Citrus Sinensis ID: 022202

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MHCEIVWLRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Secondary Structure (PSIPRED)
cccccHHHHHccccccccEEEEEEEEEcccccEEEEEEccccccccccEEEEEEEccccccEEEEEEccccccccccccEEEEEEccEEccEEEEEcccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEEEEcccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEcccccEEEcccccEEEEccccccccccccccEEEEEEEccccEEEEEccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccccccEEEEEEEEccccccEEEEcccccHccccccEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEccccccccccccccccccEEccccccccccccccEEEEEEEEEccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEEcccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MHCEIVWLrilqpgprdyLLQCFIkrnrstqtYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLhsddmskgsstylgklrsnflgtkfivydgqpphagakmtrsrSTRLanlkqvspripfgnysVAHISYELNvlgsrgprrmqcvmdsipasaiesggvaptqteflfsnadsfpsipffrsksnrsekflsgplacqkdgalvlrnkaprWHEQLQCWCLNFHGRVTVASVKNfqlvaspengpagleHEKIILQFGkvgkdlftmdyrypISAFQAFAICLSSfdtkiace
Flexible Loop (DISEMBL)
mhceivwlrilqpgprDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIislhsddmskgSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTrlanlkqvspripfgnySVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Low Complexity Region (SEG)
MHCEIVWLRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Disordered region (IsUnstruct)
**CEIVWLRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDM***SSTYLGKLRSNFLGTKFIVYDG**********************VSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPA*AI****VAPTQTEFLFSNADSFPSIPFF*********FLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKI***
Disordered Region (DISOPRED)
*HCEIVWLRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHA************************GNYSVAHISYELNVLGSRGPRRM********************************************************KDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Disordered Region (DISEMBL)
MHCEIVWLRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPH*********STRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Disordered Region (DISPRO)
*HCEIVWLRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHA**********RLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAI***GV***************************************KDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIAC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHCEIVWLRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q10LG8	403	Tubby-like F-box protein	no	no	0.973	0.727	0.738	1e-129
Q8VY21	406	Tubby-like F-box protein	yes	no	0.976	0.724	0.763	1e-125
Q8H485	406	Tubby-like F-box protein	no	no	0.973	0.721	0.693	1e-121
Q9SQU1	380	Tubby-like F-box protein	no	no	0.936	0.742	0.646	1e-101
Q6NPQ1	389	Tubby-like F-box protein	no	no	0.923	0.714	0.628	1e-100
Q75HX5	445	Tubby-like F-box protein	no	no	0.976	0.660	0.570	1e-98
Q6Z2G9	428	Tubby-like F-box protein	no	no	0.956	0.672	0.593	4e-96
Q2QXB2	445	Tubby-like F-box protein	no	no	0.963	0.651	0.549	1e-94
Q8LJA9	448	Tubby-like F-box protein	no	no	0.963	0.647	0.546	8e-94
Q7XSV4	462	Tubby-like F-box protein	no	no	0.963	0.627	0.529	2e-93

>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1

 Score =  461 bits (1187), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/294 (73%), Positives = 248/294 (84%), Gaps = 1/294 (0%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + QPGPRD  L+CFI+RNR+TQTY+LY+ LT ALADDGKFLLAARKCR+ TCTDY+IS
Sbjct: 111 ISLKQPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLIS 170

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L   DMSKGS+TY+GKLRSNFLGTKF VYD  PP+ GA +++SRS R+  L QVSPR+P 
Sbjct: 171 LDMSDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSARVVGLNQVSPRVPA 230

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           GNY V+HISYELNVLG+RGPRRM C+MDSIP SA++ GG APTQTEF  S  DSFPSI F
Sbjct: 231 GNYPVSHISYELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSGLDSFPSISF 290

Query: 188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
           FRSKS R +   S  L+ QK+  LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA
Sbjct: 291 FRSKSARIDSATS-QLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVA 349

Query: 248 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           S ENGP   E +K+ILQFGK+GKDLFTMDYRYPISAFQ+FAICLSSFDTKIACE
Sbjct: 350 SDENGPTNQEQDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 403

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1

 Score =  449 bits (1154), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/296 (76%), Positives = 256/296 (86%), Gaps = 2/296 (0%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALA-DDGKFLLAARKCRRATCTDYII 66
           + + QPGPR  L+QC+I RNRS QTY+LYL L  A + DDGKFLLAA++ RR TCTDYII
Sbjct: 111 ISLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYII 170

Query: 67  SLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIP 126
           SL+ DD+S+GS+TY+GKLRSNFLGTKF VYD QP + G ++TR+RS+RL +LKQVSPRIP
Sbjct: 171 SLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIP 230

Query: 127 FGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIP 186
            GNY VAHISYELNVLGSRGPRRMQCVMD+IPASA+E GG APTQTE + SN DSFPS  
Sbjct: 231 SGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFS 290

Query: 187 FFRSKSNRSEKFLSGP-LACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQL 245
           FFRSKS R+E   SGP  A QK+G LVL+NKAPRWHEQLQCWCLNF+GRVTVASVKNFQL
Sbjct: 291 FFRSKSIRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQL 350

Query: 246 VASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           VA+PENGPAG EHE +ILQFGKVGKD+FTMDY+YPISAFQAF ICLSSFDTKIACE
Sbjct: 351 VAAPENGPAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 406

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1

 Score =  434 bits (1117), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/294 (69%), Positives = 238/294 (80%), Gaps = 1/294 (0%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + QPGPRD  ++CFI RNR+TQTY+LY+ LT+AL DDGKFLLAARKCRR TCT+Y+IS
Sbjct: 114 ISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCRRTTCTEYLIS 173

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L  +D+SK + +Y+GKLRSNFLGTKF +YD  PP+AG  +++ +S R+     +SPRIP 
Sbjct: 174 LDMNDISKRTDSYVGKLRSNFLGTKFTIYDAHPPYAGDVISKGQSARVIGSNHLSPRIPA 233

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           GNY V+HISYELNVLGSRGPRRM C MDSIP SAIE GG APTQTEF  S  +SF SIPF
Sbjct: 234 GNYPVSHISYELNVLGSRGPRRMHCAMDSIPVSAIEQGGTAPTQTEFPLSYHESFTSIPF 293

Query: 188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
           F+SKS R+    +  L  Q    LVL+NK+PRWHE LQCWCLNFHGRVTVASVKNFQLVA
Sbjct: 294 FKSKSVRANNS-TASLLTQNGSKLVLKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVA 352

Query: 248 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           S E+ P   EH+ +ILQFGKVGKD+FTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 353 SDESNPTNQEHDDVILQFGKVGKDMFTMDYRYPISAFQAFAICLSSFDTKIACE 406

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SQU1|TLP9_ARATH Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1

 Score =  369 bits (948), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/300 (64%), Positives = 228/300 (76%), Gaps = 18/300 (6%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + Q GPRD L+QCFIKRNR+TQ+YHLYL LT +L D+GKFLLAA K +RATCTDYIIS
Sbjct: 93  ISLKQSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIIS 152

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L SDD+SK S+ YLG++RSNFLGTKF V+DG    A AKM +SRS+   N  +VSPR+P 
Sbjct: 153 LRSDDISKRSNAYLGRMRSNFLGTKFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQ 208

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           G+Y +AHISYELNVLGSRGPRRM+C+MD+IP S +ES GV  + +   FS+     S P 
Sbjct: 209 GSYPIAHISYELNVLGSRGPRRMRCIMDTIPMSIVESRGVVASTSISSFSSR----SSPV 264

Query: 188 FRSKSNRSEKFLSGPLACQKDG------ALVLRNKAPRWHEQLQCWCLNFHGRVTVASVK 241
           FRS    S+   S   +C   G       LVL NKAPRWHEQL+CWCLNFHGRVTVASVK
Sbjct: 265 FRS---HSKPLRSNSASCSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVK 321

Query: 242 NFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           NFQLVA   +  AG   E+IILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct: 322 NFQLVAV-SDCEAGQTSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 380

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to ABA during seed germination and early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPQ1|TLP11_ARATH Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/299 (62%), Positives = 221/299 (73%), Gaps = 21/299 (7%)

Query: 12  QPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSD 71
           QPGPRD L+QCFIKRNR TQ+YHLYL LTN+L DDGKFLLAA K +  TCTDYIISL SD
Sbjct: 103 QPGPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSD 162

Query: 72  DMSKGSSTYLGKLRSNFLGTKFIVYDGQ--PPHAGAKMTRSRSTRLANLKQVSPRIPFGN 129
           DMS+ S  Y+GK+RSNFLGTKF V+DG   P    AK+ +SRS    N  +VS ++P G+
Sbjct: 163 DMSRRSQAYVGKVRSNFLGTKFTVFDGNLLPSTGAAKLRKSRS---YNPAKVSAKVPLGS 219

Query: 130 YSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFR 189
           Y VAHI+YELNVLGSRGPR+MQC+MD+IP S +E  GVA   +EF              R
Sbjct: 220 YPVAHITYELNVLGSRGPRKMQCLMDTIPTSTMEPQGVASEPSEFPLLGT---------R 270

Query: 190 SKSNRSE-KFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS 248
           S  +RS+ K L    +  K+  LVL NK PRWHEQL+CWCLNFHGRVTVASVKNFQLVA+
Sbjct: 271 STLSRSQSKPLRSSSSHLKETPLVLSNKTPRWHEQLRCWCLNFHGRVTVASVKNFQLVAA 330

Query: 249 PENGPAGL------EHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
             +  +G       + E+IILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct: 331 GASCGSGTGMSPERQSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 389

