIM-SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL----------------  220 (301)
Q Consensus       158 l~~l~~l~~~~~~~li~D~~~~-~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~----------------  220 (301)
                      +++|+++||++|+++++|++++ .+..+.|++.|+|+++.|.+|+++|...+++|+++.+++..                
T Consensus       163 i~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~  242 (421)
T d2ctza1         163 LEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY  242 (421)
T ss_dssp             HHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGG
T ss_pred             hHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhh
Confidence            9999999999999999999998 67889999999999999999999999999999999765321                


Q ss_pred             ---------------HHHHHHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCC
Q 022194          221 ---------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  285 (301)
Q Consensus       221 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~  285 (301)
                                     .+.........|..++|..+|.++++++.+..|.+++.+|+..+.++|+++|.|+.|+||+++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~  322 (421)
T d2ctza1         243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHH  322 (421)
T ss_dssp             TTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTC
T ss_pred             hhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCC
Confidence                           11111223346899999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHhhhccCCC
Q 022194          286 PGHELHYSQVLSDNG  300 (301)
Q Consensus       286 ~~~~~~~~~~~~~~~  300 (301)
                      |+|.++++++++++|
T Consensus       323 p~~~~a~~~~~g~~G  337 (421)
T d2ctza1         323 PHHDRAQKYFKGKPG  337 (421)
T ss_dssp             TTHHHHHHHHTTCCC
T ss_pred             ccHHHHHHhcCCCCc
Confidence            999999999987655

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=100.00  E-value=7.3e-38  Score=267.40  Aligned_cols=242  Identities=39%  Similarity=0.667  Sum_probs=224.7

Q ss_pred             HHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC
Q 022194           59 ALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG  137 (301)
Q Consensus        59 ~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~  137 (301)
                      +|+++++++.|.+.+++++||++|+. +++.++++||+|++++..|++....++..++..|+++.+++..|.+.++++++
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~~~i~   81 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHhhhcc
Confidence            68999999999999999999999985 78899999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeCCCCCccccccHHHHHHHH-HHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCCCceeeEEEEc
Q 022194          138 PWTKLVWVESPTNPRQQICDIRKIAEMA-HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (301)
Q Consensus       138 ~~~~~v~i~~~~np~G~~~~l~~l~~l~-~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~  216 (301)
                      +++++|++++|.||+..+.|++++++++ +++|+++|+|++++.+...+|++.|+|+++.|++|+++|....++|+++.+
T Consensus        82 ~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~  161 (331)
T d1pffa_          82 PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSR  161 (331)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEEC
T ss_pred             cccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCcccccccccc
Confidence            9999999999999999999999999985 678999999999999999999999999999999999999999999999998


Q ss_pred             chhHHHHH-HHhhhhcCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCCCCcchHHHHhhh
Q 022194          217 GERLAKEL-YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQV  295 (301)
Q Consensus       217 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~~~~~~~~~~~~~  295 (301)
                      ++...+.. .......|..+++..++.++++++.+..|.+++.+|+..+.++|+++|.|+.|+||+++++|+|.+++++.
T Consensus       162 ~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~  241 (331)
T d1pffa_         162 ADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM  241 (331)
T ss_dssp             HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHC
T ss_pred             ccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcc
Confidence            66554422 22345678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCC
Q 022194          296 LSDNG  300 (301)
Q Consensus       296 ~~~~~  300 (301)
                      .++||
T Consensus       242 ~~~g~  246 (331)
T d1pffa_         242 KMFGS  246 (331)
T ss_dssp             SSCCS
T ss_pred             cccCc
Confidence            88876

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.96  E-value=3.2e-27  Score=207.75  Aligned_cols=253  Identities=17%  Similarity=0.225  Sum_probs=179.9

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHH-
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALA-   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~-   84 (301)
                      .+++|+.+++.+.  .+|.+.......   ...+...|++. |.+. |+++.+++.+.+|..   +.+++++| ++++. 
T Consensus        31 ~vi~l~~G~p~~~--~p~~v~~a~~~~---~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~  105 (388)
T d1j32a_          31 DVCSFSAGEPDFN--TPKHIVEAAKAA---LEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFN  105 (388)
T ss_dssp             CCEECCCSSCSSC--CCHHHHHHHHHH---HHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH
T ss_pred             CeEECCCCCCCCC--CCHHHHHHHHHH---HhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHH
Confidence            6799985444333  223222221111   11234457665 7776 888899998887653   55666666 58886 


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                      ++..+++|||+|++++|.|..+.    ..++..|..++.++..       |+++++++++++++++++++|+||||.+.+
T Consensus       106 ~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~  181 (388)
T d1j32a_         106 LMLAMIEPGDEVIIPAPFWVSYP----EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYT  181 (388)
T ss_dssp             HHHHHCCTTCEEEEESSCCTHHH----HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHhCCCCEEEEcCCCcHHHH----HHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccc
Confidence            56678999999999999999987    4445566677777653       789999999999999999999999999975


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCcCCccccCcc----------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHH
Q 022194          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLSRPL----------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (301)
Q Consensus       158 ---l~~l~~l~~~~~~~li~D~~~~~~~~~~~~----------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~  224 (301)
                         +++|+++|+++|+++|+||+|....+....          ..+..+++.|+||.| +.+|+|.||++++++ +.+.+
T Consensus       182 ~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~-~~~GlRvG~~~~~~~-~~~~~  259 (388)
T d1j32a_         182 PDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPVP-LVKAA  259 (388)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCHH-HHHHH
T ss_pred             hhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh-hcchhHeEEEEECHH-HHHHH
Confidence               788999999999999999999755443211          113579999999999 567899999998754 55555


Q ss_pred             HHhhhhcCCCCCHHhHHHHHc----ccccHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          225 YFLQNAEGSGLAPFDCWICLR----GVKTMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      ...........+...+.++..    ..+.+.+.++.+.++.+.+.+.|++++++.
T Consensus       260 ~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~  314 (388)
T d1j32a_         260 TKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLE  314 (388)
T ss_dssp             HHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCB
T ss_pred             HHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            444444444444444433322    233467777888889999999999876653

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=3.6e-26  Score=200.55  Aligned_cols=250  Identities=20%  Similarity=0.261  Sum_probs=173.1

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~   84 (301)
                      .++++|+.++..+.  .+|.+.... .  +....+.++|++. |.+. |+++.+++.+..+.+   +.+++++| ++++.
T Consensus        31 ~~vi~l~~g~p~~~--~p~~i~~a~-~--~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~  105 (382)
T d1b5pa_          31 VDLVALTAGEPDFD--TPEHVKEAA-R--RALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF  105 (382)
T ss_dssp             CCCEECCCSSCSSC--CCHHHHHHH-H--HHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred             CCeEECCCCCCCCC--CCHHHHHHH-H--HHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHH
Confidence            35789884444343  233332221 1  1112245678766 7776 888888888877643   45556666 68885


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCccccc
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~  156 (301)
                       ++..++++||.|++++|.|+.+.    ..++..|.+++.++..       |++++++.++++++++++++||||||.+.
T Consensus       106 ~~~~~l~~~gd~vl~~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~  181 (382)
T d1b5pa_         106 NLFQAILDPGDEVIVLSPYWVSYP----EMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVY  181 (382)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCC
T ss_pred             HHHHHhCCCCCEEEECCCCcHHHH----HHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcchhC
Confidence             66778999999999999999997    5566778888888753       89999999999999999999999999997


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCccccC----c--cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh
Q 022194          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (301)
Q Consensus       157 ~---l~~l~~l~~~~~~~li~D~~~~~~~~~~----~--~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~  227 (301)
                      +   +++|+++|++||+++|+||+|+...+..    +  ...+..+++.|+||.| +.+|+|.||+++++ .+.+.+...
T Consensus       182 s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~GlR~G~~~~~~-~~i~~~~~~  259 (382)
T d1b5pa_         182 PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAF-AMTGWRIGYACGPK-EVIKAMASV  259 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTT-TCGGGCCEEEECCH-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhc-cCcHhheEEEEECH-HHHHHHHHH
Confidence            5   7889999999999999999998554321    1  1224679999999999 56789999999875 455555555


Q ss_pred             hhhcCCCCCHHhHHHHHcccc-------cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          228 QNAEGSGLAPFDCWICLRGVK-------TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ........+..........+.       .+...++.+.++++.+.+.++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  310 (382)
T d1b5pa_         260 SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL  310 (382)
T ss_dssp             HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc
Confidence            554444444444333222221       12334455566666677766653

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=4e-26  Score=200.67  Aligned_cols=250  Identities=14%  Similarity=0.178  Sum_probs=173.3

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCC----CceEEecch-HHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKA----DRALCFTSG-MAAL   83 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~i~~~sG-~~ai   83 (301)
                      ..+|+|+.++..++  .++.+......   .......+|++. |.+. ++++.+++.+..+.    ++.+++++| ++++
T Consensus        25 ~dvi~l~~g~p~~~--~p~~v~~~~~~---a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l   99 (388)
T d1gdea_          25 KDVISLGIGEPDFD--TPQHIKEYAKE---ALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAF   99 (388)
T ss_dssp             TTCEECCCCSCCSC--CCHHHHHHHHH---HHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHH
T ss_pred             CCeEECCCCCCCCC--CCHHHHHHHHH---HHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHH
Confidence            35789985444343  23333222111   112234567766 7766 88888888765543    244555555 5888


Q ss_pred             H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccc
Q 022194           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQI  155 (301)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~  155 (301)
                      . ++..+++|||+|++++|.|..+.    ..++..|.+++.++.+       |++++++.++++++++++++|+||||.+
T Consensus       100 ~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~  175 (388)
T d1gdea_         100 LMGLSAFLKDGEEVLIPTPAFVSYA----PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAV  175 (388)
T ss_dssp             HHHHTTTCCTTCEEEEEESCCTTHH----HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             HHHHHHhcCCCCEEEECCCCcHHHH----HHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCCCc
Confidence            6 66778999999999999999996    5566778888888753       7899999999999999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCCcCCccccCc---------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHH
Q 022194          156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (301)
Q Consensus       156 ~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~  223 (301)
                      .+   +++|+++|++|++++|+||+|+...+...         ...+.++++.||||.| +.+|+|.||++++++ +...
T Consensus       176 ~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~ii~~~~-~~~~  253 (388)
T d1gdea_         176 LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF-AMTGWRLGFVAAPSW-IIER  253 (388)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT-TCGGGCCEEEECCHH-HHHH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhc-cCccccEEEEEeecc-chhh
Confidence            75   78899999999999999999985443211         1224579999999999 667899999998754 4454


Q ss_pred             HHHhhhhcCCCCCHHhHHHHHcccc------cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          224 LYFLQNAEGSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +...........+.....++...++      .+....+.+.++...+.+.+...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  307 (388)
T d1gdea_         254 MVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM  307 (388)
T ss_dssp             HHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhc
Confidence            4555554455555554444433332      23444455666667777777764

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.93  E-value=5.7e-25  Score=193.64  Aligned_cols=225  Identities=19%  Similarity=0.152  Sum_probs=162.2

Q ss_pred             CCccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccC
Q 022194           45 GPYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (301)
Q Consensus        45 ~~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~  117 (301)
                      ....|++. |.+. ++++.+++++.+|.+   +.+++++| ++++. ++..++.+||+|++++|.|+.+.    ..++..
T Consensus        62 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~----~~~~~~  137 (395)
T d1xi9a_          62 GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYT----GLVKFY  137 (395)
T ss_dssp             TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHHT
T ss_pred             CCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccch----hhhhhc
Confidence            34457766 7776 888999999888764   45555555 68885 66778999999999999999886    556677


Q ss_pred             CcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC--
Q 022194          118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--  185 (301)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~--  185 (301)
                      |.+++.++..       |++++++.+.++++++++++||||||.+.+   +++|+++|++|++++|.||+|....+..  
T Consensus       138 g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~  217 (395)
T d1xi9a_         138 GGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH  217 (395)
T ss_dssp             TCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC
T ss_pred             CCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccc
Confidence            7787777632       789999999999999999999999999975   7889999999999999999998654432  


Q ss_pred             -----ccCCCCcEEEecccccccCCCCceeeEEEEcch-hHHHHH---HHhhhhcCCCCCHHhHHH---HH-cccccHHH
Q 022194          186 -----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKEL---YFLQNAEGSGLAPFDCWI---CL-RGVKTMAL  252 (301)
Q Consensus       186 -----~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~---~~-~~l~~~~~  252 (301)
                           .......+++.|+||.+ +.+|+|.||++.... .....+   ...........+...+.+   .+ ...+++.+
T Consensus       218 ~~~~~~~~~~~vi~~~S~SK~~-~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~  296 (395)
T d1xi9a_         218 ISPGSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKE  296 (395)
T ss_dssp             CCHHHHCSSSCEEEEEESTTTT-CCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHH
T ss_pred             cchhhcCCCCCEEEEeCcchhc-ccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHH
Confidence                 11234579999999999 556899999876432 221211   111122222222222222   22 23345677


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCc
Q 022194          253 RVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                      .++.+.++++.+.+.|++++.+
T Consensus       297 ~~~~~~~~~~~l~~~L~~~~~~  318 (395)
T d1xi9a_         297 YMKKLKERRDYIYKRLNEIPGI  318 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCc
Confidence            7788888999999999987654

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.93  E-value=7.4e-25  Score=191.05  Aligned_cols=251  Identities=19%  Similarity=0.130  Sum_probs=184.0

Q ss_pred             cceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC--CCc-hHHHHHHHHHhhcCCCceEEecchHHHHH-H
Q 022194           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNP-TRDALESLLAKLDKADRALCFTSGMAALA-A   85 (301)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~~-~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~   85 (301)
                      ...+++|+ +|||||+..+|.+.......-+. ...+..-++.  |.. ..++||+.+++++|.+.++++++|..|.. +
T Consensus        44 ~~~~~~Fs-SndYLGL~~~p~v~~a~~~al~~-yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~  121 (396)
T d2bwna1          44 KQDITVWC-GNDYLGMGQHPVVLAAMHEALEA-VGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDAT  121 (396)
T ss_dssp             EEEEEECS-CSCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHH
T ss_pred             CeEEEEEE-cccccCcCCCHHHHHHHHHHHHH-hCCCccccccccCCchHHHHHHHHHHHHhCCCceeeeecchHHHHHH
Confidence            46899999 99999999999988765332111 1111223333  554 48999999999999999999999987764 5


Q ss_pred             HHhc--cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC----CCceEEEEeCCCCCccccccHH
Q 022194           86 VTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIR  159 (301)
Q Consensus        86 ~~~~--~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~~~np~G~~~~l~  159 (301)
                      +..+  ..++|.|+.....|-+..    ..++..+.+++.+..+|.+++++.++    ...++|+++...+++|.+.|++
T Consensus       122 i~~l~~~~~~d~i~~D~~~Hasi~----~g~~ls~a~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~  197 (396)
T d2bwna1         122 LSTLRVLFPGLIIYSDSLNHASMI----EGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIK  197 (396)
T ss_dssp             HHHHHHHSTTCEEEEETTCCHHHH----HHHHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHH
T ss_pred             HHHHhcccCCCceeehhhhhhccc----hhhhccccCceEeecchHHHhhhHHhhhcccCceeEEEEeeccCcccccccH
Confidence            5544  467887777776666554    44455677888888888888776664    3556888899999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCccccCc---------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh--
Q 022194          160 KIAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--  228 (301)
Q Consensus       160 ~l~~l~~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~--  228 (301)
                      +|.+++++||+++++||+|+.|+++..         .....|++++||+|+|++    .+|+++++ +.+.+.+....  
T Consensus       198 ~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~----~Gg~v~~~-~~~i~~l~~~~~~  272 (396)
T d2bwna1         198 EICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV----FGGYIAAS-ARMVDAVRSYAPG  272 (396)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS----CCEEEEEC-HHHHHHHHHHCHH
T ss_pred             hHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccc----cccccchh-HHHHHHHHhhcch
Confidence            999999999999999999999887632         123469999999999965    36887776 45556554333  


Q ss_pred             hhcCCCCCHHhHHHHHccccc-----HHHHHHHHHHHHHHHHHHHHhC
Q 022194          229 NAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..+...+++..+.++..+++.     ..++++++..+.+++++.+.+.
T Consensus       273 ~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~  320 (396)
T d2bwna1         273 FIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL  320 (396)
T ss_dssp             HHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            334566677776666555443     2344567778888888888763

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.93  E-value=8.6e-25  Score=193.62  Aligned_cols=225  Identities=16%  Similarity=0.150  Sum_probs=161.8

Q ss_pred             CccccCC-CCch-HHHHHHHHHhhcCC---------CceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhh
Q 022194           46 PYDYTRS-GNPT-RDALESLLAKLDKA---------DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR  112 (301)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~~~---------~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~  112 (301)
                      ..+|.+. |.+. |+++.+++.+.++.         .+.+++++| ++++. ++..++++||+|++++|.|+.+.    .
T Consensus        65 ~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~----~  140 (412)
T d1bw0a_          65 CNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYE----T  140 (412)
T ss_dssp             SSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHH----H
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhh----h
Confidence            4468777 8877 88899999887532         135555555 68885 67778999999999999999886    5


Q ss_pred             hcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcc
Q 022194          113 VTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (301)
Q Consensus       113 ~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~  182 (301)
                      .++..|.+++.++.+       +++++++...++++++++++|+||||.+.+   +++|+++|+++++++|+||+|....
T Consensus       141 ~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~  220 (412)
T d1bw0a_         141 VCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMV  220 (412)
T ss_dssp             HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCB
T ss_pred             hhhccCccccccccccccccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhc
Confidence            667788998888753       788999999999999999999999999974   7889999999999999999997544


Q ss_pred             ccCc------------cCCCCcEEEecccccccCCCCceeeEEEEcchh-----HHHHHHHhhhhcCCCCCHHhHHHHH-
Q 022194          183 LSRP------------LELGADIVMHSATKFIAGHSDVMAGVLAVKGER-----LAKELYFLQNAEGSGLAPFDCWICL-  244 (301)
Q Consensus       183 ~~~~------------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-  244 (301)
                      +...            ......+++.|+||.+ +.+|+|.||++++++.     +...................+.+.. 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (412)
T d1bw0a_         221 FKGKDPNATFTSVADFETTVPRVILGGTAKNL-VVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEA  299 (412)
T ss_dssp             CCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT-SCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             cCCCCCccccccccccccccccccccccCccC-ccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhcccc
Confidence            3211            1112358889999999 5578999999987532     2222222222222222222222211 


Q ss_pred             --cc-cccHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          245 --RG-VKTMALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       245 --~~-l~~~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                        .. .+.+.+.++++.++++.+.+.|.+.+++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~  333 (412)
T d1bw0a_         300 LLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLA  333 (412)
T ss_dssp             HHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred             cccccccccccccchhHHHHHHHHHHHHHhcCce
Confidence              12 22456677788888889999998876653

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=7.1e-25  Score=192.78  Aligned_cols=252  Identities=17%  Similarity=0.163  Sum_probs=188.2

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC--CCch-HHHHHHHHHhhcCCCceEEecchHHHHH-HH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPT-RDALESLLAKLDKADRALCFTSGMAALA-AV   86 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~~~-~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~   86 (301)
                      .+++||+ +|||+|+..+|.+.......-+. .......++.  |.+. .+++++.+++++|.+.+++++||+.|.. ++
T Consensus        45 ~~~l~f~-s~dYLGl~~hp~v~~a~~~a~~~-~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i  122 (401)
T d1fc4a_          45 SHVINFC-ANNYLGLANHPDLIAAAKAGMDS-HGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLF  122 (401)
T ss_dssp             CEEEECC-CSCTTSCTTCHHHHHHHHHHHHH-HCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTH
T ss_pred             CEEEEEE-ccccccccCCHHHHHHHHHHHHH-hCCCcccceeeccCcHHHHHHHHHHHHhhcCCceEEecchhhhhHHHH
Confidence            4689999 99999999999888664332110 0011122222  5544 8899999999999999999999998874 77


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC------CCceEEEEeCCCCCccccccHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQQICDIRK  160 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~------~~~~~v~i~~~~np~G~~~~l~~  160 (301)
                      ..+.+++|.|++....|.++..    .+...+.++..+...|.+++++.++      ....+|++++..++.|.+.|+++
T Consensus       123 ~~l~~~~d~i~~d~~~h~s~~~----G~~~~~a~~~~~~~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~  198 (401)
T d1fc4a_         123 ETLLGAEDAIISDALNHASIID----GVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKG  198 (401)
T ss_dssp             HHHCCTTCEEEEETTCCHHHHH----HHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHH
T ss_pred             HHhcCCCcEEEeCCcchHHHHc----cccccCceEEEEcCCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhH
Confidence            7889999999999889888763    3445566777788778777776653      34568888898888999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCccccCc---------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh--hh
Q 022194          161 IAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QN  229 (301)
Q Consensus       161 l~~l~~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~--~~  229 (301)
                      |.++|++||+++|+||+|+.+.+...         ....+|++++|++|.++|+   .+|++.++ +.+.+.+...  ..
T Consensus       199 l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~---~Gg~v~g~-~~~~~~l~~~~~~~  274 (401)
T d1fc4a_         199 VCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGA---SGGYTAAR-KEVVEWLRQRSRPY  274 (401)
T ss_dssp             HHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSS---SCEEEEEC-HHHHHHHHHHCHHH
T ss_pred             HHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccC---CcccccCC-HHHHHHHHcCChhh
Confidence            99999999999999999998776531         1224789999999999654   35777766 4555554432  33


Q ss_pred             hcCCCCCHHhHHHHHcccccH---HHHHHHHHHHHHHHHHHHHhCC
Q 022194          230 AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      ..+..+++....++...++.+   .++++++.++.+++++.+.+..
T Consensus       275 ~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g  320 (401)
T d1fc4a_         275 LFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAG  320 (401)
T ss_dssp             HHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccC
Confidence            455677777766666655543   5678999999999999998753

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.9e-24  Score=188.99  Aligned_cols=249  Identities=17%  Similarity=0.190  Sum_probs=173.8

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCC----ceEEecchHHHHH-
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKAD----RALCFTSGMAALA-   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~----~~i~~~sG~~ai~-   84 (301)
                      .+|+|+.++..+++  ++.+.... ..  ....+.+.|++. |.+. |+++.+++.+..+.+    +.++++++++++. 
T Consensus        29 ~vI~l~~G~p~~~~--p~~i~~~~-~~--~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~  103 (375)
T d1o4sa_          29 DVINLTAGEPDFPT--PEPVVEEA-VR--FLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFN  103 (375)
T ss_dssp             CCEECCCSSCSSCC--CHHHHHHH-HH--HHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHH
T ss_pred             CeEECCCcCCCCCC--CHHHHHHH-HH--HHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHH
Confidence            48899855444442  23222221 11  112244568776 7776 888888888777643    4555555579986 


Q ss_pred             HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------CHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                      ++..++++||.|++++|.|+.+.    ......+.....++.+       +.+.++....++++++++++|+||||.+.+
T Consensus       104 ~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s  179 (375)
T d1o4sa_         104 AFMALLDPGDEVIVFSPVWVSYI----PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYR  179 (375)
T ss_dssp             HHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHhCCCCEEEEccCccccch----hhhhccccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCccCCCC
Confidence            67778999999999999999987    3444556666666643       678888888899999999999999999974


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCcCCccccC--------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHH
Q 022194          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLSR--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (301)
Q Consensus       158 ---l~~l~~l~~~~~~~li~D~~~~~~~~~~--------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~  226 (301)
                         +++|+++|++|+++||+||+|.......        ....+..+++.|+||.+ +.+|+|.||++++++.. +.+..
T Consensus       180 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~G~R~G~~~~~~~~~-~~~~~  257 (375)
T d1o4sa_         180 REFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISSEKVA-TAVSK  257 (375)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECCHHHH-HHHHH
T ss_pred             HHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhc-cCCccccccccccccch-hhhhh
Confidence               7889999999999999999987554321        23456789999999999 66789999999886544 44444


Q ss_pred             hhhhcCCCCCHHhHHHHHccc-ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          227 LQNAEGSGLAPFDCWICLRGV-KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ..................... +......+.+.++.+.+.+.|++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~  303 (375)
T d1o4sa_         258 IQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKM  303 (375)
T ss_dssp             HHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhccccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHHHhc
Confidence            444444444444433333333 334555567777788888888775

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.93  E-value=1.4e-24  Score=192.65  Aligned_cols=219  Identities=19%  Similarity=0.209  Sum_probs=163.2

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC----ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD----RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~----~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      .+|.+. |.+. |+++.+++++.+|.+    +.+++++| ++|+. ++..++++||.|++++|.|+.+.    ..+...|
T Consensus        60 ~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g  135 (418)
T d2r5ea1          60 NQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYE----PMVKAAG  135 (418)
T ss_dssp             GSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTT
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhh----HHHHHcC
Confidence            357776 7776 888999999887643    45666666 58886 66778999999999999999997    5555677


Q ss_pred             cEEEEecCC---------------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 022194          119 VVVKRVNTC---------------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (301)
Q Consensus       119 ~~~~~~~~~---------------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~  180 (301)
                      ..++.++.+               +.+++.+.....++++++++|+||||.+.+   +++|+++|+++|+++|+||+|..
T Consensus       136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~  215 (418)
T d2r5ea1         136 GIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEH  215 (418)
T ss_dssp             CEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             CeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhh
Confidence            777776642               577888888889999999999999999975   77799999999999999999975


Q ss_pred             ccccC---------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHc------
Q 022194          181 PVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR------  245 (301)
Q Consensus       181 ~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  245 (301)
                      ..+..         +......+++.|+||.+ +.+|+|.||+++++ .+.+.+...........+...+.++..      
T Consensus       216 ~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~~~~~-~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~  293 (418)
T d2r5ea1         216 MVFEPFEHIRICTLPGMWERTITIGSAGKTF-SLTGWKIGWAYGPE-ALLKNLQMVHQNCVYTCATPIQEAIAVGFETEL  293 (418)
T ss_dssp             CBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT-TCGGGCCEEEESCH-HHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHH
T ss_pred             hccCCCccccccccccccceeeeeecCCccc-cCCCcccccccccc-hhhhhhhhcccccccccccchhhhccccccccc
Confidence            54321         11234569999999999 55789999999875 455655555554444444443333221      