Arabidopsis thaliana (taxid: 3702)

>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1

 Score =  359 bits (922), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 187/328 (57%), Positives = 234/328 (71%), Gaps = 34/328 (10%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYII 66
           L + QPGPRD ++QCFIKR++S  TYHLYL L+ A LAD GKFLL+A++ R+ TCT+Y+I
Sbjct: 118 LSLKQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVI 177

Query: 67  SLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKM-TRSRSTRLANLKQVSPRI 125
           S+ +D++S+ SSTY+GKLRSNFLGTKFI+YD QP + GA +    RS+R  N K+VSP++
Sbjct: 178 SMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFNSKKVSPKM 237

Query: 126 PFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA--DSFP 183
           P G+Y++A ++YELNVLG+RGPRRM CVM SIPAS++E GG+ P Q E +   A  +SF 
Sbjct: 238 PSGSYNIAQVTYELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEESFR 297

Query: 184 SIPFFRSKS--NRS--------------EKFLSGPLACQKDGA-----LVLRNKAPRWHE 222
           S   F   S  +RS                   G +   ++G      LVLRNKAPRWHE
Sbjct: 298 STTSFSKSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNKAPRWHE 357

Query: 223 QLQCWCLNFHGRVTVASVKNFQLV---------ASPENGPAGLEHEKIILQFGKVGKDLF 273
           QLQCWCLNF GRVT+ASVKNFQL+         A   + PA  E +KIILQFGKV KD+F
Sbjct: 358 QLQCWCLNFRGRVTIASVKNFQLIAAPAQPPAGAPTPSQPAPPEQDKIILQFGKVAKDMF 417

Query: 274 TMDYRYPISAFQAFAICLSSFDTKIACE 301
           TMDYRYP+SAFQAFAICLSSFDTK+ACE
Sbjct: 418 TMDYRYPLSAFQAFAICLSSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1

 Score =  351 bits (900), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 178/300 (59%), Positives = 218/300 (72%), Gaps = 12/300 (4%)

Query: 12  QPGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGKFLLAARKCRRATCTDYIISLHS 70
           QPGPR++ +QCF++R+R+T TY LYL L+ +L  ++ K LLAARK RRAT T ++ISL S
Sbjct: 131 QPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRATRTSFVISLVS 190

Query: 71  DDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNY 130
           +D S  SSTY+GKL+ NFLGTKF ++D QPP     +  +R ++  + KQVSPR+P GNY
Sbjct: 191 NDFSLSSSTYVGKLKPNFLGTKFTIFDSQPPCDAVVLPNNRPSK-RHFKQVSPRLPLGNY 249

Query: 131 SVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSI----- 185
           +VA +SYEL VL +RGPRRMQC M SIPA  I+ GG APT T  + S  +  P++     
Sbjct: 250 NVATVSYELTVLRNRGPRRMQCTMHSIPALCIQEGGKAPTPTGIIHSLDEQVPALSTSKG 309

Query: 186 --PFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNF 243
             P     S      LSGP+ C  +  LVL+NKAPRWHEQLQCWCLNF GRVTVASVKNF
Sbjct: 310 KEPAIEFSSTSLSADLSGPV-CTNEVPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNF 368

Query: 244 QLVAS--PENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           QLVAS  P  G    E EK+ILQFGK+GKD+FTMDYRYP+SAFQAFAICL+SFDTK ACE
Sbjct: 369 QLVASVDPSLGIPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 428

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1

 Score =  346 bits (887), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 178/324 (54%), Positives = 232/324 (71%), Gaps = 34/324 (10%)

Query: 12  QPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHS 70
           QPGPR+  +QCFIKR++STQTY+LYL L++A L + GKFLL+A++  RATCT+Y I + +
Sbjct: 122 QPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSA 181

Query: 71  DDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRS-RSTRLANLKQVSPRIPFGN 129
           D+ S+ S+ Y+GKLRSN LGTKF++YD QPP   A +++S +++R    ++VSP+ P   
Sbjct: 182 DNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSST 241

Query: 130 YSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA--DSFPSIPF 187
           YS+A +SYELNVLG+RGPRRM CVM SIPAS++E+GG  P Q + + + +  +SF SI F
Sbjct: 242 YSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDESFGSISF 301

Query: 188 FRSK-SNRSEKFLS---------GPLAC---------QKDGALVLRNKAPRWHEQLQCWC 228
            +S   +RS +F S         GP+            K+  L+LRNKAPRWHEQLQCWC
Sbjct: 302 SKSSIMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCWC 361

Query: 229 LNFHGRVTVASVKNFQLVASPENGPAGL-----------EHEKIILQFGKVGKDLFTMDY 277
           LNF GRVTVASVKNFQLVA+ +                 +H+K+ILQFGKV KD+FTMDY
Sbjct: 362 LNFKGRVTVASVKNFQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQFGKVAKDMFTMDY 421

Query: 278 RYPISAFQAFAICLSSFDTKIACE 301
           RYP+SAFQAFAICLSSFDTK+ACE
Sbjct: 422 RYPLSAFQAFAICLSSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LJA9|TLP3_ORYSJ Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1

 Score =  343 bits (880), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 181/331 (54%), Positives = 229/331 (69%), Gaps = 41/331 (12%)

Query: 10  ILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGKFLLAARKCRRATCTDYIISL 68
           I QPGPRD ++QC+IKRNRS  TYHLYL L+N + A+ GKF+LAA++ R+ TCT+Y IS+
Sbjct: 120 IKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISM 179

Query: 69  HSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTR-SRSTRLANLKQVSPRIPF 127
            S ++S+ S T +GKLRSNFLGTKFI+YD QPP+ GA +    R+++  N  +VSP++P 
Sbjct: 180 VSGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPS 239

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA--DSFPSI 185
             Y++A +SYELNVLG+RGPRRM+C+M SIPAS++E GG+ P Q E +   A  DSF S 
Sbjct: 240 VTYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDSFRST 299

Query: 186 PFF----RSKSNRSEKFL--------------SGPLACQKDGA------LVLRNKAPRWH 221
             F    RS ++ S+  +              SG +    D        LVLRNK PRWH
Sbjct: 300 TSFSQSFRSTTSFSKSIMDPSMDFSSARFSDISGSIMGGDDNGEIKERPLVLRNKPPRWH 359

Query: 222 EQLQCWCLNFHGRVTVASVKNFQLV-----------ASPENGPAGLEHEKIILQFGKVGK 270
           EQLQCWCLNF GRVT+ASVKNFQLV              + GPA  + EK+ILQFGKV +
Sbjct: 360 EQLQCWCLNFRGRVTIASVKNFQLVAAPSPPPAGAPTPSQPGPA--DPEKVILQFGKVAR 417

Query: 271 DLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           D+FTMDYRYP+SAFQAFAICLSSFDTK+ACE
Sbjct: 418 DMFTMDYRYPLSAFQAFAICLSSFDTKLACE 448

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XSV4|TLP7_ORYSJ Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1

 Score =  342 bits (877), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 182/344 (52%), Positives = 231/344 (67%), Gaps = 54/344 (15%)

Query: 12  QPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADD-GKFLLAARKCRRATCTDYIISLHS 70
           QPGPRD ++QCFIKR++S  TYHLYL L++A+ D+ GKFLL+A++ RR T TDYIIS+ S
Sbjct: 119 QPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVLDETGKFLLSAKRSRRTTHTDYIISMDS 178

Query: 71  DDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKM-TRSRSTRLANLKQVSPRIPFGN 129
            ++S+ SS Y+GKLRSNFLGTKFI+YD QPP+    + ++ R++R  + ++VSP++P G 
Sbjct: 179 KNISRSSSGYIGKLRSNFLGTKFIIYDTQPPYNARTLCSQERTSRRFSSRKVSPKVPTGC 238

Query: 130 YSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSN--ADSFPSIPF 187
           Y +  ++YELNVLG+RGPRRMQC M SIPASA+E GG+ P Q + L      +SF S+  
Sbjct: 239 YPIVQVNYELNVLGTRGPRRMQCAMHSIPASAVEPGGIVPGQPKELLPRLFEESFRSMAT 298

Query: 188 FRSK-----------SNRSEKFLSGPLACQ----------KDGALVLRNKAPRWHEQLQC 226
             SK           S+R  +F  G L  Q          K+  LVLRNKAPRWHEQLQC
Sbjct: 299 SFSKYSITDHSTDFSSSRFSEFGGGALQGQEQEQDGDDVNKERPLVLRNKAPRWHEQLQC 358

Query: 227 WCLNFHGRVTVASVKNFQLVAS---PENGPAG--------------------------LE 257
           WCLNF GRVTVASVKNFQL+A+   P +G A                             
Sbjct: 359 WCLNFRGRVTVASVKNFQLIAAAPQPSSGAASEPSQAGQAAQQQTQPSQPSSSSSSSSSN 418

Query: 258 HEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           H+ +ILQFGKV KD+FTMDYRYP+SAFQAFAICL+SFDTK+ACE
Sbjct: 419 HDTVILQFGKVAKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 462

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
255551637	390	phosphoric diester hydrolase, putative [	0.976	0.753	0.840	1e-147
356555565	385	PREDICTED: tubby-like F-box protein 6-li	0.976	0.763	0.826	1e-145
356549056	389	PREDICTED: tubby-like F-box protein 6-li	0.976	0.755	0.823	1e-144
297736916	350	unnamed protein product [Vitis vinifera]	0.976	0.84	0.829	1e-143
225432392	374	PREDICTED: tubby-like F-box protein 6-li	0.976	0.786	0.829	1e-143
224107205	395	f-box family protein [Populus trichocarp	0.976	0.744	0.828	1e-143
118486104	392	unknown [Populus trichocarpa]	0.976	0.75	0.816	1e-142
357447461	393	Tubby-like F-box protein [Medicago trunc	0.976	0.748	0.814	1e-141
302399101	392	TLP domain class transcription factor [M	0.976	0.75	0.806	1e-140
225436797	405	PREDICTED: tubby-like F-box protein 3-li	0.976	0.725	0.799	1e-139