Q ss_pred             ----cc-ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          246 ----GV-KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       246 ----~l-~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                          .. +.+.+.++.+..+++.+.+.|++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  324 (418)
T d2r5ea1         294 KRLKSPECYFNSISGELMAKRDYMASFLAEV  324 (418)
T ss_dssp             TTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccchhhHHHHHHHHHHhhhhHHhhHhhc
Confidence                11 235666777888888999999885

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.3e-24  Score=188.42  Aligned_cols=251  Identities=18%  Similarity=0.158  Sum_probs=188.3

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC--CC-chHHHHHHHHHhhcCCCceEEecchHHHH-HHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AAV   86 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~~~~~~i~~~sG~~ai-~~~   86 (301)
                      ..+++|+ +|||||+..+|.+.......-+. .......++.  |. +...++|+.|++++|.+.+++++||+.|. .++
T Consensus        38 ~~~l~f~-s~dYLGl~~~p~v~~a~~~a~~~-~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i  115 (383)
T d1bs0a_          38 RQYLNFS-SNDYLGLSHHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVI  115 (383)
T ss_dssp             EEEEECS-CCCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred             eEEEEEE-cccccccCCCHHHHHHHHHHHHH-hCCCCCccccccCcchHHHHHHHHHHHhcCCCceEEecccchhhHHHH
Confidence            4789999 99999999999888765433211 0011222333  55 44899999999999999999999999776 577


Q ss_pred             HhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC---CCceEEEEeCCCCCccccccHHHHHH
Q 022194           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAE  163 (301)
Q Consensus        87 ~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~l~~l~~  163 (301)
                      ..+.+++|.|++....|.+..    ..++..+.+++.++..|.++++..+.   ++.++|+++.+.+++|.+.|+++|.+
T Consensus       116 ~al~~~~d~v~~d~~~h~si~----~g~~~~~~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~  191 (383)
T d1bs0a_         116 AAMMAKEDRIAADRLSHASLL----EAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQ  191 (383)
T ss_dssp             HHHCCTTCEEEEETTCCHHHH----HHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHH
T ss_pred             HhhcCCCceEEeeccccHHHh----hccccCCCcceEecchHHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHHH
Confidence            889999999999888777765    34456777888999999999888774   45678899999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCccccCcc-------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh--hhcCCC
Q 022194          164 MAHAHGALLLVDNSIMSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSG  234 (301)
Q Consensus       164 l~~~~~~~li~D~~~~~~~~~~~~-------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~--~~~~~~  234 (301)
                      +|++||+++++||+|+.++++...       ....++++.+++|.++++    +|++.++. ...+.++...  ...+..
T Consensus       192 l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~----Gg~v~~~~-~~~~~l~~~~~~~~~s~~  266 (383)
T d1bs0a_         192 VTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS----GAAVLCSS-TVADYLLQFARHLIYSTS  266 (383)
T ss_dssp             HHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC----CEEEEECH-HHHHHHHHHCHHHHSSBC
T ss_pred             HHHhcCcEEEeecceeeeecCCcccchHHHcCCcccccccccccccccc----ccccccch-hHHHHHHhhchhhhhccc
Confidence            999999999999999988775321       224578999999999653    57777765 4555554332  334455


Q ss_pred             CCHHhHHHHHccccc-----HHHHHHHHHHHHHHHHHHHHhCC
Q 022194          235 LAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       235 ~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      +++..+.++..+++.     ...+++++.++..++.+.|++.+
T Consensus       267 ~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g  309 (383)
T d1bs0a_         267 MPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP  309 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             ccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            666665565555443     24566778888889999998764

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=1.9e-25  Score=194.32  Aligned_cols=211  Identities=18%  Similarity=0.161  Sum_probs=154.8

Q ss_pred             hHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-------
Q 022194           56 TRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-------  127 (301)
                      ..+.+++.+++++|.++++++++|++|+. ++.++++|||+|+++++.|++..    ..++..|.+++.++.+       
T Consensus        48 l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~----~~~~~~g~~v~~v~~~~~~~~~i  123 (364)
T d2e7ja1          48 IHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSY----VAAERAGLNIALVPKTDYPDYAI  123 (364)
T ss_dssp             HHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHH----HHHHHTTCEEEEECCCCTTTCCC
T ss_pred             HHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccc----hHHHhccceEEEeeecccccccc
Confidence            47889999999999999999999999985 77789999999999999998876    3445778888888753       


Q ss_pred             CHHHHHhhcC-----CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccc
Q 022194          128 DLDEVASAIG-----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (301)
Q Consensus       128 d~~~l~~~l~-----~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~  201 (301)
                      |+++++++++     .++++|++++|+|++|.+.|+++|+++|++||+++++|++|+.+..+ +..+.++|++++|+||+
T Consensus       124 ~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~  203 (364)
T d2e7ja1         124 TPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKS  203 (364)
T ss_dssp             CHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHH
T ss_pred             CHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceeeeccccc
Confidence            6888888885     34568899999999999999999999999999999999999988765 34456899999999999


Q ss_pred             ccCCCCceeeEEEEcchhHHHHHHHh-------hhhcCCCCCHHhHHHHHcccccHHH---HHHHHHHHHHHHHHHHHhC
Q 022194          202 IAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMAL---RVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~l~~~  271 (301)
                      +++++  ++|+++.+++.........       ....+..........+..+++...+   +..+..++++++.+.|++.
T Consensus       204 ~~~~g--~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  281 (364)
T d2e7ja1         204 MAASG--PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKL  281 (364)
T ss_dssp             SSCCS--SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCC--CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            96654  3688888765332211100       0111122222223333333333222   2334456677788888765


Q ss_pred             C
Q 022194          272 P  272 (301)
Q Consensus       272 ~  272 (301)
                      .
T Consensus       282 g  282 (364)
T d2e7ja1         282 G  282 (364)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=6.8e-24  Score=186.34  Aligned_cols=251  Identities=18%  Similarity=0.232  Sum_probs=175.8

Q ss_pred             ceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHH
Q 022194           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALA   84 (301)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~   84 (301)
                      .++++|+.+++.+.+  ++.+.... ..   .......|.+. |.+. |+++.+++.+.+|.+   +.+++++| ++++.
T Consensus        28 ~~vi~l~~G~p~~~~--p~~~~~al-~~---~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~  101 (389)
T d2gb3a1          28 VRIHHLNIGQPDLKT--PEVFFERI-YE---NKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL  101 (389)
T ss_dssp             CEEEECSSCCCCSCC--CTHHHHHH-HH---TCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred             CCEEECCCCCCCCCC--CHHHHHHH-Hh---cCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccc
Confidence            468899854444332  23222221 11   11234567776 7876 889999999887653   45666666 58886


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                       ++..++++||.|++++|.|+.+.    ..+...|.....++.+      +.+.+.....++++++++++|+||||.+.+
T Consensus       102 ~~~~~l~~~gd~V~i~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s  177 (389)
T d2gb3a1         102 FSFAVIANPGDEILVLEPFYANYN----AFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYG  177 (389)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTHHH----HHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCC
T ss_pred             ccccccccCCCeEEEeCCCCcccc----ccccccCccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccch
Confidence             66778999999999999999886    5556677777777754      345566677789999999999999999975


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCcCCccccC------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh
Q 022194          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  228 (301)
Q Consensus       158 ---l~~l~~l~~~~~~~li~D~~~~~~~~~~------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~  228 (301)
                         +++|+++|+++++++|+||+|....+..      .......+++.|+||.+ +.+|+|.||++++++.+.+......
T Consensus       178 ~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~-~~~GlRiG~~~~~~~~i~~~~~~~~  256 (389)
T d2gb3a1         178 KDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELISHAMKLA  256 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccc-cCcccceeeeeccchhHHHHHhhhh
Confidence               8889999999999999999997554432      12234678999999999 5578999999998776666544444


Q ss_pred             hhcCCCCCHHhHHHH---Hccc-ccHHHHHHHHHHHHHHHHHHHHhCCC
Q 022194          229 NAEGSGLAPFDCWIC---LRGV-KTMALRVEKQQDNAQKIAEFLASHPR  273 (301)
Q Consensus       229 ~~~~~~~~~~~~~~~---~~~l-~~~~~~~~~~~~~~~~l~~~l~~~~~  273 (301)
                      .... ..+.....++   +... +.+.+.++.+.++++.+.+.|++++.
T Consensus       257 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  304 (389)
T d2gb3a1         257 QGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGL  304 (389)
T ss_dssp             HHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hccc-cccccccccccccccccchhcccccccccccchhhhhhhhhhcc
Confidence            3333 3333333332   2222 23566667788888899999998754

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.92  E-value=1.5e-23  Score=186.31  Aligned_cols=220  Identities=15%  Similarity=0.179  Sum_probs=155.1

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC-----CceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA-----DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~-----~~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      .|++. |.+. |+++.+++.+.+|.     .+.+++++| ++++. ++..++++||+|++++|.|+.+..   .+....|
T Consensus        78 ~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~---~~~~~~g  154 (428)
T d1iaya_          78 NFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR---DLRWRTG  154 (428)
T ss_dssp             HCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH---HTTTTTC
T ss_pred             cCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHH---HHHHhcC
Confidence            57776 8877 88899999888763     134555555 68885 677889999999999999999863   2233458


Q ss_pred             cEEEEecCC-------CHHHHHhh------cCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcc
Q 022194          119 VVVKRVNTC-------DLDEVASA------IGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~------l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~  182 (301)
                      ++++.++.+       |.++++.+      ...+++++++++|+||||.+.+   +++|+++|++||++||+||+|....
T Consensus       155 ~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~  234 (428)
T d1iaya_         155 VQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATV  234 (428)
T ss_dssp             CEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred             CeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccc
Confidence            899888864       55655443      3367889999999999999975   7889999999999999999998554


Q ss_pred             ccCc----------------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhH-HHHHc
Q 022194          183 LSRP----------------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC-WICLR  245 (301)
Q Consensus       183 ~~~~----------------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  245 (301)
                      +...                ......+++.|+||.| +.+|+|.|++++.++.+.+.+................ .+.+.
T Consensus       235 ~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~GlRiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~  313 (428)
T d1iaya_         235 FDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLS  313 (428)
T ss_dssp             CSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTT
T ss_pred             cCcccccccccccchhhccccccceEEEEecCCCcc-cCCCcccccccccccchhhhhhhhhcccccccccccchhhhhh
Confidence            4311                1223568999999999 5678999999998777777655544433222222112 22222


Q ss_pred             ccc----cHHHHHHHHHHHHHHHHHHHHhC
Q 022194          246 GVK----TMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       246 ~l~----~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ...    .+.+.++.+.++.+.+.+.|+..
T Consensus       314 ~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~  343 (428)
T d1iaya_         314 DEKFVDNFLRESAMRLGKRHKHFTNGLEVV  343 (428)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhccccccccccccccchhHHHHHHHHHhC
Confidence            111    23455566677777888888763

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.91  E-value=4.9e-23  Score=183.20  Aligned_cols=217  Identities=18%  Similarity=0.209  Sum_probs=153.8

Q ss_pred             cccCC-CCch-HHHHHHHHHhhcCC----C-ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcc-cC
Q 022194           48 DYTRS-GNPT-RDALESLLAKLDKA----D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-KT  117 (301)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~~~----~-~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~-~~  117 (301)
                      .|.+. |.+. |+++.+++.+.+|.    + +.|++++| ++++. ++..+++|||+|++++|.|+.+.    ..+. ..
T Consensus        79 ~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~----~~~~~~~  154 (431)
T d1m7ya_          79 LFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFD----RDLKWRT  154 (431)
T ss_dssp             HCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHTTTTT
T ss_pred             CCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHHhc
Confidence            57776 8877 88899999988763    2 45666666 58885 66778999999999999999886    3333 45


Q ss_pred             CcEEEEecCC-------CHHHHHhhcC------CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCc
Q 022194          118 GVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (301)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~l~------~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~  181 (301)
                      |++++.++.+       |.+.+++.+.      .+++++++++|+||||.+.+   +++|+++|+++|+++|+||+|+..
T Consensus       155 g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~  234 (431)
T d1m7ya_         155 GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT  234 (431)
T ss_dssp             CCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred             CceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeeccccccc
Confidence            7888888754       5667766653      47889999999999999975   888999999999999999999754


Q ss_pred             cccCc------------------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHh--HH
Q 022194          182 VLSRP------------------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD--CW  241 (301)
Q Consensus       182 ~~~~~------------------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  241 (301)
                      .+..+                  ...+..+++.|+||.+ |.+|+|.|+++++++.+............ ..+...  ..
T Consensus       235 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~RiG~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~  312 (431)
T d1m7ya_         235 AFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYSNDDMVVAAATKMSSFGL-VSSQTQHLLS  312 (431)
T ss_dssp             CCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSS-CCGGGCEEEEEESCHHHHHHHHHHGGGSC-CCHHHHHHHH
T ss_pred             ccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccc-cCCCCccceeccchhhhHHHHHHHhcccc-ccccccchhh
Confidence            43211                  1113469999999999 56789999999987766554443333222 222211  22


Q ss_pred             HHHccc----ccHHHHHHHHHHHHHHHHHHHHh
Q 022194          242 ICLRGV----KTMALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       242 ~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~  270 (301)
                      +.+...    +.+.+.++++.++.+.+.+.|++
T Consensus       313 a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  345 (431)
T d1m7ya_         313 AMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK  345 (431)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence            222221    12455566677777888888876

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=4e-23  Score=180.06  Aligned_cols=245  Identities=17%  Similarity=0.149  Sum_probs=170.1

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT   87 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~   87 (301)
                      ..|||+.++..++  .+|.+..+....   .. ....|.+. |   ..++++.+++.++.+  ++++++++++++. ++.
T Consensus        26 ~~I~ls~g~p~~~--~p~~i~~al~~~---l~-~~~~Y~~~~G---~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~   96 (368)
T d1v2da_          26 GAVNLGQGFPSNP--PPPFLLEAVRRA---LG-RQDQYAPPAG---LPALREALAEEFAVEPESVVVTSGATEALYVLLQ   96 (368)
T ss_dssp             TCEECCCCSCSSC--CCHHHHHHHHHH---TT-TSCSCCCTTC---CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred             CCEEecCCCCCCC--CCHHHHHHHHHH---hh-cccCCCCCcC---CHHHHHHHHhhcccCCcceeeccchHHHHHHHhh
Confidence            4688884443333  334343321111   11 12345544 4   346677777777765  4555566679985 667


Q ss_pred             hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--------CHHHHHhhcCCCceEEEEeCCCCCcccccc--
Q 022194           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD--  157 (301)
Q Consensus        88 ~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~--  157 (301)
                      .++++||.|++++|.|+.+.    ......|..++.++.+        |.+.++++++++++++++++|+||||.+.+  
T Consensus        97 ~l~~~~d~v~~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~  172 (368)
T d1v2da_          97 SLVGPGDEVVVLEPFFDVYL----PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGER  172 (368)
T ss_dssp             HHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             ccccccccccccCCcchhhh----hHHHhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHH
Confidence            88999999999999999997    4445566666666542        899999999999999999999999999986  


Q ss_pred             -HHHHHHHHHHcCCEEEEeCCcCCccccCcc------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhh
Q 022194          158 -IRKIAEMAHAHGALLLVDNSIMSPVLSRPL------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  230 (301)
Q Consensus       158 -l~~l~~l~~~~~~~li~D~~~~~~~~~~~~------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~  230 (301)
                       +++|+++|++||+++|+|++|.........      .....+++.|+||.+ +.+|+|.|+++.++ .+.+.+......
T Consensus       173 ~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~-~~~G~R~g~~~~~~-~~~~~~~~~~~~  250 (368)
T d1v2da_         173 ELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRL-EATGYRVGWIVGPK-EFMPRLAGMRQW  250 (368)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHT-TCGGGCCEEEECCT-TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccc-cccccccccccccc-cccchhhhhhhc
Confidence             888999999999999999998755443221      234578899999988 56789999998875 455555555555


Q ss_pred             cCCCCCHHhHHHHHcc------cccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          231 EGSGLAPFDCWICLRG------VKTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      .....+...+..+...      .+.+...++.+.++++.+.+.|+++
T Consensus       251 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  297 (368)
T d1v2da_         251 TSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM  297 (368)
T ss_dssp             HTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc
Confidence            5555554443322222      2345666677788888899999876

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.91  E-value=9.5e-23  Score=179.29  Aligned_cols=220  Identities=13%  Similarity=0.143  Sum_probs=155.9

Q ss_pred             CCccccCCCCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           45 GPYDYTRSGNPT-RDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        45 ~~~~y~~~g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      +.++|.. |.+. |+++.+++++.+|.+   +.+++++| ++++. ++.++++|||.|++..|.|.++.    ......|
T Consensus        60 ~~~~Y~~-g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~----~~~~~~g  134 (394)
T d1c7na_          60 TVLGYTG-PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFF----MAIKNQE  134 (394)
T ss_dssp             CCCSSBC-CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHH----HHHHTTT
T ss_pred             CCcCCCC-CCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccccccccccccccCcccchh----hHHhhhh
Confidence            4456754 5555 788888888877653   45555555 68885 77889999999999999999887    4555667


Q ss_pred             cEEEEecCC--------CHHHHHhhcC-CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccCc
Q 022194          119 VVVKRVNTC--------DLDEVASAIG-PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP  186 (301)
Q Consensus       119 ~~~~~~~~~--------d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~~  186 (301)
                      ...+.++..        |.+.++..+. ++++++++++||||||.+.+   +++|+++|++++++||+||+|....+...
T Consensus       135 ~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~  214 (394)
T d1c7na_         135 RKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY  214 (394)
T ss_dssp             CEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC
T ss_pred             hcccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCc
Confidence            777666642        6777777665 57999999999999999975   77799999999999999999986544311


Q ss_pred             c----------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCC-CHHhHHHHHc----ccccHH
Q 022194          187 L----------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL-APFDCWICLR----GVKTMA  251 (301)
Q Consensus       187 ~----------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~l~~~~  251 (301)
                      .          .....+++.|+||.+ +.+|+|.|+++++++.+.+.+........... ......++..    ..+...
T Consensus       215 ~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  293 (394)
T d1c7na_         215 EHTVFQSIDEQLADKTITFTAPSKTF-NIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLD  293 (394)
T ss_dssp             CCCCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHH
T ss_pred             cccchhhhhcccccceeecccccccc-cccccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhhc
Confidence            1          124569999999999 56789999999988888776666555444332 3322222211    122345


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 022194          252 LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       252 ~~~~~~~~~~~~l~~~l~~  270 (301)
                      +..+.+.++.+.+.+.++.
T Consensus       294 ~~~~~~~~~~~~~~~~l~~  312 (394)
T d1c7na_         294 GCIKVIDKNQRIVKDFFEV  312 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhhc
Confidence            5555566666667777664

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.5e-22  Score=175.94  Aligned_cols=221  Identities=17%  Similarity=0.243  Sum_probs=153.4

Q ss_pred             CCccccCCCCch-HHHHHHHHHhhcCCC---ceEEe-cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           45 GPYDYTRSGNPT-RDALESLLAKLDKAD---RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        45 ~~~~y~~~g~~~-~~~l~~~l~~~~~~~---~~i~~-~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      +.++|.+.+.+. ++++.+++++.+|.+   +.+++ +++++++. ++..++++||+|++++|.|..+.    ..++..|
T Consensus        28 ~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g  103 (361)
T d1d2fa_          28 GVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFY----KAIEGNQ  103 (361)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHH----HHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccccccccccccccccchh----HHHHhhc
Confidence            445787774444 888888888887753   44554 55568886 67778999999999999999887    4445566


Q ss_pred             cEEEEecC--------CCHHHHHhhcC-CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC-
Q 022194          119 VVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-  185 (301)
Q Consensus       119 ~~~~~~~~--------~d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~-  185 (301)
                      ..++.++.        .|++.+++.+. ++++++++++|+||||.+.+   +++|+++|+++|+++|+||+|....+.. 
T Consensus       104 ~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~  183 (361)
T d1d2fa_         104 RTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ  183 (361)
T ss_dssp             CEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS
T ss_pred             ceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccc
Confidence            77666653        27888988885 58899999999999999975   8899999999999999999998654331 


Q ss_pred             ------ccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHH-HHhhhhcC-CCCCHHhHHHHHccc----ccHHHH
Q 022194          186 ------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-YFLQNAEG-SGLAPFDCWICLRGV----KTMALR  253 (301)
Q Consensus       186 ------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l----~~~~~~  253 (301)
                            ....+..+++.|+||.+ +.+|+|.|++........... .......+ ...+.....+.+...    ....+.
T Consensus       184 ~~~~~~~~~~~~~v~~~s~SK~~-~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  262 (361)
T d1d2fa_         184 PHIPWSNVARGDWALLTSGSKSF-NIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDAL  262 (361)
T ss_dssp             CCCCGGGTCCSSEEEEECSHHHH-TCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccccccccccccccccccccccc-ccccccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcc
Confidence                  11234568999999999 557889999987765543432 23333332 233333333322222    223455


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 022194          254 VEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       254 ~~~~~~~~~~l~~~l~~  270 (301)
                      ++.+.++++.+.+.+.+
T Consensus       263 ~~~~~~r~~~~~~~~~~  279 (361)
T d1d2fa_         263 RIYLKDNLTYIADKMNA  279 (361)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHhhh
Confidence            55666666666666654

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-22  Score=180.47  Aligned_cols=219  Identities=18%  Similarity=0.194  Sum_probs=161.6

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC----ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD----RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~----~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|++. |.+. |+++.+++.+.+|.+    +.|++++| ++++. ++..++.+||.|++++|.|+.+.    ..+...|
T Consensus        58 ~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~----~~~~~~g  133 (418)
T d1w7la_          58 NQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYE----PMTMMAG  133 (418)
T ss_dssp             GSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTT
T ss_pred             cCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhH----HHHHHcC
Confidence            357776 7776 889999999887764    34666666 58885 67778999999999999999997    5555666


Q ss_pred             cEEEEecCC-----------------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCc
Q 022194          119 VVVKRVNTC-----------------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSI  178 (301)
Q Consensus       119 ~~~~~~~~~-----------------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~  178 (301)
                      .+.+.++..                 |.+++.....++++++++++|+||||.+.+   +++|+++|+++++++|+||+|
T Consensus       134 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y  213 (418)
T d1w7la_         134 GRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVY  213 (418)
T ss_dssp             CEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred             CEeeccccccccccccccccccCcccchhhhhccccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhh
Confidence            666655532                 466677777789999999999999999974   788999999999999999999


Q ss_pred             CCccccC-----cc----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc--
Q 022194          179 MSPVLSR-----PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV--  247 (301)
Q Consensus       179 ~~~~~~~-----~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--  247 (301)
                      ....+..     ..    .....+++.|+||.+ +.+|+|.||+++++ .+...+...........+.....++...+  
T Consensus       214 ~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~pG~RvG~~v~~~-~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~  291 (418)
T d1w7la_         214 QWMVYDGHQHISIASLPGMWERTLTIGSAGKTF-SATGWKVGWVLGPD-HIMKHLRTVHQNSVFHCPTQSQAAVAESFER  291 (418)
T ss_dssp             TTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT-TCGGGCCEEEECCH-HHHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCCHHHccccccccceecccCccc-cCCCCcccccccch-hhhhhhccccccccccccchhhHHHHHHhhh
Confidence            7654321     11    123579999999999 45789999999875 45566666555555555554433332221  


Q ss_pred             ---------ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          248 ---------KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       248 ---------~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                               +.+...++.+.++++.+.+.|++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  324 (418)
T d1w7la_         292 EQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV  324 (418)
T ss_dssp             HHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccchhhhhhhhhhhhhhhhhc
Confidence                     234556677888888899998875

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.90  E-value=2.7e-23  Score=180.29  Aligned_cols=247  Identities=14%  Similarity=0.158  Sum_probs=168.8

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEecchH-HHHHHHHhc
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHL   89 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~~~~~~   89 (301)
                      .++||+.+.+++|..  |.+.........    ....|.   .+...+|++.++++++.+ +.|++++|+ +++.++..+
T Consensus        23 ~~idls~~~np~~~p--~~~~~a~~~~~~----~~~~Yp---~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~   93 (355)
T d1lc5a_          23 QLLDFSANINPLGMP--VSVKRALIDNLD----CIERYP---DADYFHLHQALARHHQVPASWILAGNGETESIFTVASG   93 (355)
T ss_dssp             GSEECSSCCCTTCCC--HHHHHHHHHTGG----GGGSCC---CTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred             heEEccCCCCCCCCC--HHHHHHHHHHHH----HhccCC---CCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhh
Confidence            578999666888852  323322111111    111232   223357899999999876 557777776 666666655


Q ss_pred             cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCcccccc---HHH
Q 022194           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRK  160 (301)
Q Consensus        90 ~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~  160 (301)
                      +.+ +.+++..|.|..+.    ......+..++.++..      ..+.+++++.+++++|++++|+||||.+.+   +++
T Consensus        94 ~~~-~~~~v~~p~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~  168 (355)
T d1lc5a_          94 LKP-RRAMIVTPGFAEYG----RALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQA  168 (355)
T ss_dssp             HCC-SEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred             hcc-ccccccCCccceec----cccccccccceeeeeeccCCccceeeeeeccccccceeeeecccCcccccchhhhhhh
Confidence            554 45566678888775    3334455666666653      235577778889999999999999999976   777


Q ss_pred             HHHHHHHcCCEEEEeCCcCCcccc------CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCC
Q 022194          161 IAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (301)
Q Consensus       161 l~~l~~~~~~~li~D~~~~~~~~~------~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  234 (301)
                      |+++|++|++++|+||+|......      .....+..+++.|+||++ |.+|+|.||++++++.+...+...  .....
T Consensus       169 i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlR~G~~i~~~~~~~~~~~~~--~~~~~  245 (355)
T d1lc5a_         169 IADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSDDAAMARMRRQ--QMPWS  245 (355)
T ss_dssp             HHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCCHHHHHHHHHH--SCTTC
T ss_pred             hhhhccccccccccccceeeeeeecccccccccccccceeeccccccc-ccccccccceeccchhhhHHHHhh--cCCcc
Confidence            889999999999999999743322      122335679999999999 667899999999877665654433  23345