>gi|255551637|ref|XP_002516864.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223543952|gb|EEF45478.1| phosphoric diester hydrolase, putative [Ricinus communis]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/294 (84%), Positives = 267/294 (90%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + QPGPRD+LLQCFIKR RSTQTY+LYLSLTNAL DDGK LLAARKCRR TCTDYIIS
Sbjct: 97  ISVKQPGPRDFLLQCFIKRCRSTQTYYLYLSLTNALTDDGKLLLAARKCRRTTCTDYIIS 156

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L +DDMSKGSSTY+GKLRSNFLGTKF V+DGQPPHAGAKM +SRSTRL NLKQVSPR+P 
Sbjct: 157 LDADDMSKGSSTYVGKLRSNFLGTKFTVFDGQPPHAGAKMMKSRSTRLVNLKQVSPRVPA 216

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           GNY +AH+SYELNVLGSRGPRRMQCVMD+IPA++I  GG APTQTEF   + D  PS+PF
Sbjct: 217 GNYPIAHMSYELNVLGSRGPRRMQCVMDAIPATSIGPGGTAPTQTEFAHHSVDILPSLPF 276

Query: 188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
           FRSKSN  E FLSGPL+ QKDGAL+L+NK+PRWHEQLQCWCLNFHGRVTVASVKNFQLVA
Sbjct: 277 FRSKSNCVENFLSGPLSSQKDGALILKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 336

Query: 248 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           SPENGP G EHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 337 SPENGPPGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555565|ref|XP_003546101.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max]

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/294 (82%), Positives = 266/294 (90%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + QPGPR+ LL+CFIKRNRS+QTY+LYLSLTN LA+DGKFLLAARKCRR TCTDYIIS
Sbjct: 92  ISVKQPGPRENLLRCFIKRNRSSQTYYLYLSLTNTLAEDGKFLLAARKCRRPTCTDYIIS 151

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L +DDMSKGS++Y+GKLRSNFLGTKF +YDGQPPHAGAK+ +SRSTRL NLKQVSP++P 
Sbjct: 152 LDADDMSKGSNSYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVNLKQVSPKVPT 211

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           GNY VAHISYELNVLGSRGPRRM CVMDSIPA+AIE GGVAP QTEF  +N D FPS PF
Sbjct: 212 GNYPVAHISYELNVLGSRGPRRMHCVMDSIPAAAIEPGGVAPVQTEFSLNNIDMFPSFPF 271

Query: 188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
           FRSKSNR E  +SGPL  QKDG LVL+NKAPRWHEQLQCWCLNFHGRVT+ASVKNFQLVA
Sbjct: 272 FRSKSNRVENSVSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVA 331

Query: 248 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           S EN PAG EH+KIILQFGKVGKDLFTMDYR+PISAFQAFAICLSSFDTKIACE
Sbjct: 332 SAENRPAGPEHDKIILQFGKVGKDLFTMDYRFPISAFQAFAICLSSFDTKIACE 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549056|ref|XP_003542914.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/294 (82%), Positives = 266/294 (90%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + QPGPR+ LL+CFIKRNRSTQTY+L+LSLT+ LA+DGKFLLAARKCRR TCTDYIIS
Sbjct: 96  ISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTSTLAEDGKFLLAARKCRRPTCTDYIIS 155

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L +DDMSKGS++Y+GKLRSNFLGTKF +YD Q PH GAK+ +SRSTRL NLKQVSP++P 
Sbjct: 156 LDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQLPHTGAKIMKSRSTRLVNLKQVSPKVPT 215

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           GNY VAHISYELNVLGSRGPRRM CVMDSIPA+AIE GGVAPTQTEF  +N D FPS PF
Sbjct: 216 GNYPVAHISYELNVLGSRGPRRMHCVMDSIPATAIEPGGVAPTQTEFSLNNIDMFPSFPF 275

Query: 188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
           FRSKSNR+E  +SGPL  QKDG LVL+NKAPRWHEQLQCWCLNFHGRVT+ASVKNFQLVA
Sbjct: 276 FRSKSNRAENSMSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVA 335

Query: 248 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           S ENGPAG EH+KIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 336 SAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736916|emb|CBI26117.3| unnamed protein product [Vitis vinifera]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/294 (82%), Positives = 264/294 (89%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + QPGPR+ LL+CFIKRNRS QTY+LYLSLTNAL +DGKFLLAARK RR TCTDYIIS
Sbjct: 57  ISVKQPGPRESLLKCFIKRNRSAQTYYLYLSLTNALTEDGKFLLAARKYRRTTCTDYIIS 116

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L++DDMSKGSSTY+GKLRSNFLGTKF VYDGQPPH+GAK+ R+RSTRL  LKQVSPR+P 
Sbjct: 117 LYADDMSKGSSTYIGKLRSNFLGTKFTVYDGQPPHSGAKIMRNRSTRLVGLKQVSPRVPA 176

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           G+Y VAHISYE+NVLGSRGPRRMQC MDSIPASAIE GGV PTQTE   SN D FPS  F
Sbjct: 177 GSYPVAHISYEVNVLGSRGPRRMQCSMDSIPASAIEPGGVTPTQTEIRLSNPDVFPSFSF 236

Query: 188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
           FRSKS+  E  LS PLA +KDGALVL+NKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA
Sbjct: 237 FRSKSHSVENSLSEPLADKKDGALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 296

Query: 248 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           SPE+GPAG +HEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 297 SPEDGPAGQQHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432392|ref|XP_002276906.1| PREDICTED: tubby-like F-box protein 6-like [Vitis vinifera]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/294 (82%), Positives = 264/294 (89%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + QPGPR+ LL+CFIKRNRS QTY+LYLSLTNAL +DGKFLLAARK RR TCTDYIIS
Sbjct: 81  ISVKQPGPRESLLKCFIKRNRSAQTYYLYLSLTNALTEDGKFLLAARKYRRTTCTDYIIS 140

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L++DDMSKGSSTY+GKLRSNFLGTKF VYDGQPPH+GAK+ R+RSTRL  LKQVSPR+P 
Sbjct: 141 LYADDMSKGSSTYIGKLRSNFLGTKFTVYDGQPPHSGAKIMRNRSTRLVGLKQVSPRVPA 200

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           G+Y VAHISYE+NVLGSRGPRRMQC MDSIPASAIE GGV PTQTE   SN D FPS  F
Sbjct: 201 GSYPVAHISYEVNVLGSRGPRRMQCSMDSIPASAIEPGGVTPTQTEIRLSNPDVFPSFSF 260

Query: 188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
           FRSKS+  E  LS PLA +KDGALVL+NKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA
Sbjct: 261 FRSKSHSVENSLSEPLADKKDGALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 320

Query: 248 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           SPE+GPAG +HEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 321 SPEDGPAGQQHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107205|ref|XP_002314408.1| f-box family protein [Populus trichocarpa] gi|222863448|gb|EEF00579.1| f-box family protein [Populus trichocarpa]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/297 (82%), Positives = 266/297 (89%), Gaps = 3/297 (1%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + QPGPR+ LLQCFIKR RSTQTY LYLSL NAL +DGKFLLAARKCRR TCTDYIIS
Sbjct: 99  ISVKQPGPREQLLQCFIKRCRSTQTYRLYLSLNNALTEDGKFLLAARKCRRPTCTDYIIS 158

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L +DDMSKGS+TY GKLRSNFLGTKF V+DGQPPHAGAKMT+S S+RL NLKQVSPR+P 
Sbjct: 159 LDTDDMSKGSNTYAGKLRSNFLGTKFTVFDGQPPHAGAKMTKSYSSRLVNLKQVSPRVPT 218

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           GNY VA+ISYELNVLGSRGPRRM C+MD+IPA+AIE GGVAPTQTEF   +AD FPS+ F
Sbjct: 219 GNYPVANISYELNVLGSRGPRRMHCIMDAIPAAAIEPGGVAPTQTEFYHHSADFFPSLLF 278

Query: 188 FRSKSNRSEK---FLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQ 244
           FRSKSNR E+   F SGPL+ Q++GALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQ
Sbjct: 279 FRSKSNRVERVESFQSGPLSSQREGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQ 338

Query: 245 LVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           LVAS ENGPAG EHE IILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 339 LVASQENGPAGPEHENIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486104|gb|ABK94895.1| unknown [Populus trichocarpa]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/294 (81%), Positives = 261/294 (88%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + QPGPRD+LLQCFIKR RS QTY LYL L NAL +DGKFLLAARKCRR TCTDYIIS
Sbjct: 99  ISVKQPGPRDFLLQCFIKRCRSAQTYRLYLGLNNALTEDGKFLLAARKCRRPTCTDYIIS 158

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L +DDMSKGS+ Y+GKLRSNFLGTKF V+DGQPPHAGAKMT+SRS+RL NLKQVSPR+P 
Sbjct: 159 LDTDDMSKGSNAYVGKLRSNFLGTKFTVFDGQPPHAGAKMTKSRSSRLVNLKQVSPRVPT 218

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           GNY VA ISYELNVLGSRGPRRM C+MD+IPASAIE GG+APTQTEF   N D  PS+PF
Sbjct: 219 GNYPVASISYELNVLGSRGPRRMHCIMDAIPASAIEPGGIAPTQTEFSHHNVDFLPSLPF 278

Query: 188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
           FRSKS+R E F SG L+ Q++ ALVL+NKAPRWHEQLQCWCLNFHGRVTVASVKNFQLV 
Sbjct: 279 FRSKSSRVESFQSGSLSSQRERALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVV 338

Query: 248 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           SPENGPAG EHE IILQFGKVGKDLFTMDYRYPISAFQAFA+CLSSFDTKIACE
Sbjct: 339 SPENGPAGPEHENIILQFGKVGKDLFTMDYRYPISAFQAFALCLSSFDTKIACE 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447461|ref|XP_003594006.1| Tubby-like F-box protein [Medicago truncatula] gi|355483054|gb|AES64257.1| Tubby-like F-box protein [Medicago truncatula]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/296 (81%), Positives = 265/296 (89%), Gaps = 2/296 (0%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + QPGPR+ LLQCFIKRNRSTQTY+L+LSLT++L DDGKFLLAARKCRR TCTDYIIS
Sbjct: 98  ISVKQPGPRENLLQCFIKRNRSTQTYYLFLSLTSSLGDDGKFLLAARKCRRPTCTDYIIS 157

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L +DDMS+GS+ Y+GKLRSNFLGTKF +YDGQPPHAGAK T+SRSTRL NLKQVSP++P 
Sbjct: 158 LDADDMSRGSNNYVGKLRSNFLGTKFTIYDGQPPHAGAKFTKSRSTRLVNLKQVSPKVPT 217

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           GNY VAHISYELNVLGSRGPRRM CVMDSIP+S+IE GGVAPTQTEF  +N + FP  PF
Sbjct: 218 GNYPVAHISYELNVLGSRGPRRMHCVMDSIPSSSIEPGGVAPTQTEFSLNNIEMFPLFPF 277

Query: 188 FRSKSNR-SEKFLSGPLAC-QKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQL 245
           FRSKSNR  E  LSGPL   +KDG LVL+NKAPRWHEQLQCWCLNFHGRVT+ASVKNFQL
Sbjct: 278 FRSKSNRVVENSLSGPLVGDKKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQL 337

Query: 246 VASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           VAS ENG AG EH+KIILQFGKVGKDLFTMD+RYPISAFQAFAICLSSFDTKIACE
Sbjct: 338 VASAENGTAGPEHDKIILQFGKVGKDLFTMDFRYPISAFQAFAICLSSFDTKIACE 393

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399101|gb|ADL36845.1| TLP domain class transcription factor [Malus x domestica]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/294 (80%), Positives = 261/294 (88%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + QPGPRD L+QCFIKRNRS QTY+L+L LT AL D+GKFLLAARK +R TCTDY+IS
Sbjct: 99  ISVKQPGPRDDLVQCFIKRNRSDQTYYLFLGLTPALIDEGKFLLAARKFKRPTCTDYVIS 158

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L++DDMSKGSS Y+GKLRSNFLGTKF ++DGQP H+GAK+ +SRSTRL NLKQVSPR+P 
Sbjct: 159 LYADDMSKGSSYYVGKLRSNFLGTKFTIFDGQPSHSGAKIAKSRSTRLVNLKQVSPRVPA 218

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           GNY VA I YELN+LGSRGPRRMQC MDSIP+S+IE GGVAPTQ EF  SNA+ FPS+ F
Sbjct: 219 GNYPVAQIQYELNMLGSRGPRRMQCTMDSIPSSSIEPGGVAPTQAEFSHSNAELFPSLSF 278

Query: 188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
            RSKSNR E FLSGPLA QKDG LVLRNK+PRWHEQLQCWCLNFHGRVTVASVKNFQLVA
Sbjct: 279 NRSKSNRMESFLSGPLARQKDGVLVLRNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 338

Query: 248 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           SPENGP G EHEKIILQFGKVGKD FTMDYRYPISAFQAF+ICLSSFDTKIACE
Sbjct: 339 SPENGPPGPEHEKIILQFGKVGKDQFTMDYRYPISAFQAFSICLSSFDTKIACE 392

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436797|ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/294 (79%), Positives = 260/294 (88%)

Query: 8   LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
           + + QPGPR  LLQC+IKRNRS QTYHLYL L  A  DDGKFLLAARKCRR TCTDYIIS
Sbjct: 112 ISLKQPGPRGSLLQCYIKRNRSNQTYHLYLGLNQASTDDGKFLLAARKCRRPTCTDYIIS 171

Query: 68  LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
           L++DD+SKGS+TY+GKLRSNFLGTKF VYD QPP+AGA++++SRSTR    +QVSPR+P 
Sbjct: 172 LNADDVSKGSTTYIGKLRSNFLGTKFTVYDAQPPNAGARISKSRSTRRLGSRQVSPRVPA 231

Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
           GNY VAHISYELNVLGSRGPRRMQCVMD+IPA+AIE GGVAPTQTEF+ SN DSFPS PF
Sbjct: 232 GNYPVAHISYELNVLGSRGPRRMQCVMDAIPANAIEPGGVAPTQTEFVLSNVDSFPSFPF 291

Query: 188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
           FRSKSNR+E   SGPL+  KD  LVL+NKAPRWHEQLQCWCLNF+GRVTVASVKNFQLVA
Sbjct: 292 FRSKSNRTESLHSGPLSGPKDEMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA 351

Query: 248 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           S ENG AG EHE +ILQFGKVGKD+FTMDY+YPISAFQAFAICLSSFDTKIACE
Sbjct: 352 SAENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2081101	380	TLP9 "AT3G06380" [Arabidopsis	0.936	0.742	0.646	5.3e-95
TAIR|locus:2180034	389	TLP11 "AT5G18680" [Arabidopsis	0.940	0.727	0.625	2.7e-91
TAIR|locus:2032950	445	TLP10 "AT1G25280" [Arabidopsis	0.627	0.424	0.532	1.9e-87
TAIR|locus:2025327	455	TLP1 "AT1G76900" [Arabidopsis	0.574	0.380	0.538	1.4e-86
TAIR|locus:2194686	429	TLP5 "AT1G43640" [Arabidopsis	0.780	0.547	0.547	8.2e-85
TAIR|locus:2009610	379	TLP7 "AT1G53320" [Arabidopsis	0.528	0.419	0.531	2.2e-80
TAIR|locus:2062121	394	TLP2 "AT2G18280" [Arabidopsis	0.943	0.720	0.555	6e-80
TAIR|locus:2036730	413	TLP6 "AT1G47270" [Arabidopsis	0.923	0.673	0.539	9e-77
MGI|MGI:2651573	505	Tub "tubby candidate gene" [Mu	0.289	0.172	0.542	1.8e-42
RGD|3918	505	Tub "tubby homolog (mouse)" [R	0.289	0.172	0.542	1.8e-42

TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)]

 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 194/300 (64%), Positives = 228/300 (76%)

Query:     8 LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
             + + Q GPRD L+QCFIKRNR+TQ+YHLYL LT +L D+GKFLLAA K +RATCTDYIIS
Sbjct:    93 ISLKQSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIIS 152

Query:    68 LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
             L SDD+SK S+ YLG++RSNFLGTKF V+DG    A AKM +SRS+   N  +VSPR+P 
Sbjct:   153 LRSDDISKRSNAYLGRMRSNFLGTKFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQ 208

Query:   128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
             G+Y +AHISYELNVLGSRGPRRM+C+MD+IP S +ES GV  + +   FS+  S    P 
Sbjct:   209 GSYPIAHISYELNVLGSRGPRRMRCIMDTIPMSIVESRGVVASTSISSFSSRSS----PV 264

Query:   188 FRSKSNRSEKFLSGPLACQKDG------ALVLRNKAPRWHEQLQCWCLNFHGRVTVASVK 241
             FRS    S+   S   +C   G       LVL NKAPRWHEQL+CWCLNFHGRVTVASVK
Sbjct:   265 FRS---HSKPLRSNSASCSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVK 321

Query:   242 NFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
             NFQLVA  +   AG   E+IILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct:   322 NFQLVAVSDC-EAGQTSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 380

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 189/302 (62%), Positives = 224/302 (74%)

Query:     8 LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
             + + QPGPRD L+QCFIKRNR TQ+YHLYL LTN+L DDGKFLLAA K +  TCTDYIIS
Sbjct:    99 ISLKQPGPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIIS 158

Query:    68 LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQ--PPHAGAKMTRSRSTRLANLKQVSPRI 125
             L SDDMS+ S  Y+GK+RSNFLGTKF V+DG   P    AK+ +SRS    N  +VS ++
Sbjct:   159 LRSDDMSRRSQAYVGKVRSNFLGTKFTVFDGNLLPSTGAAKLRKSRSY---NPAKVSAKV 215

Query:   126 PFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSI 185
             P G+Y VAHI+YELNVLGSRGPR+MQC+MD+IP S +E  GVA   +EF      S  ++
Sbjct:   216 PLGSYPVAHITYELNVLGSRGPRKMQCLMDTIPTSTMEPQGVASEPSEFPLLGTRS--TL 273

Query:   186 PFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQL 245
                +SK  RS    S  L   K+  LVL NK PRWHEQL+CWCLNFHGRVTVASVKNFQL
Sbjct:   274 SRSQSKPLRSS---SSHL---KETPLVLSNKTPRWHEQLRCWCLNFHGRVTVASVKNFQL 327

Query:   246 VASPENGPAGL------EHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIA 299
             VA+  +  +G       + E+IILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IA
Sbjct:   328 VAAGASCGSGTGMSPERQSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIA 387