Q ss_pred             CCHHhHHHHHccccc---HHHHHHHHHHHHHHHHHHHHhCCCcc
Q 022194          235 LAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       235 ~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      .+.....++...++.   +.+.++++.++.+++.+.|.+.+++.
T Consensus       246 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  289 (355)
T d1lc5a_         246 VNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLT  289 (355)
T ss_dssp             SCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             ccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcE
Confidence            566666666555553   56667788888888999998876653

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1e-22  Score=178.35  Aligned_cols=248  Identities=17%  Similarity=0.207  Sum_probs=173.5

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCC----ceEEecch-HHHHH
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKAD----RALCFTSG-MAALA   84 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~----~~i~~~sG-~~ai~   84 (301)
                      ..|||+-++.++.+  ++.+.... ..  ....+.++|++. |.+. |+++.+++.+.+|.+    +.+++|+| ++++.
T Consensus        27 ~~i~l~~G~Pd~~~--p~~i~~a~-~~--~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~  101 (382)
T d1u08a_          27 QAINLSQGFPDFDG--PRYLQERL-AH--HVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY  101 (382)
T ss_dssp             TCEECCCSSCSSCC--CHHHHHHH-HH--HHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred             CCEEccCCCCCCCC--CHHHHHHH-HH--HHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHH
Confidence            56898855554432  22222211 11  112245578777 8776 888999999887643    34666666 58885


Q ss_pred             -HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCcccccc
Q 022194           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (301)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~  157 (301)
                       ++..++++||.|++++|.|+.+.    ......|..+..++.+      |++++++.+.++++++++++|+||||.+.+
T Consensus       102 ~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~  177 (382)
T d1u08a_         102 AAITALVRNGDEVICFDPSYDSYA----PAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQ  177 (382)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHhhcccccceEEEecccccchh----hhhhhccccceecccccccccCCHHHHhhhhccCccEEEECCCCcccccccc
Confidence             67888999999999999999987    4445566666655543      789999999999999999999999999976


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCcCCccccCc---------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHH
Q 022194          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (301)
Q Consensus       158 ---l~~l~~l~~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~  225 (301)
                         +++|+++|++++++++.|+.|........         ...+..+++.|+||.+ +.+|+|.||+++++ .+.+.+.
T Consensus       178 ~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~pG~RiG~~v~~~-~~~~~~~  255 (382)
T d1u08a_         178 QADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTY-HMTGWKVGYCVAPA-PISAEIR  255 (382)
T ss_dssp             HHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHT-TCGGGCCEEEECCH-HHHHHHH
T ss_pred             cccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccc-cCCcccchhhhccc-hhHHHHH
Confidence               67788888999999999999875433211         1124579999999999 56789999999865 4555555


Q ss_pred             HhhhhcCCCCCHHhHHHHHccc----ccHHHHHHHHHHHHHHHHHHHHh
Q 022194          226 FLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ..........+...+.++...+    +++.+.++.+.++++.+.+.++.
T Consensus       256 ~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (382)
T d1u08a_         256 KVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE  304 (382)
T ss_dssp             HHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS
T ss_pred             hhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence            5555555555555444443332    33555666777777777777654

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.89  E-value=2.1e-23  Score=181.60  Aligned_cols=196  Identities=20%  Similarity=0.221  Sum_probs=145.1

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecchHHHHH-HHHhccCCCCeEE-Ec-CCCCccHHHHHhhhcccCCcEEEEecCCCHH
Q 022194           57 RDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIV-AG-DDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD  130 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~sG~~ai~-~~~~~~~~g~~Vl-v~-~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~  130 (301)
                      .+++++...+.++.+   +++++++|++|+. ++.+ +.+++.|+ ++ .|.|.++.    ..++..|+++  ++.+|++
T Consensus        52 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~a-l~~~~~vi~~~~~~~~~~~~----~~~~l~g~~~--v~~~d~e  124 (366)
T d2aeua1          52 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILA-LKPKKVIHYLPELPGHPSIE----RSCKIVNAKY--FESDKVG  124 (366)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH-HCCSEEEEECSSSSCCTHHH----HHHHHTTCEE--EEESCHH
T ss_pred             HHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHH-hCCCCEEEEecCCCcchhHH----HHHHhcCCeE--ECCCCHH
Confidence            567777777777543   5667777888886 5555 55666654 43 47888886    4445567665  4556999


Q ss_pred             HHHhhcCCCceEEEEeCCCCCc-cccccHHHHHHHHHHcCCEEEEeCCcCCcccc-----CccCCCCcEEEecccccccC
Q 022194          131 EVASAIGPWTKLVWVESPTNPR-QQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       131 ~l~~~l~~~~~~v~i~~~~np~-G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~S~sK~~~g  204 (301)
                      ++++++++++++|++++|+||+ +...++++|+++|++||+++++||+|+.+.+.     .+...++|++++|+||+++|
T Consensus       125 ~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g  204 (366)
T d2aeua1         125 EILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG  204 (366)
T ss_dssp             HHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred             HHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEecccccccc
Confidence            9999999999999999998864 45678999999999999999999999865432     33456899999999999966


Q ss_pred             CCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccH-HHHHHHHHHHHHH
Q 022194          205 HSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM-ALRVEKQQDNAQK  263 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~  263 (301)
                      +   ++|++++++ .+.+.++......+...++..++++.++++.+ ..+.++..++++.
T Consensus       205 ~---~~G~i~~~~-~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~  260 (366)
T d2aeua1         205 P---RGGLLAGKK-ELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKN  260 (366)
T ss_dssp             C---SCEEEEEEH-HHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             c---ceeEEEecH-HHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4   579999875 56677777777777788888888877776543 2344455555443

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.89  E-value=6.5e-22  Score=173.04  Aligned_cols=217  Identities=19%  Similarity=0.168  Sum_probs=163.8

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      .+++++.+++++|++  ++++++|||+++. ++.++ .++||+|+++++.|++....+....+..|++++.++.+     
T Consensus        52 ~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~  131 (381)
T d1elua_          52 IAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQ  131 (381)
T ss_dssp             HHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSS
T ss_pred             HHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeecccccccccccccccccccccccc
Confidence            678899999999976  5666666789986 44555 67999999999999998888878888889999999864     


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc----CCEEEEeCCcCCcccc-CccCCCCcEEEecccc
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH----GALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~----~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK  200 (301)
                        ..+.+++.++++++++++++++|+||.+.|+++|.++||++    ++++++|++++.+... +....++|+++.|++|
T Consensus       132 ~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K  211 (381)
T d1elua_         132 GDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHK  211 (381)
T ss_dssp             SCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSS
T ss_pred             chHHHHHHhhhcccccccccccccccccccchhhHHHHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence              25667888889999999999999999999999999999984    6999999999988765 4445689999999999


Q ss_pred             cccCCCCceeeEEEEcchhHHHHHHHh----------------------hhhcCCCCCHHhHHHHHccccc------HHH
Q 022194          201 FIAGHSDVMAGVLAVKGERLAKELYFL----------------------QNAEGSGLAPFDCWICLRGVKT------MAL  252 (301)
Q Consensus       201 ~~~g~~g~~~g~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~~------~~~  252 (301)
                      ++++|.|+  |+++.+++.. +.+...                      ......+.+....+.+..+++.      ...
T Consensus       212 ~~~~p~G~--g~l~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~  288 (381)
T d1elua_         212 WFAGPAGV--GGLYIHGDCL-GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEE  288 (381)
T ss_dssp             TTCCCTTC--EEEEECTTTG-GGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             cccccchh--hHHHhhHHHH-HhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhccccc
Confidence            99988874  7888776543 211100                      0011123333333333333332      244


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcce
Q 022194          253 RVEKQQDNAQKIAEFLASHPRVKK  276 (301)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~v~~  276 (301)
                      +.++..++++++.+.|++++++..
T Consensus       289 ~~~~~~~~~~~l~~~L~~~~~~~~  312 (381)
T d1elua_         289 RYQAICQRSEFLWRGLNQLPHVHC  312 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             chhhhhhHHHHHHHHHhcCCCeEe
Confidence            557778888899999999887644

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.1e-22  Score=180.41  Aligned_cols=217  Identities=14%  Similarity=0.161  Sum_probs=150.1

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC----ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD----RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~----~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|++. |.+. |+++.+++++.+|.+    +.+++++| ++++. ++..++++||.|++++|.|..+.    ..++..|
T Consensus        74 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~----~~~~~~g  149 (420)
T d1vp4a_          74 LQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAI----NAFRQYL  149 (420)
T ss_dssp             TSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTT
T ss_pred             cCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchh----HHHHHHh
Confidence            357766 7877 888999999887643    55666666 58886 66778999999999999999886    5566778


Q ss_pred             cEEEEecCC----CHHHHHhhc---------CCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcc
Q 022194          119 VVVKRVNTC----DLDEVASAI---------GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (301)
Q Consensus       119 ~~~~~~~~~----d~~~l~~~l---------~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~  182 (301)
                      ..++.++.+    +++.++..+         .+...++++++|+||||.+.+   +++|+++|+++++++|+||+|....
T Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~  229 (420)
T d1vp4a_         150 ANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALR  229 (420)
T ss_dssp             CEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCB
T ss_pred             hhcccccccccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhcc
Confidence            888888754    455443322         123446667899999999974   7889999999999999999998654


Q ss_pred             ccCc--------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc------c
Q 022194          183 LSRP--------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV------K  248 (301)
Q Consensus       183 ~~~~--------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~  248 (301)
                      +...        ...+..++++|++|++ + +|+|.||+++++ .+.+.+...........+...+..+...+      +
T Consensus       230 ~~~~~~~~~~~~~~~~~~i~~~s~sk~~-~-~G~RiG~~~~~~-~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~  306 (420)
T d1vp4a_         230 YEGETVDPIFKIGGPERVVLLNTFSKVL-A-PGLRIGMVAGSK-EFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLE  306 (420)
T ss_dssp             CSSCCCCCHHHHHCTTTEEEEEESTTTT-C-GGGCEEEEECCH-HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHH
T ss_pred             ccCcccccccccccccceeEEecccccc-c-cccccccccccc-hhhhhhhhhhhhccccCchhhhhhhhhhcccccccc
Confidence            4321        1235678888999987 4 689999999865 56566555554444444444333322221      2


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHh
Q 022194          249 TMALRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~  270 (301)
                      ++.+.++.+.++...+.+.|++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~L~~  328 (420)
T d1vp4a_         307 QLKPTIELYRRKRTVMLNALEE  328 (420)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhhcccchhhhhh
Confidence            2344455566666666666654

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.88  E-value=9.5e-22  Score=173.30  Aligned_cols=217  Identities=17%  Similarity=0.136  Sum_probs=150.0

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecch-HHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG-~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~  119 (301)
                      ..|++. |.+. |+++.+++.+.+|.+   +.+++++| ++++. ++..++++||+|++++|+|..+.    ..+...|.
T Consensus        65 ~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~----~~~~~~g~  140 (403)
T d1wsta1          65 LQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAI----QAFKYYDP  140 (403)
T ss_dssp             HSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTCC
T ss_pred             cCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhh----HHHhhccc
Confidence            457776 8877 889999998887643   45555555 58886 56678999999999999999997    55567788


Q ss_pred             EEEEecCC----CHH-------HHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcccc-
Q 022194          120 VVKRVNTC----DLD-------EVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-  184 (301)
Q Consensus       120 ~~~~~~~~----d~~-------~l~~~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~-  184 (301)
                      ++..++.+    +..       ......++...++++++|+||||.+.+   +++|+++|++||++||+||+|....+. 
T Consensus       141 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~  220 (403)
T d1wsta1         141 EFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSG  220 (403)
T ss_dssp             EEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS
T ss_pred             cceeEeecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCC
Confidence            88887754    121       222233356667888999999999975   778999999999999999999754332 


Q ss_pred             -------CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHH---Hccc---ccHH
Q 022194          185 -------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC---LRGV---KTMA  251 (301)
Q Consensus       185 -------~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l---~~~~  251 (301)
                             .....+..++++|+||++ + +|+|.||+++++ .+.+.+...........+.......   ....   +.+.
T Consensus       221 ~~~~~~~~~~~~~~~i~~~S~SK~~-~-~G~RiG~~i~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (403)
T d1wsta1         221 EPTPPIKHFDDYGRVIYLGTFSKIL-A-PGFRIGWVAAHP-HLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIP  297 (403)
T ss_dssp             CCCCCGGGGCSSSCEEEEEESTTTT-C-GGGCCEEEEECH-HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCCCcccccCCCCcEEEEcccccee-c-Ccccccccccch-HHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHH
Confidence                   122446789999999998 5 689999999975 4445444443333333333332222   1111   1234


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 022194          252 LRVEKQQDNAQKIAEFLAS  270 (301)
Q Consensus       252 ~~~~~~~~~~~~l~~~l~~  270 (301)
                      +.++.+..+.+.+.+.|.+
T Consensus       298 ~~~~~~~~~~~~~~~~L~~  316 (403)
T d1wsta1         298 KIIEFYKPRRDAMLEALEE  316 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            5556666777777777765

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=6.4e-21  Score=165.09  Aligned_cols=215  Identities=17%  Similarity=0.197  Sum_probs=150.4

Q ss_pred             CchHHHHHHHHHhhcCCC-ceEEecchH-HHHH-HHHhccCCCC-eEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           54 NPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGE-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~-~~i~~~sG~-~ai~-~~~~~~~~g~-~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      ++...+|++++++++|.+ +.|++++|+ +++. ++..+++||| .|++++|.|..+.    ..++..|.+++.++.+  
T Consensus        55 d~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~----~~~~~~g~~v~~~~~~~~  130 (354)
T d1fg7a_          55 ECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVECRTVPTLDN  130 (354)
T ss_dssp             CSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHH----HHHHHHTCEEEECCCCTT
T ss_pred             CCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccch----hhhhccCceeeccccccc
Confidence            344578999999999876 667777775 8886 6677889998 5888999999886    5556678888888754  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH--HHHcCCEEEEeCCcCCcccc-----CccCCCCcEEEec
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM--AHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHS  197 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l--~~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~S  197 (301)
                         |+++++.++. ++++|++++|+||||.+.+.+++..+  +.+++.++++||+|......     ........+++.|
T Consensus       131 ~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S  209 (354)
T d1fg7a_         131 WQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT  209 (354)
T ss_dssp             SCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred             cccchhhhhhccc-ccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhcccccceEEeC
Confidence               7888888774 79999999999999999874443333  23467888888887643322     1223456789999


Q ss_pred             ccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc--c---cHHHHHHHHHHHHHHHHHHHHhCC
Q 022194          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV--K---TMALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       198 ~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~---~~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      |||+| |.+|+|.||+++++ .+.+.+.....  .+..+...+..+...+  +   ......+++.++++.+.+.+.+++
T Consensus       210 ~SK~~-~laGlRiGy~i~~~-~~i~~l~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~  285 (354)
T d1fg7a_         210 LSKAF-ALAGLRCGFTLANE-EVINLLMKVIA--PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIP  285 (354)
T ss_dssp             SSSTT-CCGGGCCEEEEECH-HHHHHHHHHSC--SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             Ccccc-CCCccccccccccc-hhhhhhhhhcC--ccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCC
Confidence            99999 67799999999875 45555443332  3334443333322222  1   234455667777788888888887


Q ss_pred             CcceE
Q 022194          273 RVKKV  277 (301)
Q Consensus       273 ~v~~v  277 (301)
                      .+..+
T Consensus       286 ~~~~~  290 (354)
T d1fg7a_         286 CVEQV  290 (354)
T ss_dssp             TEEEE
T ss_pred             Cccee
Confidence            65444

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=3.3e-22  Score=171.90  Aligned_cols=246  Identities=10%  Similarity=0.054  Sum_probs=159.4

Q ss_pred             ccceeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCC-CCch-HHHHHHHHHhhcCCCceEEecchH-HHHHH
Q 022194            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPT-RDALESLLAKLDKADRALCFTSGM-AALAA   85 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~~~~~~i~~~sG~-~ai~~   85 (301)
                      +..+++.++.++++++.  ++.+.......   .......|.+. |.+. ++++.+++....=..+.|++++|+ +++.+
T Consensus        17 ~~~d~~~l~~~enp~~~--p~~i~~~~~~~---~~~~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~   91 (334)
T d2f8ja1          17 EKRDKTYLALNENPFPF--PEDLVDEVFRR---LNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYV   91 (334)
T ss_dssp             CCCCSEECSSCCCSSCC--CHHHHHHHHHH---CCTTGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHH
T ss_pred             cCCCceEEECCCCCCCC--CHHHHHHHHHH---hhcchhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHH
Confidence            34466777645555553  23333222111   11233333333 5544 455544443321123567777775 77765


Q ss_pred             HHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 022194           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (301)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~  165 (301)
                      +.   +++|+|++++|+|..+.    ..++..|++++.++.++-....+...++++++++++|+||||.+.+.++|.++ 
T Consensus        92 l~---~~~d~v~i~~P~y~~~~----~~~~~~g~~~v~v~~~~~~~~~~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~~-  163 (334)
T d2f8ja1          92 MM---LMFDRSVFFPPTYSCYR----IFAKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIERI-  163 (334)
T ss_dssp             HH---HHSSEEEECSSCCHHHH----HHHHHHTCCEEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCCCCHHHHHHH-
T ss_pred             Hh---hhccccccccccccccc----cchhccCCccccccccccccccccccccceEEEecccccccceeecHHHhhcc-
Confidence            43   45699999999999986    55567789999999763333334445788999999999999999998888775 


Q ss_pred             HHcCCEEEEeCCcCCcccc----CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHH
Q 022194          166 HAHGALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  241 (301)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~----~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (301)
                      .++++++|+||+|......    .....+..+++.|+||++ +.+|+|.|+++++ +.+.+.+......  +..+.....
T Consensus       164 ~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~-~~~i~~l~~~~~~--~~~s~~~~~  239 (334)
T d2f8ja1         164 LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAF-SLAAQRVGYVVAS-EKFIDAYNRVRLP--FNVSYVSQM  239 (334)
T ss_dssp             HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTS-SCTTTCEEEEEEC-HHHHHHHHHHSCT--TCSCHHHHH
T ss_pred             ccceeEEeecccchhhcccccccccccCceEEEEecCcccc-chhhhhhhhcccc-hHHHHHHHHhhcc--cccchhhhh
Confidence            5679999999998543322    223345679999999999 5678999999996 4565655554432  334444443


Q ss_pred             HH---HcccccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          242 IC---LRGVKTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       242 ~~---~~~l~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++   +...+.+.+.++.+.++++++.+.|+++
T Consensus       240 ~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  272 (334)
T d2f8ja1         240 FAKVALDHREIFEERTKFIVEERERMKSALREM  272 (334)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence            33   3333445667788888888999999886

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.87  E-value=5e-21  Score=168.54  Aligned_cols=221  Identities=11%  Similarity=0.046  Sum_probs=153.6

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC---CceEEecch---H---HHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA---DRALCFTSG---M---AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVT  114 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~---~~~i~~~sG---~---~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~  114 (301)
                      .+|.+. |.+. |+++.+++.+..+.   ++.++++.|   +   .++. ++..+++|||+|++++|.|+.+.    ..+
T Consensus        65 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~----~~~  140 (401)
T d7aata_          65 KEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHT----PIF  140 (401)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHH----HHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchh----hHH
Confidence            468777 8877 88898888877653   244443322   2   2343 45668999999999999999997    666


Q ss_pred             ccCCcEEEEecCC-------CHHHHHhhcC---CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCc
Q 022194          115 PKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (301)
Q Consensus       115 ~~~g~~~~~~~~~-------d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~  181 (301)
                      +..|.+++.++..       +++.+++.+.   ++++++++++||||||.+.+   +++|+++|++|++++|+||+|...
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l  220 (401)
T d7aata_         141 RDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGF  220 (401)
T ss_dssp             HHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTT
T ss_pred             HHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhh
Confidence            7889999988863       6677766664   67889999999999999975   788999999999999999999876


Q ss_pred             cccCc-----------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHH------HhhhhcCCCCCHHhHHHHH
Q 022194          182 VLSRP-----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY------FLQNAEGSGLAPFDCWICL  244 (301)
Q Consensus       182 ~~~~~-----------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  244 (301)
                      .+...           ......+++.|++|.+ +.+|.|.|+++++.+......+      ..........+...+....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  299 (401)
T d7aata_         221 ASGDINRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIAS  299 (401)
T ss_dssp             TTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             hcCCcccchhhhhhhhhhhcccceeEeccccc-eeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHH
Confidence            65421           1223468889999998 6678999999998654322111      1111112222333333222


Q ss_pred             ccc----------ccHHHHHHHHHHHHHHHHHHHHhCC
Q 022194          245 RGV----------KTMALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       245 ~~l----------~~~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      ..+          +.+.+.++++.++++.+.+.|+++.
T Consensus       300 ~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  337 (401)
T d7aata_         300 LILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG  337 (401)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            221          2234556677777888888888754

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.2e-21  Score=169.19  Aligned_cols=159  Identities=23%  Similarity=0.226  Sum_probs=133.0

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHh----ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~----~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .+++++.+++++|++  ++++++++|+++. ++.+    .+++||+|+++++.|+++...+. .++..|++++.++.+  
T Consensus        50 ~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~~~  128 (391)
T d1p3wa_          50 VDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR-QLEREGFEVTYLAPQRN  128 (391)
T ss_dssp             HHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHH-HHHHTTCEEEEECCCTT
T ss_pred             HHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHH-HHHHcCCEEEEeCCCCC
Confidence            567888999999987  4455555678875 3333    36899999999999999876663 456679999999865  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccccc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (301)
                         |+++++++++++|++|++++++|+||.+.|+++|+++||++|+++++|++|+.+... +....+.|+++.|.+|++ 
T Consensus       129 ~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~-  207 (391)
T d1p3wa_         129 GIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY-  207 (391)
T ss_dssp             SCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTT-
T ss_pred             CeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhcccccccccccccc-
Confidence               789999999999999999999999999999999999999999999999999988765 455678999999999998 


Q ss_pred             CCCCceeeEEEEcchh
Q 022194          204 GHSDVMAGVLAVKGER  219 (301)
Q Consensus       204 g~~g~~~g~~~~~~~~  219 (301)
                      ||+|  .|+++.+++.
T Consensus       208 g~~g--~g~~~~~~~~  221 (391)
T d1p3wa_         208 GPKG--IGALYVRRKP  221 (391)
T ss_dssp             SCSS--CEEEEECBTT
T ss_pred             CCCc--eEEEEEecch
Confidence            6766  4777777653

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.86  E-value=1.1e-20  Score=164.77  Aligned_cols=211  Identities=18%  Similarity=0.221  Sum_probs=167.0

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .+..+++|+.+++++|.+.+++++|||+|+. ++.++ +++||+|++++..|.+..    ......|..++.++.+    
T Consensus        30 G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~----~ai~~~g~~pv~~d~~~~~~  105 (376)
T d1mdoa_          30 GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTL----NMIVLLGANPVMVDVDRDTL  105 (376)
T ss_dssp             SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHH----HHHHHTTCEEEEECBCTTTC
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccc----cchhccccceeeeccccccc
Confidence            4778999999999999999999999999986 55556 789999999999999887    4445778888888754    


Q ss_pred             --CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCC-CcEEEecc--cccc
Q 022194          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG-ADIVMHSA--TKFI  202 (301)
Q Consensus       128 --d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~-~di~~~S~--sK~~  202 (301)
                        |++++++++.+++++|+++   +..|...|+++|.++|+++|+++|+|++++.|........| .+..+.||  +|.+
T Consensus       106 ~~d~~~l~~~i~~~tkaIi~~---h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l  182 (376)
T d1mdoa_         106 MVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNI  182 (376)
T ss_dssp             CBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSS
T ss_pred             CCCHHHHHHhcCCCCeEEEEe---CCCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCCcCCC
Confidence              8999999999999999865   45788899999999999999999999999988653322111 23455565  5988


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhhhhc------------------------CCCCCHHhHHHHHcccccHHHHHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQNAE------------------------GSGLAPFDCWICLRGVKTMALRVEKQQ  258 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~  258 (301)
                      .++   .+|+++++++.+.++++......                        ...++...++.....++.+.+..++..
T Consensus       183 ~~g---~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r~  259 (376)
T d1mdoa_         183 TCA---EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRA  259 (376)
T ss_dssp             CSS---SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             CCC---CCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHHh
Confidence            653   36999999988887776554221                        123455667777777888888889999


Q ss_pred             HHHHHHHHHHHhCCCc
Q 022194          259 DNAQKIAEFLASHPRV  274 (301)
Q Consensus       259 ~~~~~l~~~l~~~~~v  274 (301)
                      ++++++.+.|++.+.+
T Consensus       260 ~~~~~~~~~L~~~~~~  275 (376)
T d1mdoa_         260 AIAAQYHQAMADLPFQ  275 (376)
T ss_dssp             HHHHHHHHHHHTSSCE
T ss_pred             hhhhhhhhhccccccc
Confidence            9999999999987644

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.86  E-value=2.2e-20  Score=163.29  Aligned_cols=213  Identities=19%  Similarity=0.247  Sum_probs=171.2

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---  127 (301)
                      +.+..+++|+++++++|.+.++.++|||+|+. ++.++ +++||+|++++.+|....    ..+...|..++.++.+   
T Consensus        32 ~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~----~ai~~~g~~p~~~d~~~~~  107 (384)
T d1b9ha_          32 GGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSS----QAAQRLGAVTVPVDVDAAT  107 (384)
T ss_dssp             TCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTT
T ss_pred             CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccc----ccccccccccccccccccc
Confidence            45789999999999999999999999999986 44444 789999999999999886    5556788888888854   