Query:   300 CE 301
             CE
Sbjct:   388 CE 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
 Identities = 106/199 (53%), Positives = 146/199 (73%)

Query:    12 QPGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGKFLLAARKCRRATCTDYIISLHS 70
             QPGPRD ++QCFIKR++S  T+HL+L L+ AL  ++GKFLL+A++ RR T T+YIIS+ +
Sbjct:   122 QPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIISMDA 181

Query:    71 DDMSKGSSTYLGKLRSNFLGTKFIVYDGQPP---HAGAKMTRSRSTRLANLKQVSPRIPF 127
             D++S+ S++YLGKLRSNFLGTKF+VYD QPP    + A +T   S    + ++VSP++P 
Sbjct:   182 DNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSRFHSRRVSPKVPS 241

Query:   128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFL----FSNADSFP 183
             G+Y++A I+YELNVLG+RGPRRM C+M+SIP S++E GG  P Q E L    +S  DSF 
Sbjct:   242 GSYNIAQITYELNVLGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAPYSLDDSFR 301

Query:   184 S-IPFFRSK-SNRSEKFLS 200
             S I F +S   +RS  F S
Sbjct:   302 SNISFSKSSFDHRSLDFSS 320

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 1.4e-86, Sum P(3) = 1.4e-86
 Identities = 98/182 (53%), Positives = 133/182 (73%)

Query:    12 QPGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGKFLLAARKCRRATCTDYIISLHS 70
             QPGPRD  +QCFIKR++S  TYHLYL L+ AL  ++GKFLL+A++ RR T T+Y+IS+H+
Sbjct:   120 QPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHA 179

Query:    71 DDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPH----AGAKMTRSRSTRLANLKQVSPRIP 126
             D +S+ S+TY+GK+RSNFLGTKFI+YD QP +    A A      S R  + K+VSP++P
Sbjct:   180 DTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYNSNIARAVQPVGLSRRFYS-KRVSPKVP 238

Query:   127 FGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA---DSFP 183
              G+Y +A +SYELNVLG+RGPRRM C M+SIPAS++  GG  P Q + +   +   +SF 
Sbjct:   239 SGSYKIAQVSYELNVLGTRGPRRMHCAMNSIPASSLAEGGTVPGQPDIIVPRSILDESFR 298

Query:   184 SI 185
             SI
Sbjct:   299 SI 300

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
 Identities = 132/241 (54%), Positives = 178/241 (73%)

Query:    12 QPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHS 70
             QPGPRD ++QC+IKR++S  TYHLYLSL+ A L + GKFLL+A++ RRAT T+Y+IS+ +
Sbjct:   118 QPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDA 177

Query:    71 DDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAK-MTRSRSTRLANLKQVSPRIPFGN 129
             D++S+ SSTY+GKL+SNFLGTKFIVYD  P +  ++ ++    +R  N K+VSP++P G+
Sbjct:   178 DNISRSSSTYIGKLKSNFLGTKFIVYDTAPAYNSSQILSPPNRSRSFNSKKVSPKVPSGS 237

Query:   130 YSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNAD-SFPSIPFF 188
             Y++A ++YELN+LG+RGPRRM C+M SIP+ A+E GG  P+Q EFL  + D SF SI   
Sbjct:   238 YNIAQVTYELNLLGTRGPRRMNCIMHSIPSLALEPGGTVPSQPEFLQRSLDESFRSIG-- 295

Query:   189 RSKS-NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
              SK  N S  F        K   LVL+ K PRW + L+CWCLNF GRVTVASVKNFQL++
Sbjct:   296 SSKIVNHSGDFTRPKEEEGKVRPLVLKTKPPRWLQPLRCWCLNFKGRVTVASVKNFQLMS 355

Query:   248 S 248
             +
Sbjct:   356 A 356

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
 Identities = 85/160 (53%), Positives = 114/160 (71%)

Query:    13 PGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDD 72
             PGPRD+  QC IKRN+ T T++LYL+LT +  D GKFLLAAR+ R    T+YIISL +DD
Sbjct:   108 PGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADD 167

Query:    73 MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 132
              S+GS+ Y+GKLRS+FLGT F VYD QPPH GAK +  +++R    KQ+SP++P GN+ V
Sbjct:   168 FSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGAKPSNGKASRRFASKQISPQVPAGNFEV 227

Query:   133 AHISYELNVLGSRGPRRMQCVMDS-IPASAIESGGVAPTQ 171
              H+SY+ N+L SRGPRRM   +    P+ +  S G++  Q
Sbjct:   228 GHVSYKFNLLKSRGPRRMVSTLRCPSPSPSSSSAGLSSDQ 267

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 165/297 (55%), Positives = 214/297 (72%)

Query:     8 LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 67
             + + QPGPRD  +QCFIKRNR+T TY LY  L  +  ++ K LLAAR+ RRATCTD+IIS
Sbjct:   107 ISLKQPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATCTDFIIS 166

Query:    68 LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
             L + + S+ SSTY+GKLRS FLGTKF +YD Q   + A+   +R  RL + KQ +P++P 
Sbjct:   167 LSAKNFSRSSSTYVGKLRSGFLGTKFTIYDNQTASSTAQAQPNR--RL-HPKQAAPKLPT 223

Query:   128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
              + +V +I+YELNVL +RGPRRM C MDSIP S++ +    P+  + +     S PS P 
Sbjct:   224 NSSTVGNITYELNVLRTRGPRRMHCAMDSIPLSSVIA---EPSVVQGIEEEVSSSPS-P- 278

Query:   188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
              + ++  ++K +       +D  LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA
Sbjct:   279 -KGETITTDKEIPDNSPSLRDQPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVA 337

Query:   248 SPE---NGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
               +   + P   EHE++ILQFGK+GKD+FTMDYRYP+SAFQAFAIC+SSFDTK ACE
Sbjct:   338 EIDASLDAPPE-EHERVILQFGKIGKDIFTMDYRYPLSAFQAFAICISSFDTKPACE 393

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 163/302 (53%), Positives = 202/302 (66%)

Query:     8 LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADD-GKFLLAARKCRRATCTDYII 66
             + + QPGPRD  +QCFIKR R+T  Y LYL L+ AL+ D  K LL+A++ RRAT  ++++
Sbjct:   128 ISLRQPGPRDAPIQCFIKRERATGIYRLYLGLSPALSGDKSKLLLSAKRVRRATGAEFVV 187

Query:    67 SLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIP 126
             SL  +D S+ SS Y+GKLRSNFLGTKF VY+ QPP    K+  S         QVSP + 
Sbjct:   188 SLSGNDFSRSSSNYIGKLRSNFLGTKFTVYENQPPPFNRKLPPSM--------QVSPWVS 239

Query:   127 FGN--YSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPS 184
               +  Y++A I YELNVL +RGPRRMQC+M SIP SAI+ GG   + TEF          
Sbjct:   240 SSSSSYNIASILYELNVLRTRGPRRMQCIMHSIPISAIQEGGKIQSPTEFTNQGKKKKKP 299

Query:   185 IPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQ 244
             +  F S +   E  +  PL        +L+NK+PRWHEQLQCWCLNF GRVTVASVKNFQ
Sbjct:   300 LMDFCSGNLGGESVIKEPL--------ILKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQ 351

Query:   245 LVASPENGPAGL-----EHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIA 299
             LVA+       +     E +++ILQFGK+GKD+FTMDYRYPISAFQAFAICLSSFDTK  
Sbjct:   352 LVAAAAEAGKNMNIPEEEQDRVILQFGKIGKDIFTMDYRYPISAFQAFAICLSSFDTKPV 411

Query:   300 CE 301
             CE
Sbjct:   412 CE 413

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

MGI|MGI:2651573 Tub "tubby candidate gene" [Mus musculus (taxid:10090)]

 Score = 263 (97.6 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
 Identities = 51/94 (54%), Positives = 68/94 (72%)

Query:   208 DGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGK 267
             +  + L+NK P W++  Q + LNFHGRVT ASVKNFQ++    N P     + I++QFG+
Sbjct:   419 ESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHG--NDP-----DYIVMQFGR 471

Query:   268 VGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
             V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct:   472 VAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IMP

GO:0005886 "plasma membrane" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0007602 "phototransduction" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IMP

GO:0009584 "detection of visible light" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IMP

GO:0050766 "positive regulation of phagocytosis" evidence=ISO

GO:0050896 "response to stimulus" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

RGD|3918 Tub "tubby homolog (mouse)" [Rattus norvegicus (taxid:10116)]

 Score = 263 (97.6 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
 Identities = 51/94 (54%), Positives = 68/94 (72%)

Query:   208 DGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGK 267
             +  + L+NK P W++  Q + LNFHGRVT ASVKNFQ++    N P     + I++QFG+
Sbjct:   419 ESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHG--NDP-----DYIVMQFGR 471

Query:   268 VGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
             V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct:   472 VAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007602 "phototransduction" evidence=IEA;ISO

GO:0007605 "sensory perception of sound" evidence=IEA;ISO

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA;ISO

GO:0009584 "detection of visible light" evidence=ISO

GO:0009725 "response to hormone stimulus" evidence=IEP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IEA;ISO

GO:0050766 "positive regulation of phagocytosis" evidence=ISO;ISS

GO:0060041 "retina development in camera-type eye" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY21	TLP3_ARATH	No assigned EC number	0.7635	0.9767	0.7241	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
pfam01167	243	pfam01167, Tub, Tub family	1e-123

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score =  350 bits (901), Expect = e-123
 Identities = 127/286 (44%), Positives = 165/286 (57%), Gaps = 46/286 (16%)

Query: 13  PGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDG--KFLLAARKCRRATCTDYIISLH 69
           P PR   +QC I R++S   Y L+ +    L  ++G  KFLLAARK +R+  ++Y+ISL 
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 70  SDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGN 129
             D+S+    Y+GKLRSNFLGTKF V+D       A++             V+P++  G 
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARL-------------VTPKVASGR 107

Query: 130 YSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFR 189
             +A + YE NVLG RGPR+M  +M  IP+S        P Q                  
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIPSSHE----RVPIQPL---------------- 147

Query: 190 SKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP 249
              N  E  LS      K+  LVL NKAPRW++QLQ + LNFHGRVT ASVKNFQ+V + 
Sbjct: 148 ---NDQESLLSRWQNKNKESLLVLHNKAPRWNDQLQSYVLNFHGRVTQASVKNFQIVHAS 204

Query: 250 ENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 295
                  + + I+LQFG+V KD+FTMDYRYP+SAFQAFAICLSSFD
Sbjct: 205 -------DPDYIVLQFGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
KOG2502	355	consensus Tub family proteins [General function pr	100.0
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	100.0
KOG2503	565	consensus Tubby superfamily protein TULP4 [General	99.8
PF12043	346	DUF3527: Domain of unknown function (DUF3527); Int	98.53

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=100.00  E-value=1.9e-99  Score=715.97  Aligned_cols=252  Identities=59%  Similarity=0.931  Sum_probs=226.6

Q ss_pred             EeeeeeCCCCCCceEEEEEEEeccCCeEEEEeecccccC--CCCeEEEEEEeccCCCCceEEEEecCCCCCCCCCceeeE
Q 022202            6 VWLRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALA--DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGK   83 (301)
Q Consensus         6 ~~~~L~qP~P~~~~iqC~I~R~k~~~~Y~Lyl~~~~~~~--~~~kfLLaArKr~~~~tSnYiISld~~dlSr~s~~yvGK   83 (301)
                      .|++|+||||+|.++||+|+|||+|++|+||+.|++++.  |++||||||||+|++||+|||||+|++||||++++||||
T Consensus       102 ~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGk  181 (355)
T KOG2502|consen  102 FPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGK  181 (355)
T ss_pred             hhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeee
Confidence            499999999999999999999999999999999998764  779999999999999999999999999999999999999


Q ss_pred             eeecceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEEeccCCccccc
Q 022202           84 LRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIE  163 (301)
Q Consensus        84 LRSNflGTkF~iYD~g~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~Nvlg~rgPRkM~v~ip~Ip~~~i~  163 (301)
                      |||||+||||||||+|.+.          ++.++      ++|.+++|||+|+||+||||+||||||+|+||.||.++  
T Consensus       182 lRSN~lGTKFtVyD~g~~~----------~r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--  243 (355)
T KOG2502|consen  182 LRSNLLGTKFTVYDNGVNP----------SRRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--  243 (355)
T ss_pred             eecccccceEEEecCCCCc----------ccccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCC--
Confidence            9999999999999998321          12222      57889999999999999999999999999999999877  


Q ss_pred             CCCCCCcceeeeccCCCCCCCccccccCcccccccccCCcccCCCceEEeecCCCccccccccEEeecCCeeecccccee
Q 022202          164 SGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNF  243 (301)
Q Consensus       164 ~gg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~aSvKNF  243 (301)
                      ++|..|.|++..+.                   ..+..+++...+++++|+||.|+||+++||||||||||||+||||||
T Consensus       244 ~~~~v~~q~~~~~~-------------------~~l~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNF  304 (355)
T KOG2502|consen  244 PGGRVPVQPENDHP-------------------SLLFRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNF  304 (355)
T ss_pred             CCCccccccccccc-------------------chhhhccccCcccceEeecCCCccccccceEEEecCCeEEEeeecce
Confidence            78888876655331                   11223334446899999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHHHHHHcCccccccC
Q 022202          244 QLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  301 (301)
Q Consensus       244 qLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFaiaLssfd~KlaCe  301 (301)
                      |||+..       ++++|||||||||+|.|||||+||||+||||||||||||+|||||
T Consensus       305 QLv~~~-------~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  305 QLVHAL-------DPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE  355 (355)
T ss_pred             EEeccC-------CCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhccccccCC
Confidence            999984       679999999999999999999999999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=100.00  E-value=1.6e-85  Score=606.18  Aligned_cols=245  Identities=56%  Similarity=0.920  Sum_probs=184.3

Q ss_pred             CCCCCceEEEEEEEeccCCeEEEEeecccccC-CCCeEEEEEEeccCCCCceEEEEecCCCCCCCCCceeeEeeecceec
Q 022202           13 PGPRDYLLQCFIKRNRSTQTYHLYLSLTNALA-DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGT   91 (301)
Q Consensus        13 P~P~~~~iqC~I~R~k~~~~Y~Lyl~~~~~~~-~~~kfLLaArKr~~~~tSnYiISld~~dlSr~s~~yvGKLRSNflGT   91 (301)
                      |||++++|||+|+|||+|.++.||+.|+.++. ++++|||||||+++++||||+||++++|+||++++|||||||||+||
T Consensus         1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT   80 (246)
T PF01167_consen    1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT   80 (246)
T ss_dssp             B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred             CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence            89999999999999999987767776666544 89999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEEeccCCcccccCCCCCCcc
Q 022202           92 KFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQ  171 (301)
Q Consensus        92 kF~iYD~g~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~Nvlg~rgPRkM~v~ip~Ip~~~i~~gg~~p~~  171 (301)
                      +|+|||+|.+++.+.             ..+|+.+..|+|||+|.||+||||++|||||+|+||.|+.+..++++..|.+
T Consensus        81 ~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~  147 (246)
T PF01167_consen   81 EFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ  147 (246)
T ss_dssp             EEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred             EEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence            999999996554332             1245667789999999999999999999999999999987766555544322


Q ss_pred             eeeeccCCCCCCCccccccCcccccccccCCcccCCCceEEeecCCCccccccccEEeecCCeeeccccceeEEEeCCCC
Q 022202          172 TEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEN  251 (301)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~aSvKNFqLv~~~~~  251 (301)
                                    |.    ....+...........+++++|+||+|+||+++++|+|||+|||++|||||||||++.  
T Consensus       148 --------------p~----~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~--  207 (246)
T PF01167_consen  148 --------------PL----NQEKDSLLSRFQNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHPS--  207 (246)
T ss_dssp             ---------------S----S-CCCSHHHHHHCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBTT--
T ss_pred             --------------cc----ccccccccccccccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEccC--
Confidence                          00    0001111122223456799999999999999999999999999999999999999973  


Q ss_pred             CCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHHHHHHcCc
Q 022202          252 GPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD  295 (301)
Q Consensus       252 ~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFaiaLssfd  295 (301)
                           +.+++||||||+++|.|+|||+|||||+|||||||||||
T Consensus       208 -----~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd  246 (246)
T PF01167_consen  208 -----DPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD  246 (246)
T ss_dssp             -----BTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred             -----CCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence                 688999999999999999999999999999999999997

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]

Probab=99.80  E-value=1.5e-20  Score=184.80  Aligned_cols=78  Identities=42%  Similarity=0.731  Sum_probs=72.8

Q ss_pred             ceEEeecCCCccccccccEEeecCCeeeccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHH
Q 022202          209 GALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFA  288 (301)
Q Consensus       209 ~~~~l~~k~P~w~~~~~~y~LnF~gRv~~aSvKNFqLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFa  288 (301)
                      .+.++.||+|.|||..|-|+|||.||||+.|.||||+-..          .+.|||||+++.+.|++||+||||+.||||
T Consensus       485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaFa  554 (565)
T KOG2503|consen  485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAFA  554 (565)
T ss_pred             eEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHHH
Confidence            4569999999999999999999999999999999999764          588999999999999999999999999999


Q ss_pred             HHHHcCcc
Q 022202          289 ICLSSFDT  296 (301)
Q Consensus       289 iaLssfd~  296 (301)
                      +||++.--
T Consensus       555 valanvtq  562 (565)
T KOG2503|consen  555 VALANVTQ  562 (565)
T ss_pred             HHHhhhhh
Confidence            99998643

>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised

Probab=98.53  E-value=2e-05  Score=76.51  Aligned_cols=58  Identities=21%  Similarity=0.452  Sum_probs=47.1

Q ss_pred             CeeeccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHHHHHHcCcc
Q 022202          233 GRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDT  296 (301)
Q Consensus       233 gRv~~aSvKNFqLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFaiaLssfd~  296 (301)
                      .+...+.-+=|.|....      ..++..+|-+--+.++.|.+||+..||+||||+||++-.+.
T Consensus       287 ~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~  344 (346)
T PF12043_consen  287 SSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS  344 (346)
T ss_pred             cccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence            44555567778888753      23444899999999999999999999999999999987764

This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
1s31_A	273	Crystal Structure Analysis Of The Human Tub Protein		4e-46
1c8z_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Leng		1e-45
1i7e_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Boun		3e-45
2fim_A	276	Structure Of The C-Terminal Domain Of Human Tubby-L		2e-44
3c5n_A	246	Structure Of Human Tulp1 In Complex With Ip3 Length		1e-41