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccC--CCCcEEEecc--cc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE--LGADIVMHSA--TK  200 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~--~~~di~~~S~--sK  200 (301)
                         |++.+++.+.+++++|+   +.+..|...++++|.++|+++++++|+|.+++.|.......  ...|+.+.||  +|
T Consensus       108 ~~~d~~~~~~~i~~~tk~i~---~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K  184 (384)
T d1b9ha_         108 YNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGK  184 (384)
T ss_dssp             CCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTS
T ss_pred             cccchhhhcccccccccccc---cccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceecccccc
Confidence               79999999999999987   55667888999999999999999999999998877543221  2246667665  78


Q ss_pred             cccCCCCceeeEEEEcchhHHHHHHHhhhhc---------------C--CCCCHHhHHHHHcccccHHHHHHHHHHHHHH
Q 022194          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAE---------------G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQK  263 (301)
Q Consensus       201 ~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~---------------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (301)
                      .++++   .+|+++++++.+.+.++......               |  .-++..+++.....++.+++..++..+++++
T Consensus       185 ~i~~g---~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~~~  261 (384)
T d1b9ha_         185 LMTAG---EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTL  261 (384)
T ss_dssp             SSCSS---SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccccc---ccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhhhhhhh
Confidence            88543   37999999888877765544321               1  2256677878888899999999999999999


Q ss_pred             HHHHHHhCCCcc
Q 022194          264 IAEFLASHPRVK  275 (301)
Q Consensus       264 l~~~l~~~~~v~  275 (301)
                      +.+.|++.+++.
T Consensus       262 y~~~L~~~~~i~  273 (384)
T d1b9ha_         262 LSRLLGAIDGVV  273 (384)
T ss_dssp             HHHHHHTSTTCE
T ss_pred             hhhhhhcccccc
Confidence            999999887663

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.2e-20  Score=166.17  Aligned_cols=160  Identities=16%  Similarity=0.195  Sum_probs=137.1

Q ss_pred             HHHHHHHHHhhcCCC---ceEEecchHHHHHHH-H----hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDKAD---RALCFTSGMAALAAV-T----HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~---~~i~~~sG~~ai~~~-~----~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      .++.++.+++++++.   +.+++.++|+++..+ .    ...++||+|++.+..|++....|...++..|+++++++.+ 
T Consensus        68 ~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~  147 (405)
T d1jf9a_          68 MENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP  147 (405)
T ss_dssp             HHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT
T ss_pred             HHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCC
Confidence            677888999999853   445555567887533 2    2468899999999999999988988889999999999854 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          |++.+++++++++++|.+++.+|.+|.+.|+++|+++||++|+++++|.+++.|... +....++|+++.|++||+
T Consensus       148 ~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~  227 (405)
T d1jf9a_         148 DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLY  227 (405)
T ss_dssp             TSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT
T ss_pred             CCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCCceeeccccccc
Confidence                789999999999999999999999999999999999999999999999999999875 556789999999999997


Q ss_pred             cCCCCceeeEEEEcchh
Q 022194          203 AGHSDVMAGVLAVKGER  219 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~  219 (301)
                       ||.|  .|+++.+++.
T Consensus       228 -Gp~G--~g~l~v~~~~  241 (405)
T d1jf9a_         228 -GPTG--IGILYVKEAL  241 (405)
T ss_dssp             -SCSS--CEEEEECHHH
T ss_pred             -cCCC--ceeeeechhh
Confidence             7888  4888887543

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.85  E-value=3.1e-20  Score=163.92  Aligned_cols=222  Identities=14%  Similarity=0.102  Sum_probs=150.1

Q ss_pred             CCccccCC-CCch-HHHHHHHHHhhcCC---CceEEe--cc-hHHHHH---HHHhccCCCCeEEEcCCCCccHHHHHhhh
Q 022194           45 GPYDYTRS-GNPT-RDALESLLAKLDKA---DRALCF--TS-GMAALA---AVTHLLGTGEEIVAGDDLYGGTDRLLSRV  113 (301)
Q Consensus        45 ~~~~y~~~-g~~~-~~~l~~~l~~~~~~---~~~i~~--~s-G~~ai~---~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~  113 (301)
                      ..+.|.+. |.+. |+++.+++.+..+.   ++.+++  ++ |..++.   .+...+.+||.|++++|.|+.+.    ..
T Consensus        65 ~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~----~~  140 (412)
T d1yaaa_          65 YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHM----AI  140 (412)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHH----HH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhH----HH
Confidence            34568877 8877 88888888776653   222222  22 233332   23446789999999999999997    66


Q ss_pred             cccCCcEEEEecCC-------CHHHHHhhcC---CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 022194          114 TPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (301)
Q Consensus       114 ~~~~g~~~~~~~~~-------d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~  180 (301)
                      +...|.+++.++..       +.+.+++.+.   +.++++++++||||||.+.+   +++|+++|+++++++|+||+|..
T Consensus       141 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~  220 (412)
T d1yaaa_         141 FENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQG  220 (412)
T ss_dssp             HHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             HHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeee
Confidence            67788888888752       5566655553   56778999999999999975   88899999999999999999986


Q ss_pred             ccccCc--------------cCCCCcEEEecccccccCCCCceeeEEEEcchhHH------HH----HHHhhhhcCCCCC
Q 022194          181 PVLSRP--------------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA------KE----LYFLQNAEGSGLA  236 (301)
Q Consensus       181 ~~~~~~--------------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~------~~----~~~~~~~~~~~~~  236 (301)
                      ..+...              ......+++.|+||.+ +.+|+|.||++++++...      ..    ............+
T Consensus       221 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (412)
T d1yaaa_         221 FATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA-GMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPP  299 (412)
T ss_dssp             TSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-CCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCC
T ss_pred             cccCCcccchhhhhhhhhccccCCCeEEEEecCCcc-ccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            655421              2234569999999999 667899999999865321      11    1111122223334


Q ss_pred             HHhHHHHHccc----------ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          237 PFDCWICLRGV----------KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       237 ~~~~~~~~~~l----------~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ...+..+...+          +.+...++.+.++++.+.+.|+++
T Consensus       300 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  344 (412)
T d1yaaa_         300 AYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL  344 (412)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444433222          224455566777777788888764

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.84  E-value=4.1e-20  Score=163.17  Aligned_cols=223  Identities=15%  Similarity=0.069  Sum_probs=144.7

Q ss_pred             CCccccCC-CCch-HHHHHHHHHhhcCC----Cce-EEec-chHHHHH----HH----HhccCCCCeEEEcCCCCccHHH
Q 022194           45 GPYDYTRS-GNPT-RDALESLLAKLDKA----DRA-LCFT-SGMAALA----AV----THLLGTGEEIVAGDDLYGGTDR  108 (301)
Q Consensus        45 ~~~~y~~~-g~~~-~~~l~~~l~~~~~~----~~~-i~~~-sG~~ai~----~~----~~~~~~g~~Vlv~~~~y~~~~~  108 (301)
                      ....|.+. |.|. |+++.+++.+..+.    +.. ++.+ +++.++.    ++    ..+++|||+|++++|.|+.+. 
T Consensus        66 ~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~-  144 (412)
T d1ajsa_          66 LNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHN-  144 (412)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHH-
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhH-
Confidence            34568877 8887 88888888776543    332 3333 3343332    11    224789999999999999997 


Q ss_pred             HHhhhcccCCcEEEEecC--------CCHHHHHhh---cCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEE
Q 022194          109 LLSRVTPKTGVVVKRVNT--------CDLDEVASA---IGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLV  174 (301)
Q Consensus       109 ~~~~~~~~~g~~~~~~~~--------~d~~~l~~~---l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~  174 (301)
                         ..++..|.+.+.+++        .|++.+++.   ..++++++++++||||||.+.+   +++|+++|++||+++|+
T Consensus       145 ---~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~  221 (412)
T d1ajsa_         145 ---GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFF  221 (412)
T ss_dssp             ---HHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             ---HHHHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEe
Confidence               445556654333321        156665554   3578889999999999999975   88899999999999999


Q ss_pred             eCCcCCccccCc-----------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHH------HHhhhhcCCCCCH
Q 022194          175 DNSIMSPVLSRP-----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL------YFLQNAEGSGLAP  237 (301)
Q Consensus       175 D~~~~~~~~~~~-----------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~  237 (301)
                      ||+|....+...           ......+++.|+||.+ +.+|.|.|++++.........      ...........+.
T Consensus       222 De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (412)
T d1ajsa_         222 DSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF-GLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPA  300 (412)
T ss_dssp             EESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCS
T ss_pred             cHhhhhhhcCCcccchhhhhhhhhhcccccccccccccc-cCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccch
Confidence            999986655421           1224568899999999 557889999998865332211      1111111222233


Q ss_pred             HhHHHHHcc----------cccHHHHHHHHHHHHHHHHHHHHhCC
Q 022194          238 FDCWICLRG----------VKTMALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       238 ~~~~~~~~~----------l~~~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      ..+.++...          .+.+...++++.++++.+.+.|+.+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~  345 (412)
T d1ajsa_         301 QGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK  345 (412)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            333222111          12244556677777888888888753

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=7.3e-21  Score=167.25  Aligned_cols=170  Identities=14%  Similarity=0.087  Sum_probs=127.8

Q ss_pred             CCccccCC-CCch-HHHHHHHHHhhcCC---CceEEecch-H--H--HHH-HHHhccCCCCeEEEcCCCCccHHHHHhhh
Q 022194           45 GPYDYTRS-GNPT-RDALESLLAKLDKA---DRALCFTSG-M--A--ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRV  113 (301)
Q Consensus        45 ~~~~y~~~-g~~~-~~~l~~~l~~~~~~---~~~i~~~sG-~--~--ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~  113 (301)
                      ....|.+. |.+. |+++.+++.+..+.   ++.++++.| +  .  ++. .+..++.|||+|++++|.|..+.    ..
T Consensus        62 ~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~----~~  137 (397)
T d3tata_          62 GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHV----AI  137 (397)
T ss_dssp             SSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHH----HH
T ss_pred             cCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccH----HH
Confidence            45568887 8887 88888888776653   233433322 2  2  233 44557899999999999999997    66


Q ss_pred             cccCCcEEEEecCC-------CHHHHHhhcC---CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 022194          114 TPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (301)
Q Consensus       114 ~~~~g~~~~~~~~~-------d~~~l~~~l~---~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~  180 (301)
                      ++..|.+++.++..       +.+.+.+.+.   ++++++++++||||||.+.+   +++|+++|+++++++|+||+|..
T Consensus       138 ~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~  217 (397)
T d3tata_         138 FAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQG  217 (397)
T ss_dssp             HHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTT
T ss_pred             HHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhh
Confidence            67888888888864       4555555543   57788999999999999975   78899999999999999999986


Q ss_pred             ccccC----------ccCCCCcEEEecccccccCCCCceeeEEEEcchh
Q 022194          181 PVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (301)
Q Consensus       181 ~~~~~----------~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~  219 (301)
                      ..+..          .......+++.|+||.+ +.+|+|.|+++++...
T Consensus       218 l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~  265 (397)
T d3tata_         218 FGAGMEEDAYAIRAIASAGLPALVSNSFSKIF-SLYGERVGGLSVMCED  265 (397)
T ss_dssp             SSSCHHHHHHHHHHHHTTTCCCEECBCCHHHH-TBTTTCCBCCEEECSS
T ss_pred             hccCCcccchhhhhhhhcCCceEEEecCcccc-cccCccccccccchhH
Confidence            65431          11223569999999999 6678999999987654

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.83  E-value=3.2e-20  Score=163.31  Aligned_cols=205  Identities=21%  Similarity=0.235  Sum_probs=144.7

Q ss_pred             hHHHHHHHHHhhc---C-C--C-ceEEecchH-HHHH-HHHhc--------cCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           56 TRDALESLLAKLD---K-A--D-RALCFTSGM-AALA-AVTHL--------LGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        56 ~~~~l~~~l~~~~---~-~--~-~~i~~~sG~-~ai~-~~~~~--------~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ...+|++.+++++   | +  + .-|++++|+ ++|. ++.++        +.|||+|+++.|.|..|.... .++....
T Consensus       101 ~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~-~~~~~~~  179 (425)
T d2hoxa1         101 ISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT-KYFDKKG  179 (425)
T ss_dssp             CCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHH-HHSCBTT
T ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHH-HHcCCCC
Confidence            3456777777765   2 1  2 457777774 8886 55555        468999999999999886443 2333222


Q ss_pred             cEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEec
Q 022194          119 VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHS  197 (301)
Q Consensus       119 ~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S  197 (301)
                      .+   +. .|.+.++++++++++++++++||||||.+..       +-.+++.+|.||+|....+. .+.....++++.|
T Consensus       180 ~~---~~-~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~~~~~~~Ivl~S  248 (425)
T d2hoxa1         180 YV---WA-GNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFT  248 (425)
T ss_dssp             EE---EE-EEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCSCBCCSEEEEE
T ss_pred             Cc---cC-CCHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchhhhcCCeEEEEe
Confidence            22   22 1678888888889999999999999998742       12358999999999654432 2334467899999


Q ss_pred             ccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccc---------------cHHHHHHHHHHHHH
Q 022194          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---------------TMALRVEKQQDNAQ  262 (301)
Q Consensus       198 ~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~~~~  262 (301)
                      +||+| |.+|+|.||++++++.+.+++.........+.+...+.++...++               .++..++.+.++..
T Consensus       249 ~SK~f-glaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~  327 (425)
T d2hoxa1         249 MSKFT-GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWV  327 (425)
T ss_dssp             HHHHT-SCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHH
T ss_pred             CHHhc-cCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 778999999999988888877776666666666655555443332               23445667777778


Q ss_pred             HHHHHHHhCCC
Q 022194          263 KIAEFLASHPR  273 (301)
Q Consensus       263 ~l~~~l~~~~~  273 (301)
                      ++.+.|++...
T Consensus       328 ~l~~~L~~~~~  338 (425)
T d2hoxa1         328 NITALLDQSDR  338 (425)
T ss_dssp             HHHHHHTTSSS
T ss_pred             HHHHHHHhcCC
Confidence            88888877653

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.83  E-value=1.6e-19  Score=159.12  Aligned_cols=215  Identities=23%  Similarity=0.211  Sum_probs=160.1

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecch-HHHHHHHH-h----ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-
Q 022194           57 RDALESLLAKLDKAD--RALCFTSG-MAALAAVT-H----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG-~~ai~~~~-~----~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-  127 (301)
                      .++.++.+++++|++  +.++++++ +++++.+. .    .+++|++|++++..|++....|....+..|.+++.++.+ 
T Consensus        68 ~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~  147 (408)
T d1t3ia_          68 YEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE  147 (408)
T ss_dssp             HHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT
T ss_pred             HHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccc
Confidence            667889999999985  55666555 56765432 2    467899999999999999888888888889999999854 


Q ss_pred             ----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccc
Q 022194          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (301)
Q Consensus       128 ----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~  202 (301)
                          +.+.+++++++++++|.+++.+|.+|...|+++|.++||++|+++++|.+++.|..+ +....++|+++.|.+|++
T Consensus       148 ~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~  227 (408)
T d1t3ia_         148 QESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMC  227 (408)
T ss_dssp             TSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT
T ss_pred             cccccHHHhhhccCCCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccccccCCceEEecccccc
Confidence                789999999999999999999999999999999999999999999999999999876 445678999999999996


Q ss_pred             cCCCCceeeEEEEcchhHHHHHHHhh---------------------hhcCCCCCHHhHHHHHcccccH-----HHHHHH
Q 022194          203 AGHSDVMAGVLAVKGERLAKELYFLQ---------------------NAEGSGLAPFDCWICLRGVKTM-----ALRVEK  256 (301)
Q Consensus       203 ~g~~g~~~g~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~  256 (301)
                       ||+|  .|+++.+++.+ .......                     .....+.+......+..+++.+     ++..++
T Consensus       228 -gp~G--~g~l~v~~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~  303 (408)
T d1t3ia_         228 -APTG--IGFLYGKEEIL-EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNY  303 (408)
T ss_dssp             -SCTT--CEEEEECHHHH-HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             -CCCC--ccccccchhhh-hcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence             7877  48888876543 2211000                     0112233433344444444432     233345


Q ss_pred             HHHHHHHHHHHHHhCCCcc
Q 022194          257 QQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~~~v~  275 (301)
                      .....+++.+.+++.+.+.
T Consensus       304 ~~~l~~~l~~~~~~~~~~~  322 (408)
T d1t3ia_         304 EVELTHYLWQGLGQIPQLR  322 (408)
T ss_dssp             HHHHHHHHHHHHHTCTTEE
T ss_pred             HHHHHhHHhhhhccCcccc
Confidence            5566677777787776653

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3e-19  Score=156.81  Aligned_cols=220  Identities=15%  Similarity=0.081  Sum_probs=148.0

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCC----Cc-eE-EecchHHHH--H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcc
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKA----DR-AL-CFTSGMAAL--A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP  115 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~----~~-~i-~~~sG~~ai--~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~  115 (301)
                      +.|.+. |.+. |+++.+++.+..+.    +. .. .+++|+.++  . .++..+.+||.|++++|.|+.+.    ..+.
T Consensus        63 ~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~----~~~~  138 (396)
T d2q7wa1          63 KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHK----SVFN  138 (396)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHH----HHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccch----HHHH
Confidence            457777 8877 88888888876653    22 22 333444343  2 44556899999999999999997    6667


Q ss_pred             cCCcEEEEecCC-------CHHHHHhh---cCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCcc
Q 022194          116 KTGVVVKRVNTC-------DLDEVASA---IGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (301)
Q Consensus       116 ~~g~~~~~~~~~-------d~~~l~~~---l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~  182 (301)
                      ..|.+++.++..       +.+.+++.   ..++++++++++|+||||.+.+   +++|+++|++|++++|+||+|....
T Consensus       139 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~  218 (396)
T d2q7wa1         139 SAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFA  218 (396)
T ss_dssp             HTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSS
T ss_pred             HcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccc
Confidence            888888888753       34444443   3467889999999999999975   7889999999999999999998665


Q ss_pred             ccCc----------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHh------hhhcCCCCCHHhHHHHHcc
Q 022194          183 LSRP----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL------QNAEGSGLAPFDCWICLRG  246 (301)
Q Consensus       183 ~~~~----------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  246 (301)
                      +...          ......+++.|++|.+ +.+|+|.|+++++...........      ........+...+.++...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  297 (396)
T d2q7wa1         219 RGLEEDAEGLRAFAAMHKELIVASSYSKNF-GLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATI  297 (396)
T ss_dssp             SCHHHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred             cCCccCchHhhhhhhhcccccccccccccc-cccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHH
Confidence            5311          1224568889999999 567899999999865432221111      1112223333333332221


Q ss_pred             ----------cccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          247 ----------VKTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       247 ----------l~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                                .+.+.+.++++.++++.+.+.|+++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  332 (396)
T d2q7wa1         298 LSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEK  332 (396)
T ss_dssp             HTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHT
T ss_pred             hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      1234455566777788888888875

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.81  E-value=1.9e-18  Score=150.42  Aligned_cols=208  Identities=15%  Similarity=0.112  Sum_probs=163.5

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhc-cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~-~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .|..+++|+.+++++|.+.+++++|||.|+. ++.++ +++||+|++++.+|....    ..+...|..++.++.+    
T Consensus        20 G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~----~~~~~~g~~pv~~Di~~~~~   95 (374)
T d1o69a_          20 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASV----APICYLKAKPVFIDCDETYN   95 (374)
T ss_dssp             THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGT----HHHHHTTCEEEEECBCTTSS
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhH----HHHhhccceeEecccccccc
Confidence            4779999999999999999999999999986 55555 789999999999998886    5556788999999875    


Q ss_pred             --CH--HHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCC--CCcEEEeccc--
Q 022194          128 --DL--DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL--GADIVMHSAT--  199 (301)
Q Consensus       128 --d~--~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~--~~di~~~S~s--  199 (301)
                        +.  +.++.....++++|++.+   ..|...++++|.++|+++|++||+|.+++.|........  -.|+.++||+  
T Consensus        96 ~~~~~~~~~~~~~~~~~~aii~~~---~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~~  172 (374)
T d1o69a_          96 IDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGN  172 (374)
T ss_dssp             BCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred             cccccccccchhcccccccccccc---cccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccCc
Confidence              12  233455667888988654   467889999999999999999999999998765432222  2489999986  


Q ss_pred             ccccCCCCceeeEEEEcchhHHHHHHHhhhhc------------C--CCCCHHhHHHHHcccccHHHHHHHHHHHHHHHH
Q 022194          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE------------G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIA  265 (301)
Q Consensus       200 K~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~  265 (301)
                      |.++...   +|+++++++.+.+++.......            |  .-++...++.....++.+.+..++..++++.+.
T Consensus       173 K~l~tge---GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y~  249 (374)
T d1o69a_         173 KIITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYK  249 (374)
T ss_dssp             SSSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccc---ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHHH
Confidence            8885543   6899999888887766554321            1  236777788888888999888888888888899


Q ss_pred             HHHHhC
Q 022194          266 EFLASH  271 (301)
Q Consensus       266 ~~l~~~  271 (301)
                      +.|.+.
T Consensus       250 ~~L~~~  255 (374)
T d1o69a_         250 EFLGEY  255 (374)
T ss_dssp             HHHTTT
T ss_pred             hhcccc
Confidence            988764

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=1.4e-18  Score=152.31  Aligned_cols=169  Identities=17%  Similarity=0.159  Sum_probs=126.2

Q ss_pred             ccccCC-CCch-HHHHHHHHHhhcCCC---ceEEecchHHH--HH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCC
Q 022194           47 YDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGMAA--LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (301)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~~~~---~~i~~~sG~~a--i~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g  118 (301)
                      ..|.+. |.+. |+++.+++.+..+..   +.+++++|+.+  +. .+..++.+||.|++++|.|..+.    ..++..|
T Consensus        63 ~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~----~~~~~~g  138 (394)
T d2ay1a_          63 KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHV----SIMNFMG  138 (394)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHH----HHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchH----HHHHHcC
Confidence            468877 8877 888888887766543   45566666533  43 44567899999999999999997    5566777


Q ss_pred             cEEEEecCC-------CHHHHHh---hcCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccC
Q 022194          119 VVVKRVNTC-------DLDEVAS---AIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR  185 (301)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~---~l~~~~~~v~i~~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~  185 (301)
                      .+++.++..       +.+.+++   ...++++++++++||||||.+.+   +++|+++|+++++++|+||+|....+..
T Consensus       139 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~  218 (394)
T d2ay1a_         139 LPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGL  218 (394)
T ss_dssp             CCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCH
T ss_pred             CEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccc
Confidence            788777753       3344433   34466788888999999999975   8889999999999999999998665542


Q ss_pred             c----------cCCCCcEEEecccccccCCCCceeeEEEEcchhH
Q 022194          186 P----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (301)
Q Consensus       186 ~----------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~  220 (301)
                      .          ......+++.|++|.+ +.+|.|.|++++.....
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~~~~  262 (394)
T d2ay1a_         219 EEDAAGTRLIASRIPEVLIAASCSKNF-GIYRERTGCLLALCADA  262 (394)
T ss_dssp             HHHHHHHHHHHHHCSSEEEEEECTTTT-TCGGGCEEEEEEECSSH
T ss_pred             cccchhhhhhhhhcccccccccccccc-cCCcccccchhhchhHH
Confidence            1          1223467888999998 45789999999886543

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.79  E-value=3.6e-18  Score=152.80  Aligned_cols=216  Identities=13%  Similarity=-0.027  Sum_probs=140.1

Q ss_pred             hHHHHHHHHHhhcCCCceEEecchHH-HH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC------
Q 022194           56 TRDALESLLAKLDKADRALCFTSGMA-AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~~~i~~~sG~~-ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~------  127 (301)
                      ...++++.+++++|+++++++++||+ ++ .++.++++|||+|++++.+|.+....+ ..+...+..+..++.+      
T Consensus        67 ~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~-~~l~~~~~~~~~~~~~~~g~~~  145 (462)
T d1c4ka2          67 PAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSA-LAMAGGRPVYLQTNRNPYGFIG  145 (462)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH-TTTTCCEEEEECEEECTTCCEE
T ss_pred             HHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHH-HHHhcCCceeeecccccccccC
Confidence            48899999999999999999999974 44 467788999999999999998876433 2233334444433322      


Q ss_pred             -------CHH---------HHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCc-----
Q 022194          128 -------DLD---------EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-----  186 (301)
Q Consensus       128 -------d~~---------~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~-----  186 (301)
                             +.+         +++.+...++..+++....|..|.+.|+++|+++|+++|+++++|++|+.+....+     
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~  225 (462)
T d1c4ka2         146 GIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNS  225 (462)
T ss_dssp             EECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGG
T ss_pred             CCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcc
Confidence                   122         23334445566566666666799999999999999999999999999986643311     


Q ss_pred             ---------cCCCCcEEEecccccccCCCCceeeEEEEcchhH--------HHHHHHhhhhcC-CCCCHHhHHHHHcc--
Q 022194          187 ---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL--------AKELYFLQNAEG-SGLAPFDCWICLRG--  246 (301)
Q Consensus       187 ---------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~--  246 (301)
                               ...++|+++.|+||+++++.+  ++++..++..+        ............ .+.+......+..+  
T Consensus       226 ~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~--g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~  303 (462)
T d1c4ka2         226 SPLLIDDLGPEDPGIIVVQSVHKQQAGFSQ--TSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAA  303 (462)
T ss_dssp             CTTSCCCCCTTSCEEEEEECHHHHSSCCTT--CEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred             hhhccccccccCCccEEEEecCcccccccc--eEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHH
Confidence                     123459999999999966543  45555554322        111222222222 22222222211111  


Q ss_pred             -c--ccHHHHHHHHHHHHHHHHHHHHhCCCc
Q 022194          247 -V--KTMALRVEKQQDNAQKIAEFLASHPRV  274 (301)
Q Consensus       247 -l--~~~~~~~~~~~~~~~~l~~~l~~~~~v  274 (301)
                       +  ....+..++..++++++++.+++....
T Consensus       304 ~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~  334 (462)
T d1c4ka2         304 MQEGEAGRKLWHDLLITTIEARKKLIKAGSM  334 (462)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             1  123455677888899999999886554

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.79  E-value=6.5e-18  Score=146.85  Aligned_cols=212  Identities=15%  Similarity=0.141  Sum_probs=169.0

Q ss_pred             CchHHHHHHHHHhhcCCCceEEecchHHHHHHHHhc--cCCC--CeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL--LGTG--EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~~--~~~g--~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .+..+++|+.+++++|.+.+++++|||.|+.+++..  +++|  ++|+++..+|.+..    ..+...|.++++++.+  
T Consensus        30 G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~----~ai~~~G~~pv~vDi~~~  105 (371)
T d2fnua1          30 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATA----NMLLESGYTPVFAGIKND  105 (371)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHH----HHHHHTTCEEEECCBCTT
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccc----eeeeccCccccccccccc
Confidence            367999999999999999999999999998755444  3334  58999999998886    5556789999999965  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCC--CCcEEEecc--cc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL--GADIVMHSA--TK  200 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~--~~di~~~S~--sK  200 (301)
                         +.+++++++.+++++|++.   +..|...++++|.++|+++|+++|+|.+++.|........  .-|+.+.||  +|
T Consensus       106 ~~~~~~~~~~~~~~~t~avi~v---h~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K  182 (371)
T d2fnua1         106 GNIDELALEKLINERTKAIVSV---DYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIK  182 (371)
T ss_dssp             SSBCGGGSGGGCCTTEEEEEEE---CGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTS
T ss_pred             ccccchhhhhhccchhhccccc---cccccccccccccccccccchhhccchhhccCceeccccCCcccccccccccccc
Confidence               5677888888999999866   3568899999999999999999999999998875433322  247778886  68


Q ss_pred             cccCCCCceeeEEEEcchhHHHHHHHhhhh----------------cCCCCCHHhHHHHHcccccHHHHHHHHHHHHHHH
Q 022194          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNA----------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKI  264 (301)
Q Consensus       201 ~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (301)
                      .+.+..   +|+++++++.+.+++......                ...-++...++..+..++.+.+..++..++++.+
T Consensus       183 ~l~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~y  259 (371)
T d2fnua1         183 PITTAE---GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTY  259 (371)
T ss_dssp             SSCCSS---CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             cccccc---ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhhhh
Confidence            886543   699999998888877665432                1133677778888888999998889989999999


Q ss_pred             HHHHHhCCCcc
Q 022194          265 AEFLASHPRVK  275 (301)
Q Consensus       265 ~~~l~~~~~v~  275 (301)
                      .+.|.+.+.+.
T Consensus       260 ~~~l~~~~~~~  270 (371)
T d2fnua1         260 DRIFKDNPYFT  270 (371)
T ss_dssp             HHHHTTCSSEE
T ss_pred             ccccccccccc
Confidence            99998877654

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.77  E-value=2.4e-18  Score=152.73  Aligned_cols=206  Identities=13%  Similarity=0.115  Sum_probs=144.2

Q ss_pred             HHHHHHhhcCCCc-eEEecchH-HHHHHH-Hhc--cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC--------
Q 022194           60 LESLLAKLDKADR-ALCFTSGM-AALAAV-THL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------  126 (301)
Q Consensus        60 l~~~l~~~~~~~~-~i~~~sG~-~ai~~~-~~~--~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~--------  126 (301)
                      +..++.+.+|.+. ..++.+|+ +++.++ ++.  ..++++|+++...|.++.    +.+...|...+.++.        
T Consensus       118 ~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~----k~~~~~g~~~~~v~~~~~~~~~~  193 (434)
T d2z67a1         118 ILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI----KAVSFVGMNMRLVETVLDGDRVY  193 (434)
T ss_dssp             HHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEETTEEE
T ss_pred             HHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHH----HHHHHhCCcceEEEeecCCCccC
Confidence            3355667788764 44444554 444333 322  347899999999998886    445566777777653        


Q ss_pred             CCHHHHHhhcC-----CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccc------cCccCCCCcEEE
Q 022194          127 CDLDEVASAIG-----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL------SRPLELGADIVM  195 (301)
Q Consensus       127 ~d~~~l~~~l~-----~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~------~~~~~~~~di~~  195 (301)
                      .|+++++++++     +++.+|++++|+++.|.+.|+++|+++|++||+++++|++|+.+..      ..+...++|+++
T Consensus       194 ~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~  273 (434)
T d2z67a1         194 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVV  273 (434)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEE
T ss_pred             CCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEE
Confidence            28999999986     3678899999999999999999999999999999999999986542      134567899999


Q ss_pred             ecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcc--cccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       196 ~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +|+||++++|.|  +|++..+++.+.+++...........+....++.+..  .+.+.+..++..++++++.+.|+++
T Consensus       274 ~s~hK~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l  349 (434)
T d2z67a1         274 SSSDKNLLTPIG--GGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDL  349 (434)
T ss_dssp             EEHHHHHCCCSS--CEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcCccccccCCC--ccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh
Confidence            999999988876  4777778777766554433333333233333333222  2334566677777888888877763

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.4e-17  Score=144.92  Aligned_cols=158  Identities=16%  Similarity=0.153  Sum_probs=128.0

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHHHHH-----hccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALAAVT-----HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~~~~-----~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      .++.++.+++++|++  +.++++++|+++..+.     ....+|+.|++....|+.+...+ ..++..|+++++++.+  
T Consensus        46 ~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~g~~v~~vp~~~~  124 (376)
T d1eg5a_          46 MEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETM-KYLSMKGFKVKYVPVDSR  124 (376)
T ss_dssp             HHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHH-HHHHHTTCEEEECCBCTT
T ss_pred             HHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHH-HHHHhcCCEEEEEcCCCC
Confidence            567788999999987  5566666678876443     34677888888777777666555 5567779999999854  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCcccc-CccCCCCcEEEeccccc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~--~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~  201 (301)
                         |++++++++++++++|++++++|+||...|++++.++++.+  ++++++|.+++.+... +....++|++++|++||
T Consensus       125 ~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~  204 (376)
T d1eg5a_         125 GVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKF  204 (376)
T ss_dssp             SCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGG
T ss_pred             CeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccCccceeccccee
Confidence               79999999999999999999999999999999999998665  8999999999998875 45567899999999999


Q ss_pred             ccCCCCceeeEEEEcch
Q 022194          202 IAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       202 ~~g~~g~~~g~~~~~~~  218 (301)
                      + ||+|.  |+++.+++
T Consensus       205 ~-gp~G~--~~l~~~~~  218 (376)
T d1eg5a_         205 H-GPKGV--GITYIRKG  218 (376)
T ss_dssp             T-SCTTC--EEEEECTT
T ss_pred             e-cCCCc--eeEEeccC
Confidence            7 78875  66666544

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=1.7e-16  Score=137.03  Aligned_cols=162  Identities=14%  Similarity=0.117  Sum_probs=118.9

Q ss_pred             chHHHHHHHHHhhcCCCc---eEE-ecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--
Q 022194           55 PTRDALESLLAKLDKADR---ALC-FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (301)
Q Consensus        55 ~~~~~l~~~l~~~~~~~~---~i~-~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--  127 (301)
                      ...+++++.+++++|+++   .++ .+|||.++. ++..+..+++.+++....++....................+..  
T Consensus        33 ~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (361)
T d1m32a_          33 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR  112 (361)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccccccccccCC
Confidence            347899999999999862   244 456789886 5667778877777666554433222111111222222222222  


Q ss_pred             ---CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEeccccccc
Q 022194          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (301)
Q Consensus       128 ---d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (301)
                         +.+.......++++++.+++.+|.||...|+++|+++||++|+++++|.+++.|..+ +....++|++++|.+|+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~  192 (361)
T d1m32a_         113 PDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQ  192 (361)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred             ccchhhHHHHHhccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccceEEeeeccccc
Confidence               233444556689999999999999999999999999999999999999999998875 5667799999999999999


Q ss_pred             CCCCceeeEEEEcch
Q 022194          204 GHSDVMAGVLAVKGE  218 (301)
Q Consensus       204 g~~g~~~g~~~~~~~  218 (301)
                      ||+|  .|+++.+++
T Consensus       193 gp~G--~g~l~~~~~  205 (361)
T d1m32a_         193 GVPG--FAFVIAREQ  205 (361)
T ss_dssp             CCSS--EEEEEEEHH
T ss_pred             CCCC--ceEEEechh
Confidence            9988  488888754

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=9.6e-18  Score=149.23  Aligned_cols=206  Identities=11%  Similarity=0.028  Sum_probs=142.7

Q ss_pred             HHHHHHHhhcCCC---ceEEecchHH-HHHHH-Hh---ccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC----
Q 022194           59 ALESLLAKLDKAD---RALCFTSGMA-ALAAV-TH---LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----  126 (301)
Q Consensus        59 ~l~~~l~~~~~~~---~~i~~~sG~~-ai~~~-~~---~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~----  126 (301)
                      ++.+++++++|.+   ..+++++|++ ++.++ .+   ...+++.|+++...|.++.    ..+...|...+.++.    
T Consensus        98 ~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~----~a~~~~g~~~~~v~~~~~~  173 (445)
T d3bc8a1          98 SLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF----KSMVTAGFEPVVIENVLEG  173 (445)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEET
T ss_pred             HHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHH----HHHHHcCCeeEEEEeeccC
Confidence            4556777888865   4566666663 33322 22   2456789999999998886    555677888777763    


Q ss_pred             ----CCHHHHHhhcC----CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccC------cc-CCCC
Q 022194          127 ----CDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR------PL-ELGA  191 (301)
Q Consensus       127 ----~d~~~l~~~l~----~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~------~~-~~~~  191 (301)
                          .|+++++++++    +++.+|+++.|++++|.+.|+++|+++|++||+++++|++++.+....      .. -.++
T Consensus       174 ~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~v  253 (445)
T d3bc8a1         174 DELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRI  253 (445)
T ss_dssp             TEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCC
T ss_pred             cccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCc
Confidence                18899988885    468899999999999999999999999999999999999998765321      11 1258


Q ss_pred             cEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHccc--ccHHHHHHHHHHHHHHHHHHHH
Q 022194          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       192 di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~  269 (301)
                      |+++.|.||++++|.|  +|+++.++..+.+.+.......+........++.+..+  +.+.+..++..++++++.+.|+
T Consensus       254 d~~~~s~hK~~~~p~g--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~  331 (445)
T d3bc8a1         254 DAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLK  331 (445)
T ss_dssp             CEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEecCccccccCCC--CceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Confidence            9999999999988766  57888887777665544433333333333344433322  2234555566666666666665


Q ss_pred             h
Q 022194          270 S  270 (301)
Q Consensus       270 ~  270 (301)
                      +
T Consensus       332 ~  332 (445)
T d3bc8a1         332 K  332 (445)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.75  E-value=1.6e-17  Score=147.65  Aligned_cols=211  Identities=17%  Similarity=0.118  Sum_probs=145.2

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-----
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----  126 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-----  126 (301)
                      |+|+..+|++.+++++|.+.+++++||+.|.. ++..++++||+|+.... +..+.    ......|.....+..     
T Consensus        73 ~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~~----~~i~~~g~~~~~~~~~~~~~  147 (456)
T d1c7ga_          73 GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTTR----FHQEKNGATFVDIVRDEAHD  147 (456)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHHH----HHHHHTTEEEEECBCGGGGC
T ss_pred             CCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHHH----HHHHHcCceeeecccccccc
Confidence            67889999999999999999999999998874 77778999998886543 33332    222334444443321     


Q ss_pred             ----------CCHHHHHhhcC----CCceEEEEeCCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcCCccc-----
Q 022194          127 ----------CDLDEVASAIG----PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMSPVL-----  183 (301)
Q Consensus       127 ----------~d~~~l~~~l~----~~~~~v~i~~~~np~G~~~----~l~~l~~l~~~~~~~li~D~~~~~~~~-----  183 (301)
                                .|++++++.++    ..+.++++++++|+.|...    ++++|.++|++||+.+++|+++..+..     
T Consensus       148 ~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~  227 (456)
T d1c7ga_         148 ASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKE  227 (456)
T ss_dssp             TTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHH
T ss_pred             ccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcc
Confidence                      17889998886    3456889999999876542    588899999999999999999754311     


Q ss_pred             -----cC-cc-------CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcC-----CCCCHHhHHHHHc
Q 022194          184 -----SR-PL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-----SGLAPFDCWICLR  245 (301)
Q Consensus       184 -----~~-~~-------~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  245 (301)
                           .. ..       -..+|++++|++|.++++   .+|+++++++.+.++.+......+     ...+.....++..
T Consensus       228 ~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~---~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~  304 (456)
T d1c7ga_         228 QEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVN---IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAI  304 (456)
T ss_dssp             HSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS---SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHH
T ss_pred             cccccCCCChhhhccccccccccEEEecccccccc---ceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHH
Confidence                 00 00       123789999999999765   368999998888776655443222     2233333333322


Q ss_pred             ccccH--HHHHHHHHHHHHHHHHHHHhC
Q 022194          246 GVKTM--ALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       246 ~l~~~--~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ++...  .+..++..+++++|.+.|++.
T Consensus       305 ~l~e~~~~~~l~~r~~~~~~L~e~L~~~  332 (456)
T d1c7ga_         305 GLREAMQYEYIEHRVKQVRYLGDKLREA  332 (456)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            22221  234455667778898988875

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.8e-17  Score=142.68  Aligned_cols=159  Identities=18%  Similarity=0.253  Sum_probs=123.2

Q ss_pred             HHHHHHHHHhhcCCCc--eEEe-cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC-----
Q 022194           57 RDALESLLAKLDKADR--ALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~--~i~~-~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (301)
                      .+++++.|++++|.++  .+++ +|||+++. ++..++.+|+++++....+.+....  ......+..+..+..+     
T Consensus        54 ~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  131 (388)
T d1h0ca_          54 MDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAV--DIGERIGARVHPMTKDPGGHY  131 (388)
T ss_dssp             HHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHH--HHHHHHC--CBCCBCCTTCCC
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeec--cccccccccccccccCCcccc
Confidence            7889999999999862  4555 55688885 7778899999999988877766433  2233333344334432     


Q ss_pred             CHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccCC
Q 022194          128 DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGH  205 (301)
Q Consensus       128 d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g~  205 (301)
                      |.+++++.+. .++++|++++.+|.+|.+.|+++|.++|+++|+++++|.+++.+... +....++|++++|.+|+++||
T Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp  211 (388)
T d1h0ca_         132 TLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAP  211 (388)
T ss_dssp             CHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCC
T ss_pred             chHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccccccccceecccccccccCC
Confidence            5666655554 58899999999999999999999999999999999999999988765 556779999999999999888


Q ss_pred             CCceeeEEEEcchh
Q 022194          206 SDVMAGVLAVKGER  219 (301)
Q Consensus       206 ~g~~~g~~~~~~~~  219 (301)
                      +|  +|+++.+++.
T Consensus       212 ~g--~~~~~~~~~~  223 (388)
T d1h0ca_         212 PG--TSLISFSDKA  223 (388)
T ss_dssp             TT--CEEEEECHHH
T ss_pred             Cc--eEEEeecHHH
Confidence            87  4777776543

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=4.4e-16  Score=135.58  Aligned_cols=212  Identities=11%  Similarity=0.058  Sum_probs=145.6

Q ss_pred             HHHHHHHHHhhcCC----C-c-eEEecchHHHHH-HHHhcc---CCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           57 RDALESLLAKLDKA----D-R-ALCFTSGMAALA-AVTHLL---GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~----~-~-~i~~~sG~~ai~-~~~~~~---~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      .+++.+.++++++.    + + .++++|||++++ ++..++   ++||+|++....+++..  +...++..+..+..+..
T Consensus        38 ~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~--~~~~~~~~~~~~~~~~~  115 (382)
T d2bkwa1          38 FQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDR--FADCLRSYGAQVDVVRP  115 (382)
T ss_dssp             HHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHH--HHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhh--hhhhccccccccccccc
Confidence            45666677777653    2 3 445567789986 555554   67999999887766553  23445556666665543


Q ss_pred             C------CHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCcccc-CccCCCCcEEEe
Q 022194          127 C------DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMH  196 (301)
Q Consensus       127 ~------d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~--~~~li~D~~~~~~~~~-~~~~~~~di~~~  196 (301)
                      .      +.+.+++.+. .+++++++++.+|.||...|++++.+.|+++  ++++++|.+++.|..+ +..+.++|+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~  195 (382)
T d2bkwa1         116 LKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALT  195 (382)
T ss_dssp             SSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEE
T ss_pred             cCCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccCeeEEee
Confidence            2      5677766654 6789999999999999999999999998876  4999999999999876 556779999999


Q ss_pred             cccccccCCCCceeeEEEEcchhHHHHHH-------------------Hh---h---hhcCCCCCHHhHHHHHcccccH-
Q 022194          197 SATKFIAGHSDVMAGVLAVKGERLAKELY-------------------FL---Q---NAEGSGLAPFDCWICLRGVKTM-  250 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~~~~~~~~-------------------~~---~---~~~~~~~~~~~~~~~~~~l~~~-  250 (301)
                      |.+|+++||+|+  |+++.+++.+.+...                   ..   .   .....+.+....+++..+++.+ 
T Consensus       196 s~~K~l~gP~G~--g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~  273 (382)
T d2bkwa1         196 ASQKAIGAPAGL--SISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEIL  273 (382)
T ss_dssp             ESSSTTCCCSCE--EEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             cccccCcCCCch--hhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHH
Confidence            999999999984  888888654322100                   00   0   0112344444555555556543 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHhCC
Q 022194          251 ----ALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       251 ----~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                          ..+.++..+.++++++.+.+..
T Consensus       274 ~~g~~~~~~~~~~l~~~l~~~l~~~~  299 (382)
T d2bkwa1         274 EEGLHKRWDLHREMSDWFKDSLVNGL  299 (382)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HhhhhhhHHHHHHHHHHHHHHhhhcc
Confidence                3344555666777777776543

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=3.2e-16  Score=136.38  Aligned_cols=264  Identities=16%  Similarity=0.122  Sum_probs=168.8

Q ss_pred             ceeeecCC--CCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEecchHHHHHHH
Q 022194           11 TLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~--~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~~~   86 (301)
                      .+++||.+  .+..+|..++.+..+.. .+.+  . ..+.......+...++.+.+.+.....  .+.+++||++|+...
T Consensus        37 ~~ylD~~~g~~~~~lGh~hp~v~~a~~-~~~~--~-~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~A  112 (387)
T d1vefa1          37 NEYIDCVGGYGVANLGHGNPEVVEAVK-RQAE--T-LMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAA  112 (387)
T ss_dssp             CEEEESSHHHHTCTTCBTCHHHHHHHH-HHHH--H-CCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHH
T ss_pred             CEEEEcchhHHhhhhcCCcHHHHHHHH-HHHH--h-hcccccccCCchHHHHHHHhhhhccccceeeccccCchHHHHHH
Confidence            46888853  34458885555444332 2211  1 111111124455777777777766444  577889999998644


Q ss_pred             Hhc---cCCCCeEEEcCCCCccHHHHHh---------hhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCCccc
Q 022194           87 THL---LGTGEEIVAGDDLYGGTDRLLS---------RVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (301)
Q Consensus        87 ~~~---~~~g~~Vlv~~~~y~~~~~~~~---------~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np~G~  154 (301)
                      +++   .....+|+.....||+......         .........+..++.+|.+.+++.+++++.+|+++......|.
T Consensus       113 ik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~~iAavi~EPi~g~~G~  192 (387)
T d1vefa1         113 LKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGV  192 (387)
T ss_dssp             HHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTS
T ss_pred             HHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEECCCCCCCC
Confidence            333   3456789999999988643221         1112222356677888999999999999999999987777777


Q ss_pred             ccc----HHHHHHHHHHcCCEEEEeCCcCCc-ccc---CccCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHH
Q 022194          155 ICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (301)
Q Consensus       155 ~~~----l~~l~~l~~~~~~~li~D~~~~~~-~~~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~  226 (301)
                      ..+    +++|.++|++||+++|+||+++.. ..+   .....+....+.+++|.++|.  +..+.++...+ ..+....
T Consensus       193 ~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~gK~l~gG--~~~~~~~~~~~-~~~~~~~  269 (387)
T d1vefa1         193 RPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG--VPLGVAVMREE-VARSMPK  269 (387)
T ss_dssp             EECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT--SSCEEEEEEHH-HHHTSCT
T ss_pred             ccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeecccCCCC--cccccccccee-eeecccc
Confidence            754    999999999999999999998632 222   222234433444499999653  44566666643 4343333


Q ss_pred             hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHhC--CCcceEecCC
Q 022194          227 LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH--PRVKKVNYAG  281 (301)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~--~~v~~v~~p~  281 (301)
                      ..+..+...+|..++++...++.+.  +..++..+..+++.+.|+++  +.|..++.-|
T Consensus       270 ~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~G  328 (387)
T d1vefa1         270 GGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVRGMG  328 (387)
T ss_dssp             TSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEET
T ss_pred             CCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHhcCCCceEEEeecc
Confidence            3344455668888888888888763  34466677777888888764  4555565544

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.67  E-value=1.9e-16  Score=138.94  Aligned_cols=163  Identities=16%  Similarity=0.136  Sum_probs=125.0

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEecchHHHHHHHHh-------ccCCCCeEEEcCCCCccHHHHHhh-hcccCCcEEEEec
Q 022194           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAVTH-------LLGTGEEIVAGDDLYGGTDRLLSR-VTPKTGVVVKRVN  125 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~~~~~-------~~~~g~~Vlv~~~~y~~~~~~~~~-~~~~~g~~~~~~~  125 (301)
                      ..+++++.+++++|++  +.+++.++|+++..+..       ...+++.|++.+..|++....+.. ..+.....+....
T Consensus        71 ~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (404)
T d1qz9a_          71 LSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRL  150 (404)
T ss_dssp             HHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceeccc
Confidence            3778999999999986  67777777888753321       246788899888887776544322 2222222333333


Q ss_pred             CCCHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccC
Q 022194          126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       126 ~~d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (301)
                      ..+.+.+++++++++++|.+++.+|.||...|+++|+++|+++|+++++|.+++.+... +....++|+++.|.+|++.+
T Consensus       151 ~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~  230 (404)
T d1qz9a_         151 VDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNG  230 (404)
T ss_dssp             ESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCC
T ss_pred             cccchhHHHhcCCCceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccccceEEEEechhhccc
Confidence            34788999999999999999999999999999999999999999999999999998876 34456899999999999877


Q ss_pred             CCCceeeEEEEcchh
Q 022194          205 HSDVMAGVLAVKGER  219 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~  219 (301)
                      |+|. +|+++.+++.
T Consensus       231 ~~g~-~g~~~~~~~~  244 (404)
T d1qz9a_         231 GPGS-QAFVWVSPQL  244 (404)
T ss_dssp             CTTC-CCEEEECTTT
T ss_pred             CCce-EEEEEechhh
Confidence            6653 5777776543

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=1.2e-15  Score=130.83  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=124.6

Q ss_pred             HHHHHHHHHhhcCCC-ceEE-ecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC--CHHH
Q 022194           57 RDALESLLAKLDKAD-RALC-FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--DLDE  131 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~-~~i~-~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~--d~~~  131 (301)
                      .++.++.++++++.+ +.++ .+|||.++. ++..++++|++|++....+.+.  -+...++..+..+..+...  +...
T Consensus        35 ~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~--~~~~~a~~~~~~~~~~~~~~g~~~~  112 (348)
T d1iuga_          35 FLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSE--RFYEIALEAGLVVERLDYPYGDTPR  112 (348)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHH--HHHHHHHHTTCEEEEEECCTTCCCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHH--HHHHHHHhcCcccccccccCCCccc
Confidence            678888899999876 4444 466688885 6677899999999887665443  3446777788777777654  2222


Q ss_pred             HHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcC--CEEEEeCCcCCcccc-CccCCCCcEEEecccccccCCCCc
Q 022194          132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDV  208 (301)
Q Consensus       132 l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~--~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g~~g~  208 (301)
                      .+.....+++.|++++..+.+|...|+++|.++|++++  .++++|.+.+.+..+ +....++|++++|.+|+++||+|+
T Consensus       113 ~~~~~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~  192 (348)
T d1iuga_         113 PEDVAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGL  192 (348)
T ss_dssp             TTTSCCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCE
T ss_pred             cccccccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecCCce
Confidence            33344578899999999999999999999999999885  799999999988764 555678999999999999999995


Q ss_pred             eeeEEEEcchhH
Q 022194          209 MAGVLAVKGERL  220 (301)
Q Consensus       209 ~~g~~~~~~~~~  220 (301)
                        |+++.+++.+
T Consensus       193 --~~v~~s~~~l  202 (348)
T d1iuga_         193 --GFVALSPRAL  202 (348)
T ss_dssp             --EEEEECHHHH
T ss_pred             --eeeeechHHH
Confidence              8888886543

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.67  E-value=1.1e-15  Score=130.16  Aligned_cols=212  Identities=21%  Similarity=0.193  Sum_probs=146.2

Q ss_pred             CCchHHHHH----HHHHhhcCCCceE-EecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHHh-hhcccCCcEEEEec
Q 022194           53 GNPTRDALE----SLLAKLDKADRAL-CFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVN  125 (301)
Q Consensus        53 g~~~~~~l~----~~l~~~~~~~~~i-~~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~-~~~~~~g~~~~~~~  125 (301)
                      |....++++    ++.+++|+++.+- =..||+.|. .++.++++|||+|+..++..+++...-. ........++...+
T Consensus        63 G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~  142 (405)
T d1kl1a_          63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYG  142 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEEC
T ss_pred             CchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEec
Confidence            555566655    5567889998433 357888665 6888999999999998887766642110 00011123444443


Q ss_pred             CC------CHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CccccCccCCCCcE
Q 022194          126 TC------DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADI  193 (301)
Q Consensus       126 ~~------d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~-----~~~~~~~~~~~~di  193 (301)
                      .+      |.|++++.++ .++++|++....+|  ...|++++.++|++.|+++++|.+|.     .+.+++|++. +|+
T Consensus       143 ~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~-aDv  219 (405)
T d1kl1a_         143 VDPETHVIDYDDVREKARLHRPKLIVAAASAYP--RIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY-AHF  219 (405)
T ss_dssp             BCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-CSE
T ss_pred             cchhcccccHHHHHHHHHhhCcceEEecccccc--cccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh-hhh
Confidence            32      8899988876 58999998877765  46789999999999999999999996     4567788865 899