>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273

Iteration: 1
 Score =  181 bits (459), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 161/302 (53%), Gaps = 62/302 (20%)
Query: 11  LQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGK--FLLAARKCRRATCT 62
           L+P P+   ++C I R++         TY L+L       +DGK  FLLA RK +++  +
Sbjct: 23  LRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTS 77
Query: 63  DYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQV 121
           +Y+IS+   D+S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q 
Sbjct: 78  NYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ- 132
Query: 122 SPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNA 179
                     +A + YE NVLG +GPR+M  +   +P   +  E   + P          
Sbjct: 133 ---------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP---------- 170
Query: 180 DSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVAS 239
                        N  E  L+       +  + L+NK P W++  Q + LNFHGRVT AS
Sbjct: 171 ------------RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQAS 218
Query: 240 VKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIA 299
           VKNFQ++        G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+A
Sbjct: 219 VKNFQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLA 271
Query: 300 CE 301
           CE
Sbjct: 272 CE 273

>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265

Iteration: 1
 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 161/302 (53%), Gaps = 62/302 (20%)
Query: 11  LQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGK--FLLAARKCRRATCT 62
           L+P P+   ++C I R++         TY L+L       +DGK  FLLA RK +++  +
Sbjct: 15  LRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTS 69
Query: 63  DYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQV 121
           +Y+IS+   D+S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q 
Sbjct: 70  NYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ- 124
Query: 122 SPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNA 179
                     +A + YE NVLG +GPR+M  +   +P   +  E   + P          
Sbjct: 125 ---------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP---------- 162
Query: 180 DSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVAS 239
                        N  E  L+       +  + L+NK P W++  Q + LNFHGRVT AS
Sbjct: 163 ------------RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQAS 210
Query: 240 VKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIA 299
           VKNFQ++        G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+A
Sbjct: 211 VKNFQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLA 263
Query: 300 CE 301
           CE
Sbjct: 264 CE 265

>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265

Iteration: 1
 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 161/302 (53%), Gaps = 62/302 (20%)
Query: 11  LQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGK--FLLAARKCRRATCT 62
           L+P P+   ++C I R++         TY L+L       +DGK  FLLA RK +++  +
Sbjct: 15  LRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTS 69
Query: 63  DYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQV 121
           +Y+IS+   D+S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q 
Sbjct: 70  NYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ- 124
Query: 122 SPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNA 179
                     +A + YE NVLG +GPR+M  +   +P   +  E   + P          
Sbjct: 125 ---------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP---------- 162
Query: 180 DSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVAS 239
                        N  E  L+       +  + L+NK P W++  + + LNFHGRVT AS
Sbjct: 163 ------------RNEHETLLARWQNKNTESIIELQNKTPVWNDDTESYVLNFHGRVTQAS 210
Query: 240 VKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIA 299
           VKNFQ++        G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+A
Sbjct: 211 VKNFQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLA 263
Query: 300 CE 301
           CE
Sbjct: 264 CE 265

>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276

Iteration: 1
 Score =  176 bits (446), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/294 (37%), Positives = 158/294 (53%), Gaps = 48/294 (16%)
Query: 10  ILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGK-FLLAARKCRRATCTDYIISL 68
           +L+P P+   ++C + R++      +Y S    L  + K FLLA RK +R+   +Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88
Query: 69  HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
              ++S+G   ++GKLRSN LG +F V+D GQ P  G       ST +A+L+Q       
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ------- 135
Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
               +A + YE NVLG RGPRRM  +   IP  + E+               +  P  P 
Sbjct: 136 ---ELAAVIYETNVLGFRGPRRMTVI---IPGMSAEN---------------ERVPIRP- 173
Query: 188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
                N S+  L        +  + L NK P W++    + LNF GRVT ASVKNFQ+V 
Sbjct: 174 ----RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVH 229
Query: 248 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
           + +        + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD K+ACE
Sbjct: 230 ADD-------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276

>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246

Iteration: 1
 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/288 (37%), Positives = 153/288 (53%), Gaps = 48/288 (16%)
Query: 10  ILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGK-FLLAARKCRRATCTDYIISL 68
           +L+P P+   ++C + R++      +Y S    L  + K FLLA RK +R+   +Y+IS+
Sbjct: 5   VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 64
Query: 69  HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 127
              ++S+G   ++GKLRSN LG +F V+D GQ P  G       ST +A+L+Q       
Sbjct: 65  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ------- 111
Query: 128 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 187
               +A + YE NVLG RGPRRM  +   IP  + E+               +  P  P 
Sbjct: 112 ---ELAAVIYETNVLGFRGPRRMTVI---IPGMSAEN---------------ERVPIRP- 149
Query: 188 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 247
                N S+  L        +  + L NK P W++    + LNF GRVT ASVKNFQ+V 
Sbjct: 150 ----RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVH 205
Query: 248 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 295
           + +        + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD
Sbjct: 206 ADD-------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	5e-95
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	3e-92
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score =  281 bits (719), Expect = 5e-95
 Identities = 101/293 (34%), Positives = 147/293 (50%), Gaps = 46/293 (15%)

Query: 10  ILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGK-FLLAARKCRRATCTDYIISL 68
           +L+P P+   ++C + R++      +Y S    L  + K FLLA RK +R+   +Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 69  HSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFG 128
              ++S+G   ++GKLRSN LG +F V+D                     +  S  +   
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASL 133

Query: 129 NYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFF 188
              +A + YE NVLG RGPRRM  ++  + A                    +  P  P  
Sbjct: 134 RQELAAVIYETNVLGFRGPRRMTVIIPGMSA------------------ENERVPIRP-- 173

Query: 189 RSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS 248
               N S+  L        +  + L NK P W++    + LNF GRVT ASVKNFQ+V +
Sbjct: 174 ---RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA 230

Query: 249 PENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
            +        + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD K+ACE
Sbjct: 231 DD-------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score =  272 bits (697), Expect = 3e-92
 Identities = 94/287 (32%), Positives = 144/287 (50%), Gaps = 46/287 (16%)

Query: 10  ILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGK-FLLAARKCRRATCTDYIISL 68
           +L+P P+   ++C + R++      +Y S    L  + K FLLA RK +R+   +Y+IS+
Sbjct: 5   VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 64

Query: 69  HSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFG 128
              ++S+G   ++GKLRSN LG +F V+D                     +  S  +   
Sbjct: 65  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASL 109

Query: 129 NYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFF 188
              +A + YE NVLG RGPRRM  ++  + A           +   +     S   +  +
Sbjct: 110 RQELAAVIYETNVLGFRGPRRMTVIIPGMSA---------ENERVPIRPRNASDGLLVRW 160

Query: 189 RSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS 248
           ++K+               +  + L NK P W++    + LNF GRVT ASVKNFQ+V +
Sbjct: 161 QNKT--------------LESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA 206

Query: 249 PENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 295
            +        + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD
Sbjct: 207 DD-------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 36/150 (24%)

Query: 4   EIVWLRILQPGPRDYLLQCF----IKRNRSTQTY---HLYLSLTNALADDG---KFLLAA 53
            ++W  +++      + +      +++     T     +YL L   L ++    + ++  
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 54  RKCRRATCTD---------YI---ISLH------SDDMSKGSSTYLGKLRSNFLGTKFIV 95
               +   +D         Y    I  H       + M+     +L   R  FL  K I 
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFR--FLEQK-IR 508

Query: 96  YDGQPPHAGAKMTRSRSTRLANLKQVSPRI 125
           +D    +A   +  +    L  LK   P I
Sbjct: 509 HDSTAWNASGSILNT----LQQLKFYKPYI 534

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 47/345 (13%), Positives = 80/345 (23%), Gaps = 135/345 (39%)

Query: 16  RDYLL---QCFIKRNRSTQTYHLYLSLTNALADD--------------GKFLLAARKCR- 57
           RD L    Q F K N S      YL L  AL +               GK  +A   C  
Sbjct: 116 RDRLYNDNQVFAKYNVSRL--QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 58  -----------------RATCTDYIIS--------LHSDDMSKGSSTYLGKLRSNFLGTK 92
                                 + ++         +  +  S+   +   KLR + +  +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 93  FIVYDGQPPHAGAKMTRSRSTRLANLKQV-SPRI--PFG----------NYSVAHISYEL 139
                   P+            L  L  V + +    F              V       
Sbjct: 234 LRRLLKSKPYENC---------LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT------ 278

Query: 140 NVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA--DSFPSIPFFRSKSNRSEK 197
           + L           +D        S  + P + + L           +P         E 
Sbjct: 279 DFLS--AATTTHISLDH------HSMTLTPDEVKSLLLKYLDCRPQDLP--------REV 322

Query: 198 FLSGPLACQKDGALVLRNKAPRWH--EQLQCWCLNFHGRVTVASVKNFQLVASPENGPAG 255
             + P          +R+    W   + + C  L     +  +S+   +        PA 
Sbjct: 323 LTTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLT---TIIESSLNVLE--------PA- 369

Query: 256 LEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSF--DTKI 298
                               +YR     F   ++    F     I
Sbjct: 370 --------------------EYR---KMFDRLSV----FPPSAHI 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	100.0
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	100.0

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=100.00  E-value=1.1e-89  Score=641.25  Aligned_cols=245  Identities=40%  Similarity=0.701  Sum_probs=186.9

Q ss_pred             eeeeeCCCCCCceEEEEEEEeccC------CeEEEEeecccccCCCCeEEEEEEeccCCCCceEEEEecCCCCCCCCCce
Q 022202            7 WLRILQPGPRDYLLQCFIKRNRST------QTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTY   80 (301)
Q Consensus         7 ~~~L~qP~P~~~~iqC~I~R~k~~------~~Y~Lyl~~~~~~~~~~kfLLaArKr~~~~tSnYiISld~~dlSr~s~~y   80 (301)
                      .-+|+||+|+++++||+|+|+|+|      ++|+||++     .++++|||||||+++++|+||+||+|++||||++++|
T Consensus        26 ~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~y  100 (276)
T 2fim_A           26 REFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENF  100 (276)
T ss_dssp             TTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------CE
T ss_pred             HHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceE
Confidence            458999999999999999999998      59999995     4678999999999999999999999999999999999