Q ss_pred             EEecccccccCCCCceeeEEEEcchhHHHHHHHhhhhcC-CCCCHHhHHH----HHccc-ccHHHHHHHHHHHHHHHHHH
Q 022194          194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWI----CLRGV-KTMALRVEKQQDNAQKIAEF  267 (301)
Q Consensus       194 ~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~l-~~~~~~~~~~~~~~~~l~~~  267 (301)
                      +++|.||+|.||   ++|++++++ .+.+++........ .+......++    +.+.+ ..+.++.++..+|++.|.+.
T Consensus       220 vt~tThKtlrGP---rgg~I~~~~-~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~  295 (405)
T d1kl1a_         220 VTTTTHKTLRGP---RGGMILCQE-QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASA  295 (405)
T ss_dssp             EEEESSSTTCCC---SCEEEEECH-HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccccccCC---CCceEEecc-hhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            999999999988   569998874 45554433222111 1111111111    22222 34678889999999999999


Q ss_pred             HHhC
Q 022194          268 LASH  271 (301)
Q Consensus       268 l~~~  271 (301)
                      |.+.
T Consensus       296 L~~~  299 (405)
T d1kl1a_         296 LQNE  299 (405)
T ss_dssp             HHHT
T ss_pred             HhcC
Confidence            9985

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=6.3e-15  Score=126.12  Aligned_cols=212  Identities=22%  Similarity=0.202  Sum_probs=146.8

Q ss_pred             CCchHHHHH----HHHHhhcCCCceE-EecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccC--CcEEEEe
Q 022194           53 GNPTRDALE----SLLAKLDKADRAL-CFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT--GVVVKRV  124 (301)
Q Consensus        53 g~~~~~~l~----~~l~~~~~~~~~i-~~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~--g~~~~~~  124 (301)
                      |....++++    ++..++|+++.+- -..||+.|. .++.++++|||+|+..+..+.++...- ......  ..+....
T Consensus        66 G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg-~~~~~~g~~~~~~~y  144 (416)
T d1dfoa_          66 GCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-SPVNFSGKLYNIVPY  144 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGT-CTTSHHHHHSEEEEE
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhcCCCCeeeecccccccccccc-ccccccCceEEEEec
Confidence            444455554    5566789998543 468898776 688899999999999999887775221 001111  1233333


Q ss_pred             cC-----CCHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCC-----ccccCccCCCCcE
Q 022194          125 NT-----CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-----PVLSRPLELGADI  193 (301)
Q Consensus       125 ~~-----~d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~-----~~~~~~~~~~~di  193 (301)
                      ..     .|.|++++..+ .++++|++....+|  ...|++++.++|++.|+++++|.+|..     +.+++|... +|+
T Consensus       145 ~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDv  221 (416)
T d1dfoa_         145 GIDATGHIDYADLEKQAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHV  221 (416)
T ss_dssp             CBCSSSSBCHHHHHHHHHHHCCSEEEEECSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSE
T ss_pred             ccCCccCccHHHHHHHHHHhccceEEecccccc--cccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-cce
Confidence            32     28889887776 58999998866665  578999999999999999999999964     466788876 699


Q ss_pred             EEecccccccCCCCceeeEEEEcc--hhHHHHHHHhhhh--cCCCCCHHh---HHHHHccc-ccHHHHHHHHHHHHHHHH
Q 022194          194 VMHSATKFIAGHSDVMAGVLAVKG--ERLAKELYFLQNA--EGSGLAPFD---CWICLRGV-KTMALRVEKQQDNAQKIA  265 (301)
Q Consensus       194 ~~~S~sK~~~g~~g~~~g~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~l-~~~~~~~~~~~~~~~~l~  265 (301)
                      +++|+||+|.||   ++|+++++.  +.+.+++......  .++......   +.++.+++ ..+.++.++..+|++.|.
T Consensus       222 vt~tThKtlrGP---rggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La  298 (416)
T d1dfoa_         222 VTTTTHKTLAGP---RGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMV  298 (416)
T ss_dssp             EEEESSSTTCCC---SCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             eeeehhhcccCC---CceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            999999999988   569999873  4555544332221  121211111   11223333 346788899999999999


Q ss_pred             HHHHhC
Q 022194          266 EFLASH  271 (301)
Q Consensus       266 ~~l~~~  271 (301)
                      +.|.+.
T Consensus       299 ~~L~~~  304 (416)
T d1dfoa_         299 EVFLER  304 (416)
T ss_dssp             HHHHHT
T ss_pred             HHHHhC
Confidence            999986

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.66  E-value=8.4e-16  Score=136.94  Aligned_cols=221  Identities=16%  Similarity=0.168  Sum_probs=152.5

Q ss_pred             HHHHHHHHHhhcCCCc-----------eEEecchHHHH-HHHHhc----cC------CC---------CeEEEcCCCCcc
Q 022194           57 RDALESLLAKLDKADR-----------ALCFTSGMAAL-AAVTHL----LG------TG---------EEIVAGDDLYGG  105 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~-----------~i~~~sG~~ai-~~~~~~----~~------~g---------~~Vlv~~~~y~~  105 (301)
                      ..++.+++++++|.++           .+++++||.++ .++...    ++      +|         -.|++++-.|++
T Consensus       115 E~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~S  194 (476)
T d1js3a_         115 ETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS  194 (476)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH
T ss_pred             HHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHH
Confidence            4556788999988752           47888888665 333221    11      11         147788888888


Q ss_pred             HHHHHhhhcccCCcEEEEecCC-----CHHHHHhhcCC------CceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEE
Q 022194          106 TDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV  174 (301)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~------~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~  174 (301)
                      +.    +.+...|+.++.++.+     |+++|++.+++      .+.+|+.+..++.+|.+.|+++|+++|++||+|+++
T Consensus       195 i~----ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHV  270 (476)
T d1js3a_         195 VE----RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHV  270 (476)
T ss_dssp             HH----HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred             HH----HHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEE
Confidence            86    5556677778778765     78999888862      356778889999999999999999999999999999


Q ss_pred             eCCcCCccccCccC-------CCCcEEEecccccccCCCCceeeEEEEcchhHHHHH--------HHhhhhc--------
Q 022194          175 DNSIMSPVLSRPLE-------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL--------YFLQNAE--------  231 (301)
Q Consensus       175 D~~~~~~~~~~~~~-------~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~--------~~~~~~~--------  231 (301)
                      |.+|+.........       ..+|.+..++||+++.|.+  +|+++.+++......        .......        
T Consensus       271 DAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~--~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (476)
T d1js3a_         271 DAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD--CSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRH  348 (476)
T ss_dssp             ECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESCHHHHHGGGC------------CCSCCCGGG
T ss_pred             ecccchhhhhhcchhhhhcCCcccceeeecCccccccCCc--ceeecccchHHHHHHHhcChhhhccccccccccccccc
Confidence            99998765432211       2479999999999987765  588877765432211        0000000        


Q ss_pred             -----CCCCCHHhHHHHHcc--cccHHHHHHHHHHHHHHHHHHHHhCCCcceEecCCCC
Q 022194          232 -----GSGLAPFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  283 (301)
Q Consensus       232 -----~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v~~p~~~  283 (301)
                           +........|+.++.  .+.+.+.+++..+.++++.+.|++++.++.+..|.+.
T Consensus       349 ~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~  407 (476)
T d1js3a_         349 WQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLG  407 (476)
T ss_dssp             SSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSS
T ss_pred             cccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceE
Confidence                 011123334444443  3447788899999999999999999887666566554

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.2e-15  Score=135.20  Aligned_cols=215  Identities=10%  Similarity=-0.057  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhhcCCCc-------eEEecchHHHHH-HHHhcc------------CCCCeEEEcCCCCccHHHHHhhhccc
Q 022194           57 RDALESLLAKLDKADR-------ALCFTSGMAALA-AVTHLL------------GTGEEIVAGDDLYGGTDRLLSRVTPK  116 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~-------~i~~~sG~~ai~-~~~~~~------------~~g~~Vlv~~~~y~~~~~~~~~~~~~  116 (301)
                      ..++.+++++++|.++       ..++++||+|+. ++.+.-            .....++++...|.++    .+.++.
T Consensus        95 E~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~----~Kaa~~  170 (450)
T d1pmma_          95 DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICW----HKFARY  170 (450)
T ss_dssp             HHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHH----HHHHHH
T ss_pred             HHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHH----HHHHHH
Confidence            4556678999998642       578888898864 443321            1123467777676655    478888


Q ss_pred             CCcEEEEecCC------CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH------HHcCCEEEEeCCcCCcccc
Q 022194          117 TGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA------HAHGALLLVDNSIMSPVLS  184 (301)
Q Consensus       117 ~g~~~~~~~~~------d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~------~~~~~~li~D~~~~~~~~~  184 (301)
                      .|++++.++.+      |++++++++++++.+|+.+.+++.||.+.|+++|.+++      +++|+|+++|.+++.+...
T Consensus       171 ~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p  250 (450)
T d1pmma_         171 WDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAP  250 (450)
T ss_dssp             TTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH
T ss_pred             cCCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceee
Confidence            99999998864      89999999999999999999999999999998887775      5689999999999866431


Q ss_pred             --Cc------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh------hh--cC--CCCC-H--HhHHHH
Q 022194          185 --RP------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ------NA--EG--SGLA-P--FDCWIC  243 (301)
Q Consensus       185 --~~------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~------~~--~~--~~~~-~--~~~~~~  243 (301)
                        .+      ...++|.+..|.||++.+|.|  .|+++.+++..........      ..  .+  .+-. .  ...++.
T Consensus       251 ~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~  328 (450)
T d1pmma_         251 FVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYE  328 (450)
T ss_dssp             HHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHH
T ss_pred             eechhhhhhhcccceeEeecChhhccCCCCC--eeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHH
Confidence              11      123689999999999988877  4888888765422111110      00  01  1111 1  123333


Q ss_pred             Hc--ccccHHHHHHHHHHHHHHHHHHHHhCCCcceE
Q 022194          244 LR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKV  277 (301)
Q Consensus       244 ~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v  277 (301)
                      +.  +.+.+.+..++..++++++.+.|++.+.+..+
T Consensus       329 l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~  364 (450)
T d1pmma_         329 FLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI  364 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            32  23346778889999999999999998876544

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-15  Score=132.20  Aligned_cols=263  Identities=14%  Similarity=0.083  Sum_probs=166.1

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      .++|||.++  +..+|..++.+..+.. .+.+  + ..+....+..+...++++.+.++.+.+.+.+.+||++|+...++
T Consensus        41 ~~ylD~~~g~~~~~lGh~~p~i~~Av~-~q~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik  116 (404)
T d2byla1          41 RKYFDFLSSISAVNQGHCHPKIVNALK-SQVD--K-LTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACK  116 (404)
T ss_dssp             CEEEESSHHHHTCTTCBTCHHHHHHHH-HHHT--T-CCCCCTTEEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHH
T ss_pred             CEEEEecCCHHHHhhcCCCHHHHHHHH-HHHh--h-CCCcccccccchHHHHHHhhhhcccccccccccCccccchhHHH
Confidence            478888642  4447886655544432 2211  1 11111111224477788889999999999999999999864433


Q ss_pred             cc-----------CCCCeEEEcCCCCccHHHHH---------hhhcccCCcEEEEecCCCHHHHHhhcC-CCceEEEEeC
Q 022194           89 LL-----------GTGEEIVAGDDLYGGTDRLL---------SRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVES  147 (301)
Q Consensus        89 ~~-----------~~g~~Vlv~~~~y~~~~~~~---------~~~~~~~g~~~~~~~~~d~~~l~~~l~-~~~~~v~i~~  147 (301)
                      +.           ..+.+++.....||+.....         ........-.+..++..|++++++.+. +++.+|+++.
T Consensus       117 ~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEP  196 (404)
T d2byla1         117 LARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEP  196 (404)
T ss_dssp             HHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECS
T ss_pred             HHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECC
Confidence            32           12356777777777643211         111222223466777889999999997 4678899988


Q ss_pred             CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-ccc---cCccCCC--CcEEEecccccccCCCCceeeEEEEcc
Q 022194          148 PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVL---SRPLELG--ADIVMHSATKFIAGHSDVMAGVLAVKG  217 (301)
Q Consensus       148 ~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~---~~~~~~~--~di~~~S~sK~~~g~~g~~~g~~~~~~  217 (301)
                      .....|...+    +++|.++|++||+++|+||++.. +..   ......|  .|++  +++|.++| +.+..|.++.++
T Consensus       197 i~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~--~~gK~l~g-G~~p~~av~~~~  273 (404)
T d2byla1         197 IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG-GLYPVSAVLCDD  273 (404)
T ss_dssp             SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECH
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEE--EECchhhC-CCccceeeeech
Confidence            7777787754    99999999999999999999853 222   2222334  4555  69999965 334578887764


Q ss_pred             hhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHHhC--CCcceEecCC
Q 022194          218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASH--PRVKKVNYAG  281 (301)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~--~~v~~v~~p~  281 (301)
                       .+.+.+.......+.+-++..++++.+.++.+++  ..++..+..+++.+.|+++  +.+..++.-|
T Consensus       274 -~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~i~~vRg~G  340 (404)
T d2byla1         274 -DIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKG  340 (404)
T ss_dssp             -HHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSCTTTEEEEEEET
T ss_pred             -hhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHHHHHHHHhhccccceeeeecc
Confidence             4544333444445556688888888888887642  3455566666777777764  2344444433

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.61  E-value=5.8e-15  Score=130.04  Aligned_cols=250  Identities=14%  Similarity=0.126  Sum_probs=154.7

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC-CceEEecchHHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA-DRALCFTSGMAALAAVT   87 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~-~~~i~~~sG~~ai~~~~   87 (301)
                      .++|||.+.  +..+|..++ .+..+...+.+  +   ..+.........++.+.+.+.... +.+.+++||++|+..++
T Consensus        52 ~~ylD~~~~~~~~~lGh~hp-~i~~ai~~~~~--~---~~~~~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Al  125 (427)
T d2gsaa_          52 NRYIDYVGTWGPAICGHAHP-EVIEALKVAME--K---GTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVL  125 (427)
T ss_dssp             CEEEESSGGGTTTTTCBTCH-HHHHHHHHHHT--T---CSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHH
T ss_pred             CEEEEechhHHHHhccCCcH-HHHHHHHHHHH--h---cCccccchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHH
Confidence            478998643  456888544 44433222211  1   111111334466777888777644 46778889999986444


Q ss_pred             hc---cCCCCeEEEcCCCCccHHHHH---------h-hhccc------CCcEEEEecCCCHHHHHhhcC---CCceEEEE
Q 022194           88 HL---LGTGEEIVAGDDLYGGTDRLL---------S-RVTPK------TGVVVKRVNTCDLDEVASAIG---PWTKLVWV  145 (301)
Q Consensus        88 ~~---~~~g~~Vlv~~~~y~~~~~~~---------~-~~~~~------~g~~~~~~~~~d~~~l~~~l~---~~~~~v~i  145 (301)
                      .+   ....++|+.....||+.....         . .....      ........+..|++.+++.++   +++.+|++
T Consensus       126 k~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~  205 (427)
T d2gsaa_         126 RLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVIL  205 (427)
T ss_dssp             HHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEE
T ss_pred             HHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEE
Confidence            43   335678999899998753110         0 00000      112344556679999999887   47789999


Q ss_pred             eCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCcccc---CccCCCCcEEEecccccccCCCCceeeEEEEcch
Q 022194          146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (301)
Q Consensus       146 ~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~  218 (301)
                      +......|.+.+    +++|.++|++||+++|+||++......   .....+....+.+++|.++|  |+..++++++++
T Consensus       206 Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~gK~lgg--G~p~~a~~~~~~  283 (427)
T d2gsaa_         206 EPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTTLGKIIGG--GLPVGAYGGKRE  283 (427)
T ss_dssp             CSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEEECGGGGT--TSCCEEEEECHH
T ss_pred             cCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHHHhhhhccCC--CcceeeeeehHH
Confidence            987777788776    999999999999999999998642211   11123333333448999865  355677777654


Q ss_pred             hHHHHHHH---hhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHH
Q 022194          219 RLAKELYF---LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA  269 (301)
Q Consensus       219 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~  269 (301)
                       +.+.+..   ....++...++..++++++.++.+.  +..++..++.+++.+.|+
T Consensus       284 -i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~  338 (427)
T d2gsaa_         284 -IMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLL  338 (427)
T ss_dssp             -HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHH
Confidence             4443221   1223345668888888888877653  344566666666666664

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.61  E-value=9.6e-15  Score=127.78  Aligned_cols=266  Identities=14%  Similarity=0.108  Sum_probs=154.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEecchHHHHHHHHh
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~~~~~   88 (301)
                      .+++||.++  +.-+|..++.+..+.. .+..  . ..+..........+.+++.+.+..+.+.+.+..+|++|.....+
T Consensus        39 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~-~q~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k  114 (404)
T d1z7da1          39 KRYYDFLSAYSSVNQGHCHPNILNAMI-NQAK--N-LTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYK  114 (404)
T ss_dssp             CEEEESSHHHHTTTTCBTCHHHHHHHH-HHHT--T-CSCCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHH
T ss_pred             CEEEEccccHHHHhhhcCcHHHHHHHH-HHHH--h-CCCcccccchHHHHHHHHhhhhccccceeeeeccccchHHHHHH
Confidence            478888643  4557876555444332 2211  1 11111111223467788888888899989999999988753322


Q ss_pred             cc-----------CCCCeEEEcCCCCccHHHHHhhhcccC---------CcEEEEecCCCHHHHHhhcC-CCceEEEEeC
Q 022194           89 LL-----------GTGEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIG-PWTKLVWVES  147 (301)
Q Consensus        89 ~~-----------~~g~~Vlv~~~~y~~~~~~~~~~~~~~---------g~~~~~~~~~d~~~l~~~l~-~~~~~v~i~~  147 (301)
                      +.           .....++.....|++............         -..+..++.++.+.++..+. +++.+|+++.
T Consensus       115 ~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EP  194 (404)
T d1z7da1         115 LCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEP  194 (404)
T ss_dssp             HHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECS
T ss_pred             HHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEE
Confidence            21           123467777777777642221111111         11344455568888888876 4678999998


Q ss_pred             CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-c---cccCccCCCCcEEEecccccccCCCCceeeEEEEcchh
Q 022194          148 PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-P---VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (301)
Q Consensus       148 ~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~---~~~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~  219 (301)
                      .....|.+.+    +++|.++|++||+++|+||++.. +   ........|....+.+++|.+++ +.+..|.++.++ .
T Consensus       195 i~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~gK~l~g-G~~p~~~v~~~~-~  272 (404)
T d1z7da1         195 IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSG-GHYPISAVLAND-D  272 (404)
T ss_dssp             SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT-TSSCCEEEEECH-H
T ss_pred             EcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEEEEcccccC-CCCCcccccchH-H
Confidence            8887888765    89999999999999999999852 2   22222233443344469999965 334578887775 4


Q ss_pred             HHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHH----HHHHHHHHHhCCCcceEecCCC
Q 022194          220 LAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDN----AQKIAEFLASHPRVKKVNYAGL  282 (301)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~----~~~l~~~l~~~~~v~~v~~p~~  282 (301)
                      +.+.+.......+...+|.+++++...++.+.  ...++..+.    .+.+.+.+++++.+..++.-|+
T Consensus       273 i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl  341 (404)
T d1z7da1         273 IMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGL  341 (404)
T ss_dssp             HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETT
T ss_pred             HHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCc
Confidence            44433333334445568888888877776542  122222222    2344555566777766665444

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.60  E-value=2.5e-14  Score=123.83  Aligned_cols=161  Identities=17%  Similarity=0.244  Sum_probs=122.0

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEe-cchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           56 TRDALESLLAKLDKAD--RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~-~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ..+++++.++++++.+  ..+++ +|||.++. ++..++.+++++++....+....  +.......+.....+...    
T Consensus        52 i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  129 (377)
T d1vjoa_          52 LMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNR--LVDMAGRYGADVRTISKPWGEV  129 (377)
T ss_dssp             HHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhh--hhhhhhhhcccccccccCCCCc
Confidence            3788999999999875  35555 44578875 67778999999998877765443  334444555554444432    


Q ss_pred             -CHHHHH-hhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccC
Q 022194          128 -DLDEVA-SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       128 -d~~~l~-~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (301)
                       +.+..+ ....++++++.+++.+|.||...|+++|.++||++|+++++|.+++.+... +....++|+++.|.+|+++|
T Consensus       130 ~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~g  209 (377)
T d1vjoa_         130 FSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGC  209 (377)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCS
T ss_pred             ccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeecccccccC
Confidence             333333 334468899999999999999999999999999999999999999988765 56677999999999999988


Q ss_pred             CCCceeeEEEEcchhH
Q 022194          205 HSDVMAGVLAVKGERL  220 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~  220 (301)
                      |+|  +|+++.+++.+
T Consensus       210 p~g--~~~~~~~~~~~  223 (377)
T d1vjoa_         210 SPG--ASPFTMSSRAI  223 (377)
T ss_dssp             CSS--CEEEEECHHHH
T ss_pred             CCE--EEEecchhhHH
Confidence            887  47777665433

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.58  E-value=2e-14  Score=124.47  Aligned_cols=205  Identities=19%  Similarity=0.173  Sum_probs=131.6

Q ss_pred             HHHHHhhcCCCce-----EEecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHHh----hhcccCCcEEEEec--C--
Q 022194           61 ESLLAKLDKADRA-----LCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS----RVTPKTGVVVKRVN--T--  126 (301)
Q Consensus        61 ~~~l~~~~~~~~~-----i~~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~----~~~~~~g~~~~~~~--~--  126 (301)
                      .++..++|+++.+     +=.-||+.|. .++.++++|||+|+..++.+.++...-.    ......+..+..++  .  
T Consensus        79 ~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~  158 (463)
T d2a7va1          79 QRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP  158 (463)
T ss_dssp             HHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT
T ss_pred             HHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccC
Confidence            3667788998853     5567888775 6888999999999988877766642210    01111222222222  1  


Q ss_pred             ----CCHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CccccCccCCCCcEEEe
Q 022194          127 ----CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMH  196 (301)
Q Consensus       127 ----~d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~-----~~~~~~~~~~~~di~~~  196 (301)
                          .|.+++++..+ .++++|++....+|  ...|+++++++|++.|.++++|.+|.     .+.+++|... +|++++
T Consensus       159 ~~~~IDyd~~~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-aDvvt~  235 (463)
T d2a7va1         159 KTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTT  235 (463)
T ss_dssp             TTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEE
T ss_pred             CCCcCcHHHHHHHHhhcCCceEEecccccc--cccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-hhhhhc
Confidence                18888888776 58999998877776  46799999999999999999999996     4567788875 799999


Q ss_pred             cccccccCCCCceeeEEEEcch--------------hHHHHHHHhhhhcC-CCCCHHhHHH----HHccc-ccHHHHHHH
Q 022194          197 SATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAEG-SGLAPFDCWI----CLRGV-KTMALRVEK  256 (301)
Q Consensus       197 S~sK~~~g~~g~~~g~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~l-~~~~~~~~~  256 (301)
                      |.||+|.||   |+|+++++++              .+.+++........ .+......++    +.+.+ ..+.++.++
T Consensus       236 tTHKTlrGP---rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~q  312 (463)
T d2a7va1         236 TTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQ  312 (463)
T ss_dssp             ESSGGGCSC---SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             hhhhhhcCC---CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHH
Confidence            999999988   5799998763              34444433222111 1122211111    12222 246788899


Q ss_pred             HHHHHHHHHHHHHhC
Q 022194          257 QQDNAQKIAEFLASH  271 (301)
Q Consensus       257 ~~~~~~~l~~~l~~~  271 (301)
                      ..+|++.|.+.|.+.
T Consensus       313 Vv~NAk~La~~L~~~  327 (463)
T d2a7va1         313 VLKNARAMADALLER  327 (463)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999999986

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.58  E-value=4.7e-14  Score=122.71  Aligned_cols=161  Identities=17%  Similarity=0.256  Sum_probs=123.4

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEec-chHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           56 TRDALESLLAKLDKAD--RALCFT-SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        56 ~~~~l~~~l~~~~~~~--~~i~~~-sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ..+++++.|+++++.+  +.++++ |||.++. ++..++.++++|++....+.+...  .......+.....+...    
T Consensus        51 i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~  128 (388)
T d2ch1a1          51 TMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERA--VEMSERYGADVRTIEGPPDRP  128 (388)
T ss_dssp             HHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHH--HHHHHHTTCEEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccc--hhhhhhhcccccccccccccc
Confidence            3788999999999876  456665 5578886 667788899999987766655432  23444555555555533    


Q ss_pred             -CHHHHHhhc-CCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccC
Q 022194          128 -DLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (301)
Q Consensus       128 -d~~~l~~~l-~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (301)
                       +.+.++... ..+++++++++.+|.+|...|+++|+++||++|+++++|.+++.+... +..+.++|+++.|.+|+++|
T Consensus       129 ~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~g  208 (388)
T d2ch1a1         129 FSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGA  208 (388)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCC
T ss_pred             cchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCceEEEEccccccCC
Confidence             445454444 368899999999999999999999999999999999999999988765 56678999999999999999


Q ss_pred             CCCceeeEEEEcchhH
Q 022194          205 HSDVMAGVLAVKGERL  220 (301)
Q Consensus       205 ~~g~~~g~~~~~~~~~  220 (301)
                      |+|+  |+++.+++.+
T Consensus       209 p~G~--g~~~~~~~~~  222 (388)
T d2ch1a1         209 PPGI--TPISISPKAL  222 (388)
T ss_dssp             CSSC--EEEEECHHHH
T ss_pred             CCeE--EEEeccHHHH
Confidence            9884  8887775544

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.56  E-value=1.4e-13  Score=119.51  Aligned_cols=212  Identities=19%  Similarity=0.136  Sum_probs=144.5

Q ss_pred             CCchHHHHH----HHHHhhcCCC-c----eEEecchHHHH-HHHHhccCCCCeEEEcCCCCccHHHHHhhhc--ccC---
Q 022194           53 GNPTRDALE----SLLAKLDKAD-R----ALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVT--PKT---  117 (301)
Q Consensus        53 g~~~~~~l~----~~l~~~~~~~-~----~i~~~sG~~ai-~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~--~~~---  117 (301)
                      |....++++    +++.++|+.+ +    .+=.-||+.|. .++.++++|||+|+..+...+++...- ...  ...   
T Consensus        71 G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg-~~~~~~~~~~~  149 (470)
T d1rv3a_          71 GTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHG-FMTDKKKISAT  149 (470)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGC-CBCSSCBCSHH
T ss_pred             CchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCccccc-ccccCCCcccc
Confidence            555566666    4457889876 2    23347788775 688899999999998887666664210 000  011   


Q ss_pred             --CcEEEEecCC------CHHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCC-----ccc
Q 022194          118 --GVVVKRVNTC------DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-----PVL  183 (301)
Q Consensus       118 --g~~~~~~~~~------d~~~l~~~l~-~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~-----~~~  183 (301)
                        ..+....+.+      |.+++++..+ .++++|++....+|  ...|++++.++|++.|+++++|.+|-.     +.+
T Consensus       150 ~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~  227 (470)
T d1rv3a_         150 SIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYS--RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV  227 (470)
T ss_dssp             HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS
T ss_pred             cceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhhcc--ccCCHHHHHHHHhccCCeEEecchhhhhhcccccc
Confidence              1234344322      7899988776 58999998877776  467999999999999999999999964     567


Q ss_pred             cCccCCCCcEEEecccccccCCCCceeeEEEEcch--------------hHHHHHHHhhhhcC-CCCCHHhHHH----HH
Q 022194          184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAEG-SGLAPFDCWI----CL  244 (301)
Q Consensus       184 ~~~~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~~~----~~  244 (301)
                      ++|+.. +|++++|.||+|.||   |+|+++++++              .+.+++........ .+......++    +.
T Consensus       228 ~sPl~~-aDvvt~tTHKtlrGP---rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~  303 (470)
T d1rv3a_         228 PSPFEH-CHVVTTTTHKTLRGC---RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK  303 (470)
T ss_dssp             CCGGGT-CSEEEEESSGGGCCC---SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH
T ss_pred             CChhhe-eeeeeeehhhhccCC---cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHH
Confidence            788875 699999999999988   5699998764              24444433322111 1121211111    22


Q ss_pred             ccc-ccHHHHHHHHHHHHHHHHHHHHhC
Q 022194          245 RGV-KTMALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       245 ~~l-~~~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      +.+ ..+.++.++..+|++.|.+.|.+.
T Consensus       304 ea~~~~fk~Ya~qvv~NAk~La~~L~~~  331 (470)
T d1rv3a_         304 QAMTPEFKEYQRQVVANCRALSAALVEL  331 (470)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHhC
Confidence            222 356788899999999999999986

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=7.7e-15  Score=129.29  Aligned_cols=265  Identities=15%  Similarity=0.134  Sum_probs=156.4

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC---CceEEecchHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAALAA   85 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~---~~~i~~~sG~~ai~~   85 (301)
                      .++|||.++  +.-+|..++.+..+.. .+.+  ...........++...++.+.+.+.+..   +.+.+++||++|+..
T Consensus        40 ~~ylD~~~g~~~~~lGh~~p~i~~ai~-~q~~--~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~  116 (425)
T d1sffa_          40 REYLDFAGGIAVLNTGHLHPKVVAAVE-AQLK--KLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVEN  116 (425)
T ss_dssp             CEEEESSHHHHTCTTCBTCHHHHHHHH-HHTT--TCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHH
T ss_pred             CEEEEcCcCHHhhcccCCcHHHHHHHH-HHHh--hcCCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhh
Confidence            578888643  5568887666655432 2222  1111111111345578888899888743   357778999999864


Q ss_pred             HHhc---cCCCCeEEEcCCCCccHHHHHhhhccc----------CCcEEEEecCC-------------CHHHHHhhc--C
Q 022194           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK----------TGVVVKRVNTC-------------DLDEVASAI--G  137 (301)
Q Consensus        86 ~~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~----------~g~~~~~~~~~-------------d~~~l~~~l--~  137 (301)
                      .+++   ....++|+.....||+.......+...          ........+..             +.+++....  .
T Consensus       117 Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (425)
T d1sffa_         117 AVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAP  196 (425)
T ss_dssp             HHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCG
T ss_pred             HHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccc
Confidence            4443   334678999899999875432211110          00111111111             111111111  1


Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-cc---ccCccCCCCcEEEecccccccCCCCce
Q 022194          138 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PV---LSRPLELGADIVMHSATKFIAGHSDVM  209 (301)
Q Consensus       138 ~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~---~~~~~~~~~di~~~S~sK~~~g~~g~~  209 (301)
                      .++.+|+++......|...+    +++|.++|++||+++|+||+++. +-   ......+|....+.+++|.++|  |+.
T Consensus       197 ~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~gK~l~g--G~P  274 (425)
T d1sffa_         197 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAG--GFP  274 (425)
T ss_dssp             GGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGT--SSC
T ss_pred             cceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecccccCC--Ccc
Confidence            46788999987776777653    89999999999999999999874 22   2222334444445559999965  356


Q ss_pred             eeEEEEcchhHHHHHHHhhhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHH----HHhCCCcceEecCC
Q 022194          210 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEF----LASHPRVKKVNYAG  281 (301)
Q Consensus       210 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~----l~~~~~v~~v~~p~  281 (301)
                      .|.++++++ +.+.+.......+.+.++..++++++.++.+.  ...++.....+++.+.    +++++.+..++.-|
T Consensus       275 ~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~G  351 (425)
T d1sffa_         275 LAGVTGRAE-VMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLG  351 (425)
T ss_dssp             CEEEEEEHH-HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEET
T ss_pred             eEEEEEcHH-HHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccc
Confidence            788887754 44433333344456678888888888887763  2334444444455444    44567666665444

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.1e-14  Score=129.97  Aligned_cols=213  Identities=15%  Similarity=0.111  Sum_probs=139.9

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCe---------EEEcCCCCccHHHHHhhhcccCCcEEE
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEE---------IVAGDDLYGGTDRLLSRVTPKTGVVVK  122 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~---------Vlv~~~~y~~~~~~~~~~~~~~g~~~~  122 (301)
                      ++|...+|++.+++++|.+.+++++||++|.. ++..++++|+.         +..+ ..|+...   .......|..+.
T Consensus        72 ~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~-~~~~~~~---~~~~~~~G~~~~  147 (467)
T d2v1pa1          72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTT---QGHSQINGCTVR  147 (467)
T ss_dssp             SCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHH---HHHHHHTTCEEE
T ss_pred             CCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEe-ccccccc---HHHHHHcCCeee
Confidence            56789999999999999999999999998874 55555554443         3333 3344332   134455667776


Q ss_pred             EecCC---------------CHHHHHhhcC----CCceEEEEeCCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcC
Q 022194          123 RVNTC---------------DLDEVASAIG----PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM  179 (301)
Q Consensus       123 ~~~~~---------------d~~~l~~~l~----~~~~~v~i~~~~np~G~~~----~l~~l~~l~~~~~~~li~D~~~~  179 (301)
                      .++.+               |++++++.++    +.+++++++..+|..|...    ++++|.++|++||++||+|+++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~  227 (467)
T d2v1pa1         148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF  227 (467)
T ss_dssp             ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred             ecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence            66532               6888888875    3578888888888765442    58999999999999999999985


Q ss_pred             Cccc----------cC-c-------cCCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhhh----hcC----C
Q 022194          180 SPVL----------SR-P-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN----AEG----S  233 (301)
Q Consensus       180 ~~~~----------~~-~-------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~~----~~~----~  233 (301)
                      .+..          .. .       ....+|++.+|.+|.++++   .+|++..+++.+.........    ..+    .
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~---~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (467)
T d2v1pa1         228 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG  304 (467)
T ss_dssp             HHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCC
T ss_pred             hccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCC---CceeEEecchhhhhHHHhhcccccccccCcchh
Confidence            3211          00 0       0123789999999998765   368888887665443322211    111    2


Q ss_pred             CCCHHhHHHHHccc--ccHHHHHHHHHHHHHHHHHHHHhCC
Q 022194          234 GLAPFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHP  272 (301)
Q Consensus       234 ~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~  272 (301)
                      ........+....+  ....+..++..++++++.+.|++..
T Consensus       305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (467)
T d2v1pa1         305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIG  345 (467)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            23333333322222  2224566777888999999998854

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=3.4e-14  Score=120.64  Aligned_cols=164  Identities=23%  Similarity=0.237  Sum_probs=109.6

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      ..|...+|++.+++++|.+++++++||++|+. ++..+.++||.+++..+.|..+.... ......+..+..++..    
T Consensus        32 ~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  110 (343)
T d1m6sa_          32 EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPVPGKNGAM  110 (343)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEECEETTEE
T ss_pred             CCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhccCCceeccccccceeeecc-cccccccceeeccccccCcc
Confidence            35779999999999999999999999998874 77788899999999888775543111 2222334455554432    


Q ss_pred             CHHHHHhhcCC------CceEEEEe-CCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCccccCc------cCCCC
Q 022194          128 DLDEVASAIGP------WTKLVWVE-SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP------LELGA  191 (301)
Q Consensus       128 d~~~l~~~l~~------~~~~v~i~-~~~np~G~~~~---l~~l~~l~~~~~~~li~D~~~~~~~~~~~------~~~~~  191 (301)
                      |++.+++.+..      .+..+++. .++++.|.+.+   +++|+++|+++|+++++|++++.+.....      .....
T Consensus       111 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~  190 (343)
T d1m6sa_         111 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYA  190 (343)
T ss_dssp             CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTC
T ss_pred             CHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhcccc
Confidence            78888888763      34444444 55566666654   77888888999999999999875432211      11124


Q ss_pred             cEEEecccccccCCCCceeeEEEEcchhH
Q 022194          192 DIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (301)
Q Consensus       192 di~~~S~sK~~~g~~g~~~g~~~~~~~~~  220 (301)
                      +..+.+.+|..++.   .++++....+..
T Consensus       191 ~~~~~~~~~~~~g~---~~~~~~~~~~~~  216 (343)
T d1m6sa_         191 DSVMFCLSKGLCAP---VGSVVVGDRDFI  216 (343)
T ss_dssp             SEEEEESSSTTCCS---SCEEEEECHHHH
T ss_pred             cccccccccccccc---ccccccccHHHH
Confidence            55565666655443   356666654433

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.53  E-value=1.6e-13  Score=116.22  Aligned_cols=252  Identities=17%  Similarity=0.098  Sum_probs=143.9

Q ss_pred             eeeecCCCCCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceE-EecchHHHHH-HHHhc
Q 022194           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRAL-CFTSGMAALA-AVTHL   89 (301)
Q Consensus        12 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~~~~~i-~~~sG~~ai~-~~~~~   89 (301)
                      -.|+|+ +++|.|.  +|.+..+...  . .......|.  .++..+++++++++++|.+..+ +++|||+|+. ++...
T Consensus         3 ~~~~f~-s~n~~g~--~P~v~~A~~~--a-~~~~~~~~~--~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~   74 (345)
T d1v72a1           3 PALGFS-SDNIAGA--SPEVAQALVK--H-SSGQAGPYG--TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAM   74 (345)
T ss_dssp             CCCBCS-CGGGCCC--CHHHHHHHHH--T-TSSCCCSTT--CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTS
T ss_pred             CCcCcC-CCCCCCC--CHHHHHHHHH--H-hccCccccC--CCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHH
Confidence            468999 7888885  5666654321  1 111112222  3466999999999999998555 5688998875 66667


Q ss_pred             cCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC-----CCHHHHHhhcCC------Cce-EEEEeCCCCCcccc--
Q 022194           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGP------WTK-LVWVESPTNPRQQI--  155 (301)
Q Consensus        90 ~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~------~~~-~v~i~~~~np~G~~--  155 (301)
                      +.+++.+++....+..+.... ......+..+..++.     .+++.++..+..      .+. .++...+.++.+..  
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (345)
T d1v72a1          75 TPPWGNIYCHPASHINNDECG-APEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYT  153 (345)
T ss_dssp             CCTTEEEEECTTSHHHHSSTT-HHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCC
T ss_pred             HhcCCccccccccceeeechh-hHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeecccccccccc
Confidence            778888877666554432111 122333445555543     378888888763      233 33334455555554  


Q ss_pred             -ccHHHHHHHHHHcCCEEEEeCCcCCcccc----Ccc----CCCCcEEEecccccccCCCCceeeEEEEcchhHHHHHHH
Q 022194          156 -CDIRKIAEMAHAHGALLLVDNSIMSPVLS----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (301)
Q Consensus       156 -~~l~~l~~l~~~~~~~li~D~~~~~~~~~----~~~----~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~  226 (301)
                       .+++++.++|+++|+++++|+++..+...    ...    ....+..+.+.+|..  ...  .+...............
T Consensus       154 ~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~  229 (345)
T d1v72a1         154 LDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNG--VLA--AEAIVLFNTSLATEMSY  229 (345)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGT--CSS--CEEEEESSGGGHHHHHH
T ss_pred             chhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccc--ccc--ccccccchhhhhhhccc
Confidence             45888999999999999999998643221    111    112344444444433  222  34444444443333222


Q ss_pred             hhhhcC--CCCCHHhHHHHHcccc--cHHHHHHHHHHHHHHHHHHHHhCCCcce
Q 022194          227 LQNAEG--SGLAPFDCWICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRVKK  276 (301)
Q Consensus       227 ~~~~~~--~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~v~~  276 (301)
                      .....+  .......+......+.  ...+...+..++.+++.+.+.+++++..
T Consensus       230 ~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  283 (345)
T d1v72a1         230 RRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEV  283 (345)
T ss_dssp             HHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             cccccccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEe
Confidence            222222  2223333333323222  2345556666777888888988888743

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=2.1e-13  Score=119.92  Aligned_cols=267  Identities=13%  Similarity=0.033  Sum_probs=154.9

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~   86 (301)
                      .++|||.++  +..+|..++.+..+.. .+.+  ............+...++.+++.+...  .+.+.+.+||++|+...
T Consensus        43 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~-~q~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A  119 (429)
T d1s0aa_          43 RRLVDGMSSWWAAIHGYNHPQLNAAMK-SQID--AMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA  119 (429)
T ss_dssp             CEEEESSTTTTTCTTCBSCHHHHHHHH-HHHH--HCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHH
T ss_pred             CEEEECcccHHHHhhcCCcHHHHHHHH-HHHH--hcCCcccCCccchHHHHHHHHHHhhhccCcceeeeccccccchhhh
Confidence            378998644  4558877655544432 2211  111111222233446667777777653  34677889999888543


Q ss_pred             Hhcc--------CCCCeEEEcCCCCccHHHHHhhhccc----------CCcEEEEecC-----------CCHHHHHhhc-
Q 022194           87 THLL--------GTGEEIVAGDDLYGGTDRLLSRVTPK----------TGVVVKRVNT-----------CDLDEVASAI-  136 (301)
Q Consensus        87 ~~~~--------~~g~~Vlv~~~~y~~~~~~~~~~~~~----------~g~~~~~~~~-----------~d~~~l~~~l-  136 (301)
                      +.+.        .++.+|+.....||+.......+...          ........+.           .+.+.+++.+ 
T Consensus       120 ~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (429)
T d1s0aa_         120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA  199 (429)
T ss_dssp             HHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHH
T ss_pred             hhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhh
Confidence            3322        23468998899888764322111110          0011111111           1344444433 


Q ss_pred             --CCCceEEEEeCCC-CCccccc-c---HHHHHHHHHHcCCEEEEeCCcCCc-c---ccCccCCCCcEEEecccccccCC
Q 022194          137 --GPWTKLVWVESPT-NPRQQIC-D---IRKIAEMAHAHGALLLVDNSIMSP-V---LSRPLELGADIVMHSATKFIAGH  205 (301)
Q Consensus       137 --~~~~~~v~i~~~~-np~G~~~-~---l~~l~~l~~~~~~~li~D~~~~~~-~---~~~~~~~~~di~~~S~sK~~~g~  205 (301)
                        .+++.+|+++... +..|... |   +++|.++|++||+++|+||++... -   .......+....+.+++|.+++ 
T Consensus       200 ~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~gK~l~g-  278 (429)
T d1s0aa_         200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTG-  278 (429)
T ss_dssp             HHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT-
T ss_pred             hcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceeccccccccccccc-
Confidence              3678899998765 4344433 3   899999999999999999998632 2   2222233443344449999954 


Q ss_pred             CCceeeEEEEcchhHHHHHHHh-----hhhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHHHHHHHHh---CCCcc
Q 022194          206 SDVMAGVLAVKGERLAKELYFL-----QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS---HPRVK  275 (301)
Q Consensus       206 ~g~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~---~~~v~  275 (301)
                      +++..+.+++++ .+.+.+...     .+..+.+.++..++++++.++.+.  +..++..+..+++++.|++   .+.|.
T Consensus       279 G~~p~~av~~~~-~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~  357 (429)
T d1s0aa_         279 GTMTLSATLTTR-EVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVA  357 (429)
T ss_dssp             SSSCCEEEEECH-HHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEE
T ss_pred             ccccccchhhHH-HHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHHHHHHHhccCCceE
Confidence            445678887775 444433321     123445567888888888887763  3556666666777777744   55565


Q ss_pred             eEecCCC
Q 022194          276 KVNYAGL  282 (301)
Q Consensus       276 ~v~~p~~  282 (301)
                      .++..|+
T Consensus       358 ~vrg~Gl  364 (429)
T d1s0aa_         358 DVRVLGA  364 (429)
T ss_dssp             EEEEETT
T ss_pred             EEeeccc
Confidence            6665554

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.47  E-value=1.1e-13  Score=121.96  Aligned_cols=264  Identities=14%  Similarity=0.092  Sum_probs=151.2

Q ss_pred             ceeeecCCC--CCCCCccccCeeecceeecCCCCCCCCccccCCCCchHHHHHHHHHhhc--CCCceEEecchHHHHHHH
Q 022194           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD--KADRALCFTSGMAALAAV   86 (301)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~p~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~--~~~~~i~~~sG~~ai~~~   86 (301)
                      .+++||.++  +.-+|..++.+..+.. .+.+   ...+....+.++...++.++|.++.  +.+.+.+++||++|+...
T Consensus        41 ~~ylD~~~g~~~~~lGh~~p~v~~ai~-~q~~---~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~A  116 (431)
T d1zoda1          41 RAILDFTSGQMSAVLGHCHPEIVSVIG-EYAG---KLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAA  116 (431)
T ss_dssp             CEEEETTHHHHTCTTCBTCHHHHHHHH-HHHH---HCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHH
T ss_pred             CEEEEcccCHHhhhhcCCCHHHHHHHH-HHHh---hccccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHH
Confidence            478888643  5568986655544332 2211   1112222223455778888888876  556788899999998644


Q ss_pred             Hhc---cCCCCeEEEcCCCCccHHHHHhhhcccC--------CcEEEEecCC-----------------CHHHHHhhc--
Q 022194           87 THL---LGTGEEIVAGDDLYGGTDRLLSRVTPKT--------GVVVKRVNTC-----------------DLDEVASAI--  136 (301)
Q Consensus        87 ~~~---~~~g~~Vlv~~~~y~~~~~~~~~~~~~~--------g~~~~~~~~~-----------------d~~~l~~~l--  136 (301)
                      +++   ...+++|+.....||+.....-......        ......++..                 +.+.++..+  
T Consensus       117 lk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (431)
T d1zoda1         117 IRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR  196 (431)
T ss_dssp             HHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHH
Confidence            433   3456789998999998753321111100        0111111110                 122332222  


Q ss_pred             --CCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-cccc---CccCCCCcEEEecccccccCCC
Q 022194          137 --GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELGADIVMHSATKFIAGHS  206 (301)
Q Consensus       137 --~~~~~~v~i~~~~np~G~~~~----l~~l~~l~~~~~~~li~D~~~~~-~~~~---~~~~~~~di~~~S~sK~~~g~~  206 (301)
                        .+++.+|+++......|.+.+    +++|.++|++||+++|.||++.. +-..   .....|....+.+++|.++|. 
T Consensus       197 ~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG-  275 (431)
T d1zoda1         197 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG-  275 (431)
T ss_dssp             HCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT-
T ss_pred             hccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhccccccccc-
Confidence              357889999987776677654    99999999999999999999874 3222   222334444444499999764 


Q ss_pred             CceeeEEEEcchhHHHHHHHhh--hhcCCCCCHHhHHHHHcccccHH--HHHHHHHHHHHH----HHHHHHhCCCcceEe
Q 022194          207 DVMAGVLAVKGERLAKELYFLQ--NAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQK----IAEFLASHPRVKKVN  278 (301)
Q Consensus       207 g~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~----l~~~l~~~~~v~~v~  278 (301)
                       +..+.++++++.. .......  ..++.+.++..++++.+.++.+.  ...++..+..++    +.+.+++++.+..++
T Consensus       276 -~p~~av~~~~~~~-~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vr  353 (431)
T d1zoda1         276 -LPLAAIVTSAAIE-ERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVR  353 (431)
T ss_dssp             -SSCEEEEECHHHH-HHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             -cccceeeeeecch-hhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEe
Confidence             3456666664433 3332222  23445667777777777666532  122333333333    444445567666665


Q ss_pred             cCC
Q 022194          279 YAG  281 (301)
Q Consensus       279 ~p~  281 (301)
                      ..|
T Consensus       354 G~G  356 (431)
T d1zoda1         354 GRG  356 (431)
T ss_dssp             EET
T ss_pred             ecc
Confidence            544

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.44  E-value=6.4e-13  Score=118.28  Aligned_cols=212  Identities=16%  Similarity=0.147  Sum_probs=127.0

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecchHHHHH-HHHhccCCC-------CeEEEcCCCCccHHHHHhhhcccCCcEEEEe
Q 022194           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTG-------EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (301)
Q Consensus        53 g~~~~~~l~~~l~~~~~~~~~i~~~sG~~ai~-~~~~~~~~g-------~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~  124 (301)
                      +++...+|++.+++++|.+.+++++||++|.. ++..++++|       ..++... .|+....   ......|.....+
T Consensus        73 ~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~-~h~~t~~---~~~~~~g~~~~~~  148 (465)
T d1ax4a_          73 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISN-FHFDTTA---AHVELNGCKAINI  148 (465)
T ss_dssp             SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEES-SCCHHHH---HHHHHTTCEEEEC
T ss_pred             cChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEecc-chhhhhH---HHHHHcCCeeecc
Confidence            56778999999999999999999999998875 454454433       2344443 3333221   2233344454443


Q ss_pred             cC---------------CCHHHHHhhcC----CCceEEEEeCCCCCcccc-c---cHHHHHHHHHHcCCEEEEeCCcCCc
Q 022194          125 NT---------------CDLDEVASAIG----PWTKLVWVESPTNPRQQI-C---DIRKIAEMAHAHGALLLVDNSIMSP  181 (301)
Q Consensus       125 ~~---------------~d~~~l~~~l~----~~~~~v~i~~~~np~G~~-~---~l~~l~~l~~~~~~~li~D~~~~~~  181 (301)
                      ..               .|.++++++++    ..+.+++++.++|..|.. .   ++++|.++|++||+++|+|+++..+
T Consensus       149 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~  228 (465)
T d1ax4a_         149 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE  228 (465)
T ss_dssp             BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred             cccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhh
Confidence            21               17888988885    245667777777765543 2   4889999999999999999998632


Q ss_pred             cc----------cCc--------cCCCCcEEEecccccccCCCCceeeEEEEcchh-HHHHHHHh-hhhcC----CCCCH
Q 022194          182 VL----------SRP--------LELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYFL-QNAEG----SGLAP  237 (301)
Q Consensus       182 ~~----------~~~--------~~~~~di~~~S~sK~~~g~~g~~~g~~~~~~~~-~~~~~~~~-~~~~~----~~~~~  237 (301)
                      ..          ...        .....|++.+|.+|.++++   ++|+++.++.. +....... ....+    .....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~---~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (465)
T d1ax4a_         229 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG  305 (465)
T ss_dssp             HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCH
T ss_pred             hhcccccccccccccchhhhccccccccceeEeecccCcccc---cceeEeecchHHHHHhhhccccccccCCCcchhhH
Confidence            11          000        0112588999999988654   35888776543 22222111 11111    12222


Q ss_pred             HhHHHHHccccc--HHHHHHHHHHHHHHHHHHHHhC
Q 022194          238 FDCWICLRGVKT--MALRVEKQQDNAQKIAEFLASH  271 (301)
Q Consensus       238 ~~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~l~~~  271 (301)
                      ....+....+..  ..+..++..++++++.+.|++.
T Consensus       306 ~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~  341 (465)
T d1ax4a_         306 RDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA  341 (465)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            222222111111  1334566667788899998875

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.37  E-value=3.9e-12  Score=110.73  Aligned_cols=216  Identities=18%  Similarity=0.190  Sum_probs=145.5

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchHHHHH---HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHH
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGMAALA---AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE  131 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~~ai~---~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~  131 (301)
                      ..++++.++++.|.+  +.-...+++....   ++.+ ....++++++...|+.+...++..++..|++++.++.++...
T Consensus       110 l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~-~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~  188 (437)
T d1wyua1         110 TFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRT  188 (437)
T ss_dssp             HHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBC
T ss_pred             HHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHh-hhcccccccccccChHHhhhhhhhcccceeeEEeeecccccc
Confidence            668899999999998  2223333332222   2333 334678999999999888778888889999999999875544