Q ss_pred             eeEeeecceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEEeccCCcc
Q 022202           81 LGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPAS  160 (301)
Q Consensus        81 vGKLRSNflGTkF~iYD~g~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~Nvlg~rgPRkM~v~ip~Ip~~  160 (301)
                      ||||||||+||+|+|||+|.+++.               ..+|+++.+|+|||+|.||+|+||++|||+|+|+||.+.  
T Consensus       101 vGKLrSNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~--  163 (276)
T 2fim_A          101 IGKLRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS--  163 (276)
T ss_dssp             EEEEEECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECBC--
T ss_pred             EEEEEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc--
Confidence            999999999999999999954321               124556678899999999999999999999999998542  


Q ss_pred             cccCCCCCCcceeeeccCCCCCCCccccccCcccccccccCCcccCCCceEEeecCCCccccccccEEeecCCeeecccc
Q 022202          161 AIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASV  240 (301)
Q Consensus       161 ~i~~gg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~aSv  240 (301)
                        ++++..|.+    +.               ...|..+.++++...+++++|+||+|+|||++|||||||+||||+|||
T Consensus       164 --~~~~~~~~~----p~---------------~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSv  222 (276)
T 2fim_A          164 --AENERVPIR----PR---------------NASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASV  222 (276)
T ss_dssp             --TTSCBCCCC----CS---------------STTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCT
T ss_pred             --cCCCEeccc----CC---------------CcccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeecccc
Confidence              222222210    00               011112222334456789999999999999999999999999999999


Q ss_pred             ceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHHHHHHcCccccccC
Q 022202          241 KNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  301 (301)
Q Consensus       241 KNFqLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFaiaLssfd~KlaCe  301 (301)
                      ||||||+++       ++++||||||||++|+|+|||+|||||||||||||||||+|||||
T Consensus       223 KNFQLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          223 KNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             TCEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             ceEEEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            999999974       678999999999999999999999999999999999999999998

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=100.00  E-value=4.5e-87  Score=614.99  Aligned_cols=238  Identities=39%  Similarity=0.693  Sum_probs=191.4

Q ss_pred             eeeeCCCCCCceEEEEEEEeccC------CeEEEEeecccccCCCCeEEEEEEeccCCCCceEEEEecCCCCCCCCCcee
Q 022202            8 LRILQPGPRDYLLQCFIKRNRST------QTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYL   81 (301)
Q Consensus         8 ~~L~qP~P~~~~iqC~I~R~k~~------~~Y~Lyl~~~~~~~~~~kfLLaArKr~~~~tSnYiISld~~dlSr~s~~yv   81 (301)
                      -+|+||+|+|++|||+|+|||+|      ++|+||++     .++++|||||||+++++||||+||+|++|+||++++||
T Consensus         3 ~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yv   77 (246)
T 3c5n_A            3 EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFI   77 (246)
T ss_dssp             TGGGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEE
T ss_pred             hHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEE
Confidence            37999999999999999999998      58999985     45678999999999999999999999999999999999


Q ss_pred             eEeeecceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEEeccCCccc
Q 022202           82 GKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASA  161 (301)
Q Consensus        82 GKLRSNflGTkF~iYD~g~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~Nvlg~rgPRkM~v~ip~Ip~~~  161 (301)
                      |||||||+||+|+|||+|.+++.               ..+|.++.+|+|||+|.||+|+||++|||+|+|+||.+.   
T Consensus        78 GKLrsNf~Gt~F~iyD~g~~p~~---------------~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~---  139 (246)
T 3c5n_A           78 GKLRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS---  139 (246)
T ss_dssp             EEEEECSSSSEEEEECSCBCGGG---------------CTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBC---
T ss_pred             EEEEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc---
Confidence            99999999999999999954321               124556678899999999999999999999999998542   


Q ss_pred             ccCCCCCCcceeeeccCCCCCCCccccccCcccccccccCCcccCCCceEEeecCCCccccccccEEeecCCeeeccccc
Q 022202          162 IESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVK  241 (301)
Q Consensus       162 i~~gg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~aSvK  241 (301)
                       ++++..|.+    +.               ...|..+.++++...+++++|+||+|+|||++|||||||+||||+||||
T Consensus       140 -~~~~~~~~~----p~---------------~~~~~~~~~~~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvK  199 (246)
T 3c5n_A          140 -AENERVPIR----PR---------------NASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVK  199 (246)
T ss_dssp             -TTSCBCCCC----CS---------------STTSSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCCTT
T ss_pred             -cCCCEeecc----CC---------------CccccchhhhhccCCcceEEEeccCCcccccCCEEEEecCCeeeccccc
Confidence             223222210    00               0111122223344567899999999999999999999999999999999


Q ss_pred             eeEEEeCCCCCCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHHHHHHcCc
Q 022202          242 NFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD  295 (301)
Q Consensus       242 NFqLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFaiaLssfd  295 (301)
                      |||||+++       ++++||||||||++|.|+|||+|||||||||||||||||
T Consensus       200 NFqLv~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD  246 (246)
T 3c5n_A          200 NFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD  246 (246)
T ss_dssp             CEEEEBTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred             eEEEEecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence            99999974       678999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	1e-105

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  305 bits (782), Expect = e-105
 Identities = 97/295 (32%), Positives = 148/295 (50%), Gaps = 46/295 (15%)

Query: 10  ILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALA---DDGKFLLAARKCRRATCTDYII 66
            L+P P+   ++C I R++      ++ +    L        FLLA RK +++  ++Y+I
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLI 73

Query: 67  SLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIP 126
           S+   D+S+G  +Y+GKLRSN +GTKF VYD       A                +    
Sbjct: 74  SVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKA-------------SSSTLESG 120

Query: 127 FGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIP 186
                +A + YE NVLG +GPR+M  ++  +             + E L +         
Sbjct: 121 TLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLLA--------- 171

Query: 187 FFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLV 246
             R ++               +  + L+NK P W++  Q + LNFHGRVT ASVKNFQ++
Sbjct: 172 --RWQNK------------NTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQII 217

Query: 247 ASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301
                     + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 218 HGN-------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	100.0

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-85  Score=605.22  Aligned_cols=249  Identities=41%  Similarity=0.692  Sum_probs=207.2

Q ss_pred             eeeeeCCCCCCceEEEEEEEeccCC------eEEEEeecccccCCCCeEEEEEEeccCCCCceEEEEecCCCCCCCCCce
Q 022202            7 WLRILQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTY   80 (301)
Q Consensus         7 ~~~L~qP~P~~~~iqC~I~R~k~~~------~Y~Lyl~~~~~~~~~~kfLLaArKr~~~~tSnYiISld~~dlSr~s~~y   80 (301)
                      .-+|+||+|+|++|||+|+|||+|.      +|+|||+..   .+.++|||||||+++++++|||||+|++|+||+|++|
T Consensus        11 ~~Fl~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~---~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~y   87 (265)
T d1c8za_          11 EEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRE---DGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSY   87 (265)
T ss_dssp             HHHHHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECT---TSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCCC
T ss_pred             HHHhcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccC---CCceeEEEEEeeecCCCcceEEEEccHHHhcccccce
Confidence            5689999999999999999999874      678887532   3445699999999999999999999999999999999


Q ss_pred             eeEeeecceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEEeccCCcc
Q 022202           81 LGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPAS  160 (301)
Q Consensus        81 vGKLRSNflGTkF~iYD~g~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~Nvlg~rgPRkM~v~ip~Ip~~  160 (301)
                      ||||||||+||+|+|||+|.+++.++..             +.+..+.|+|||+|+||+|+||++|||+|+|+||.++..
T Consensus        88 vGKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~~  154 (265)
T d1c8za_          88 IGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMV  154 (265)
T ss_dssp             SEEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCTT
T ss_pred             eEEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEEecCCCcc
Confidence            9999999999999999999655433211             112234578999999999999999999999999977532


Q ss_pred             cccCCCCCCcceeeeccCCCCCCCccccccCcccccccccCCcccCCCceEEeecCCCccccccccEEeecCCeeecccc
Q 022202          161 AIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASV  240 (301)
Q Consensus       161 ~i~~gg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~aSv  240 (301)
                      ....        .+.          |     ....+..+.++.+...+++++|+||+|+||+++++|+|||+|||++|||
T Consensus       155 ~~~~--------~~~----------p-----~~~~~~~~~~~~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~~Sv  211 (265)
T d1c8za_         155 HERV--------CIR----------P-----RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASV  211 (265)
T ss_dssp             SCBC--------CCC----------C-----SSTTSSHHHHHHTTCCSSEEEEEECCCEEETTTTEEEEEETTEEEECBT
T ss_pred             cccc--------ccC----------C-----CCcchhhhHHhhccCcccceEEecCCCeeeccCCEEEeccCCEEecccc
Confidence            1110        010          0     0111222233344566899999999999999999999999999999999


Q ss_pred             ceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHHHHHHcCccccccC
Q 022202          241 KNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  301 (301)
Q Consensus       241 KNFqLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFaiaLssfd~KlaCe  301 (301)
                      ||||||+++       +++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       212 KNFql~~~~-------~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         212 KNFQIIHGN-------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             TEEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             ceEEEEeCC-------CCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            999999863       678999999999999999999999999999999999999999998