Q ss_pred             HHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCc-CCccccCccCCCCcEEEecccccccCCCC---
Q 022194          132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSD---  207 (301)
Q Consensus       132 l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~-~~~~~~~~~~~~~di~~~S~sK~~~g~~g---  207 (301)
                      ....+.+++.+|++++|++ .|.+.++++|++++|+.|.++++|..- +.+....|.+.|+|+++++ +|.|+.|.+   
T Consensus       189 ~~~~~~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GG  266 (437)
T d1wyua1         189 PLPEVGEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGG  266 (437)
T ss_dssp             CCCCCCTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGC
T ss_pred             hhhhhccceeEEEEccccc-cccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEeec-cceeccccCCCc
Confidence            4445778999999999987 799999999999999999988887653 3455567888999999999 664433321   


Q ss_pred             ceeeEEEEcchhHHHHH-------------------------HHhhh--hcC--CCCCHHh-----HHHHHcccccHHHH
Q 022194          208 VMAGVLAVKGERLAKEL-------------------------YFLQN--AEG--SGLAPFD-----CWICLRGVKTMALR  253 (301)
Q Consensus       208 ~~~g~~~~~~~~~~~~~-------------------------~~~~~--~~~--~~~~~~~-----~~~~~~~l~~~~~~  253 (301)
                      .-+|++.++++.. +.+                         ..++.  ...  ++.+...     .+....+-+-+.+.
T Consensus       267 P~~G~~a~~~~l~-r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~i  345 (437)
T d1wyua1         267 PHFGFLATKKAFV-RQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREV  345 (437)
T ss_dssp             SCCEEEEECGGGG-GGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cccccccccchhh-ccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHH
Confidence            1258888875432 211                         00111  111  1222211     12222233335666


Q ss_pred             HHHHHHHHHHHHHHHHhCCCcce
Q 022194          254 VEKQQDNAQKIAEFLASHPRVKK  276 (301)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~v~~  276 (301)
                      -++...++.++.+.|.+++++..
T Consensus       346 a~~a~~~A~yl~~~L~~~~g~~~  368 (437)
T d1wyua1         346 ALKSVEMAHKLHALLLEVPGVRP  368 (437)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTCEE
T ss_pred             HHHHHHHHHHHHHHhhhcCCeec
Confidence            67888999999999998877643

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.31  E-value=4.9e-12  Score=112.06  Aligned_cols=218  Identities=14%  Similarity=0.086  Sum_probs=125.1

Q ss_pred             HHHHHHHHHhhcC--CCceEEecchHHHHHHHHhcc-----------------------------CCCCeEEEcCCCCcc
Q 022194           57 RDALESLLAKLDK--ADRALCFTSGMAALAAVTHLL-----------------------------GTGEEIVAGDDLYGG  105 (301)
Q Consensus        57 ~~~l~~~l~~~~~--~~~~i~~~sG~~ai~~~~~~~-----------------------------~~g~~Vlv~~~~y~~  105 (301)
                      .++|.+.+.+...  .+.+++.+||++|+...+.+.                             +++.+|+....+||+
T Consensus       102 a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG  181 (461)
T d1ohwa_         102 VEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHG  181 (461)
T ss_dssp             HHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCC
T ss_pred             HHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCC
Confidence            4556666665543  457888999999986433321                             234578988999998


Q ss_pred             HHHHHhhhc----------ccCCcEEEEecCC-----------------CHHHHHhhc------CCCceEEEEeCCCCCc
Q 022194          106 TDRLLSRVT----------PKTGVVVKRVNTC-----------------DLDEVASAI------GPWTKLVWVESPTNPR  152 (301)
Q Consensus       106 ~~~~~~~~~----------~~~g~~~~~~~~~-----------------d~~~l~~~l------~~~~~~v~i~~~~np~  152 (301)
                      .......+.          ......+...+..                 +.+++++.+      .+++.+|+++......
T Consensus       182 ~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~  261 (461)
T d1ohwa_         182 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEG  261 (461)
T ss_dssp             SSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTT
T ss_pred             CCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccc
Confidence            642221111          1111111111100                 134444443      2578899999888877


Q ss_pred             ccccc----HHHHHHHHHHcCCEEEEeCCcCC----ccccCccCCCC--cEEEecccccccCCCCceeeEEEEcchhHHH
Q 022194          153 QQICD----IRKIAEMAHAHGALLLVDNSIMS----PVLSRPLELGA--DIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (301)
Q Consensus       153 G~~~~----l~~l~~l~~~~~~~li~D~~~~~----~~~~~~~~~~~--di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~  222 (301)
                      |...+    +++|.++|++||+++|+||+++.    |.+.....++.  +..+.+++|.+++      |.+... ..+..
T Consensus       262 G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~l~~------g~~~~~-~~~~~  334 (461)
T d1ohwa_         262 GDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMT------GGFFHK-EEFRP  334 (461)
T ss_dssp             TCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGGGSS------EEEEEC-GGGSC
T ss_pred             cccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhhhcccc------cccccc-ccccc
Confidence            77653    89999999999999999999863    22222222332  2334458998853      333333 22211


Q ss_pred             HHHHhhhhcCCCCCHHhHHHHHcccccHHH--HHHHHHHHHHHHHHHHHh----CCC-cceEecCCC
Q 022194          223 ELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPR-VKKVNYAGL  282 (301)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~----~~~-v~~v~~p~~  282 (301)
                       ........+...++..++++++.++.+.+  ..++..+..+++.+.|++    +|. |..|+.-|+
T Consensus       335 -~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl  400 (461)
T d1ohwa_         335 -NAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT  400 (461)
T ss_dssp             -SSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT
T ss_pred             -ccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeE
Confidence             11223334456678888888887776632  334444555555555553    554 445655554

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.12  E-value=6.9e-10  Score=92.49  Aligned_cols=212  Identities=15%  Similarity=0.074  Sum_probs=116.1

Q ss_pred             CchHHHHHHHHHhhcCCC--ceEEecchHHHHH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC---
Q 022194           54 NPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (301)
Q Consensus        54 ~~~~~~l~~~l~~~~~~~--~~i~~~sG~~ai~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~---  127 (301)
                      .+..+++++.+++++|.+  +++++++||+|+. ++..+.++++.+++..+.|..+.... ................   
T Consensus        34 ~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  112 (340)
T d1svva_          34 DSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETG-AIEATGHKVVTAPCPDGKL  112 (340)
T ss_dssp             SHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTT-HHHHTTCCEEEECCTTSCC
T ss_pred             CHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeecc-cccccceeeeecccccccc
Confidence            355789999999999986  4566677899875 67778899999998887765543111 1111222222222221   


Q ss_pred             CHHHHHhhc---C---C-CceEEEEeCCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCccccCcc--------CC
Q 022194          128 DLDEVASAI---G---P-WTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSRPL--------EL  189 (301)
Q Consensus       128 d~~~l~~~l---~---~-~~~~v~i~~~~np~G~~~---~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~--------~~  189 (301)
                      +.+...+..   .   . ...++++..++| .|.+.   ++..+.+.|+++|.++++|+++..+......        ..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~  191 (340)
T d1svva_         113 RVADIESALHENRSEHMVIPKLVYISNTTE-VGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIAR  191 (340)
T ss_dssp             CHHHHHHHHHHSCSTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHH
T ss_pred             cchhHHHHhhhhhcccCCcceeeeeccccc-ccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccc
Confidence            222222221   1   2 233444455555 45543   4777889999999999999998643332111        11


Q ss_pred             CCcEEEecccccccCCCCceeeEEEEcchhHHHHHHHhh--hhcCCCCCHHhHHHHHccccc--HHHHHHHHHHHHHHHH
Q 022194          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSGLAPFDCWICLRGVKT--MALRVEKQQDNAQKIA  265 (301)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~l~  265 (301)
                      ..++...+..|...++   ..++........ .......  ............++....++.  .....++...++.++.
T Consensus       192 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~  267 (340)
T d1svva_         192 LTDMFYIGATKAGGMF---GEALIILNDALK-PNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILK  267 (340)
T ss_dssp             HCSEEEEECTTTTCSS---CEEEEECSGGGC-TTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHH
T ss_pred             cceeeecCCccccccc---cccccccchhhh-hhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhH
Confidence            2345565566654332   234444333222 2222222  222233333333333333332  3455567777778888


Q ss_pred             HHHHhC
Q 022194          266 EFLASH  271 (301)
Q Consensus       266 ~~l~~~  271 (301)
                      +.++..
T Consensus       268 ~~l~~~  273 (340)
T d1svva_         268 AGLEAC  273 (340)
T ss_dssp             HHHHHT
T ss_pred             HHHhcC
Confidence            888775

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.07  E-value=4.6e-10  Score=96.06  Aligned_cols=144  Identities=12%  Similarity=0.013  Sum_probs=104.3

Q ss_pred             HHHHHHHHHhhcCCCc---eEEecchHHH-HH-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           57 RDALESLLAKLDKADR---ALCFTSGMAA-LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~---~i~~~sG~~a-i~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .++.++.|+++++.++   ++++++++++ .. ++..+..+++++++..  ++.+...|..+++..|..+..+..+    
T Consensus        50 ~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~--~g~~~~~~~~~~~~~g~~~~~~~~~~~~~  127 (361)
T d2c0ra1          50 HNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVM--TGSWASKALKEAKLIGDTHVAASSEASNY  127 (361)
T ss_dssp             HHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEE--CSHHHHHHHHHHHHHSCEEEEEECGGGTT
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccCCCceEEEe--echhhhhhhhhhhhcCceeeeeccccccc
Confidence            6788899999999863   3444444444 44 4456778888887654  4445555667888888888887754    


Q ss_pred             -CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCC
Q 022194          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHS  206 (301)
Q Consensus       128 -d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~  206 (301)
                       +++.+++.+..+. .+.   .+|.||...++++|.++|+++|+++++|.+.+.+...-..+ ..|+.+.|.+|.++.++
T Consensus       128 ~~~~~~~~~~~~~~-~~~---v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~-~~di~~~s~~k~~~~~~  202 (361)
T d2c0ra1         128 MTLPKLQEIQLQDN-AAY---LHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLN-QFGLVYAGAQKNLGPSG  202 (361)
T ss_dssp             CSCCCGGGCCCCTT-EEE---EEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGG-GCSEEEEETTTTTCCSS
T ss_pred             cchhhhhhhcccCc-ceE---EEEecccceecceEEEeeccCCceEEEEeeccccccccccc-cceeEEEeccccccccc
Confidence             5667777666544 222   35678899999999999999999999999999888653332 36788888999996544


Q ss_pred             C
Q 022194          207 D  207 (301)
Q Consensus       207 g  207 (301)
                      +
T Consensus       203 ~  203 (361)
T d2c0ra1         203 V  203 (361)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.6e-09  Score=90.87  Aligned_cols=154  Identities=12%  Similarity=-0.035  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhhcCCCc--eEEe-cchHHHH-H-HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           57 RDALESLLAKLDKADR--ALCF-TSGMAAL-A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~~--~i~~-~sG~~ai-~-~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .++.++.+++++++++  .+++ ++++++. . ++..+..+++.+++....+  ....+....+..+..+......    
T Consensus        48 ~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (360)
T d1bjna_          48 AEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGY--WAASAIKEAKKYCTPNVFDAKVTVDG  125 (360)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSH--HHHHHHHHHTTTSEEEEEECEEEETT
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccccccccceecccc--hhhhhHHHHhhcCccceeeccccCCC
Confidence            6788999999999863  4454 4444554 3 4445677778777765443  3344557778888776666633    


Q ss_pred             -CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCccccCccCCCCcEEEecccccccCCC
Q 022194          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHS  206 (301)
Q Consensus       128 -d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~  206 (301)
                       +.+.++..+..+++++++.+.+|.||...+++++.  ++.+++.+++|.+.+.+...-. ..+.|+++.|.+|++++|+
T Consensus       126 ~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd-~~~~dv~~~ss~k~~~~~~  202 (360)
T d1bjna_         126 LRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPID-VSRYGVIYAGAQKNIGPAG  202 (360)
T ss_dssp             EEEECCGGGCCCCSSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSCCC-GGGCSEEEEETTTTTSSTT
T ss_pred             cchhhhhhhhccCCceeEEEecccccccCcccccee--cccccceeeeeeeccccceeee-eccceeEEEEcccccccCC
Confidence             45556666778888888888899999998877664  5678999999999887766533 3468999999999997776


Q ss_pred             CceeeEEEEcc
Q 022194          207 DVMAGVLAVKG  217 (301)
Q Consensus       207 g~~~g~~~~~~  217 (301)
                      +  +++++.++
T Consensus       203 ~--~~~~~~~~  211 (360)
T d1bjna_         203 L--TIVIVRED  211 (360)
T ss_dssp             C--EEEEEEGG
T ss_pred             C--ceeEeeeh
Confidence            5  45555543

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=98.71  E-value=6.8e-10  Score=94.79  Aligned_cols=150  Identities=13%  Similarity=-0.033  Sum_probs=96.0

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchH-HHHH--HHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCC----
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGM-AALA--AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~-~ai~--~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~----  127 (301)
                      .++.++.++++++.+  ..+++++|+ ++..  +...+.++++.|++....+.+.  .+...+...+...+.....    
T Consensus        50 ~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~  127 (360)
T d1w23a_          50 HEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSE--KALKEAKLLGETHIAASTKANSY  127 (360)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHH--HHHHHHHTTSEEEEEEECGGGTS
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhh--hhHHHHHHhhhcceeeccccccc
Confidence            678899999999986  356777775 4433  3444567788887765444333  2335556666666655543    


Q ss_pred             -CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCcccc-CccCCCCcEEEecccccccCC
Q 022194          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGH  205 (301)
Q Consensus       128 -d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~S~sK~~~g~  205 (301)
                       ..+.++..... ...   .+..|.||...|+++|.++|+++|+++++|.+++.+... +....++|++  +++|.++++
T Consensus       128 ~~~~~~~~~~~~-~~~---~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~--~~~~~k~~~  201 (360)
T d1w23a_         128 QSIPDFSEFQLN-END---AYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYA--GAQKNLGPS  201 (360)
T ss_dssp             CSCCCGGGCCCC-TTE---EEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEE--ETTTTTSCT
T ss_pred             cchhhhhhcccc-ccc---ceeEecCCccccceeeeeccccceeeEEeeccccccccccccccccceEE--eeccccccC
Confidence             23334433332 233   334566899999999999999999999999999988875 4445555555  455555344


Q ss_pred             CCceeeEEEEc
Q 022194          206 SDVMAGVLAVK  216 (301)
Q Consensus       206 ~g~~~g~~~~~  216 (301)
                      ++  +++++.+
T Consensus       202 ~~--~~~~~~~  210 (360)
T d1w23a_         202 GV--TVVIVKK  210 (360)
T ss_dssp             TC--EEEEEEH
T ss_pred             Cc--ceeeEec
Confidence            43  3555444

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.43  E-value=2.5e-06  Score=74.51  Aligned_cols=214  Identities=16%  Similarity=0.163  Sum_probs=129.7

Q ss_pred             HHHHHHHHHhhcCCC--ceEEecchH---HHHHHHHhccC-C----CCeEEEcCCCCccHHHHHhhhcccCCcEEEEecC
Q 022194           57 RDALESLLAKLDKAD--RALCFTSGM---AALAAVTHLLG-T----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (301)
Q Consensus        57 ~~~l~~~l~~~~~~~--~~i~~~sG~---~ai~~~~~~~~-~----g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~  126 (301)
                      .-+++..++++.|.+  ++-...+++   +|+.++.+..+ .    ...+.+..+.++....   ......+..++.++.
T Consensus       108 lfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  184 (471)
T d1wyub1         108 MWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNP---ATASMAGYQVREIPS  184 (471)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHH---HHHHHTTCEEEEECB
T ss_pred             HHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCccccccee---eeeecccceeecccc
Confidence            567888999999998  222334444   22333333321 1    1234555666665553   233344556666554


Q ss_pred             C-----CHHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCCcCC--ccccCccCCCCcEEEeccc
Q 022194          127 C-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS--PVLSRPLELGADIVMHSAT  199 (301)
Q Consensus       127 ~-----d~~~l~~~l~~~~~~v~i~~~~np~G~~~~l~~l~~l~~~~~~~li~D~~~~~--~~~~~~~~~~~di~~~S~s  199 (301)
                      +     +.+.++....+++.++++++|++.-+.....+++++++++.+..+++|.+-..  .....+...+.|+++...+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~  264 (471)
T d1wyub1         185 GPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLH  264 (471)
T ss_dssp             CTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTT
T ss_pred             cccccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhhccccCcccccccccccc
Confidence            3     78888888888999999999999544445699999999999998888876432  2344566678888888888


Q ss_pred             ccccCC---CCceeeEEEEcchhHHHHHH-------------------HhhhhcCCCCCHHh-----HHHHHcccccHHH
Q 022194          200 KFIAGH---SDVMAGVLAVKGERLAKELY-------------------FLQNAEGSGLAPFD-----CWICLRGVKTMAL  252 (301)
Q Consensus       200 K~~~g~---~g~~~g~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~-----~~~~~~~l~~~~~  252 (301)
                      +.|+.|   +|.-.|++.++++.. +++-                   .++....++.+...     .+....+-+-+.+
T Consensus       265 q~~G~P~~~GGP~~G~~a~~~~~~-R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~e  343 (471)
T d1wyub1         265 KTFTVPHGGGGPGSGPVGVKAHLA-PYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKK  343 (471)
T ss_dssp             TTTCCCCTTSCCCCCCEEECGGGG-GGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccceeehhhhh-ccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHH
Confidence            865333   222358888876543 2211                   00111112222221     1122233344666


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcc
Q 022194          253 RVEKQQDNAQKIAEFLASHPRVK  275 (301)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~v~  275 (301)
                      .-++..+++.++++.|+. +++.
T Consensus       344 lA~~~~~~A~Yla~~L~~-~G~~  365 (471)
T d1wyub1         344 AAALAVLNARYLKELLKE-KGYR  365 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTCB
T ss_pred             HHHHHHHHHHHHHHHHhh-cCce
Confidence            678889999999999976 4543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.13  E-value=1.7  Score=31.86  Aligned_cols=92  Identities=13%  Similarity=0.049  Sum_probs=54.0

Q ss_pred             EEecchHHHH--HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCCC
Q 022194           74 LCFTSGMAAL--AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (301)
Q Consensus        74 i~~~sG~~ai--~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~np  151 (301)
                      |++++||.-+  ..+..+++.|.+|.+..-.-...     ......++++...+..|.+.+++++.+ ..+|+......+
T Consensus         6 IlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~-----~~~~~~~~~~~~gD~~d~~~l~~al~~-~d~vi~~~g~~~   79 (205)
T d1hdoa_           6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL-----PSEGPRPAHVVVGDVLQAADVDKTVAG-QDAVIVLLGTRN   79 (205)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS-----CSSSCCCSEEEESCTTSHHHHHHHHTT-CSEEEECCCCTT
T ss_pred             EEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc-----ccccccccccccccccchhhHHHHhcC-CCEEEEEeccCC
Confidence            4555655333  46666788888776542211111     223456788999999999999999975 444444322221


Q ss_pred             ccccc-----cHHHHHHHHHHcCCE
Q 022194          152 RQQIC-----DIRKIAEMAHAHGAL  171 (301)
Q Consensus       152 ~G~~~-----~l~~l~~l~~~~~~~  171 (301)
                      .....     -...+++.++++++.
T Consensus        80 ~~~~~~~~~~~~~~l~~aa~~~~v~  104 (205)
T d1hdoa_          80 DLSPTTVMSEGARNIVAAMKAHGVD  104 (205)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHTCC
T ss_pred             chhhhhhhHHHHHHHHHHHHhcCCC
Confidence            11111     145688888888864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.14  E-value=1.1  Score=34.38  Aligned_cols=84  Identities=19%  Similarity=0.192  Sum_probs=50.1

Q ss_pred             ceEEecchHHHH--HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEe--cCCCHHHHHhhcC------CCce
Q 022194           72 RALCFTSGMAAL--AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV--NTCDLDEVASAIG------PWTK  141 (301)
Q Consensus        72 ~~i~~~sG~~ai--~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~--~~~d~~~l~~~l~------~~~~  141 (301)
                      ..+++|+|+..|  .....+.+.|-+|++.+-.-....+..+.+.+..|.++..+  +..|.+++++.++      .++.
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   85 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLD   85 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            567788887776  46677889999988865432222222334445555555444  4557777666654      3677


Q ss_pred             EEEEeCCCCCcccc
Q 022194          142 LVWVESPTNPRQQI  155 (301)
Q Consensus       142 ~v~i~~~~np~G~~  155 (301)
                      +++-+....+.+.+
T Consensus        86 iLVnnAG~~~~~~~   99 (251)
T d1vl8a_          86 TVVNAAGINRRHPA   99 (251)
T ss_dssp             EEEECCCCCCCCCG
T ss_pred             EEEECCCCCCCCCh
Confidence            76655444444444

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.90  E-value=1.9  Score=28.29  Aligned_cols=93  Identities=12%  Similarity=0.049  Sum_probs=58.0

Q ss_pred             CceEEecchHHHHHHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcCCCceEEEEeCCCC
Q 022194           71 DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (301)
Q Consensus        71 ~~~i~~~sG~~ai~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~v~i~~~~n  150 (301)
                      ..++++++|..|...+..+++.|-.|.+.++....-..   ......+++...-.. +.++++     ...+|+....+.
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~---~~~~~~~i~~~~~~~-~~~dl~-----~~~lv~~at~d~   83 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT---VWANEGMLTLVEGPF-DETLLD-----SCWLAIAATDDD   83 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH---HHHTTTSCEEEESSC-CGGGGT-----TCSEEEECCSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH---HHHhcCCceeeccCC-CHHHhC-----CCcEEeecCCCH
Confidence            36888999998888888888888888877776654432   334444555443332 223332     344555442221


Q ss_pred             CccccccHHHHHHHHHHcCCEE-EEeCC
Q 022194          151 PRQQICDIRKIAEMAHAHGALL-LVDNS  177 (301)
Q Consensus       151 p~G~~~~l~~l~~l~~~~~~~l-i~D~~  177 (301)
                           .--.++.+.|++.++++ ++|+.
T Consensus        84 -----~~n~~i~~~a~~~~ilVNv~D~p  106 (113)
T d1pjqa1          84 -----TVNQRVSDAAESRRIFCNVVDAP  106 (113)
T ss_dssp             -----HHHHHHHHHHHHTTCEEEETTCT
T ss_pred             -----HHHHHHHHHHHHcCCEEEeCCCh
Confidence                 11357999999999998 55543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=81.95  E-value=1.9  Score=32.82  Aligned_cols=81  Identities=10%  Similarity=0.035  Sum_probs=46.3

Q ss_pred             eEEecchHHHH--HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEec--CCCHHHHHhhcC------CCceE
Q 022194           73 ALCFTSGMAAL--AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN--TCDLDEVASAIG------PWTKL  142 (301)
Q Consensus        73 ~i~~~sG~~ai--~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~--~~d~~~l~~~l~------~~~~~  142 (301)
                      ++++|+|+..|  .....+++.|-+|++..-.-....+.+...++..+.++..+.  ..|.+++++.++      .++.+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDV   82 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence            67888888776  466778899988876432222222222333444555665554  447777666554      35666


Q ss_pred             EEEeCCCCCcc
Q 022194          143 VWVESPTNPRQ  153 (301)
Q Consensus       143 v~i~~~~np~G  153 (301)
                      ++-+....+.+
T Consensus        83 LVnnAg~~~~~   93 (244)
T d1edoa_          83 VVNNAGITRDT   93 (244)
T ss_dssp             EEECCCCCCCC
T ss_pred             ccccccccccc
Confidence            65443333333

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.51  E-value=3.5  Score=31.30  Aligned_cols=85  Identities=7%  Similarity=0.048  Sum_probs=48.8

Q ss_pred             hcCCC-ceEEecchHHHH--HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEe--cCCCHHHHHhhcC----
Q 022194           67 LDKAD-RALCFTSGMAAL--AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV--NTCDLDEVASAIG----  137 (301)
Q Consensus        67 ~~~~~-~~i~~~sG~~ai--~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~--~~~d~~~l~~~l~----  137 (301)
                      +|..+ .++++|+|+..|  .....+.+.|.+|++.+-.-....... .-++..|.++..+  +..|.+++++.++    
T Consensus         5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~-~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   83 (251)
T d2c07a1           5 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVV-DEIKSFGYESSGYAGDVSKKEEISEVINKILT   83 (251)
T ss_dssp             CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHH-HHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            45555 578888888776  356778899988887654322222222 2234445444444  4447777766654    


Q ss_pred             --CCceEEEEeCCCCCc
Q 022194          138 --PWTKLVWVESPTNPR  152 (301)
Q Consensus       138 --~~~~~v~i~~~~np~  152 (301)
                        ..+.+++-+....+.
T Consensus        84 ~~g~iDilvnnag~~~~  100 (251)
T d2c07a1          84 EHKNVDILVNNAGITRD  100 (251)
T ss_dssp             HCSCCCEEEECCCCCCC
T ss_pred             hcCCceeeeeccccccc
Confidence              366666654443333

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=80.79  E-value=3.5  Score=31.28  Aligned_cols=84  Identities=10%  Similarity=0.096  Sum_probs=49.2

Q ss_pred             ceEEecchHHHH--HHHHhccCCCCeEEEcCCCCccHHHHHhhhcccCCcEEEEecCCCHHHHHhhcC------CCceEE
Q 022194           72 RALCFTSGMAAL--AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLV  143 (301)
Q Consensus        72 ~~i~~~sG~~ai--~~~~~~~~~g~~Vlv~~~~y~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~------~~~~~v  143 (301)
                      ..+++|+|+..|  .....+.+.|.+|++.+-.-.......+.+.....+.....+..|.+++++.++      ..+.++
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL   86 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTL   86 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCceEE
Confidence            577888888776  356778889999887654322222222222222345555666667777766654      366766


Q ss_pred             EEeCCCCCcccc
Q 022194          144 WVESPTNPRQQI  155 (301)
Q Consensus       144 ~i~~~~np~G~~  155 (301)
                      +-+....+.+.+
T Consensus        87 VnnAg~~~~~~~   98 (251)
T d1zk4a1          87 VNNAGIAVNKSV   98 (251)
T ss_dssp             EECCCCCCCCCT
T ss_pred             Eeccccccccch
Confidence            655444444444